Citrus Sinensis ID: 048654
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 723 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M1H3 | 723 | ABC transporter F family | yes | no | 0.988 | 0.988 | 0.823 | 0.0 | |
| Q8NE71 | 845 | ATP-binding cassette sub- | yes | no | 0.764 | 0.654 | 0.491 | 1e-138 | |
| Q7YR37 | 807 | ATP-binding cassette sub- | yes | no | 0.764 | 0.685 | 0.489 | 1e-137 | |
| Q6MG08 | 839 | ATP-binding cassette sub- | yes | no | 0.764 | 0.659 | 0.489 | 1e-137 | |
| Q767L0 | 807 | ATP-binding cassette sub- | yes | no | 0.764 | 0.685 | 0.487 | 1e-137 | |
| Q6P542 | 837 | ATP-binding cassette sub- | yes | no | 0.764 | 0.660 | 0.486 | 1e-134 | |
| Q8H0V6 | 715 | ABC transporter F family | no | no | 0.733 | 0.741 | 0.451 | 1e-130 | |
| Q9FJH6 | 595 | ABC transporter F family | no | no | 0.719 | 0.873 | 0.435 | 1e-128 | |
| Q8K268 | 709 | ATP-binding cassette sub- | no | no | 0.800 | 0.816 | 0.435 | 1e-128 | |
| Q9NUQ8 | 709 | ATP-binding cassette sub- | no | no | 0.726 | 0.740 | 0.443 | 1e-126 |
| >sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/731 (82%), Positives = 656/731 (89%), Gaps = 16/731 (2%)
Query: 1 MGKKKSEEAGVAAK----SKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKS 56
MGKKKS+E+ K K+ SKD KKEKLSVSAMLA MD K DKPKKGS+S
Sbjct: 1 MGKKKSDESAATTKVKPSGKDASKDSKKEKLSVSAMLAGMDQKDDKPKKGSSS------- 53
Query: 57 KSKAVAKP-SYTDGIDLPPSDDEDDYALDEEIDAKKQLHRQQKDESKQLEISVTDKELKK 115
++KA K SYTDGIDLPPSD+EDD +E + +K+ R+ K E + LEISVTDKE KK
Sbjct: 54 RTKAAPKSTSYTDGIDLPPSDEEDDGE-SDEEERQKEARRKLKSEQRHLEISVTDKEQKK 112
Query: 116 REKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAA 175
RE K+ LA AE AK+EA++DDHDAFTVVIGS+TSVLEG D ADANVKDITI++FSV+A
Sbjct: 113 REAKERLALQAAESAKREAMKDDHDAFTVVIGSKTSVLEGDDMADANVKDITIESFSVSA 172
Query: 176 RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD 235
RGKELLK+ SVRISHGKRYGL+GPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD+
Sbjct: 173 RGKELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDE 232
Query: 236 RSAIQAVVSAHEELVKLREEVASLQNSTS-VDGEE-DGDDANDAGEKLAELYEKLQILGS 293
+SA+ AVVSA+EELVKLREE +LQ S+S DGE DG+D +D GEKLAELY++LQILGS
Sbjct: 233 KSALNAVVSANEELVKLREEAEALQKSSSGADGENVDGEDDDDTGEKLAELYDRLQILGS 292
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
DAAEAQASKILAGLGFTK+MQ R T+SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL
Sbjct: 293 DAAEAQASKILAGLGFTKDMQVRATQSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 352
Query: 354 RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRR 413
RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQ LHFYRGNFD FESGYEQRR
Sbjct: 353 RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQNLHFYRGNFDGFESGYEQRR 412
Query: 414 KEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGK-VDEDEPLPEA 472
KEMNKKF++Y+KQ+KAAKR+GNR QQEKVKDRAK AAKEASK+K+KGK VDE+ P PEA
Sbjct: 413 KEMNKKFDVYDKQMKAAKRTGNRGQQEKVKDRAKFTAAKEASKSKSKGKTVDEEGPAPEA 472
Query: 473 PKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPN 532
P+KWRDYSV FHFPEPTELTPPLLQLIEVSFSYPNR DF+LS+VDVGIDMGTRVAIVGPN
Sbjct: 473 PRKWRDYSVVFHFPEPTELTPPLLQLIEVSFSYPNRPDFRLSNVDVGIDMGTRVAIVGPN 532
Query: 533 GAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592
GAGKSTLLNLLAGDL PTEGE+RRSQKLRIGRYSQHFVDLLTM ETPV YLLRLHPDQEG
Sbjct: 533 GAGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRYSQHFVDLLTMGETPVQYLLRLHPDQEG 592
Query: 593 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652
SKQEAVRAKLGKFGLPSHNHL+PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM
Sbjct: 593 FSKQEAVRAKLGKFGLPSHNHLSPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652
Query: 653 QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712
QSIDALADALDEFTGGVVLVSHDSRLISRVC +EE+S+IWVVE+GTV+ FPGTFEEYKED
Sbjct: 653 QSIDALADALDEFTGGVVLVSHDSRLISRVCAEEEKSQIWVVEDGTVNFFPGTFEEYKED 712
Query: 713 LQREIKAEVDD 723
LQREIKAEVD+
Sbjct: 713 LQREIKAEVDE 723
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/580 (49%), Positives = 395/580 (68%), Gaps = 27/580 (4%)
Query: 134 ALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKR 193
A +D + SR ++LE N DI ++ FS++A GKEL + + I G+R
Sbjct: 279 AAENDFSVSQAEMSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVAGRR 331
Query: 194 YGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR 253
YGLVGPNG GK+TLLK +A R + +P NIDVLL EQEVV D+ A+QAV+ A + +KL
Sbjct: 332 YGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLL 391
Query: 254 EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM 313
EE LQ E GDD A E+L ++YE+L+ G+ AAEA+A +ILAGLGF EM
Sbjct: 392 EEERRLQGQL-----EQGDDT--AAERLEKVYEELRATGAAAAEAKARRILAGLGFDPEM 444
Query: 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVV 373
Q RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL++V
Sbjct: 445 QNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIV 504
Query: 374 SHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRS 433
SHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K K
Sbjct: 505 SHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAG 564
Query: 434 GNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTP 493
G +Q + + K A ++ K + K + +E + PE K+ ++Y+V F FP+P L+P
Sbjct: 565 GKSTKQ--AEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSP 622
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
P+L L V+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+PT GE
Sbjct: 623 PVLGLHGVTFGYQGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGE 681
Query: 554 VRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH 613
+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL SH H
Sbjct: 682 MRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLESHAH 736
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVS 673
I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++E+ G V++VS
Sbjct: 737 TIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVS 796
Query: 674 HDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
HD+RLI+ E ++WVVE +VS+ G FE+YK ++
Sbjct: 797 HDARLIT-----ETNCQLWVVEEQSVSQIDGDFEDYKREV 831
|
Isoform 2 is required for efficient Cap- and IRES-mediated mRNA translation initiation. Isoform 2 is not involved in the ribosome biogenesis. Homo sapiens (taxid: 9606) |
| >sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 284/580 (48%), Positives = 394/580 (67%), Gaps = 27/580 (4%)
Query: 134 ALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKR 193
A +D + SR ++LE N DI ++ FS++A GKEL + + I +R
Sbjct: 241 AAENDFSVSQAEMSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVASRR 293
Query: 194 YGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR 253
YGLVGPNG GK+TLLK +A R + +P NIDVLL EQEVV D+ A+QAV+ A + +KL
Sbjct: 294 YGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLL 353
Query: 254 EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM 313
EE LQ E GDD A E+L ++YE+L+ G+ AAEA+A +ILAGLGF EM
Sbjct: 354 EEERRLQGQL-----EQGDDT--AAERLEKVYEELRATGAAAAEAKARRILAGLGFDPEM 406
Query: 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVV 373
Q RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL++V
Sbjct: 407 QNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIV 466
Query: 374 SHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRS 433
SHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K K
Sbjct: 467 SHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAG 526
Query: 434 GNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTP 493
G +Q + + K A ++ K + K + +E + PE K+ ++Y+V F FP+P L+P
Sbjct: 527 GKSTKQ--AEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSP 584
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
P+L L V+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+PT GE
Sbjct: 585 PVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGE 643
Query: 554 VRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH 613
+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL SH H
Sbjct: 644 MRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLESHAH 698
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVS 673
I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++E+ G V++VS
Sbjct: 699 TIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVS 758
Query: 674 HDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
HD+RLI+ E ++WVVE +VS+ G FE+YK ++
Sbjct: 759 HDARLIT-----ETNCQLWVVEEQSVSQIDGDFEDYKREV 793
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Pan troglodytes (taxid: 9598) |
| >sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust.
Identities = 284/580 (48%), Positives = 394/580 (67%), Gaps = 27/580 (4%)
Query: 134 ALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKR 193
A +D + SR ++LE N DI ++ FS++A GKEL + + I G+R
Sbjct: 273 AAENDFSVSQAEVSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVAGRR 325
Query: 194 YGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR 253
YGLVGPNG GK+TLLK +A R + +P NIDVLL EQEVV D+ A+QAV+ A + ++L
Sbjct: 326 YGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLRLL 385
Query: 254 EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM 313
EE LQ E GDD A EKL ++YE+L+ G+ AAEA+A +ILAGLGF EM
Sbjct: 386 EEEKRLQGQL-----EQGDDT--AAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEM 438
Query: 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVV 373
Q RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL++V
Sbjct: 439 QNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIV 498
Query: 374 SHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRS 433
SHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K K
Sbjct: 499 SHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAG 558
Query: 434 GNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTP 493
G +Q + + K ++ K + K + +E + PE K+ R+Y+V F FP+P L+P
Sbjct: 559 GKSTKQ--AEKQTKEVLTRKQQKCRRKNQDEESQDPPELLKRPREYTVRFTFPDPPPLSP 616
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
P+L L V+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+PT GE
Sbjct: 617 PVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGE 675
Query: 554 VRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH 613
+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL SH H
Sbjct: 676 MRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLESHAH 730
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVS 673
I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++E+ G V++VS
Sbjct: 731 TIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVS 790
Query: 674 HDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
HD+RLI+ E ++WVVE +VS+ G F++YK ++
Sbjct: 791 HDARLIT-----ETNCQLWVVEEQSVSQIDGDFDDYKREV 825
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Rattus norvegicus (taxid: 10116) |
| >sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/580 (48%), Positives = 395/580 (68%), Gaps = 27/580 (4%)
Query: 134 ALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKR 193
A +D + SR ++LE N DI ++ FS++A GKEL + + I G+R
Sbjct: 241 AAENDFSVSQAEMSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVAGRR 293
Query: 194 YGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR 253
YGLVGPNG GK+TLLK +A R + +P NIDVLL EQEVV D+ A+QAV+ A + +KL
Sbjct: 294 YGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLL 353
Query: 254 EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM 313
EE LQ E GDD A ++L ++YE+L+ G+ AAEA+A +ILAGLGF EM
Sbjct: 354 EEERRLQGQL-----EQGDDT--AADRLEKVYEELRATGAAAAEAKARRILAGLGFDPEM 406
Query: 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVV 373
Q RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL++V
Sbjct: 407 QNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIV 466
Query: 374 SHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRS 433
SHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K K
Sbjct: 467 SHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAG 526
Query: 434 GNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTP 493
G +Q + + K A ++ K + K + +E + PE K+ ++Y+V F FP+P L+P
Sbjct: 527 GKSTKQ--AEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSP 584
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
P+L L V+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+PT GE
Sbjct: 585 PVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGE 643
Query: 554 VRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH 613
+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL SH H
Sbjct: 644 MRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLESHAH 698
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVS 673
I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++E+ G V++VS
Sbjct: 699 TIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVS 758
Query: 674 HDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
HD+RLI+ E ++WVVE +VS+ G F++YK ++
Sbjct: 759 HDARLIT-----ETNCQLWVVEEQSVSQIDGDFDDYKREV 793
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Sus scrofa (taxid: 9823) |
| >sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 282/580 (48%), Positives = 393/580 (67%), Gaps = 27/580 (4%)
Query: 134 ALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKR 193
A +D + SR ++LE N DI ++ FS++A GKEL + + I G+R
Sbjct: 271 AAENDFSVSQAEVSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVAGRR 323
Query: 194 YGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR 253
YGLVGPNG GK+TLLK +A R + +P NIDVLL EQEVV D+ A+QAV+ A + ++L
Sbjct: 324 YGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLRLL 383
Query: 254 EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM 313
EE LQ E GDD A EKL ++YE+L+ G+ AAEA+A +ILAGLGF EM
Sbjct: 384 EEERRLQGQL-----EQGDDT--AAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEM 436
Query: 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVV 373
Q RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL++V
Sbjct: 437 QNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIV 496
Query: 374 SHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRS 433
SHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K K
Sbjct: 497 SHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAG 556
Query: 434 GNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTP 493
G +Q + + K ++ K + K + +E + PE K+ ++Y+V F FP+P L+P
Sbjct: 557 GKSTKQ--AEKQTKEVLTRKQQKCRRKNQDEESQEPPELLKRPKEYTVRFTFPDPPPLSP 614
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
P+L L V+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+PT GE
Sbjct: 615 PVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGE 673
Query: 554 VRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH 613
+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL SH H
Sbjct: 674 MRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSF----NLPYQDA-RKCLGRFGLESHAH 728
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVS 673
I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++++ G V++VS
Sbjct: 729 TIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINDYKGAVIVVS 788
Query: 674 HDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
HD+RLI+ E ++WVVE VS+ G F++YK ++
Sbjct: 789 HDARLIT-----ETNCQLWVVEEQGVSQIDGDFDDYKREV 823
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Mus musculus (taxid: 10090) |
| >sp|Q8H0V6|AB3F_ARATH ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust.
Identities = 254/563 (45%), Positives = 358/563 (63%), Gaps = 33/563 (5%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP-VPKN 221
++DI +DNF+V+ G++L+ S+ +S G+ YGLVG NG GK+T L+ +A I +P N
Sbjct: 172 IRDIHMDNFNVSVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRYMAMHAIEGIPTN 231
Query: 222 IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREE---VASLQNSTSVDGEEDGDDANDAG 278
+L VEQEVVGD +A+Q V++ E KL EE + + Q T +DG D
Sbjct: 232 CQILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPTKDTV 291
Query: 279 E------KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLA 332
E +L E+Y++L + + AEA+A+ ILAGL FT EMQ + T +FSGGWRMRI+LA
Sbjct: 292 EGDLMSQRLEEIYKRLDAIDAYTAEARAASILAGLSFTPEMQLKATNTFSGGWRMRIALA 351
Query: 333 RALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392
RALF++P LLLLDEPTNHLDL AVLWLE YL +W KT +VVSH R+FLNTV T+IIHL +
Sbjct: 352 RALFIEPDLLLLDEPTNHLDLHAVLWLETYLTKWPKTFIVVSHAREFLNTVVTDIIHLQN 411
Query: 393 QKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAK 452
QKL Y+GN+D FE E++ K K FE E+ RS + +K + AK A+
Sbjct: 412 QKLSTYKGNYDIFERTREEQVKNQQKAFESSER-----SRSHMQAFIDKFRYNAKRASLV 466
Query: 453 EASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELT-PPLLQLIEVSFSYPNREDF 511
+ S+ KA ++ + + P DY +F FP P + PP++ + SF YP
Sbjct: 467 Q-SRIKALDRLAHVDQVINDP----DY--KFEFPTPDDKPGPPIISFSDASFGYPGGP-L 518
Query: 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVD 571
+++ GID+ +R+A+VGPNG GKST+L L++GDL P+ G V RS K+R+ +SQH VD
Sbjct: 519 LFRNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVD 578
Query: 572 LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFT 631
L + P+ Y++R +P G+ +Q+ +R+ LG G+ + L P+ LSGGQK+RV F
Sbjct: 579 GLDLSSNPLLYMMRCYP---GVPEQK-LRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFA 634
Query: 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEI 691
I+ KPH+LLLDEP+NHLD+ +++AL L F GG+ +VSHD LIS D E+
Sbjct: 635 KITFKKPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVD-----EL 689
Query: 692 WVVENGTVSRFPGTFEEYKEDLQ 714
WVV +G ++ F GTF +YK+ LQ
Sbjct: 690 WVVSDGRIAPFHGTFHDYKKLLQ 712
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/553 (43%), Positives = 355/553 (64%), Gaps = 33/553 (5%)
Query: 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
+DI I++ SV G +L+ + + +++G+RYGL+G NG GKSTLL + R+IP+P +D
Sbjct: 67 RDIRIESLSVTFHGYDLIVDSMLELNYGRRYGLLGLNGCGKSTLLTAIGRREIPIPDQMD 126
Query: 224 VLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAE 283
+ + E+ D S+++AVVS EE ++L +EV L ++DG GE+L
Sbjct: 127 IYHLSHEIEATDMSSLEAVVSCDEERLRLEKEVEILVQ------QDDG-----GGERLQS 175
Query: 284 LYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
+YE+L + ++ AE +A++IL GLGF KEMQ + TK FSGGWRMRI+LARALF+ PT+LL
Sbjct: 176 IYERLDAMDAETAEKRAAEILFGLGFDKEMQAKKTKDFSGGWRMRIALARALFIMPTILL 235
Query: 344 LDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFD 403
LDEPTNHLDL A +WLEE L + + LVVVSH +DFLN VCT IIH+ ++L +Y GNFD
Sbjct: 236 LDEPTNHLDLEACVWLEESLKNFDRILVVVSHSQDFLNGVCTNIIHMQSKQLKYYTGNFD 295
Query: 404 DFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKA-KGK 462
+ + + K++ ++Q+ K R K A+ A +KE + K +G
Sbjct: 296 QYCQTRSELEENQMKQYRWEQEQISHMKEYIARFGHGSAK-LARQAQSKEKTLAKMERGG 354
Query: 463 VDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSY-PNREDFKLSDVDVGID 521
+ E K RD + F F + +L PP+LQ +EVSF Y P+ +K ++D G+D
Sbjct: 355 LTE--------KVARDSVLVFRFADVGKLPPPVLQFVEVSFGYTPDYLIYK--NIDFGVD 404
Query: 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVS 581
+ +RVA+VGPNGAGKSTLL L+ G+L PTEG VRR L+I +Y QH + L +E +
Sbjct: 405 LDSRVALVGPNGAGKSTLLKLMTGELHPTEGMVRRHNHLKIAQYHQHLAEKLDLELPALL 464
Query: 582 YLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641
Y++R P E +E +RA +G+FGL + P+ LS GQ++RV+F ++ +P++L
Sbjct: 465 YMMREFPGTE----EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYKQPNML 520
Query: 642 LLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701
LLDEPTNHLD+++ID+LA+AL+E+ GG+VLVSHD RLI++V EIWV E +++
Sbjct: 521 LLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVA-----HEIWVCEKQCITK 575
Query: 702 FPGTFEEYKEDLQ 714
+ G ++K L+
Sbjct: 576 WNGDIMDFKRHLK 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8K268|ABCF3_MOUSE ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 272/625 (43%), Positives = 388/625 (62%), Gaps = 46/625 (7%)
Query: 107 SVTDKELKKREKKDMLAAHHAEQAKKEALRDDH-----DAFTVVIGSRT-SVLEGQDDAD 160
+V K+L+K E + L A ++++KE L+ + +A GSR S LE
Sbjct: 117 TVNAKKLEKAEAR--LKAKQEKRSEKETLKTSNPLVLEEASASQAGSRKESRLESSGKNK 174
Query: 161 ANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK 220
+ D+ I+NF V+ + LL V ++ G+RYGLVG NG+GK+TLLK+LA R + VP
Sbjct: 175 S--YDVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSLRVPA 232
Query: 221 NIDVLLVEQEVVGDDRSAIQAVV---SAHEELVKLREEVASLQNSTSVDGEEDGDDANDA 277
+I +L VEQEV GDD A+Q+V+ + E+L++ E+ SL+ + G +G +A
Sbjct: 233 HISLLHVEQEVAGDDTPALQSVLESDTVREDLLRQEREL-SLRIAA---GRAEGSEA--- 285
Query: 278 GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337
+LAE+Y KL+ + +D A A+AS ILAGLGFT +MQ +PT+ FSGGWRMR++LARALF
Sbjct: 286 -AQLAEIYGKLEEIEADKAPARASVILAGLGFTPKMQQQPTREFSGGWRMRLALARALFA 344
Query: 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397
+P LLLLDEPTN LD+RA+LWLE YL W T++VVSHDR+FLN + T+IIHLH Q+L
Sbjct: 345 RPDLLLLDEPTNMLDVRAILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDG 404
Query: 398 YRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKN 457
YRG+F+ F ++R +++E ++ R + DR + A + AS+
Sbjct: 405 YRGDFETFIKSKQERLLNQQREYEAQQQY---------RQHIQVFIDRFRYNANR-ASQV 454
Query: 458 KAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTE-LTPPLLQLIEVSFSY-PNREDFKLSD 515
++K K+ E LPE ++ V FP+ E +PP+LQL EV F Y P F S
Sbjct: 455 QSKLKMLEK--LPELKPVDKESEVVLKFPDGFEKFSPPILQLDEVDFYYDPKHSIF--SR 510
Query: 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575
+ V D+ +R+ +VG NGAGKST+L LL GDLSP G + L+IG +SQH V+ L +
Sbjct: 511 LSVSADLESRICVVGENGAGKSTMLKLLMGDLSPVRGIRHAHRNLKIGYFSQHHVEQLDL 570
Query: 576 EETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635
+ V L R P GL ++E R +LG++G+ + P+A LSGGQK+RV F ++M
Sbjct: 571 NVSAVELLARKFP---GLPEEE-YRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTM 626
Query: 636 SKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVE 695
P+ +LDEPTNHLDM++I+AL AL+ F GGV+LVSHD R I VC E+WV E
Sbjct: 627 PCPNFYILDEPTNHLDMETIEALGQALNNFRGGVILVSHDERFIRLVC-----KELWVCE 681
Query: 696 NGTVSRFPGTFEEYKEDLQREIKAE 720
NG+V+R G F++Y+ LQ + + E
Sbjct: 682 NGSVTRVEGGFDQYRALLQEQFRRE 706
|
Mus musculus (taxid: 10090) |
| >sp|Q9NUQ8|ABCF3_HUMAN ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 249/561 (44%), Positives = 351/561 (62%), Gaps = 36/561 (6%)
Query: 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
D+ I+NF V+ + LL V ++ G+RYGLVG NG+GK+TLLK+LA R + VP +I +
Sbjct: 177 DVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSLRVPAHISL 236
Query: 225 LLVEQEVVGDDRSAIQAVV---SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKL 281
L VEQEV GDD A+Q+V+ S E+L++ E+ + + +G E + L
Sbjct: 237 LHVEQEVAGDDTPALQSVLESDSVREDLLRRERELTAQIAAGRAEGSEAAE--------L 288
Query: 282 AELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
AE+Y KL+ + +D A A+AS ILAGLGFT +MQ +PT+ FSGGWRMR++LARALF +P L
Sbjct: 289 AEIYAKLEEIEADKAPARASVILAGLGFTPKMQQQPTREFSGGWRMRLALARALFARPDL 348
Query: 342 LLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401
LLLDEPTN LD+RA+LWLE YL W T++VVSHDR+FLN + T+IIHLH Q+L YRG+
Sbjct: 349 LLLDEPTNMLDVRAILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGD 408
Query: 402 FDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKG 461
F+ F ++R +++E ++ R + DR + A + AS+ ++K
Sbjct: 409 FETFIKSKQERLLNQQREYEAQQQY---------RQHIQVFIDRFRYNANR-ASQVQSKL 458
Query: 462 KVDEDEPLPEAPKKWRDYSVEFHFPEPTE-LTPPLLQLIEVSFSY-PNREDFKLSDVDVG 519
K+ E LPE ++ V FP+ E +PP+LQL EV F Y P F S + V
Sbjct: 459 KMLEK--LPELKPVDKESEVVMKFPDGFEKFSPPILQLDEVDFYYDPKHVIF--SRLSVS 514
Query: 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETP 579
D+ +R+ +VG NGAGKST+L LL GDL+P G + L+IG +SQH V+ L + +
Sbjct: 515 ADLESRICVVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSA 574
Query: 580 VSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639
V L R P + +E R +LG++G+ + P+A LSGGQK+RV F ++M P+
Sbjct: 575 VELLARKFPGR----PEEEYRHQLGRYGISGELAMRPLASLSGGQKSRVAFAQMTMPCPN 630
Query: 640 ILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+LDEPTNHLDM++I+AL AL+ F GGV+LVSHD R I VC E+WV E G V
Sbjct: 631 FYILDEPTNHLDMETIEALGRALNNFRGGVILVSHDERFIRLVC-----RELWVCEGGGV 685
Query: 700 SRFPGTFEEYKEDLQREIKAE 720
+R G F++Y+ LQ + + E
Sbjct: 686 TRVEGGFDQYRALLQEQFRRE 706
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 723 | ||||||
| 449468287 | 726 | PREDICTED: ABC transporter F family memb | 0.993 | 0.988 | 0.848 | 0.0 | |
| 449488281 | 726 | PREDICTED: ABC transporter F family memb | 0.993 | 0.988 | 0.846 | 0.0 | |
| 449453119 | 726 | PREDICTED: ABC transporter F family memb | 0.993 | 0.988 | 0.845 | 0.0 | |
| 255552969 | 727 | ATP-dependent transporter, putative [Ric | 0.997 | 0.991 | 0.840 | 0.0 | |
| 225463910 | 731 | PREDICTED: ABC transporter F family memb | 0.995 | 0.984 | 0.854 | 0.0 | |
| 147802383 | 731 | hypothetical protein VITISV_041068 [Viti | 0.995 | 0.984 | 0.854 | 0.0 | |
| 147770914 | 731 | hypothetical protein VITISV_001188 [Viti | 0.995 | 0.984 | 0.852 | 0.0 | |
| 52207936 | 728 | ABC transporter [Populus tremula x Popul | 0.997 | 0.990 | 0.827 | 0.0 | |
| 224100475 | 728 | ABC transporter family protein [Populus | 0.997 | 0.990 | 0.818 | 0.0 | |
| 147774739 | 732 | hypothetical protein VITISV_012252 [Viti | 0.995 | 0.983 | 0.847 | 0.0 |
| >gi|449468287|ref|XP_004151853.1| PREDICTED: ABC transporter F family member 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1254 bits (3246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/731 (84%), Positives = 672/731 (91%), Gaps = 13/731 (1%)
Query: 1 MGKKKSEEAGVAAK---SKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKSK 57
MG+KK+EE G K K+VS GK+EKLSVS MLASMD K+DKP+KGS+S K +
Sbjct: 1 MGRKKTEEGGGNTKVKPGKDVS--GKREKLSVSEMLASMDQKSDKPRKGSSSLGGGAKPQ 58
Query: 58 SKAVAK-PSYTDGIDLPPSDDEDDYALD----EEIDAKKQLHRQQKDESKQLEISVTDKE 112
+KA K +YTDGIDLPPSDDE++ + + ++K+L Q + E K LE++V+DKE
Sbjct: 59 AKAPKKVAAYTDGIDLPPSDDEEEEIVSDGEQQSTSSQKRLPWQDRAELKPLEVAVSDKE 118
Query: 113 LKKREKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFS 172
LKKRE+KDM AAH AEQA++EAL+DDHDAFTVVIGSR SVL+G D+ADANVKDITIDNFS
Sbjct: 119 LKKRERKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFS 178
Query: 173 VAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 232
V+ARGKELLK+ SV+ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV
Sbjct: 179 VSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 238
Query: 233 GDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG 292
GDDRSA+QAVVSA+EELVKLR+EVA LQNS DG +D +D +DAGE+LAELYEKLQ+LG
Sbjct: 239 GDDRSALQAVVSANEELVKLRQEVADLQNS---DGGQDENDDDDAGERLAELYEKLQLLG 295
Query: 293 SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SDAAEAQASKILAGLGFTK+MQ RPT+SFSGGWRMRISLARALFVQPTLLLLDEPTNHLD
Sbjct: 296 SDAAEAQASKILAGLGFTKDMQARPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 355
Query: 353 LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQR 412
LRAVLWLEEYLCRWKKTLVVVSHDRDFLN+VC EIIHLHD +LHFYRGNFDDFESGYEQR
Sbjct: 356 LRAVLWLEEYLCRWKKTLVVVSHDRDFLNSVCNEIIHLHDFRLHFYRGNFDDFESGYEQR 415
Query: 413 RKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEA 472
RKEMNKKFEIY+KQVKAAKRSG+R QQEKVKDRAK AAAKEASKNK+KGKVDEDEPLPEA
Sbjct: 416 RKEMNKKFEIYDKQVKAAKRSGSRAQQEKVKDRAKFAAAKEASKNKSKGKVDEDEPLPEA 475
Query: 473 PKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPN 532
P+KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDF+LSDVDVGIDMGTRVAIVGPN
Sbjct: 476 PRKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPN 535
Query: 533 GAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592
GAGKSTLLNLLAGDL PTEGEVRRSQKLRIGRYSQHFVDLLTMEETPV YLLRLHPDQEG
Sbjct: 536 GAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPDQEG 595
Query: 593 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652
LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQK+RVVFTSISMSKPHILLLDEPTNHLDM
Sbjct: 596 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDM 655
Query: 653 QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712
QSIDALADALDEFTGGVVLVSHDSRLISRVC+DEE+SEIWVVENGTV FPGTFEEYKE+
Sbjct: 656 QSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVENGTVEFFPGTFEEYKEE 715
Query: 713 LQREIKAEVDD 723
LQ+EIKAEVDD
Sbjct: 716 LQKEIKAEVDD 726
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449488281|ref|XP_004157989.1| PREDICTED: ABC transporter F family member 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1251 bits (3237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/731 (84%), Positives = 672/731 (91%), Gaps = 13/731 (1%)
Query: 1 MGKKKSEEAGVAAK---SKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKSK 57
MG+KK+EE G K K+VS GK+EKLSVS MLASMD K+DKP+KGS+S S K +
Sbjct: 1 MGRKKTEEGGGNTKVKPGKDVS--GKREKLSVSEMLASMDQKSDKPRKGSSSLSGGAKPQ 58
Query: 58 SKAVAKP-SYTDGIDLPPSDDEDDYALD----EEIDAKKQLHRQQKDESKQLEISVTDKE 112
+KA K +YTDGIDLPPSDDE++ + + ++K+L Q + E K LE++V+DKE
Sbjct: 59 AKAPKKVVAYTDGIDLPPSDDEEEEIVSDGEQQSTSSQKRLPWQDRAELKPLEVAVSDKE 118
Query: 113 LKKREKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFS 172
LKKRE+KDM AAH AEQA++EAL+DDHDAFTVVIGSR SVL+G D+ADANVKDITIDNFS
Sbjct: 119 LKKRERKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFS 178
Query: 173 VAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 232
V+ARGKELLK+ SV+ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV
Sbjct: 179 VSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 238
Query: 233 GDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG 292
GDDRSA+QAVVSA+EELVKLR+EVA LQNS DG +D +D +DAGE+LAELYEKLQ+LG
Sbjct: 239 GDDRSALQAVVSANEELVKLRQEVADLQNS---DGGQDENDDDDAGERLAELYEKLQLLG 295
Query: 293 SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SDAAE+QASKILAGLGFTK+MQ RPT+SFSGGWRMRISLARALFVQPTLLLLDEPTNHLD
Sbjct: 296 SDAAESQASKILAGLGFTKDMQARPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 355
Query: 353 LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQR 412
LRAVLWLEEYLCRWKKTLVVVSHDRDFLN+VC EIIHLHD +LHFYRGNFDDFESGYEQR
Sbjct: 356 LRAVLWLEEYLCRWKKTLVVVSHDRDFLNSVCNEIIHLHDFRLHFYRGNFDDFESGYEQR 415
Query: 413 RKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEA 472
RKEMNKKFEIY+KQVKAAKRSG+R QQEKVKDRAK AAAKEASKNK+KGKVDED PLPEA
Sbjct: 416 RKEMNKKFEIYDKQVKAAKRSGSRAQQEKVKDRAKFAAAKEASKNKSKGKVDEDGPLPEA 475
Query: 473 PKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPN 532
P+KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDF+LSDVDVGIDMGTRVAIVGPN
Sbjct: 476 PRKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPN 535
Query: 533 GAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592
GAGKSTLLNLLAGDL PTEGEVRRSQKLRIGRYSQHFVDLLTMEETPV YLLRLHPDQEG
Sbjct: 536 GAGKSTLLNLLAGDLIPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPDQEG 595
Query: 593 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652
LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQK+RVVFTSISMSKPHILLLDEPTNHLDM
Sbjct: 596 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDM 655
Query: 653 QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712
QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEE+SEIWVVENGTV FPGTFEEYKE+
Sbjct: 656 QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEEKSEIWVVENGTVEFFPGTFEEYKEE 715
Query: 713 LQREIKAEVDD 723
LQ++IKAEVDD
Sbjct: 716 LQKQIKAEVDD 726
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453119|ref|XP_004144306.1| PREDICTED: ABC transporter F family member 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1249 bits (3232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/731 (84%), Positives = 672/731 (91%), Gaps = 13/731 (1%)
Query: 1 MGKKKSEEAGVAAK---SKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKSK 57
MG+KK+EE G K K+VS GK+EKLSVS MLASMD K+DKP+KGS+S S K +
Sbjct: 1 MGRKKTEEGGGNTKVKPGKDVS--GKREKLSVSEMLASMDQKSDKPRKGSSSLSGGAKPQ 58
Query: 58 SKAVAKP-SYTDGIDLPPSDDEDDYALD----EEIDAKKQLHRQQKDESKQLEISVTDKE 112
+KA K +YTDGIDLPPSDDE++ + + ++K+L Q + E K LE++V+DKE
Sbjct: 59 AKAPKKVVAYTDGIDLPPSDDEEEEIVSDGEQQSTSSQKRLPWQDRAELKPLEVAVSDKE 118
Query: 113 LKKREKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFS 172
LKKRE+KDM AAH AEQA++EAL+DDHDAFTVVIGSR SVL+G D+ADANVKDITIDNFS
Sbjct: 119 LKKRERKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFS 178
Query: 173 VAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 232
V+ARGKELLK+ SV+ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV
Sbjct: 179 VSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 238
Query: 233 GDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG 292
GDDRSA+QAVVSA+EELVKLR+EVA LQNS DG +D +D +DAGE+LAELYEKLQ+LG
Sbjct: 239 GDDRSALQAVVSANEELVKLRQEVADLQNS---DGGQDENDDDDAGERLAELYEKLQLLG 295
Query: 293 SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SDAAE+QASKILAGLGFTK+MQ RPT+SFSGGWRMRISLARALFVQPTLLLLDEPTNHLD
Sbjct: 296 SDAAESQASKILAGLGFTKDMQARPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 355
Query: 353 LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQR 412
LRAVLWLEEYLCRWKKTLVVVSHDRDFLN+VC EIIHLHD +LHFYRGNFDDFESGYEQR
Sbjct: 356 LRAVLWLEEYLCRWKKTLVVVSHDRDFLNSVCNEIIHLHDFRLHFYRGNFDDFESGYEQR 415
Query: 413 RKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEA 472
RKEMNKKFEIY+KQVKAAKRSG+R QQEKVKDRAK AAAKEASKNK+KGKVDED PLPEA
Sbjct: 416 RKEMNKKFEIYDKQVKAAKRSGSRAQQEKVKDRAKFAAAKEASKNKSKGKVDEDGPLPEA 475
Query: 473 PKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPN 532
P+KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDF+LSDVDVGIDMGTRVAIVGPN
Sbjct: 476 PRKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPN 535
Query: 533 GAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592
GAGKSTLLNLLAGDL PTEGEVRRSQKLRIGRYSQHFVDLLTMEETPV YLLRLHPDQEG
Sbjct: 536 GAGKSTLLNLLAGDLIPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPDQEG 595
Query: 593 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652
LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQK+RVVFTSISMSKPHILLLDEPTNHLDM
Sbjct: 596 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDM 655
Query: 653 QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712
QSIDALADALDEFTGGVVLVSHDSRLISRVC+DEE+SEIWVVENGTV FPGTFEEYKE+
Sbjct: 656 QSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVENGTVEFFPGTFEEYKEE 715
Query: 713 LQREIKAEVDD 723
LQ++IKAEVDD
Sbjct: 716 LQKQIKAEVDD 726
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552969|ref|XP_002517527.1| ATP-dependent transporter, putative [Ricinus communis] gi|223543159|gb|EEF44691.1| ATP-dependent transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/729 (84%), Positives = 669/729 (91%), Gaps = 8/729 (1%)
Query: 1 MGKKKSEEAGVAAKSKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKSKSKA 60
MGKKK+E+ G A K+K +K+GKKEK+S++++L + K +KPKKGSTSSS + K+ +
Sbjct: 1 MGKKKTEDGGGATKAKPSNKEGKKEKVSIASLLIGAEQKPEKPKKGSTSSSGTTKTMASK 60
Query: 61 VAKPSYTDGIDLPPSDDE----DDYALDEEIDAKKQLHRQQKDESKQLEISVTDKELKKR 116
++ SY DGIDLPP ++E DY ++ +KQ + QQ+++ K L+ SVTDKELKKR
Sbjct: 61 LS--SYIDGIDLPPEEEEDDDASDYMEQQQAGGRKQSNGQQRNQGKPLDTSVTDKELKKR 118
Query: 117 EKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAAR 176
EKKDMLAA EQAK+EAL+DDHDAFTVVIGSR SVLEG+DDADANVKDITI+NFSVAAR
Sbjct: 119 EKKDMLAAQALEQAKREALKDDHDAFTVVIGSRASVLEGEDDADANVKDITIENFSVAAR 178
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
GKELLK+ SV+ISHGKRYGLVGPNG GKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD+
Sbjct: 179 GKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDK 238
Query: 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDD--ANDAGEKLAELYEKLQILGSD 294
+A++AVV+A+EEL+K+R+EVASLQNSTS +E+G+D +D GEKLAELYE LQILGSD
Sbjct: 239 TALEAVVAANEELLKVRQEVASLQNSTSAAADENGNDLDGDDVGEKLAELYENLQILGSD 298
Query: 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
AAEAQASKILAGLGFTK+MQ RPT+SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR
Sbjct: 299 AAEAQASKILAGLGFTKDMQSRPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 358
Query: 355 AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRK 414
AVLWLEEYLCRWKKTLVVVSHDRDFLNTVC EIIHLHD KLH YRGNFDDFESGYEQRRK
Sbjct: 359 AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCNEIIHLHDLKLHIYRGNFDDFESGYEQRRK 418
Query: 415 EMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPK 474
EMNKKFEIY+KQVKAAKRSGNR QQEKVKDRAK AAAKEASKNKAKGK DEDEPLPEAPK
Sbjct: 419 EMNKKFEIYDKQVKAAKRSGNRAQQEKVKDRAKFAAAKEASKNKAKGKADEDEPLPEAPK 478
Query: 475 KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGA 534
KW+DYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDF+LS+VDVGIDMGTRVAIVGPNGA
Sbjct: 479 KWKDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGA 538
Query: 535 GKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS 594
GKSTLLNLLAGDL PTEGEVRRSQKLRIGRYSQHFVDLLTM+ETPV YLLRLHPDQEGLS
Sbjct: 539 GKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLS 598
Query: 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 654
KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL+LDEPTNHLDMQS
Sbjct: 599 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILMLDEPTNHLDMQS 658
Query: 655 IDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQ 714
IDALADALDEFTGGVVLVSHDSRLISRVC+DEERSEIWVVENGTV FPGTFEEYKE+LQ
Sbjct: 659 IDALADALDEFTGGVVLVSHDSRLISRVCEDEERSEIWVVENGTVMNFPGTFEEYKEELQ 718
Query: 715 REIKAEVDD 723
REIKAEVDD
Sbjct: 719 REIKAEVDD 727
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463910|ref|XP_002266211.1| PREDICTED: ABC transporter F family member 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/734 (85%), Positives = 680/734 (92%), Gaps = 14/734 (1%)
Query: 1 MGKKKSEEAGVAAK----SKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKS 56
MG+KK+E++G K +K+ SKDGKKEKLSVSAMLASMD K+DKPKKGS+SSST+
Sbjct: 1 MGRKKTEDSGATTKVKPSNKDASKDGKKEKLSVSAMLASMDQKSDKPKKGSSSSSTTTSK 60
Query: 57 K-SKAVAK-PSYTDGIDLPPSDDEDDYALDEEIDAKKQLHRQQKDESKQLEISVTDKELK 114
+KA K PSYT IDLPPSDDEDD A E DA+ L RQQ+ E K L+ISVT+KELK
Sbjct: 61 PKAKAAPKLPSYTADIDLPPSDDEDD-AYSSEEDAR--LKRQQRAELKTLDISVTEKELK 117
Query: 115 KREKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVA 174
KREKKDMLA H ++QA++EAL+DDHDAFTVVIGSR SVL+G+D+ADANVKD+TI+NFSV+
Sbjct: 118 KREKKDMLAVHASQQARQEALKDDHDAFTVVIGSRASVLDGEDEADANVKDVTIENFSVS 177
Query: 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234
ARGKELLK+ SV+ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV+GD
Sbjct: 178 ARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGD 237
Query: 235 DRSAIQAVVSAHEELVKLREEVASL---QNSTSVDGEEDGDD--ANDAGEKLAELYEKLQ 289
D +A+QAV+SA+EELV+LR+EVASL QNS++ +ED +D +D GEKLAELYE LQ
Sbjct: 238 DNTALQAVISANEELVRLRQEVASLDSLQNSSAATCDEDENDVSGDDVGEKLAELYENLQ 297
Query: 290 ILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN 349
+LGSDAAEAQASKILAGLGFTK+MQGR T+SFSGGWRMRISLARALFVQPTLLLLDEPTN
Sbjct: 298 LLGSDAAEAQASKILAGLGFTKDMQGRATRSFSGGWRMRISLARALFVQPTLLLLDEPTN 357
Query: 350 HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGY 409
HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVC+EIIHLHDQKLHFYRGNFDDFESGY
Sbjct: 358 HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDQKLHFYRGNFDDFESGY 417
Query: 410 EQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPL 469
EQRRKEMNKKFEIY+KQVKAAKR+GNRVQQEKVKDRAK AAAKEASKNKAKGKVD+DEP
Sbjct: 418 EQRRKEMNKKFEIYDKQVKAAKRTGNRVQQEKVKDRAKFAAAKEASKNKAKGKVDDDEPP 477
Query: 470 PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIV 529
PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDF+LSDVDVGIDMGTRVAIV
Sbjct: 478 PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIV 537
Query: 530 GPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPD 589
GPNGAGKSTLLNLLAGDL PTEGEVRRSQKLRIGRYSQHFVDLLTM+ETPV YLLRLHPD
Sbjct: 538 GPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPD 597
Query: 590 QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH 649
QEGLSKQEAVRAKLGKFGLPSHNHLTPI KLSGGQKARVVFTSISMSKPHILLLDEPTNH
Sbjct: 598 QEGLSKQEAVRAKLGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTNH 657
Query: 650 LDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709
LDMQSIDALADALDEF+GGVVLVSHDSRLISRVC++EERSEIWVVENGTVS FPG+FEEY
Sbjct: 658 LDMQSIDALADALDEFSGGVVLVSHDSRLISRVCENEERSEIWVVENGTVSSFPGSFEEY 717
Query: 710 KEDLQREIKAEVDD 723
KE+LQREIKAEVDD
Sbjct: 718 KEELQREIKAEVDD 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802383|emb|CAN68174.1| hypothetical protein VITISV_041068 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/734 (85%), Positives = 680/734 (92%), Gaps = 14/734 (1%)
Query: 1 MGKKKSEEAGVAAK----SKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKS 56
MG+KK+E++G K +K+ SKDGKKEKLSVSAMLASMD K+DKPKKGS+SSST+
Sbjct: 1 MGRKKTEDSGATTKVKPSNKDASKDGKKEKLSVSAMLASMDQKSDKPKKGSSSSSTTTSK 60
Query: 57 K-SKAVAK-PSYTDGIDLPPSDDEDDYALDEEIDAKKQLHRQQKDESKQLEISVTDKELK 114
+KA K PSYT IDLPPSDDEDD A E DA+ L RQQ+ E K L+I VT+KELK
Sbjct: 61 PKAKAAPKLPSYTADIDLPPSDDEDD-AYSSEEDAR--LKRQQRAEXKTLDIXVTEKELK 117
Query: 115 KREKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVA 174
KREKKDMLA H ++QA++EAL+DDHDAFTVVIGSR SVL+G+D+ADANVKD+TI+NFSV+
Sbjct: 118 KREKKDMLAVHASQQARQEALKDDHDAFTVVIGSRASVLDGEDEADANVKDVTIENFSVS 177
Query: 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234
ARGKELLK+ SV+ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV+GD
Sbjct: 178 ARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGD 237
Query: 235 DRSAIQAVVSAHEELVKLREEVASL---QNSTSVDGEEDGDDA--NDAGEKLAELYEKLQ 289
D +A+QAV+SA+EELV+LR+EVASL QNS++ +ED +DA +D GEKLAELYE LQ
Sbjct: 238 DNTALQAVISANEELVRLRQEVASLDSLQNSSAATCDEDENDASGDDVGEKLAELYENLQ 297
Query: 290 ILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN 349
+LGSDAAEAQASKILAGLGFTK+MQGR T+SFSGGWRMRISLARALFVQPTLLLLDEPTN
Sbjct: 298 LLGSDAAEAQASKILAGLGFTKDMQGRATRSFSGGWRMRISLARALFVQPTLLLLDEPTN 357
Query: 350 HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGY 409
HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVC+EIIHLHDQKLHFYRGNFDDFESGY
Sbjct: 358 HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDQKLHFYRGNFDDFESGY 417
Query: 410 EQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPL 469
EQRRKEMNKKFEIY+KQVKAAKR+GNRVQQEKVKDRAK AAAKEASKNKAKGKVD+DEP
Sbjct: 418 EQRRKEMNKKFEIYDKQVKAAKRTGNRVQQEKVKDRAKFAAAKEASKNKAKGKVDDDEPP 477
Query: 470 PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIV 529
PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDF+LSDVDVGIDMGTRVAIV
Sbjct: 478 PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIV 537
Query: 530 GPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPD 589
GPNGAGKSTLLNLLAGDL PTEGEVRRSQKLRIGRYSQHFVDLLTM+ETPV YLLRLHPD
Sbjct: 538 GPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPD 597
Query: 590 QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH 649
QEGLSKQEAVRAKLGKFGLPSHNHLTPI KLSGGQKARVVFTSISMSKPHILLLDEPTNH
Sbjct: 598 QEGLSKQEAVRAKLGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTNH 657
Query: 650 LDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709
LDMQSIDALADALDEF+GGVVLVSHDSRLISRVC++EERSEIWVVENGTVS FPG+FEEY
Sbjct: 658 LDMQSIDALADALDEFSGGVVLVSHDSRLISRVCENEERSEIWVVENGTVSSFPGSFEEY 717
Query: 710 KEDLQREIKAEVDD 723
KE+LQREIKAEVDD
Sbjct: 718 KEELQREIKAEVDD 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147770914|emb|CAN74169.1| hypothetical protein VITISV_001188 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1219 bits (3155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/734 (85%), Positives = 679/734 (92%), Gaps = 14/734 (1%)
Query: 1 MGKKKSEEAGVAAK----SKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKS 56
MG+KK+E++G K +K+ SKDGKKEKLSVSAMLASMD K+DKPKKGS+SSST+
Sbjct: 1 MGRKKTEDSGATTKVKPSNKDASKDGKKEKLSVSAMLASMDQKSDKPKKGSSSSSTTTSK 60
Query: 57 K-SKAVAK-PSYTDGIDLPPSDDEDDYALDEEIDAKKQLHRQQKDESKQLEISVTDKELK 114
+KA K PSYT IDLPPSDDEDD A E DA+ L RQQ+ E K L+I VT+KELK
Sbjct: 61 PKAKAAPKLPSYTADIDLPPSDDEDD-AYSSEEDAR--LKRQQRAEXKTLDIXVTEKELK 117
Query: 115 KREKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVA 174
KREKKDMLA H ++QA++EAL+DDHDAFTVVIGSR SVL+G+D+ADANVKD+TI+NFSV+
Sbjct: 118 KREKKDMLAVHASQQARQEALKDDHDAFTVVIGSRASVLDGEDEADANVKDVTIENFSVS 177
Query: 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234
ARGKELLK+ SV+ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV+GD
Sbjct: 178 ARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGD 237
Query: 235 DRSAIQAVVSAHEELVKLREEVASL---QNSTSVDGEEDGDD--ANDAGEKLAELYEKLQ 289
D +A+QAV+SA+EELV+LR+EVASL QNS++ +ED +D +D GEKLAELYE LQ
Sbjct: 238 DNTALQAVISANEELVRLRQEVASLDSLQNSSAATCDEDENDXSGDDVGEKLAELYENLQ 297
Query: 290 ILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN 349
+LGSDAAEAQASKILAGLGFTK+MQGR T+SFSGGWRMRISLARALFVQPTLLLLDEPTN
Sbjct: 298 LLGSDAAEAQASKILAGLGFTKDMQGRATRSFSGGWRMRISLARALFVQPTLLLLDEPTN 357
Query: 350 HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGY 409
HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVC+EIIHLHDQKLHFYRGNFDDFESGY
Sbjct: 358 HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDQKLHFYRGNFDDFESGY 417
Query: 410 EQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPL 469
EQRRKEMNKKFEIY+KQVKAAKR+GNRVQQEKVKDRAK AAAKEASKNKAKGKVD+DEP
Sbjct: 418 EQRRKEMNKKFEIYDKQVKAAKRTGNRVQQEKVKDRAKFAAAKEASKNKAKGKVDDDEPP 477
Query: 470 PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIV 529
PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDF+LSDVDVGIDMGTRVAIV
Sbjct: 478 PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIV 537
Query: 530 GPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPD 589
GPNGAGKSTLLNLLAGDL PTEGEVRRSQKLRIGRYSQHFVDLLTM+ETPV YLLRLHPD
Sbjct: 538 GPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPD 597
Query: 590 QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH 649
QEGLSKQEAVRAKLGKFGLPSHNHLTPI KLSGGQKARVVFTSISMSKPHILLLDEPTNH
Sbjct: 598 QEGLSKQEAVRAKLGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTNH 657
Query: 650 LDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709
LDMQSIDALADALDEF+GGVVLVSHDSRLISRVC++EERSEIWVVENGTVS FPG+FEEY
Sbjct: 658 LDMQSIDALADALDEFSGGVVLVSHDSRLISRVCENEERSEIWVVENGTVSSFPGSFEEY 717
Query: 710 KEDLQREIKAEVDD 723
KE+LQREIKAEVDD
Sbjct: 718 KEELQREIKAEVDD 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|52207936|emb|CAE47098.1| ABC transporter [Populus tremula x Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 1200 bits (3105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/730 (82%), Positives = 667/730 (91%), Gaps = 9/730 (1%)
Query: 1 MGKKKSEEA-GVAAKSKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKSKSK 59
MGKK+ E+A G +K+K +KD KKEKLSV+AMLASMD K DKPKKGS+S+ TS K K K
Sbjct: 1 MGKKQKEDASGAPSKAKAGNKDAKKEKLSVTAMLASMDQKPDKPKKGSSSTVTSSKPKPK 60
Query: 60 AVAKPSYTDGIDLPPSDDEDDYALDEEIDAKKQLHR---QQKDESKQLEISVTDKELKKR 116
+ PSYTDGIDLPPSDDE++ EE + ++ Q++ E K L+++++DKELKKR
Sbjct: 61 SA--PSYTDGIDLPPSDDEEEPNGLEEEQQQNDPNKRPSQRRSELKPLDVAISDKELKKR 118
Query: 117 EKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAAR 176
EKK++LAAH E A++EAL+DDHDAFTVVIGSR SVL+G+D+ DANVKDITI+NFSV+AR
Sbjct: 119 EKKELLAAHAIEHARQEALKDDHDAFTVVIGSRASVLDGEDEGDANVKDITIENFSVSAR 178
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
GKELLK+ SV+I+HG+RYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV+GDD+
Sbjct: 179 GKELLKNASVKIAHGRRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGDDK 238
Query: 237 SAIQAVVSAHEELVKLREEVASLQNSTS-VDGEEDGDDAN--DAGEKLAELYEKLQILGS 293
+A+QAVVSA+EELVKLREEVASLQ S +GE +GDD + DAGE+LAELYEKLQ++GS
Sbjct: 239 TALQAVVSANEELVKLREEVASLQKSDGPAEGENNGDDYDEDDAGERLAELYEKLQLMGS 298
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
DAAE+QASKILAGLGFTK+MQGRPT+SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL
Sbjct: 299 DAAESQASKILAGLGFTKDMQGRPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 358
Query: 354 RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRR 413
RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVC +IIHLHDQKL YRGNFDDFE GYEQRR
Sbjct: 359 RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCNDIIHLHDQKLDSYRGNFDDFEVGYEQRR 418
Query: 414 KEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAP 473
KE NKKFEIY+KQ+KAAKRSGNRVQQEKVKDRAK AA KEA+KNK + KVDED+ PEAP
Sbjct: 419 KETNKKFEIYDKQMKAAKRSGNRVQQEKVKDRAKFAATKEAAKNKGRAKVDEDQAAPEAP 478
Query: 474 KKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNG 533
+KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLS+VDVGIDMGTRVAIVGPNG
Sbjct: 479 RKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSNVDVGIDMGTRVAIVGPNG 538
Query: 534 AGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL 593
AGKSTLLNLLAGDL PTEGEVRRSQKLRIGRYSQHFVDLLTM+ETPV YLLRLHPDQEGL
Sbjct: 539 AGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGL 598
Query: 594 SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
SKQEAVR KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ
Sbjct: 599 SKQEAVRGKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 658
Query: 654 SIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
SIDALADALDEFTGGVVLVSHDSRLISRVCDDEE+SEIWVVE+GTV+ FPGTFE YKE+L
Sbjct: 659 SIDALADALDEFTGGVVLVSHDSRLISRVCDDEEKSEIWVVEDGTVTAFPGTFELYKEEL 718
Query: 714 QREIKAEVDD 723
Q+EIKAEVDD
Sbjct: 719 QKEIKAEVDD 728
|
Source: Populus tremula x Populus tremuloides Species: Populus tremula x Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100475|ref|XP_002311891.1| ABC transporter family protein [Populus trichocarpa] gi|222851711|gb|EEE89258.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1192 bits (3084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/729 (81%), Positives = 665/729 (91%), Gaps = 8/729 (1%)
Query: 1 MGKKKSEEA-GVAAKSKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKSKSK 59
MGKK E+A G +K+K +KDGKKEKLSV+AMLASMD K DKPKKGS+S+ TS K K +
Sbjct: 1 MGKKPKEDASGAPSKAKASNKDGKKEKLSVTAMLASMDQKPDKPKKGSSSTLTSSKPKPR 60
Query: 60 AVAKPSYTDGIDLPPSDDE-DDYALDEEI--DAKKQLHRQQKDESKQLEISVTDKELKKR 116
+ PSYTDGIDLPPSDDE + L+EE D + Q++ E K L+++++DKELKKR
Sbjct: 61 SA--PSYTDGIDLPPSDDEVEGQGLEEEQQQDGTNKRTNQRRSELKPLDVALSDKELKKR 118
Query: 117 EKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAAR 176
EKK++L AH + AK+EAL+DDHDAFTVVIGSR SVL+G+D+ DANVKDITI+NFSV+AR
Sbjct: 119 EKKELLTAHAIKHAKQEALKDDHDAFTVVIGSRASVLDGEDEGDANVKDITIENFSVSAR 178
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
G ELLK+ SV+I+HG+RYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV+GDD+
Sbjct: 179 GNELLKNASVKIAHGRRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGDDK 238
Query: 237 SAIQAVVSAHEELVKLREEVASLQNST-SVDGEEDG-DDANDAGEKLAELYEKLQILGSD 294
+A+QAVVSA+EELVKLREEV+ LQ ST + +GE +G DD +DAGE+LAELY+KLQ++GSD
Sbjct: 239 TALQAVVSANEELVKLREEVSLLQKSTFAAEGENNGGDDEDDAGERLAELYDKLQLMGSD 298
Query: 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
AAE+QASKILAGLGFTK+MQGRPT+SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR
Sbjct: 299 AAESQASKILAGLGFTKDMQGRPTRSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 358
Query: 355 AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRK 414
AVLWLEEYLCRWKKT+VVVSHDRDFLNTVC ++IHLHDQKL YRGNF+DFE GYEQRRK
Sbjct: 359 AVLWLEEYLCRWKKTVVVVSHDRDFLNTVCNDVIHLHDQKLDSYRGNFNDFEVGYEQRRK 418
Query: 415 EMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPK 474
E NKKFEIY KQ+KAAKRSG+RVQQEKVKDRAK AAAKE +KNK KGKVDED+ PEAPK
Sbjct: 419 ETNKKFEIYNKQMKAAKRSGSRVQQEKVKDRAKFAAAKETAKNKGKGKVDEDQAPPEAPK 478
Query: 475 KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGA 534
KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNR+DFKLS+VDVGIDMGTRVAIVGPNGA
Sbjct: 479 KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNRDDFKLSNVDVGIDMGTRVAIVGPNGA 538
Query: 535 GKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS 594
GKSTLLNLLAGDL P+EGEVRRSQKLRIGRYSQHFVDLLTM+ETPV YLL LHPDQEGLS
Sbjct: 539 GKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLYLHPDQEGLS 598
Query: 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 654
KQEAVR KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS
Sbjct: 599 KQEAVRGKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 658
Query: 655 IDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQ 714
IDAL DALDEFTGGVVLVSHDSRLISRVC+DEE+SEIWVVE+GTV+ +PGTFEEYKE+LQ
Sbjct: 659 IDALGDALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEDGTVTSYPGTFEEYKEELQ 718
Query: 715 REIKAEVDD 723
REIKAEVDD
Sbjct: 719 REIKAEVDD 727
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147774739|emb|CAN74780.1| hypothetical protein VITISV_012252 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1192 bits (3084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/735 (84%), Positives = 677/735 (92%), Gaps = 15/735 (2%)
Query: 1 MGKKKSEEAGVAAK----SKEVSKDGKKEKLSVSAMLASMDPKADKPKKGSTSSSTSGKS 56
MG+KK+E++G K +K+ +KDGKKEKLSVSAMLASMD K+DKPKKGS+SSST+
Sbjct: 1 MGRKKTEDSGATTKVKXSNKDAAKDGKKEKLSVSAMLASMDQKSDKPKKGSSSSSTTSSK 60
Query: 57 K-SKAVAK-PSYTDGIDLPPSDDEDDYALDEEIDAKKQLHRQQKDESKQLEISVTDKELK 114
+KA K PSYT IDLPPSDDEDD EE DA+ L RQQ+ E K L+IS+T+KELK
Sbjct: 61 PKAKAAPKLPSYTADIDLPPSDDEDDVYSSEE-DAR--LKRQQRAEQKTLDISITEKELK 117
Query: 115 KREKKDMLAAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVA 174
KREKKDMLAAH A+QA +EAL+DDHDAFTVVIGSR SVL+G+D+ADANVKDITI+NFSV+
Sbjct: 118 KREKKDMLAAHVAQQAXQEALKDDHDAFTVVIGSRASVLDGEDEADANVKDITIENFSVS 177
Query: 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234
ARGKELLK+ SV+ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV+GD
Sbjct: 178 ARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVIGD 237
Query: 235 DRSAIQAVVSAHEELVKLREEVASL---QNSTSVDGEEDGDD---ANDAGEKLAELYEKL 288
D++A+QAV+SA+EELV+LR+EVASL QNS++ +ED D +D GEKLAELYEKL
Sbjct: 238 DKTALQAVISANEELVRLRQEVASLDSLQNSSAATCDEDEKDDVSGDDVGEKLAELYEKL 297
Query: 289 QILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
Q+LGSDAAEAQASKILAGLGFTKEMQGR T+SFSGGWRMRISLARALFVQPTLLLLDEPT
Sbjct: 298 QLLGSDAAEAQASKILAGLGFTKEMQGRVTRSFSGGWRMRISLARALFVQPTLLLLDEPT 357
Query: 349 NHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESG 408
NHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVC+EIIHLHDQKLHFYRGNFDDFESG
Sbjct: 358 NHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDQKLHFYRGNFDDFESG 417
Query: 409 YEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEP 468
YEQ RKEMNKKFEI++KQVKAAKR+GNRVQQEKVKDRAK AAAKEASKNKAKGKVD+DE
Sbjct: 418 YEQCRKEMNKKFEIHDKQVKAAKRTGNRVQQEKVKDRAKFAAAKEASKNKAKGKVDDDES 477
Query: 469 LPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAI 528
PEAPKKWRDYSVEFHFP+PTELTPPLLQLIEVSFSYPNREDF+LS+VDVGIDMGTRVAI
Sbjct: 478 PPEAPKKWRDYSVEFHFPQPTELTPPLLQLIEVSFSYPNREDFRLSEVDVGIDMGTRVAI 537
Query: 529 VGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHP 588
VGPNGAGKSTLLNLLAGDL P EGEVRRSQKLRIGRYSQHFVDLLTM+ETPV YLLRLHP
Sbjct: 538 VGPNGAGKSTLLNLLAGDLVPMEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHP 597
Query: 589 DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN 648
DQEGLSKQEAVRAKLGKFGLPSHNHLTPI KLSGGQKARVVFTSISMSKPHILLLDEPTN
Sbjct: 598 DQEGLSKQEAVRAKLGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTN 657
Query: 649 HLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
HLDMQSIDALADALDEF+GGVVLVSHDSRLISRVC+DEE+SEIWVVENGTVS FP +FEE
Sbjct: 658 HLDMQSIDALADALDEFSGGVVLVSHDSRLISRVCNDEEKSEIWVVENGTVSSFPESFEE 717
Query: 709 YKEDLQREIKAEVDD 723
YKE+LQREIKAEVDD
Sbjct: 718 YKEELQREIKAEVDD 732
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 723 | ||||||
| TAIR|locus:505006397 | 723 | ABCF4 "ATP-binding cassette F4 | 0.990 | 0.990 | 0.753 | 2.1e-283 | |
| ZFIN|ZDB-GENE-050517-31 | 877 | abcf1 "ATP-binding cassette, s | 0.849 | 0.700 | 0.432 | 5e-138 | |
| UNIPROTKB|E1BGH0 | 845 | ABCF1 "Uncharacterized protein | 0.847 | 0.725 | 0.433 | 8.1e-136 | |
| UNIPROTKB|Q8NE71 | 845 | ABCF1 "ATP-binding cassette su | 0.834 | 0.713 | 0.434 | 1.3e-135 | |
| UNIPROTKB|Q7YR37 | 807 | ABCF1 "ATP-binding cassette su | 0.817 | 0.732 | 0.440 | 3.1e-134 | |
| UNIPROTKB|K7GL02 | 842 | ABCF1 "ATP-binding cassette, s | 0.849 | 0.729 | 0.430 | 1.8e-133 | |
| MGI|MGI:1351658 | 837 | Abcf1 "ATP-binding cassette, s | 0.849 | 0.733 | 0.431 | 3.7e-133 | |
| UNIPROTKB|Q767L0 | 807 | ABCF1 "ATP-binding cassette su | 0.817 | 0.732 | 0.441 | 6e-133 | |
| UNIPROTKB|F6Y789 | 841 | ABCF1 "Uncharacterized protein | 0.847 | 0.728 | 0.431 | 7.6e-133 | |
| UNIPROTKB|J9NXH0 | 787 | ABCF1 "Uncharacterized protein | 0.847 | 0.778 | 0.431 | 7.6e-133 |
| TAIR|locus:505006397 ABCF4 "ATP-binding cassette F4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2723 (963.6 bits), Expect = 2.1e-283, P = 2.1e-283
Identities = 550/730 (75%), Positives = 594/730 (81%)
Query: 1 MGKKKSEEAGVAAK----SKEVSKDGKKEKLSVSAMLASMDPKADXXXXXXXXXXXXXXX 56
MGKKKS+E+ K K+ SKD KKEKLSVSAMLA MD K D
Sbjct: 1 MGKKKSDESAATTKVKPSGKDASKDSKKEKLSVSAMLAGMDQKDDKPKKGSSSRTKAAPK 60
Query: 57 XXXXXXXXXYTDGIDLPPSDDEDDYALDEEIDAKKQLHRQQKDESKQLEISVTDKELKKR 116
YTDGIDLPPSD+EDD DEE + +K+ R+ K E + LEISVTDKE KKR
Sbjct: 61 STS------YTDGIDLPPSDEEDDGESDEE-ERQKEARRKLKSEQRHLEISVTDKEQKKR 113
Query: 117 EKKDMXXXXXXXXXXXXXXRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAAR 176
E K+ +DDHDAFTVVIGS+TSVLEG D ADANVKDITI++FSV+AR
Sbjct: 114 EAKERLALQAAESAKREAMKDDHDAFTVVIGSKTSVLEGDDMADANVKDITIESFSVSAR 173
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
GKELLK+ SVRISHGKRYGL+GPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD++
Sbjct: 174 GKELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDEK 233
Query: 237 SAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXX--KLAELYEKLQILGSD 294
SA+ AVVSA+EELVKLREE +LQ S+S KLAELY++LQILGSD
Sbjct: 234 SALNAVVSANEELVKLREEAEALQKSSSGADGENVDGEDDDDTGEKLAELYDRLQILGSD 293
Query: 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
AAEAQASKILAGLGFTK+MQ R T+SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR
Sbjct: 294 AAEAQASKILAGLGFTKDMQVRATQSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 353
Query: 355 AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRK 414
AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQ LHFYRGNFD FESGYEQRRK
Sbjct: 354 AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQNLHFYRGNFDGFESGYEQRRK 413
Query: 415 EMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRXXXXXXXXXXXXXXXX-XVDEDEPLPEAP 473
EMNKKF++Y+KQ+KAAKR+GNR QQEKVKDR VDE+ P PEAP
Sbjct: 414 EMNKKFDVYDKQMKAAKRTGNRGQQEKVKDRAKFTAAKEASKSKSKGKTVDEEGPAPEAP 473
Query: 474 KKWRDYSVEFHFXXXXXXXXXXXXXIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNG 533
+KWRDYSV FHF IEVSFSYPNR DF+LS+VDVGIDMGTRVAIVGPNG
Sbjct: 474 RKWRDYSVVFHFPEPTELTPPLLQLIEVSFSYPNRPDFRLSNVDVGIDMGTRVAIVGPNG 533
Query: 534 AGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL 593
AGKSTLLNLLAGDL PTEGE+RRSQKLRIGRYSQHFVDLLTM ETPV YLLRLHPDQEG
Sbjct: 534 AGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRYSQHFVDLLTMGETPVQYLLRLHPDQEGF 593
Query: 594 SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
SKQEAVRAKLGKFGLPSHNHL+PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ
Sbjct: 594 SKQEAVRAKLGKFGLPSHNHLSPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
Query: 654 SIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
SIDALADALDEFTGGVVLVSHDSRLISRVC +EE+S+IWVVE+GTV+ FPGTFEEYKEDL
Sbjct: 654 SIDALADALDEFTGGVVLVSHDSRLISRVCAEEEKSQIWVVEDGTVNFFPGTFEEYKEDL 713
Query: 714 QREIKAEVDD 723
QREIKAEVD+
Sbjct: 714 QREIKAEVDE 723
|
|
| ZFIN|ZDB-GENE-050517-31 abcf1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1297 (461.6 bits), Expect = 5.0e-138, Sum P(3) = 5.0e-138
Identities = 280/648 (43%), Positives = 404/648 (62%)
Query: 73 PPSDD---EDDYALDEEI--DAKKQLHRQQKDESKQLE--ISVTDKELKKREKKDMXXXX 125
PPSDD E++ + D +I A+ + Q+ E ++ + +++ KE KK++K
Sbjct: 243 PPSDDDEEEEEKSDDNDIMMSAEDAIAAQEAKEKQEDDPFANMSKKEKKKKKKIMEYERQ 302
Query: 126 XXXXXXXXXXRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTS 185
D + SR ++LE N DI ++ FS++A GKEL +
Sbjct: 303 VASVRAQNAIEGDFSVSQAELSSRQAMLE-------NASDIKLERFSISAHGKELFVNAD 355
Query: 186 VRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245
+ I G+RYGLVGPNG GK+TLLK +A R + +P NIDVLL EQEVV DD A+QAV+ A
Sbjct: 356 LLIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADDTPAVQAVLKA 415
Query: 246 HEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILA 305
+KL EE LQ+ +L ++YE+L+ +G+ AAEA+A +ILA
Sbjct: 416 DTRRLKLLEEERQLQSRLE-------KGDDSVSERLDKVYEELRAIGAAAAEAKARRILA 468
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365
GL FT EMQ RPTK FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL
Sbjct: 469 GLSFTPEMQNRPTKKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQS 528
Query: 366 WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEK 425
WKKTL++VSHD+ FL+ VCT+IIHL +QKL++YRGN+ F+ Y Q++KE+ K+++ EK
Sbjct: 529 WKKTLLIVSHDQSFLDDVCTDIIHLDNQKLYYYRGNYLTFKKMYIQKQKELQKQYDKQEK 588
Query: 426 QVKAAKRSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDEDEPLPEAPKKWRDYSVEFHF 485
++K K G +Q + + + +E E K+ ++Y+V+F F
Sbjct: 589 KLKDLKAGGKSTKQAEKQTKEALTRKQQKGKKKSQE--EESHEATELLKRPKEYTVKFTF 646
Query: 486 XXXXXXXXXXXXXIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545
V F Y ++ +VD GIDM +R+ IVGPNG GKSTLL LL G
Sbjct: 647 PNPPPLSPPILGLHSVDFGYEGQKPL-FKNVDFGIDMESRICIVGPNGVGKSTLLLLLTG 705
Query: 546 DLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGK 605
L+PT+GE+R++ +L++G ++Q + D L M+E YL R L Q++ R LG+
Sbjct: 706 KLNPTKGEMRKNHRLKVGFFNQQYADQLNMDEAATEYLQR----NFNLQYQDS-RKCLGR 760
Query: 606 FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665
FGL SH H I+KLSGGQKARVVF+ +S +P +L+LDEPTN+LD++SIDAL++A++E+
Sbjct: 761 FGLESHAHTIQISKLSGGQKARVVFSELSCRQPDVLILDEPTNNLDIESIDALSEAINEY 820
Query: 666 TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
G V++VSHD+RLI+ E + ++WVVE+ ++++ G FE+YK ++
Sbjct: 821 KGAVIIVSHDARLIT-----ETQCQLWVVEDQSINQIDGDFEDYKREV 863
|
|
| UNIPROTKB|E1BGH0 ABCF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1287 (458.1 bits), Expect = 8.1e-136, Sum P(3) = 8.1e-136
Identities = 279/643 (43%), Positives = 396/643 (61%)
Query: 73 PPSDDEDDYALDEEIDAKKQLHRQQKDESKQLE--ISVTDKELKKREKKDMXXXXXXXXX 130
PP ++ A E +++ +++ ESK + ++ KE KK +K+
Sbjct: 217 PPKQGKEK-AKKAEQGSEEGEEEEEEGESKADDPYAHLSKKEKKKLKKQMEYERQVASLK 275
Query: 131 XXXXXRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISH 190
+D + SR ++LE N DI ++ FS++A GKEL + + I
Sbjct: 276 AANAAENDFSVSQAEVSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVA 328
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELV 250
G+RYGLVGPNG GK+TLLK +A R + +P NIDVLL EQEVV D+ A+QAV+ A + +
Sbjct: 329 GRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRL 388
Query: 251 KLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFT 310
KL EE LQ +L ++YE+L+ G+ AAEA+A +ILAGLGF
Sbjct: 389 KLLEEERRLQGQLE-------QGDDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFD 441
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTL 370
EMQ RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL
Sbjct: 442 PEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTL 501
Query: 371 VVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAA 430
++VSHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K
Sbjct: 502 LIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKEL 561
Query: 431 KRSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDEDEPLPEAPKKWRDYSVEFHFXXXXX 490
K G +Q + + + +E + PE K+ ++Y+V F F
Sbjct: 562 KAGGKSTKQAEKQTKEALTRKQQKCRRKNQD--EESQEAPELLKRPKEYTVRFTFPDPPP 619
Query: 491 XXXXXXXXIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT 550
V+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+PT
Sbjct: 620 LSPPVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPT 678
Query: 551 EGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS 610
GE+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL S
Sbjct: 679 RGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLES 733
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVV 670
H H I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++E+ G V+
Sbjct: 734 HAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVI 793
Query: 671 LVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
+VSHD+RLI+ E ++WVVE +VS+ G FE+YK ++
Sbjct: 794 VVSHDARLIT-----ETNCQLWVVEEQSVSQIDGDFEDYKREV 831
|
|
| UNIPROTKB|Q8NE71 ABCF1 "ATP-binding cassette sub-family F member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1280 (455.6 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 274/630 (43%), Positives = 390/630 (61%)
Query: 84 DEEIDAKKQLHRQQKDESKQLEISVTDKELKKREKKDMXXXXXXXXXXXXXXRDDHDAFT 143
+EE + +++ + ++ ++ KE KK +K+ +D
Sbjct: 229 EEEGEGEEEEEEGGESKADDPYAHLSKKEKKKLKKQMEYERQVASLKAANAAENDFSVSQ 288
Query: 144 VVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMG 203
+ SR ++LE N DI ++ FS++A GKEL + + I G+RYGLVGPNG G
Sbjct: 289 AEMSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKG 341
Query: 204 KSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNST 263
K+TLLK +A R + +P NIDVLL EQEVV D+ A+QAV+ A + +KL EE LQ
Sbjct: 342 KTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEEERRLQGQL 401
Query: 264 SVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323
+L ++YE+L+ G+ AAEA+A +ILAGLGF EMQ RPT+ FSG
Sbjct: 402 E-------QGDDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSG 454
Query: 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTV 383
GWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL++VSHD+ FL+ V
Sbjct: 455 GWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDV 514
Query: 384 CTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVK 443
CT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K K G +Q + +
Sbjct: 515 CTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQ 574
Query: 444 DRXXXXXXXXXXXXXXXXXVDEDEPLPEAPKKWRDYSVEFHFXXXXXXXXXXXXXIEVSF 503
+ +E + PE K+ ++Y+V F F V+F
Sbjct: 575 TKEALTRKQQKCRRKNQD--EESQEAPELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTF 632
Query: 504 SYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIG 563
Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+PT GE+R++ +L+IG
Sbjct: 633 GYQGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRLKIG 691
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGG 623
++Q + + L MEETP YL R L Q+A R LG+FGL SH H I KLSGG
Sbjct: 692 FFNQQYAEQLRMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLESHAHTIQICKLSGG 746
Query: 624 QKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVC 683
QKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++E+ G V++VSHD+RLI+
Sbjct: 747 QKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLIT--- 803
Query: 684 DDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
E ++WVVE +VS+ G FE+YK ++
Sbjct: 804 --ETNCQLWVVEEQSVSQIDGDFEDYKREV 831
|
|
| UNIPROTKB|Q7YR37 ABCF1 "ATP-binding cassette sub-family F member 1" [Pan troglodytes (taxid:9598)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 3.1e-134, Sum P(3) = 3.1e-134
Identities = 273/620 (44%), Positives = 383/620 (61%)
Query: 96 QQKDES--KQLEISVTDKELKKREKKDMXXXXXXXXXXXXXXRDDHDAFTVVIGSRTSVL 153
+ K+E K+ E KE K+ ++ +D + SR ++L
Sbjct: 201 EDKEEEIIKEKEPPKQGKEKAKKAEQMEYERQVASLKAANAAENDFSVSQAEMSSRQAML 260
Query: 154 EGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213
E N DI ++ FS++A GKEL + + I +RYGLVGPNG GK+TLLK +A
Sbjct: 261 E-------NASDIKLEKFSISAHGKELFVNADLYIVASRRYGLVGPNGKGKTTLLKHIAN 313
Query: 214 RKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXX 273
R + +P NIDVLL EQEVV D+ A+QAV+ A + +KL EE LQ
Sbjct: 314 RALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEEERRLQGQLE-------QG 366
Query: 274 XXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLAR 333
+L ++YE+L+ G+ AAEA+A +ILAGLGF EMQ RPT+ FSGGWRMR+SLAR
Sbjct: 367 DDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLAR 426
Query: 334 ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQ 393
ALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL++VSHD+ FL+ VCT+IIHL Q
Sbjct: 427 ALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQ 486
Query: 394 KLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRXXXXXXXX 453
+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K K G +Q + + +
Sbjct: 487 RLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQ 546
Query: 454 XXXXXXXXXVDEDEPLPEAPKKWRDYSVEFHFXXXXXXXXXXXXXIEVSFSYPNREDFKL 513
+E + PE K+ ++Y+V F F V+F Y ++
Sbjct: 547 KCRRKNQD--EESQEAPELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPL-F 603
Query: 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLL 573
++D GIDM +R+ IVGPNG GKSTLL LL G L+PT GE+R++ +L+IG ++Q + + L
Sbjct: 604 KNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRLKIGFFNQQYAEQL 663
Query: 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633
MEETP YL R L Q+A R LG+FGL SH H I KLSGGQKARVVF +
Sbjct: 664 RMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLESHAHTIQICKLSGGQKARVVFAEL 718
Query: 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWV 693
+ +P +L+LDEPTN+LD++SIDAL +A++E+ G V++VSHD+RLI+ E ++WV
Sbjct: 719 ACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLIT-----ETNCQLWV 773
Query: 694 VENGTVSRFPGTFEEYKEDL 713
VE +VS+ G FE+YK ++
Sbjct: 774 VEEQSVSQIDGDFEDYKREV 793
|
|
| UNIPROTKB|K7GL02 ABCF1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1284 (457.0 bits), Expect = 1.8e-133, Sum P(2) = 1.8e-133
Identities = 277/643 (43%), Positives = 395/643 (61%)
Query: 73 PPSDDEDDYALDEEIDAKKQLHRQQKDESKQLE--ISVTDKELKKREKKDMXXXXXXXXX 130
PP ++ E+ ++ +++ ESK + ++ KE KK +K+
Sbjct: 213 PPKQGKEKAKKAEQGSEEEGEEEEEEGESKADDPYAHLSKKEKKKLKKQMEYERQVASLK 272
Query: 131 XXXXXRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISH 190
+D + SR ++LE N DI ++ FS++A GKEL + + I
Sbjct: 273 AANAAENDFSVSQAEMSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVA 325
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELV 250
G+RYGLVGPNG GK+TLLK +A R + +P NIDVLL EQEVV D+ A+QAV+ A + +
Sbjct: 326 GRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRL 385
Query: 251 KLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFT 310
KL EE LQ +L ++YE+L+ G+ AAEA+A +ILAGLGF
Sbjct: 386 KLLEEERRLQGQLE-------QGDDTAADRLEKVYEELRATGAAAAEAKARRILAGLGFD 438
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTL 370
EMQ RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL
Sbjct: 439 PEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTL 498
Query: 371 VVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAA 430
++VSHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K
Sbjct: 499 LIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKEL 558
Query: 431 KRSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDEDEPLPEAPKKWRDYSVEFHFXXXXX 490
K G +Q + + + +E + PE K+ ++Y+V F F
Sbjct: 559 KAGGKSTKQAEKQTKEALTRKQQKCRRKNQD--EESQEAPELLKRPKEYTVRFTFPDPPP 616
Query: 491 XXXXXXXXIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT 550
V+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+PT
Sbjct: 617 LSPPVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPT 675
Query: 551 EGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS 610
GE+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL S
Sbjct: 676 RGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLES 730
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVV 670
H H I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++E+ G V+
Sbjct: 731 HAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVI 790
Query: 671 LVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
+VSHD+RLI+ E ++WVVE +VS+ G F++YK ++
Sbjct: 791 VVSHDARLIT-----ETNCQLWVVEEQSVSQIDGDFDDYKREV 828
|
|
| MGI|MGI:1351658 Abcf1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1280 (455.6 bits), Expect = 3.7e-133, Sum P(2) = 3.7e-133
Identities = 277/642 (43%), Positives = 393/642 (61%)
Query: 73 PPSDDEDDYALDEEIDAKKQLHRQQKD-ESKQLEISVTDKELKKREKKDMXXXXXXXXXX 131
PP +D + E + ++ ++ D ++ +++ KE KK +K+
Sbjct: 209 PPQQGKDRDKKEAEQGSGEEKEEKEGDLKANDPYANLSKKEKKKLKKQMDYERQVESLKA 268
Query: 132 XXXXRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHG 191
+D + SR ++LE N DI ++ FS++A GKEL + + I G
Sbjct: 269 ANAAENDFSVSQAEVSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVAG 321
Query: 192 KRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVK 251
+RYGLVGPNG GK+TLLK +A R + +P NIDVLL EQEVV D+ A+QAV+ A + ++
Sbjct: 322 RRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLR 381
Query: 252 LREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFTK 311
L EE LQ KL ++YE+L+ G+ AAEA+A +ILAGLGF
Sbjct: 382 LLEEERRLQGQLE-------QGDDTAAEKLEKVYEELRATGAAAAEAKARRILAGLGFDP 434
Query: 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLV 371
EMQ RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL+
Sbjct: 435 EMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLL 494
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAK 431
+VSHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K K
Sbjct: 495 IVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELK 554
Query: 432 RSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDEDEPLPEAPKKWRDYSVEFHFXXXXXX 491
G +Q + K + EP PE K+ ++Y+V F F
Sbjct: 555 AGGKSTKQAE-KQTKEVLTRKQQKCRRKNQDEESQEP-PELLKRPKEYTVRFTFPDPPPL 612
Query: 492 XXXXXXXIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
V+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+PT
Sbjct: 613 SPPVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTN 671
Query: 552 GEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH 611
GE+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL SH
Sbjct: 672 GEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSF----NLPYQDA-RKCLGRFGLESH 726
Query: 612 NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVL 671
H I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++++ G V++
Sbjct: 727 AHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINDYKGAVIV 786
Query: 672 VSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
VSHD+RLI+ E ++WVVE VS+ G F++YK ++
Sbjct: 787 VSHDARLIT-----ETNCQLWVVEEQGVSQIDGDFDDYKREV 823
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| UNIPROTKB|Q767L0 ABCF1 "ATP-binding cassette sub-family F member 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1279 (455.3 bits), Expect = 6.0e-133, Sum P(2) = 6.0e-133
Identities = 273/618 (44%), Positives = 384/618 (62%)
Query: 96 QQKDESKQLEISVTDKELKKREKKDMXXXXXXXXXXXXXXRDDHDAFTVVIGSRTSVLEG 155
Q ++E K+ E KE K+ ++ +D + SR ++LE
Sbjct: 203 QDEEEIKEKEPPKQGKEKAKKAEQMEYERQVASLKAANAAENDFSVSQAEMSSRQAMLE- 261
Query: 156 QDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215
N DI ++ FS++A GKEL + + I G+RYGLVGPNG GK+TLLK +A R
Sbjct: 262 ------NASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRA 315
Query: 216 IPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXX 275
+ +P NIDVLL EQEVV D+ A+QAV+ A + +KL EE LQ
Sbjct: 316 LSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEEERRLQGQLE-------QGDD 368
Query: 276 XXXXKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL 335
+L ++YE+L+ G+ AAEA+A +ILAGLGF EMQ RPT+ FSGGWRMR+SLARAL
Sbjct: 369 TAADRLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARAL 428
Query: 336 FVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
F++PTLL+LDEPTNHLDL AV+WL YL W+KTL++VSHD+ FL+ VCT+IIHL Q+L
Sbjct: 429 FMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRL 488
Query: 396 HFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRXXXXXXXXXX 455
H+YRGN+ F+ Y+Q++KE+ K++E EK++K K G +Q + + +
Sbjct: 489 HYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKC 548
Query: 456 XXXXXXXVDEDEPLPEAPKKWRDYSVEFHFXXXXXXXXXXXXXIEVSFSYPNREDFKLSD 515
+E + PE K+ ++Y+V F F V+F Y ++ +
Sbjct: 549 RRKNQD--EESQEAPELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPL-FKN 605
Query: 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575
+D GIDM +R+ IVGPNG GKSTLL LL G L+PT GE+R++ +L+IG ++Q + + L M
Sbjct: 606 LDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRM 665
Query: 576 EETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635
EETP YL R L Q+A R LG+FGL SH H I KLSGGQKARVVF ++
Sbjct: 666 EETPTEYLQRGF----NLPYQDA-RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 720
Query: 636 SKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVE 695
+P +L+LDEPTN+LD++SIDAL +A++E+ G V++VSHD+RLI+ E ++WVVE
Sbjct: 721 REPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLIT-----ETNCQLWVVE 775
Query: 696 NGTVSRFPGTFEEYKEDL 713
+VS+ G F++YK ++
Sbjct: 776 EQSVSQIDGDFDDYKREV 793
|
|
| UNIPROTKB|F6Y789 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1283 (456.7 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
Identities = 278/644 (43%), Positives = 395/644 (61%)
Query: 73 PPSDDEDDYALDEEIDAKKQLHRQQKDESKQLE--ISVTDKELKKREKKDMXXXXXXXXX 130
PP ++ E+ ++ +++ ESK + ++ KE KK +K+
Sbjct: 212 PPRQGKEKAKKAEQCSEEEGEDEEEEGESKADDPYAHLSKKEKKKLKKQMEYERQVASLK 271
Query: 131 XXXXXRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISH 190
+D + SR ++LE N DI ++ FS++A GKEL + + I
Sbjct: 272 AANAAENDFSVSQAEVSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVA 324
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELV 250
G+RYGLVGPNG GK+TLLK ++ R + +P NIDVLL EQEVV D+ A+QAV+ A + +
Sbjct: 325 GRRYGLVGPNGKGKTTLLKHISNRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRL 384
Query: 251 KLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFT 310
KL EE LQ +L ++YE+L+ G+ AAEA+A +ILAGLGF
Sbjct: 385 KLLEEERRLQRQLE-------QGDDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFD 437
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTL 370
EMQ RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL
Sbjct: 438 PEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTL 497
Query: 371 VVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAA 430
++VSHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K
Sbjct: 498 LIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKEL 557
Query: 431 KRSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDED-EPLPEAPKKWRDYSVEFHFXXXX 489
K G +Q + + + DED + PE K+ ++Y+V F F
Sbjct: 558 KAGGKSTKQAEKQTKEALTRKQQKCRRKNQ---DEDSQEAPELLKRPKEYTVRFTFPNPP 614
Query: 490 XXXXXXXXXIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549
+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+P
Sbjct: 615 PLSPPVLGLHGATFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTP 673
Query: 550 TEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP 609
T GE+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL
Sbjct: 674 TRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLE 728
Query: 610 SHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGV 669
SH H I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++E+ G V
Sbjct: 729 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAV 788
Query: 670 VLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
++VSHD+RLI+ E ++WVVE +VS+ G FE+YK ++
Sbjct: 789 IVVSHDARLIT-----ETNCQLWVVEEQSVSQIDGDFEDYKREV 827
|
|
| UNIPROTKB|J9NXH0 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1283 (456.7 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
Identities = 278/644 (43%), Positives = 395/644 (61%)
Query: 73 PPSDDEDDYALDEEIDAKKQLHRQQKDESKQLE--ISVTDKELKKREKKDMXXXXXXXXX 130
PP ++ E+ ++ +++ ESK + ++ KE KK +K+
Sbjct: 158 PPRQGKEKAKKAEQCSEEEGEDEEEEGESKADDPYAHLSKKEKKKLKKQMEYERQVASLK 217
Query: 131 XXXXXRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISH 190
+D + SR ++LE N DI ++ FS++A GKEL + + I
Sbjct: 218 AANAAENDFSVSQAEVSSRQAMLE-------NASDIKLEKFSISAHGKELFVNADLYIVA 270
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELV 250
G+RYGLVGPNG GK+TLLK ++ R + +P NIDVLL EQEVV D+ A+QAV+ A + +
Sbjct: 271 GRRYGLVGPNGKGKTTLLKHISNRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRL 330
Query: 251 KLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFT 310
KL EE LQ +L ++YE+L+ G+ AAEA+A +ILAGLGF
Sbjct: 331 KLLEEERRLQRQLE-------QGDDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFD 383
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTL 370
EMQ RPT+ FSGGWRMR+SLARALF++PTLL+LDEPTNHLDL AV+WL YL W+KTL
Sbjct: 384 PEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTL 443
Query: 371 VVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAA 430
++VSHD+ FL+ VCT+IIHL Q+LH+YRGN+ F+ Y+Q++KE+ K++E EK++K
Sbjct: 444 LIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKEL 503
Query: 431 KRSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDED-EPLPEAPKKWRDYSVEFHFXXXX 489
K G +Q + + + DED + PE K+ ++Y+V F F
Sbjct: 504 KAGGKSTKQAEKQTKEALTRKQQKCRRKNQ---DEDSQEAPELLKRPKEYTVRFTFPNPP 560
Query: 490 XXXXXXXXXIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549
+F Y ++ ++D GIDM +R+ IVGPNG GKSTLL LL G L+P
Sbjct: 561 PLSPPVLGLHGATFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTP 619
Query: 550 TEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP 609
T GE+R++ +L+IG ++Q + + L MEETP YL R L Q+A R LG+FGL
Sbjct: 620 TRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF----NLPYQDA-RKCLGRFGLE 674
Query: 610 SHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGV 669
SH H I KLSGGQKARVVF ++ +P +L+LDEPTN+LD++SIDAL +A++E+ G V
Sbjct: 675 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAV 734
Query: 670 VLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
++VSHD+RLI+ E ++WVVE +VS+ G FE+YK ++
Sbjct: 735 IVVSHDARLIT-----ETNCQLWVVEEQSVSQIDGDFEDYKREV 773
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9M1H3 | AB4F_ARATH | No assigned EC number | 0.8235 | 0.9889 | 0.9889 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| grail3.0090001801 | ABC transporter family protein (728 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 723 | |||
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-176 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-168 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-106 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 8e-90 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 9e-59 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-58 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-51 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 9e-51 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-37 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-35 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-32 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-30 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-30 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-29 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-29 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-28 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-28 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-28 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-28 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-26 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-26 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-25 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-25 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-25 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-25 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-23 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-23 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-23 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-23 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-23 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-23 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-23 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-23 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-23 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-22 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-22 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-22 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-22 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-22 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-21 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-21 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-21 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-21 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-21 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-21 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-21 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-20 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-20 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-20 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-20 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-20 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-20 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-20 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-20 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-19 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-19 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-19 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-19 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-19 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-18 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-18 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-18 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-18 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-18 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-18 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-18 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-18 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-18 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-18 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-17 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-17 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-17 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-17 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-17 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-17 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-17 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-17 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-17 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-17 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-17 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-17 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-16 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-16 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-16 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-16 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-16 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-16 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-16 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-16 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-15 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-15 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-15 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-15 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-15 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-15 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-15 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-15 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-15 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 6e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-15 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-15 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-15 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-14 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-14 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-14 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-14 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-14 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-13 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-13 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-13 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-13 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-13 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-13 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-13 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-13 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-13 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-13 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-13 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-13 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-13 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-13 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 6e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-13 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-13 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-12 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-12 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-12 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-12 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-12 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-12 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 7e-12 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-12 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 8e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-12 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-11 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-11 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-11 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-11 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-11 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-11 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-11 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-11 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-11 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-11 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-11 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-11 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-11 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-11 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-11 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-11 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-11 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-11 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-11 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-10 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-10 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-10 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-10 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-10 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-10 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-10 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 6e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 7e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 8e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-09 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-09 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-09 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-09 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-09 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-09 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-09 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-09 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-09 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-09 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-09 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-08 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-08 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-08 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-08 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-08 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-08 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-08 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-08 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-08 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-08 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-08 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-08 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 6e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 9e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-07 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-07 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-07 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-07 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-07 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-07 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-07 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-07 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-07 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 7e-07 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-07 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-07 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-07 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 9e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-06 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-06 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-06 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-06 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-06 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-06 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-06 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-06 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-06 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-06 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-06 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-06 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-06 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 5e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-06 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 6e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 6e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-06 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 6e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-06 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 7e-06 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-06 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 8e-06 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 9e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 9e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 9e-06 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-05 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-05 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-05 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-05 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-05 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-05 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-05 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 3e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-05 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 5e-05 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 6e-05 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 6e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-05 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 6e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-05 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 7e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 9e-05 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-04 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-04 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-04 | |
| pfam13558 | 79 | pfam13558, SbcCD_C, Putative exonuclease SbcCD, C | 2e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-04 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 2e-04 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-04 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-04 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-04 | |
| cd03279 | 213 | cd03279, ABC_sbcCD, ATP-binding cassette domain of | 3e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-04 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 4e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-04 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 4e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-04 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-04 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-04 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 9e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.001 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 0.001 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.001 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 0.001 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 0.001 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.001 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.001 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 0.001 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 0.001 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 0.002 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.002 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.002 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.002 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.002 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.002 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 0.003 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 0.003 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.003 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.004 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.004 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 520 bits (1342), Expect = e-176
Identities = 270/645 (41%), Positives = 392/645 (60%), Gaps = 44/645 (6%)
Query: 83 LDEEIDAKKQLHRQQKDESKQLEISVTDKELKKREKKDMLAAHHAEQAKKEALRDDHDAF 142
+D+ AKK+ + +++ ++ K++E++ + A A+ EA +
Sbjct: 104 MDDSEVAKKKPEPDDGPLLSERDLAKIERR-KRKEERQREVQYQAHVAEMEAAKAGMPG- 161
Query: 143 TVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGM 202
V + +KDI ++NFS++ G++L+ SV ++ G+ YGLVG NG
Sbjct: 162 -------VYVNHDGNGGGPAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGT 214
Query: 203 GKSTLLKLLAWRKIP-VPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASL-- 259
GK+T L+ +A I +PKN +L VEQEVVGDD +A+Q V++ E +L EE A L
Sbjct: 215 GKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVA 274
Query: 260 -QNSTSVDG--------EEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT 310
Q + +DG D + ++L E+Y++L+++ + AEA+A+ ILAGL FT
Sbjct: 275 QQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTL 370
EMQ + TK+FSGGWRMRI+LARALF++P LLLLDEPTNHLDL AVLWLE YL +W KT
Sbjct: 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTF 394
Query: 371 VVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAA 430
+VVSH R+FLNTV T+I+HLH QKL Y+G++D FE E++ K K FE E+
Sbjct: 395 IVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERS---- 450
Query: 431 KRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTE 490
RS + +K + AK A+ + S+ KA ++ + + P DY +F FP P +
Sbjct: 451 -RSHMQAFIDKFRYNAKRASLVQ-SRIKALDRLGHVDAVVNDP----DY--KFEFPTPDD 502
Query: 491 L-TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549
PP++ + SF YP +++ GID+ +R+A+VGPNG GKST+L L++G+L P
Sbjct: 503 RPGPPIISFSDASFGYPGGP-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP 561
Query: 550 TEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP 609
+ G V RS K+R+ +SQH VD L + P+ Y++R P G+ +Q+ +RA LG FG+
Sbjct: 562 SSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQK-LRAHLGSFGVT 617
Query: 610 SHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGV 669
+ L P+ LSGGQK+RV F I+ KPHILLLDEP+NHLD+ +++AL L F GGV
Sbjct: 618 GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGV 677
Query: 670 VLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQ 714
++VSHD LIS D E+WVV G V+ F GTF +YK+ LQ
Sbjct: 678 LMVSHDEHLISGSVD-----ELWVVSEGKVTPFHGTFHDYKKTLQ 717
|
Length = 718 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 494 bits (1273), Expect = e-168
Identities = 217/560 (38%), Positives = 312/560 (55%), Gaps = 40/560 (7%)
Query: 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR------KIPV 218
IT++N S+A + LL++ S+ ++ G+R GLVG NG GKSTLLK+LA ++
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 219 PKNIDVLLVEQEVVGDD-RSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDA 277
PK + V + QE D ++ + V+ EL +L E+ A+
Sbjct: 63 PKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA----------LLADPD 112
Query: 278 GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337
E LAEL L+ L EA+A + L GLGF E RP S SGGWR R++LARAL
Sbjct: 113 DELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLE 170
Query: 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397
+P LLLLDEPTNHLDL ++ WLE+YL R+ T++VVSHDR FL+ V T I+ L KL
Sbjct: 171 EPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTP 230
Query: 398 YRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKN 457
Y+GN+ + EQ+ + + ++ YEKQ K + +QE ++ +A+ + +K+
Sbjct: 231 YKGNYSSYL---EQKAERLRQEAAAYEKQQKELAK-----EQEWIRRGKAAASKAKKAKS 282
Query: 458 KAKGKVDEDEPLPEAPKKWRDYSVEFHFPEP-TELTPPLLQLIEVSFSYPNREDFKLSDV 516
+ K + L E + F FP P L +L+ VS Y L D+
Sbjct: 283 RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLL-LKDL 341
Query: 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTME 576
ID G R+AIVGPNGAGKSTLL LLAG+L P G V+ + ++IG + QH +L +
Sbjct: 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDP-D 400
Query: 577 ETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636
+T + L PD + ++ VRA LG+FG + P+ LSGG+KAR++ + +
Sbjct: 401 KTVLEELSEGFPDGD----EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456
Query: 637 KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVEN 696
P++LLLDEPTNHLD++S++AL +AL +F G V+LVSHD + RV IW+VE
Sbjct: 457 PPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVAT-----RIWLVE- 510
Query: 697 GTVSRFPGTFEEYKEDLQRE 716
V F G +E+Y E +
Sbjct: 511 DKVEEFEGGYEDYLEQKKER 530
|
Length = 530 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 337 bits (867), Expect = e-106
Identities = 202/561 (36%), Positives = 311/561 (55%), Gaps = 61/561 (10%)
Query: 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR------KIPVPKNIDVLLVEQEVVG 233
LL + + I+ G++ GLVG NG GKSTLL LL P N + V QE
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75
Query: 234 DDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS 293
+ A++ V+ E +L ++ D ++ ND G +A ++ KL + +
Sbjct: 76 LPQPALEYVIDGDREYRQLEAQLH------------DANERND-GHAIATIHGKLDAIDA 122
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
++A+ +L GLGF+ E RP FSGGWRMR++LA+AL + LLLLDEPTNHLDL
Sbjct: 123 WTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL 182
Query: 354 RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRR 413
AV+WLE++L ++ TL+++SHDRDFL+ + +IIH+ Q L Y GN+ FE QR
Sbjct: 183 DAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE---VQRA 239
Query: 414 KEMNKKFEIYEKQVKAAKRSGNRVQQEKV--------KDRAKSAAAKEASKNKAKGKVDE 465
+ ++ +YE QQE+V + RAK+ AK+A +++ K+ E
Sbjct: 240 TRLAQQQAMYES------------QQERVAHLQSYIDRFRAKATKAKQA---QSRIKMLE 284
Query: 466 DEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTR 525
L AP D F F P L PLL++ +VS Y +R L + + + G+R
Sbjct: 285 RMELI-APAH-VDNPFHFSFRAPESLPNPLLKMEKVSAGYGDR--IILDSIKLNLVPGSR 340
Query: 526 VAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLR 585
+ ++G NGAGKSTL+ LLAG+L+P GE+ ++ +++G ++QH ++ L +E+P+ +L R
Sbjct: 341 IGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLAR 400
Query: 586 LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645
L P + ++ +R LG FG + SGG+KAR+V I +P++LLLDE
Sbjct: 401 LAPQE----LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456
Query: 646 PTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705
PTNHLD+ AL +AL +F G +V+VSHD L+ DD +++V +G V F G
Sbjct: 457 PTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDD-----LYLVHDGKVEPFDGD 511
Query: 706 FEEYKE---DLQREIKAEVDD 723
E+Y++ D+Q++ +
Sbjct: 512 LEDYQQWLSDVQKQENQTDEA 532
|
Length = 638 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 290 bits (745), Expect = 8e-90
Identities = 184/557 (33%), Positives = 294/557 (52%), Gaps = 72/557 (12%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVG---- 233
K L ++ SV+ G RYGL+G NG GKST +K+L P N V L E +G
Sbjct: 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN--VSLDPNERLGKLRQ 71
Query: 234 -----DDRSAIQAVVSAHEELVKLREE---VASLQNSTSVDGEEDGDDANDAGEKLAELY 285
++ + + V+ H EL ++++E + +L + EEDG K+A+L
Sbjct: 72 DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMS----EEDG-------MKVADLE 120
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
K + AEA+A ++L G+G +E + GW++R+ LA+ALF P +LLLD
Sbjct: 121 VKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLD 180
Query: 346 EPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDF 405
EPTN+LD+ + WLE+ L T++++SHDR FLN+VCT + L +L Y GN+D++
Sbjct: 181 EPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240
Query: 406 ESGYEQRRKEM-----NKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAK 460
+ Q R+ + KK +I E Q ++ S N +AK A ++ +K K
Sbjct: 241 MTAATQARERLLADNAKKKAQIAELQSFVSRFSAN-------ASKAKQATSR--AKQIDK 291
Query: 461 GKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGI 520
K++E +P R F + +L L++ ++ + N FK ++++ +
Sbjct: 292 IKLEEVKPSSRQNPFIR-------FEQDKKLHRNALEVENLTKGFDNGPLFK--NLNLLL 342
Query: 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQ-H---FVDLLTME 576
+ G R+AI+G NG GK+TLL L G+L P G V+ S+ IG Y+Q H F + LT+
Sbjct: 343 EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLF 402
Query: 577 ETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636
+ + +Q AVR LG+ + + LSGG+K R++F + M
Sbjct: 403 DWMSQWRQEGDDEQ-------AVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ 455
Query: 637 KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHD----SRLISRVCDDEERSEIW 692
KP++L++DEPTNH+DM+SI++L AL+++ G ++ VSHD S L +R+ I
Sbjct: 456 KPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRI--------IE 507
Query: 693 VVENGTVSRFPGTFEEY 709
+ +G V F GT+EEY
Sbjct: 508 ITPDGVVD-FSGTYEEY 523
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 9e-59
Identities = 169/593 (28%), Positives = 276/593 (46%), Gaps = 107/593 (18%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I+I ++ LL + + I +R LVG NG GKSTL+K+L +VL
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG---------EVL 54
Query: 226 L------VEQEVV-----GDDRSAIQAVVSAH-----EELVKLREEVASLQNSTSVDGEE 269
L EQ+++ D ++ V EE + + + S E
Sbjct: 55 LDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDI----SHLVET 110
Query: 270 DGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRI 329
D + N +LA+L E+L E + +++LA LG + S SGGW +
Sbjct: 111 DPSEKNL--NELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDA---ALSSLSGGWLRKA 165
Query: 330 SLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIH 389
+L RAL P +LLLDEPTNHLD+ + WLE +L ++ +++ +SHDR F+ + T I+
Sbjct: 166 ALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVD 225
Query: 390 LHDQKLHFYRGNFDDFESGYEQ--RRKEM-NKKF-------EIYEKQVKAAKRSGN--RV 437
L KL Y GN+D + E+ R +E+ N +F E++ +Q A+R+ N RV
Sbjct: 226 LDRGKLVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRV 285
Query: 438 QQEKVKDRAKSAAAKEASK-----NKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELT 492
RA A +E S+ AK +V+E R + F
Sbjct: 286 -------RALKALRRERSERREVMGTAKMQVEEAS---------RSGKIVF--------- 320
Query: 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
++ V++ ++ + D + G ++A++GPNG GK+TLL L+ G L G
Sbjct: 321 ----EMENVNYQIDGKQ--LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG 374
Query: 553 EVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA--------VRAKLG 604
+ KL + + QH + L E+T + D KQE V L
Sbjct: 375 RIHCGTKLEVAYFDQHRAE-LDPEKTVM--------DNLAEGKQEVMVNGRPRHVLGYLQ 425
Query: 605 KFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664
F +TP+ LSGG++ R++ + + ++L+LDEPTN LD+++++ L + LD
Sbjct: 426 DFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS 485
Query: 665 FTGGVVLVSHDSRLISRVCDDEERSEIWVVE-NGTVSRFPGTFEEYKEDLQRE 716
+ G V+LVSHD + + D +E W+ E NG + R+ G + + ++ Q+
Sbjct: 486 YQGTVLLVSHDRQFV-----DNTVTECWIFEGNGKIGRYVGGYHDARQ--QQA 531
|
Length = 635 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 4e-58
Identities = 165/563 (29%), Positives = 269/563 (47%), Gaps = 54/563 (9%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAW-------RKIPVPKNIDVLLVEQ 229
KE+LK S+ G + G++G NG GKSTLL+++A P P I V + Q
Sbjct: 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQ 75
Query: 230 EVVGDD----RSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
E D R ++ V+ ++ + E+++ E D D + + AEL
Sbjct: 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKF------AEPD-ADMDALLAEQAELQ 128
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
E + + + + + L SGG R R++L R L +P +LLLD
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDA--DVTKLSGGERRRVALCRLLLSKPDMLLLD 186
Query: 346 EPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDF 405
EPTNHLD +V WLE++L + T+V V+HDR FL+ V I+ L + + GN+
Sbjct: 187 EPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY--- 243
Query: 406 ESGY-EQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVD 464
S + EQ+ K + E EK+ A +++ R + E V+ K A + K+K ++
Sbjct: 244 -SSWLEQKEKRL----EQEEKEESARQKALKR-ELEWVRSSPK------ARQAKSKARLA 291
Query: 465 EDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGT 524
E L + R+ + E + P L +++ +S + ++ D+ + G
Sbjct: 292 RYEELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLID--DLSFKLPPGG 349
Query: 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEET---PVS 581
V ++GPNGAGKSTL ++ G P G ++ + +++ Q D L +T +S
Sbjct: 350 IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEIS 408
Query: 582 YLLRLHPDQEGLSKQE-AVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640
L D L K+E RA +G+F + + +LSGG++ RV S ++
Sbjct: 409 GGL----DIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV 464
Query: 641 LLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVE-NGTV 699
LLLDEPTN LD++++ AL +AL EF G V++SHD + R+ + I E + V
Sbjct: 465 LLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIA-----THILAFEGDSHV 519
Query: 700 SRFPGTFEEYKEDLQREIKAEVD 722
F G + EY+ED +R + + D
Sbjct: 520 EWFEGNYSEYEEDKKRRLGEDAD 542
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 3e-51
Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 59/203 (29%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
++L +S +Y + K D+ + I+ G R+ +VG NGAGKSTLL L+AG+L P EG V
Sbjct: 1 IELENLSKTYGGKLLLK--DISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLT 615
++IG + Q
Sbjct: 59 WGSTVKIGYFEQ------------------------------------------------ 70
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHD 675
LSGG+K R+ + + P++LLLDEPTNHLD++SI+AL +AL E+ G V+LVSHD
Sbjct: 71 ----LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHD 126
Query: 676 SRLISRVCDDEERSEIWVVENGT 698
+ +V I +E+G
Sbjct: 127 RYFLDQVATK-----IIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 9e-51
Identities = 174/587 (29%), Positives = 274/587 (46%), Gaps = 102/587 (17%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA----------WRKIPVPKNIDVLL 226
K++LK S+ G + G++G NG GKSTLL+++A P P I V
Sbjct: 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR---PAP-GIKVGY 74
Query: 227 VEQEVVGDD----RSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA 282
+ QE D R ++ V+ + + E+ + E D D + +
Sbjct: 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAY------AEPD-ADFDALAAEQG 127
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGR------PTKSFSGGWRMRISLARALF 336
EL E + + ++Q + L R SGG R R++L R L
Sbjct: 128 ELQEIIDAADAWDLDSQLEIAMDAL--------RCPPWDAKVTKLSGGERRRVALCRLLL 179
Query: 337 VQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396
+P +LLLDEPTNHLD +V WLE++L + T+V V+HDR FL+ V I+ L +
Sbjct: 180 EKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 239
Query: 397 FYRGNFDDFESGY-EQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEAS 455
+ GN+ S + EQ+ K + EKQ A +++ R + E V+ +S A++A
Sbjct: 240 PWEGNY----SSWLEQKAKRL----AQEEKQEAARQKALKR-ELEWVR---QSPKARQA- 286
Query: 456 KNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLL--QLIE---VSFSYPNR-- 508
K+KA+ E E L E +K R+ + E P P L ++IE +S S+ +R
Sbjct: 287 KSKARLARYE-ELLSEEYQK-RNETNEIFIP-----PGPRLGDKVIEAENLSKSFGDRLL 339
Query: 509 -ED--FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRY 565
+D F L G V I+GPNGAGKSTL ++ G P G ++ + +++ Y
Sbjct: 340 IDDLSFSLP-------PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLA-Y 391
Query: 566 SQHFVDLLTMEET---PVSYLLRLHPDQEGL------SKQEAVRAKLGKFGLPSHNHLTP 616
D L +T +S GL +++ RA +G+F +
Sbjct: 392 VDQSRDALDPNKTVWEEIS---------GGLDIIKVGNREIPSRAYVGRFNFKGGDQQKK 442
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDS 676
+ LSGG++ R+ ++LLLDEPTN LD++++ AL +AL EF G V++SHD
Sbjct: 443 VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDR 502
Query: 677 RLISRVCDDEERSEIWVVE-NGTVSRFPGTFEEYKEDLQREIKAEVD 722
+ R+ + I E + V F G F+EY+ED +R + A+
Sbjct: 503 WFLDRIA-----THILAFEGDSQVEWFEGNFQEYEEDKKRRLGADAA 544
|
Length = 556 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-37
Identities = 41/74 (55%), Positives = 53/74 (71%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFL 380
SGG +MR++LA+ L P LLLLDEPTNHLDL ++ LEE L + T+++VSHDR FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 381 NTVCTEIIHLHDQK 394
+ V T+II L D K
Sbjct: 131 DQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-35
Identities = 74/219 (33%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----RR 556
+SFSYP+ L D+ + I G V IVGPNG+GKSTLL LL G L PT GEV +
Sbjct: 5 LSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD 64
Query: 557 SQKLRIGRYSQH-----------FVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAK 602
KL + + F EE V++ L GL ++E V
Sbjct: 65 LTKLSLKELRRKVGLVFQNPDDQFFGPTVEEE--VAFGLE----NLGLPEEEIEERVEEA 118
Query: 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 662
L GL LSGGQK RV + P ILLLDEPT LD L + L
Sbjct: 119 LELVGLEGLRD-RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 663 DEFTG---GVVLVSHDSRLISRVCDDEERSEIWVVENGT 698
+ +++V+HD L+ + D + V+E+G
Sbjct: 178 KKLKAEGKTIIIVTHDLDLLLELAD-----RVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 28/247 (11%)
Query: 494 PLLQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
++++ ++ Y D L V ++ G ++GPNGAGK+TLL +LAG L PT G
Sbjct: 3 EVIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 553 EVR----------RSQKLRIGRYSQ--HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR 600
E+ + RIG Q LT+ E + + RL+ + +++
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVREN-LEFFARLYGLSKEEAEERIEE 119
Query: 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD 660
L FGL + + LSGG K R+ + P +L+LDEPT+ LD +S + +
Sbjct: 120 L-LELFGLEDKAN-KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWE 177
Query: 661 ALDEFTG----GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQRE 716
L E ++L +H +CD + ++ +G + GT EE KE +
Sbjct: 178 LLRELAKEGGVTILLSTHILEEAEELCD-----RVIILNDGKIIAE-GTPEELKEKFGGK 231
Query: 717 IKAEVDD 723
E++
Sbjct: 232 GVIELEP 238
|
Length = 293 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 18/199 (9%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
++ SY L DV + G +AIVGPNGAGKSTLL + G L PT G +R
Sbjct: 5 LTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKP 62
Query: 556 -RSQKLRIGRYSQHF-VDL---LTMEETPVSYLLRLHPDQEGLSKQ--EAVRAKLGKFGL 608
++ RIG Q +D +++ + + L LSK V L + GL
Sbjct: 63 LEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGL 122
Query: 609 PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG- 667
S I +LSGGQ+ RV+ + P +LLLDEP +D ++ + + + L E
Sbjct: 123 -SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 668 --GVVLVSHDSRLISRVCD 684
+++V+HD L+ D
Sbjct: 182 GMTILVVTHDLGLVLEYFD 200
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 5e-30
Identities = 76/240 (31%), Positives = 107/240 (44%), Gaps = 29/240 (12%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
+++ +SF YP R+ L DV + I+ G RV ++GPNG+GKSTLL LL G L PT GE
Sbjct: 2 RMIEAENLSFRYPGRKAA-LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 554 VRRSQKL------------RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA--- 598
V ++G D T V + + GL ++E
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVG-LVFQNPDDQLFGPT-VEDEVAFGLENLGLPREEIEER 118
Query: 599 VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
V L GL P LSGGQK RV + P ILLLDEPT LD + L
Sbjct: 119 VAEALELVGL-EELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 659 ADALDEF--TGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQ 714
+ L + GG +++V+HD L+ D + V+++G + G E D +
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELVLEYAD-----RVVVLDDGKILAD-GDPAEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 67/211 (31%), Positives = 95/211 (45%), Gaps = 50/211 (23%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
++ VSFSYP R L DV + I G +VAIVGP+G+GKSTLL LL PT GE+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI- 59
Query: 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL- 614
I + L D E L K A +P L
Sbjct: 60 -----LID-------------GVDLRDL-----DLESLRKNIAY--------VPQDPFLF 88
Query: 615 -TPIAK--LSGGQKARVVFTSIS---MSKPHILLLDEPTNHLDMQSIDALADALDEFTGG 668
I + LSGGQ+ R+ +I+ + P IL+LDE T+ LD ++ + +AL G
Sbjct: 89 SGTIRENILSGGQRQRI---AIARALLRDPPILILDEATSALDPETEALILEALRALAKG 145
Query: 669 --VVLVSHDSRLISRVCDDEERSEIWVVENG 697
V++++H I D I V+++G
Sbjct: 146 KTVIVIAHRLSTIRD-AD-----RIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-29
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 51/205 (24%)
Query: 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556
++ +SF Y R +V + + G VA+VGPNG+GKSTLL +AG L PT GE+
Sbjct: 1 EIENLSFRYGGRTALD--NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 557 SQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP 616
I + + + Y+ Q
Sbjct: 59 -DGKDIAKLPLEEL------RRRIGYVP-----------Q-------------------- 80
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVS 673
LSGGQ+ RV + P +LLLDEPT+ LD S + L + L E V++V+
Sbjct: 81 ---LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 674 HDSRLISRVCDDEERSEIWVVENGT 698
HD L D + V+++G
Sbjct: 138 HDPELAELAAD-----RVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 5e-29
Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 43/236 (18%)
Query: 495 LLQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
+++L VS Y + L DV++ I+ G VAIVGP+G+GKSTLLNLL G PT G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 553 EVR------------RSQKLR---IGRYSQ--HFVDLLTMEETPVSYLLRLHPDQEGLSK 595
EV KLR IG Q + + LT+ E + L G S
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLEN-----VELPLLIAGKSA 115
Query: 596 QEAVRAK---LGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS---MSKPHILLLDEPTNH 649
RA L GL ++LSGGQ+ RV +I+ ++ P I+L DEPT +
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRV---AIARALINNPKIILADEPTGN 172
Query: 650 LDMQS----IDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701
LD ++ ++ L + E +++V+HD L D + +++G +
Sbjct: 173 LDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY-AD-----RVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-29
Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 20/210 (9%)
Query: 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
P++++ ++ SY NR L D+ + ++ G A++GPNGAGKSTLL + G L P+ G
Sbjct: 2 MPMIEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59
Query: 553 EVR--------RSQKLRIGRYSQHF-VDL---LTMEETPVSYLLRLHPDQEGLSKQ--EA 598
E++ R ++LRIG Q VD +T+++ + L+K+ E
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 599 VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
V L + G+ I +LSGGQK RV+ P +LLLDEP +D+ +
Sbjct: 120 VDEALERVGM-EDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEI 178
Query: 659 ADALDEF--TG-GVVLVSHDSRLISRVCDD 685
D L E G V++V+HD L+ D
Sbjct: 179 YDLLKELRQEGKTVLMVTHDLGLVMAYFDR 208
|
Length = 254 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 68/209 (32%), Positives = 100/209 (47%), Gaps = 47/209 (22%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL 560
+S Y R L D+ + I+ G V I+GPNGAGKSTLL LAG L P+ GE+
Sbjct: 5 LSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI------ 56
Query: 561 RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA-VRAKLGKFGLPSHNHLT--PI 617
++ ++ L P + L+++ A V L GL HL P
Sbjct: 57 -------------LLDGKDLA---SLSPKE--LARKIAYVPQALELLGL---AHLADRPF 95
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD-------MQSIDALADALDEFTGGVV 670
+LSGG++ RV+ +P ILLLDEPT+HLD ++ + LA E VV
Sbjct: 96 NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA---RERGKTVV 152
Query: 671 LVSHDSRLISRVCDDEERSEIWVVENGTV 699
+V HD L +R D + ++++G +
Sbjct: 153 MVLHDLNLAARYAD-----RVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 35/229 (15%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
+L++ +SF Y + L D+ I G I+GPNG+GKSTLL LAG L P GE
Sbjct: 1 MMLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 554 VRRSQKLRIGRYS-----QHFVDLLTMEETPVSY------LLRLHPDQEGLSK-----QE 597
V K I S + + P LL +P + +E
Sbjct: 59 VLLDGK-DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 598 AVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS---KPHILLLDEPTNHLDMQS 654
V L GL H P+ +LSGG++ RV I+ + + ILLLDEPT+HLD+
Sbjct: 118 IVEEALELLGL-EHLADRPVDELSGGERQRV---LIARALAQETPILLLDEPTSHLDIAH 173
Query: 655 IDALADALDEFTG----GVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ + L + VV+V HD L +R D + ++++G +
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD-----HLILLKDGKI 217
|
Length = 258 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-28
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 49/213 (23%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
+++ +S Y + L D+ + ++ G ++GPNGAGK+TL+ ++ G L P GE++
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLG----KFGLPSH 611
++ + E V+ ++G + L +
Sbjct: 59 VL-------------------------------GKDIKKEPEEVKRRIGYLPEEPSLYEN 87
Query: 612 NHLTPI--AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--- 666
LT KLSGG K R+ + P +L+LDEPT+ LD +S + L E
Sbjct: 88 --LTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG 145
Query: 667 GGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
++L SH R+CD + ++ NG +
Sbjct: 146 KTILLSSHILEEAERLCD-----RVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 5e-28
Identities = 87/268 (32%), Positives = 118/268 (44%), Gaps = 46/268 (17%)
Query: 448 SAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPN 507
A A++ A V + P P A K T P L+ VS +YP
Sbjct: 287 RADGVAAAE--ALFAVLDAAPRPLAGKA-----------PVTAAPAPSLEFSGVSVAYPG 333
Query: 508 REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQKL------ 560
R L V + G RVA+VGP+GAGKSTLLNLL G + PTEG + L
Sbjct: 334 R-RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392
Query: 561 ----RIGRYSQHFVDLLTMEETPVSYLLRL-HPDQEGLSKQEAV-RAKLGKF--GLPSHN 612
+I QH + ++ +RL PD +EA+ RA L +F LP
Sbjct: 393 SWRDQIAWVPQH----PFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGL 448
Query: 613 HLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG 668
TPI A LSGGQ R+ + +LLLDEPT HLD ++ + +AL G
Sbjct: 449 D-TPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQG 507
Query: 669 --VVLVSHDSRLISRVCDDEERSEIWVV 694
V+LV+H ++ + D I V+
Sbjct: 508 RTVLLVTHR-LALAALAD-----RIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 6e-27
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 41/233 (17%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL 560
VSF Y + L D+ + I G +VAIVG +G+GKSTLL LL G P +G +
Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI------ 530
Query: 561 RIGRYSQHFVDLLTMEETPVSYLL-----------------RLHPDQEGLSKQEAVRAKL 603
+ + +DL ++ V Y+L E + + A A
Sbjct: 531 LLDGVDLNDIDLASLRRQ-VGYVLQDPFLFSGSIRENIALGNPEATDEEI-IEAAQLAGA 588
Query: 604 GKF--GLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDA 657
+F LP + TP+ A LSGGQ+ R+ +SKP ILLLDE T+ LD ++
Sbjct: 589 HEFIENLP-MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAI 647
Query: 658 LADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
+ L + G V++++H I R D I V++ G + G+ EE
Sbjct: 648 ILQNLLQILQGRTVIIIAHRLSTI-RSAD-----RIIVLDQGKIVE-QGSHEE 693
|
Length = 709 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-- 554
++ +SFSY + L D+ + + G +A+ G NGAGK+TL +LAG + + G +
Sbjct: 1 RIENISFSY-KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 555 ---RRSQKLR---IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL 608
K R IG Q L + LL L G + E V L + L
Sbjct: 60 NGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL 119
Query: 609 PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG- 667
+ L+ LSGGQK R+ + +S +L+ DEPT+ LD ++++ + + + E
Sbjct: 120 KERHPLS----LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 668 --GVVLVSHDSRLISRVCD 684
V++++HD +++VCD
Sbjct: 176 GKAVIVITHDYEFLAKVCD 194
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 70/194 (36%), Positives = 105/194 (54%), Gaps = 18/194 (9%)
Query: 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
L+ L VS S+ R LSDV + + G + ++GPNGAGKSTL+ ++ G ++P EG
Sbjct: 2 TSLVSLENVSVSFGQRR--VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG 59
Query: 553 EVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHP---DQEGLSKQEAVRAKLGKFGLP 609
++R+ KLRIG Q T+ T V+ LRL P ++ L + V+A
Sbjct: 60 VIKRNGKLRIGYVPQKLYLDTTLPLT-VNRFLRLRPGTKKEDILPALKRVQA-------- 110
Query: 610 SHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALD----EF 665
H P+ KLSGG+ RV+ +++P +L+LDEPT +D+ AL D +D E
Sbjct: 111 GHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL 170
Query: 666 TGGVVLVSHDSRLI 679
V++VSHD L+
Sbjct: 171 DCAVLMVSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 9e-26
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 29/225 (12%)
Query: 494 PLLQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
LL + +S Y + L++V + I+ G + IVG +G+GKSTL LLAG P+
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 552 GEVRR--SQKLRIGRYSQHFVDLLTMEETPVSYLLRLHP------------DQEGLSK-Q 596
G + R + + + + P S L+P GLSK Q
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS---SLNPRRTVGRILSEPLRPHGLSKSQ 118
Query: 597 EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM---- 652
+ + L + GLP +LSGGQ+ R+ + +P +L+LDEPT+ LD+
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178
Query: 653 QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENG 697
Q ++ L + E + +SHD L+ +CD I V++NG
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDR-----IAVMDNG 218
|
Length = 252 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 68/250 (27%), Positives = 109/250 (43%), Gaps = 58/250 (23%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
+K+++ FS + L S+ I G+ +VGPNG GKSTLL+LL P +
Sbjct: 2 LKNLS---FSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSG 56
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS-LQNS------TSVDGEED----- 270
+VL+ +++ L +LR +V QN +V EE+
Sbjct: 57 EVLVDGKDL-------------TKLSLKELRRKVGLVFQNPDDQFFGPTV--EEEVAFGL 101
Query: 271 ---GDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRM 327
G + E++ E E + + + ++ R + SGG +
Sbjct: 102 ENLGLPEEEIEERVEEALELVGL--------------------EGLRDRSPFTLSGGQKQ 141
Query: 328 RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK---KTLVVVSHDRDFLNTVC 384
R+++A L + P +LLLDEPT LD L E L + K KT+++V+HD D L +
Sbjct: 142 RVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELA 201
Query: 385 TEIIHLHDQK 394
+I L D K
Sbjct: 202 DRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 25/207 (12%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV- 554
LQ+ ++ +Y + D+ + + G ++G NGAGK+T L +L G+L PT G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 555 ---------RRSQKLRIGRYSQH--FVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VR 600
R++ + +G Q D LT+ E + + RL GL K E V
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREH-LRFYARLK----GLPKSEIKEEVE 115
Query: 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS-MSKPHILLLDEPTNHLDMQSIDALA 659
L GL + LSGG K R + +I+ + P +LLLDEPT+ LD S A+
Sbjct: 116 LLLRVLGLTDKAN-KRARTLSGGMK-RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 660 DALDEFTGG--VVLVSHDSRLISRVCD 684
D + E G ++L +H +CD
Sbjct: 174 DLILEVRKGRSIILTTHSMDEAEALCD 200
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-25
Identities = 74/236 (31%), Positives = 106/236 (44%), Gaps = 58/236 (24%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
++ VSFSYPN+E L +V + I G +VAI+G G+GKSTLL LLAG PT G V
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 556 ---------RSQKLR--IGRYSQHFV-------DLLTM--------------EETPVSYL 583
LR IG Q D +T+ E V+
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDF 122
Query: 584 LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643
+ HP+ GL Q +G+ G LSGGQ+ V ++ P ILLL
Sbjct: 123 VNKHPN--GLDLQ------IGERG----------RGLSGGQRQAVALARALLNDPPILLL 164
Query: 644 DEPTNHLDMQSIDALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENG 697
DEPT+ +DM S + L + L + G +++++H L+ V I V+++G
Sbjct: 165 DEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV------DRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-25
Identities = 79/238 (33%), Positives = 111/238 (46%), Gaps = 43/238 (18%)
Query: 495 LLQLIEVSFSYPNREDFK---LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
+++L VS ++ L DV + I G I+G +GAGKSTLL L+ PT
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 552 GEV--------------RRSQKLRIGRYSQHFVDLL---TMEETPVSYLLRLHPDQEGLS 594
G V R + +IG QHF +LL T+ E V++ L L G+
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHF-NLLSSRTVFEN-VAFPLELA----GVP 114
Query: 595 KQEA---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
K E V L GL P A+LSGGQK RV + P ILL DE T+ LD
Sbjct: 115 KAEIKQRVAELLELVGLSDKADRYP-AQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 652 MQS----IDALADALDEFTGGVVLVSHDSRLISRVCD-----DEERSEIWVVENGTVS 700
++ ++ L D E +VL++H+ ++ R+CD D+ R +VE GTVS
Sbjct: 174 PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGR----LVEEGTVS 227
|
Length = 339 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-25
Identities = 69/200 (34%), Positives = 94/200 (47%), Gaps = 27/200 (13%)
Query: 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
LL++ VS S+ E L D+++ ++ G VAI+GP+G GKSTLL L+AG PT G
Sbjct: 1 MALLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58
Query: 553 EVR------RSQKLRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEA---VRA 601
EV IG Q L LT+ + + L + G SK EA +
Sbjct: 59 EVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDN-----VALGLELRGKSKAEARERAKE 113
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD------MQSI 655
L GL P +LSGG + RV ++P +LLLDEP LD +Q
Sbjct: 114 LLELVGLAGFEDKYP-HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ-- 170
Query: 656 DALADALDEFTGGVVLVSHD 675
D L +E V+LV+HD
Sbjct: 171 DELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 79/243 (32%), Positives = 110/243 (45%), Gaps = 38/243 (15%)
Query: 497 QLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
+L ++ +F L D+ I G RV I+G NGAGKSTLL L+AG PT G+V+
Sbjct: 26 RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85
Query: 556 RSQKLR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR--------AKLGK 605
+ K+ I F LT E L L GL+++E A+LG
Sbjct: 86 VTGKVAPLIE-LGAGFDPELTGRENIYLRGLIL-----GLTRKEIDEKVDEIIEFAELGD 139
Query: 606 FGLPSHNHLTPIAKLSGGQKARVVFTSISMS-KPHILLLDEPTNHLDMQSIDALADALDE 664
F P+ S G AR+ F S++ +P ILLLDE D + + L+E
Sbjct: 140 FI------DQPVKTYSSGMYARLAF-SVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE 192
Query: 665 F---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE----YKEDLQREI 717
+VLVSHD I + CD IW +E+G + R G+ EE Y+EDL +
Sbjct: 193 LVEKNKTIVLVSHDLGAIKQYCD----RAIW-LEHGQI-RMEGSPEEVIPAYEEDLADRL 246
Query: 718 KAE 720
Sbjct: 247 SLN 249
|
Length = 249 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 73/250 (29%), Positives = 105/250 (42%), Gaps = 53/250 (21%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ ++N S GK +L S I G+ G++GPNG GKSTLLK LA + PK+ +VL
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA-GLLK-PKSGEVL 60
Query: 226 LVEQEVVGDDRSAIQ-----AVVSAH---------EELVKL-REEVASLQNSTSVDGEED 270
L +++ S + A V ELV L R +ED
Sbjct: 61 LDGKDI--ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR---YPHLGLFGRPSKED 115
Query: 271 GDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRIS 330
E + L LG + + RP SGG R R+
Sbjct: 116 --------------------------EEIVEEALELLG-LEHLADRPVDELSGGERQRVL 148
Query: 331 LARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTE 386
+ARAL + +LLLDEPT+HLD+ + + E L + T+V+V HD +
Sbjct: 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADH 208
Query: 387 IIHLHDQKLH 396
+I L D K+
Sbjct: 209 LILLKDGKIV 218
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 73/215 (33%), Positives = 105/215 (48%), Gaps = 38/215 (17%)
Query: 496 LQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
++L +S +Y + L V + I+ G VAIVGP+G+GKSTLLN+L G PT GE
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 554 VR------------RSQKLR---IGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQ 596
VR R IG Q F + LT E V L L G+ K+
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALEN-VELPLLLA----GVPKK 115
Query: 597 EA-VRAK--LGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS---MSKPHILLLDEPTNHL 650
E RA+ L + GL + P ++LSGGQ+ RV +I+ + P I+L DEPT +L
Sbjct: 116 ERRERAEELLERVGLGDRLNHYP-SELSGGQQQRV---AIARALANDPKIILADEPTGNL 171
Query: 651 DMQS----IDALADALDEFTGGVVLVSHDSRLISR 681
D ++ ++ L + E +V+V+HD L
Sbjct: 172 DSETGKEVMELLRELNKEAGTTIVVVTHDPELAEY 206
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 100 bits (253), Expect = 5e-24
Identities = 65/219 (29%), Positives = 96/219 (43%), Gaps = 45/219 (20%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------------RSQKL 560
L DV + G ++GPNGAGK+TL NL++G L PT G V +L
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 561 RIGRYSQH---FVDLLTMEE---------TPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL 608
IGR Q F + LT+ E T LL +E +++ A L + GL
Sbjct: 76 GIGRTFQIPRLFPE-LTVLENVMVAAQARTGSGLLLARARREEREARERAEEL-LERVGL 133
Query: 609 PSHNHLTPIAKLSGGQK-----ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALD 663
P +LS GQ+ AR + + P +LLLDEP L+ + + LA+ +
Sbjct: 134 ADLAD-RPAGELSYGQQRRLEIARAL-----ATDPKLLLLDEPAAGLNPEETEELAELIR 187
Query: 664 EFTG---GVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
E V+LV HD ++ + D + V++ G V
Sbjct: 188 ELRERGITVLLVEHDMDVVMSLAD-----RVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 68/240 (28%), Positives = 102/240 (42%), Gaps = 46/240 (19%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------------RSQKL 560
++DV + + G V ++GPNGAGK+TL NL+ G P+ G V R +L
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 561 RIGRYSQH---FVDLLTMEETPVSYLLRLHPDQ-----EGLSKQEAVRAK----LGKFGL 608
I R Q F L +E V RL ++ R + L GL
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 609 PSHNHLTPIAKLSGGQK-----ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL- 662
P LS GQ+ AR + ++P +LLLDEP L+ + + LA+ +
Sbjct: 140 GELAD-RPAGNLSYGQQRRLEIARAL-----ATQPKLLLLDEPAAGLNPEETEELAELIR 193
Query: 663 ---DEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKA 719
D ++L+ HD +L+ + D I V+ G V GT EE + + R I+A
Sbjct: 194 ELRDRGGVTILLIEHDMKLVMGLADR-----IVVLNYGEVI-AEGTPEEVRNN-PRVIEA 246
|
Length = 250 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 1e-23
Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 49/215 (22%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L+L VS Y + L+DV + I+ G VA++GP+G+GKSTLL +AG P G +
Sbjct: 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI- 57
Query: 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLG----KFGLPSH 611
++ ++ L P R ++G F L H
Sbjct: 58 ------------------LIDGEDLTDLEDELPPL---------RRRIGMVFQDFALFPH 90
Query: 612 NHLTPIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----D 663
LT + LSGGQ+ RV P +LLLDEPT+ LD + + L
Sbjct: 91 --LTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA 148
Query: 664 EFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698
+ VVLV+HD +R+ D + V+ +G
Sbjct: 149 QLGITVVLVTHDLDEAARLAD-----RVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 2e-23
Identities = 65/199 (32%), Positives = 90/199 (45%), Gaps = 27/199 (13%)
Query: 496 LQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
L++ VS +Y L D+ + ++ G VA+VGP+G GKSTLL ++AG PT GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 554 VR------RSQKLRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEA---VRAK 602
V G Q L LT+ + V+ L L G+ K EA
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDN-VALGLELQ----GVPKAEARERAEEL 115
Query: 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 662
L GL + P +LSGG + RV P +LLLDEP + LD + + L + L
Sbjct: 116 LELVGLSGFENAYP-HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174
Query: 663 ------DEFTGGVVLVSHD 675
T V+LV+HD
Sbjct: 175 LDIWRETGKT--VLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 75/243 (30%), Positives = 111/243 (45%), Gaps = 33/243 (13%)
Query: 488 PTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL 547
+ PL+++ V+ S+ +R L VD+ + G +AI+G +G+GKSTLL L+ G L
Sbjct: 1 MSASPEPLIEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58
Query: 548 SPTEGEVR------------RSQKLR--IGRYSQH---FVDLLTMEETPVSYLLRLHPDQ 590
P +GE+ ++R +G Q F L E V++ LR H
Sbjct: 59 RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFEN--VAFPLREHTKL 116
Query: 591 EGLSKQEAVRAKLGKFGL-PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH 649
+E V KL GL + L P ++LSGG + RV P +L LDEPT+
Sbjct: 117 PESLIRELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 650 LD---MQSIDALADAL-DEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705
LD ID L L D V++V+HD + + D + V+ +G V GT
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIAD-----RVAVLADGKVI-AEGT 229
Query: 706 FEE 708
EE
Sbjct: 230 PEE 232
|
Length = 263 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 77/245 (31%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 486 PEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545
P+P + T ++ VSFSYP ++ L D+ I+ G +VAIVGP+G+GKSTL+ LL
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKKPV-LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR 377
Query: 546 DLSPTEGEVR---------RSQKLR--IGRYSQHFVDLLTMEET---PVSYLLRLHPDQE 591
PT GE+ LR IG SQ D L T ++ D+E
Sbjct: 378 LYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ---DPLLFSGTIRENIALGRPDATDEE 434
Query: 592 GLSKQEAVRAKLGKF--GLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDE 645
++ A +F LP T + LSGGQ+ R+ + P IL+LDE
Sbjct: 435 --IEEALKLANAHEFIANLPDGYD-TIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491
Query: 646 PTNHLDMQSIDALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703
T+ LD ++ + DAL + G ++++H I D I V++NG +
Sbjct: 492 ATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-AD-----RIIVLDNGRIVER- 544
Query: 704 GTFEE 708
GT EE
Sbjct: 545 GTHEE 549
|
Length = 567 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-23
Identities = 85/270 (31%), Positives = 123/270 (45%), Gaps = 47/270 (17%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
+ +L S + + G R GL+G NG GKSTL+KLLA PV I +
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-----------AK 373
Query: 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAE 297
I+ A +L LR + + LQ+ LA L + E
Sbjct: 374 GIKLGYFAQHQLEFLRADESPLQH-------------------LARLAPQ-------ELE 407
Query: 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL 357
+ L G GF + T+ FSGG + R+ LA ++ +P LLLLDEPTNHLDL
Sbjct: 408 QKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467
Query: 358 WLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMN 417
L E L ++ LVVVSHDR L + ++ +HD K+ + G+ +D Y+Q ++
Sbjct: 468 ALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLED----YQQWLSDVQ 523
Query: 418 KKFEIYEKQVKAAKR--SGNRVQQEKVKDR 445
K+ E Q A + + N Q K + R
Sbjct: 524 KQ----ENQTDEAPKENNANSAQARKDQKR 549
|
Length = 638 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-23
Identities = 90/282 (31%), Positives = 130/282 (46%), Gaps = 47/282 (16%)
Query: 449 AAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNR 508
AAA EA+ +K ++ P + +K E P E+ L +SF YP+
Sbjct: 284 AAAGEAAADKLFTLLESPVATPGSGEK-----AEVANEPPIEI-----SLENLSFRYPD- 332
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------------- 555
LSD+++ I G A+VG +GAGKSTLLNLL G L+PT+GE+R
Sbjct: 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392
Query: 556 -RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV-RAKLGKFGLPSHNH 613
R Q + + F T+ E +L PD A+ +A L +F +P +
Sbjct: 393 WRKQISWVSQNPYLFAG--TIREN----ILLARPDASDEEIIAALDQAGLLEF-VPKPDG 445
Query: 614 L-TPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG 668
L T I A LSGGQ R+ +S +LLLDEPT HLD ++ + AL E
Sbjct: 446 LDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505
Query: 669 --VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
V++++H + D I V++NG + GT EE
Sbjct: 506 KTVLVITHRLEDAAD-AD-----RIVVLDNGRL-VEQGTHEE 540
|
Length = 559 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 3e-23
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 21/184 (11%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQKLR--IGRY 565
E SD+ ++ G + I GPNGAGK+TLL +LAG L P GEV + + ++ Y
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 566 SQHFVDL---------LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP 616
Q + L LT E L G + L + GL L P
Sbjct: 74 HQALLYLGHQPGIKTELTALEN-----LHFWQRFHGSGNAATIWEALAQVGLAGLEDL-P 127
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVS 673
+ +LS GQ+ RV + +S + +LDEP LD + + L + G V+L +
Sbjct: 128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTT 187
Query: 674 HDSR 677
H
Sbjct: 188 HQPL 191
|
Length = 209 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-23
Identities = 76/242 (31%), Positives = 108/242 (44%), Gaps = 66/242 (27%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG--- 552
++ VSF+YP +E L +V + I G +VAI+G G+GKSTLL LL G PTEG
Sbjct: 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523
Query: 553 ------------EVRRSQKLRIGRYSQHFV-------DLLTM--------------EETP 579
++RR IG Q D + + E
Sbjct: 524 LDGVDIRQIDPADLRR----NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAG 579
Query: 580 VSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639
V+ +R HPD GL Q +G+ G LSGGQ+ V + P
Sbjct: 580 VTEFVRRHPD--GLDMQ------IGERG----------RSLSGGQRQAVALARALLRDPP 621
Query: 640 ILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENG 697
ILLLDEPT+ +D +S + D L + G +VLV+H + L+ V +R I V++NG
Sbjct: 622 ILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV----DR--IIVMDNG 675
Query: 698 TV 699
+
Sbjct: 676 RI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 5e-23
Identities = 69/193 (35%), Positives = 96/193 (49%), Gaps = 25/193 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----------------- 555
L V++ + G VAIVGP+G+GKSTLL +LAG P+ GEVR
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85
Query: 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLT 615
R++ + S H + LT E V+ L L + S+ A +A L GL
Sbjct: 86 RARHVGFVFQSFHLIPNLTALEN-VALPLELRGESSADSRAGA-KALLEAVGLGKRLTHY 143
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTGGVVL 671
P A+LSGG++ RV +P +L DEPT +LD + D +AD L E +VL
Sbjct: 144 P-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVL 202
Query: 672 VSHDSRLISRVCD 684
V+HD +L +R CD
Sbjct: 203 VTHDPQLAAR-CD 214
|
Length = 228 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 29/239 (12%)
Query: 162 NVKDITIDNFSVA-ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK 220
++ I + N + K L S + G+ +GL+GPNG GK+TLLK+LA P
Sbjct: 1 MIEVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 221 NIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEK 280
I VL G D +E K+R + + S+ E +
Sbjct: 61 EILVL-------GYDV---------VKEPAKVRRRIGYVPQEPSLYPELTV-------RE 97
Query: 281 LAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
E + +L L + AE + ++L G + + ++ SGG + R+S+A AL P
Sbjct: 98 NLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRLSIALALLHDPE 156
Query: 341 LLLLDEPTNHLD--LRAVLW--LEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
LL+LDEPT+ LD R +W L E T+++ +H + +C +I L+D K+
Sbjct: 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215
|
Length = 293 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 3e-22
Identities = 80/237 (33%), Positives = 110/237 (46%), Gaps = 38/237 (16%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
++L ++ S+ R L VD+ + G +AI+GP+G+GKSTLL L+ G L P GEV
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 556 ----------RSQKLRIGRYS----QH---FVDLLTMEETPVSYLLRLHPDQEGLSK--- 595
++ R+ R Q F D LT+ E V++ LR H LS+
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALF-DSLTVFEN-VAFPLREHTR---LSEEEI 113
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---M 652
+E V KL GL L P A+LSGG K RV P +LL DEPT LD
Sbjct: 114 REIVLEKLEAVGLRGAEDLYP-AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
Query: 653 QSIDALADAL-DEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
ID L +L E ++V+HD + D I V+ +G + GT EE
Sbjct: 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIAD-----RIAVLYDGKI-VAEGTPEE 223
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 5e-22
Identities = 60/194 (30%), Positives = 84/194 (43%), Gaps = 27/194 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-----------RRSQKLR 561
+ VDV G+ ++GPNG+GKSTLL LLAG L P G V RR++ R
Sbjct: 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76
Query: 562 IGRYSQH--------FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH 613
+ Q D++ + P L + V L + L SH
Sbjct: 77 VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHD----AAVVDRALARTEL-SHLA 131
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VV 670
++ LSGG++ RV +P +LLLDEPTNHLD+++ + E VV
Sbjct: 132 DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
Query: 671 LVSHDSRLISRVCD 684
HD L + CD
Sbjct: 192 AALHDLNLAASYCD 205
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-22
Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 48/258 (18%)
Query: 467 EPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRV 526
+ + + V F E T T L+L VSF+YP ++ L + ++ + G +V
Sbjct: 314 NDILDQKPE-----VTFP-DEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKV 367
Query: 527 AIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKLR--IGRYSQ--HFVD-- 571
AI+G +G+GKSTLL LLAG P +G + Q LR I +Q H
Sbjct: 368 AILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT 427
Query: 572 ----LLTMEETPVSYLLRLHPDQEGLSKQ-----EAVRAKLGKFGLPSHNHLTPIAKLSG 622
L L Q GL K + + LG+ G LSG
Sbjct: 428 LRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRR----------LSG 477
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSHDSRLIS 680
G++ R+ + + LLDEPT LD + + L E G +++V+H R +
Sbjct: 478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537
Query: 681 RVCDDEERSEIWVVENGT 698
R D I V++NG
Sbjct: 538 R-MD-----RIIVLDNGK 549
|
Length = 573 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 6e-22
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 43/238 (18%)
Query: 166 ITIDNFSVAARGKE----LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA-WRKIPVPK 220
+++ N S+ G + L + S+ I G+ G+VG +G GKSTL +LLA K P
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PS 60
Query: 221 NIDVLLVEQEVVGDDRS-----AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDAN 275
+ +LL + + R+ +Q V +SL +V
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPY---------SSLNPRRTVG--------- 102
Query: 276 DAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE-MQGRPTKSFSGGWRMRISLARA 334
L E L+ G ++ + +++L +G + RP + SGG R RI++ARA
Sbjct: 103 ------RILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHE-LSGGQRQRIAIARA 155
Query: 335 LFVQPTLLLLDEPTNHLDLR---AVLWLEEYLCR-WKKTLVVVSHDRDFLNTVCTEII 388
L +P LL+LDEPT+ LD+ +L L L + T + +SHD + +C I
Sbjct: 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIA 213
|
Length = 252 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 1e-21
Identities = 65/211 (30%), Positives = 91/211 (43%), Gaps = 45/211 (21%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L++ VSF YP E L +V I+ G +AI+GP+G+GKSTL L+ G L PT G VR
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 556 ----RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH 611
+ H V YL + D E S G +
Sbjct: 61 LDGADISQWDPNELGDH-----------VGYLPQ---DDELFS------------GSIAE 94
Query: 612 NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA---LDEFTGG 668
N I LSGGQ+ R+ P IL+LDEP +HLD++ AL A L
Sbjct: 95 N----I--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGAT 148
Query: 669 VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
++++H ++ I V+E+G V
Sbjct: 149 RIVIAHRPETLASA------DRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-21
Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 23/207 (11%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+++ VS +YP L DV + I G + + GP+GAGK+TLL LL G L+P+ G+V
Sbjct: 1 MIEFHNVSKAYPGGVA-ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 555 ------------RRSQKLR--IGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEA 598
R+ LR IG Q F + T+ E V+ L + +E Q
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYEN-VALPLEVRGKKEREI-QRR 117
Query: 599 VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSI 655
V A L + GL H +LSGG++ RV ++ P +LL DEPT +LD + I
Sbjct: 118 VGAALRQVGL-EHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERI 176
Query: 656 DALADALDEFTGGVVLVSHDSRLISRV 682
L L++ V++ +HD L+ RV
Sbjct: 177 LDLLKRLNKRGTTVIVATHDLSLVDRV 203
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 72/252 (28%), Positives = 109/252 (43%), Gaps = 38/252 (15%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV- 554
+++ +S +YP L DV++ I+ G VAI+GP+GAGKSTLL L G + PT GE+
Sbjct: 4 IEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 555 -------------RRSQKLRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGL----SK 595
R + IG Q F V L++ E + L L SK
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 596 QEAVRA--KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
++ +A L + G+ + LSGGQ+ RV + +P I+L DEP LD +
Sbjct: 123 EDKAQALDALERVGI-LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181
Query: 654 S----IDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709
S +D L D E V++ H L + D I ++ G + F+
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYAD-----RIIGLKAGRI-----VFDGP 231
Query: 710 KEDLQREIKAEV 721
+L E E+
Sbjct: 232 ASELTDEALDEI 243
|
Length = 258 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 4e-21
Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 37/247 (14%)
Query: 493 PPLLQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
P L++ ++ +P DV + + G A++G NGAGKSTL+ +L G P
Sbjct: 2 EPALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS 58
Query: 552 GEV------------RRSQKLRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQE 597
GE+ R + +L IG QHF V LT+ E + +L L P + GL +
Sbjct: 59 GEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAE---NIILGLEPSKGGLIDRR 115
Query: 598 AVRAKLG----KFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
RA++ ++GLP +A LS G++ RV +L+LDEPT L Q
Sbjct: 116 QARARIKELSERYGLPVDPDA-KVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 654 SIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710
D L + L ++ ++H + + + D + V+ G V GT +
Sbjct: 175 EADELFEILRRLAAEGKTIIFITHKLKEVMAIADR-----VTVLRRGKVV---GTVDPVA 226
Query: 711 EDLQREI 717
E + E+
Sbjct: 227 ETTEEEL 233
|
Length = 501 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 7e-21
Identities = 60/198 (30%), Positives = 79/198 (39%), Gaps = 31/198 (15%)
Query: 505 YPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564
YP + L ++ + G +A++G NGAGKSTLL L G L P G V L G
Sbjct: 1 YPGGPEV-LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV-----LIDGE 54
Query: 565 YSQHFVDLLTMEETPVSYLLRLHPDQE-----------------GLSKQEA---VRAKLG 604
+ L V + + PD + GLS+ E VR L
Sbjct: 55 PLDYSRKGLLERRQRVGLVFQ-DPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALT 113
Query: 605 KFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664
G S P LSGG+K RV +P +LLLDEPT LD + + L
Sbjct: 114 AVGA-SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 665 FTG---GVVLVSHDSRLI 679
VV+ +HD L
Sbjct: 173 LRAEGMTVVISTHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 8e-21
Identities = 65/209 (31%), Positives = 87/209 (41%), Gaps = 36/209 (17%)
Query: 495 LLQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
L+ + + +F L DV + G R+ ++G NGAGKSTLL LLAG P G
Sbjct: 19 SLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT 78
Query: 554 VRRSQKLR------IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK----- 602
V ++ G F LT E + RL GLS++E + K
Sbjct: 79 VTVRGRVSSLLGLGGG-----FNPELTGREN-IYLNGRLL----GLSRKE-IDEKIDEII 127
Query: 603 ----LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
LG F P+ S G KAR+ F + +P ILL+DE D +
Sbjct: 128 EFSELGDFI------DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181
Query: 659 ADALDEF---TGGVVLVSHDSRLISRVCD 684
L E V+LVSHD I R+CD
Sbjct: 182 QRRLRELLKQGKTVILVSHDPSSIKRLCD 210
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 9e-21
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 25/196 (12%)
Query: 495 LLQLIEVSFSYPNREDFKL-SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
+L+ ++ R++ L S + ++ G V I GPNGAGK++LL +LAG P GE
Sbjct: 1 MLEARNLACE---RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGE 57
Query: 554 VR-RSQKLRIGRYSQH----FV-------DLLTMEETPVSYLLRLHPDQEGLSKQEAVRA 601
V + + +R R H ++ LT E + + RLH G EA+
Sbjct: 58 VLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALEN-LRFYQRLH----GPGDDEALWE 112
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661
L + GL + P+ +LS GQ+ RV + +++ + +LDEP +D Q + L
Sbjct: 113 ALAQVGLAGFEDV-PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 662 LDEFT--GG-VVLVSH 674
L + GG V+L +H
Sbjct: 172 LAQHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 43/232 (18%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ--EVVGD 234
K LK S+ I G+R L+GPNG GKSTLLKLL LL EV+ D
Sbjct: 16 RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN-----------GLLKPTSGEVLVD 64
Query: 235 DRSAIQAVVSAHEELVKLREEVA-SLQN------STSVDGEEDGDDANDAGEKLAELYEK 287
S+ + L++LR++V QN +V E++ +A E
Sbjct: 65 GL-----DTSSEKSLLELRQKVGLVFQNPDDQLFGPTV--EDE----------VAFGLEN 107
Query: 288 LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
L L + E + ++ L +G E+ RP + SGG + R+++A L + P +LLLDEP
Sbjct: 108 LG-LPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEP 165
Query: 348 TNHLDLRAVLWLEEYLCRWK----KTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
T LD + L E L + K KT+++V+HD + + ++ L D K+
Sbjct: 166 TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217
|
Length = 235 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-20
Identities = 62/207 (29%), Positives = 91/207 (43%), Gaps = 42/207 (20%)
Query: 506 PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRY 565
P +E K D+ + G ++ ++G NGAGKSTLL ++AG GE R + +++G
Sbjct: 16 PKKEILK--DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYL 73
Query: 566 SQ-------------------HFVDLLT-MEETPVSYLLRLHPDQEG---LSKQEAVRAK 602
Q D L E PD + L++Q ++
Sbjct: 74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEI---SAKFAEPDADMDALLAEQAELQEI 130
Query: 603 LGKFGLPSHNHLTPIA--------------KLSGGQKARVVFTSISMSKPHILLLDEPTN 648
+ + IA KLSGG++ RV + +SKP +LLLDEPTN
Sbjct: 131 IDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTN 190
Query: 649 HLDMQSIDALADALDEFTGGVVLVSHD 675
HLD +S+ L L E+ G VV V+HD
Sbjct: 191 HLDAESVAWLEQHLQEYPGTVVAVTHD 217
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 72/234 (30%), Positives = 103/234 (44%), Gaps = 40/234 (17%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L+ + F + L DV + + G I+G +GAGKSTL+ + G PT G V
Sbjct: 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63
Query: 556 --------------RSQKLRIGRYSQHFVDLL---TMEETPVSYLLRLHPDQEGLSKQEA 598
R + RIG QHF +LL T+ E V+ L + G+ K E
Sbjct: 64 VDGTDLTLLSGKELRKARRRIGMIFQHF-NLLSSRTVFEN-VALPLEIA----GVPKAEI 117
Query: 599 ---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS- 654
V L GL A+LSGGQK RV + P +LL DE T+ LD ++
Sbjct: 118 EERVLELLELVGL-EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 655 ---IDALADALDEFTGGVVLVSHDSRLISRVCD-----DEERSEIWVVENGTVS 700
+ L D E +VL++H+ ++ R+CD ++ VVE GTV
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGE----VVEEGTVE 226
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 36/219 (16%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
+++ +S +YPN + L DV + I+ G VA++GP+GAGKSTLL L G + PT G V
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 556 --------------RSQKLRIGRYSQHF--VDLLTMEE----------TPVSYLLRLHPD 589
R + +IG Q F ++ L++ E + L L P
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 590 QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH 649
+E KQ A+ A L + GL +LSGGQ+ RV M +P ++L DEP
Sbjct: 120 EE---KQRALAA-LERVGLLDK-AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 650 LDMQS----IDALADALDEFTGGVVLVSHDSRLISRVCD 684
LD S +D L E V++ H L D
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYAD 213
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 3e-20
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 26/198 (13%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L+L +S +Y L D+ + ++ G +A++GP+G GK+TLL L+AG P GE+
Sbjct: 1 LELKGLSKTY--GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 556 RS---------QKLRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEA---VRA 601
++ IG Q + LT+ E +++ L+L G+ K E VR
Sbjct: 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAEN-IAFGLKLR----GVPKAEIRARVRE 113
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS----IDA 657
L GL + P +LSGGQ+ RV +P +LLLDEP + LD + +
Sbjct: 114 LLELVGLEGLLNRYP-HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172
Query: 658 LADALDEFTGGVVLVSHD 675
L + E + V+HD
Sbjct: 173 LKELQRELGITTIYVTHD 190
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-20
Identities = 73/222 (32%), Positives = 102/222 (45%), Gaps = 39/222 (17%)
Query: 481 VEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLL 540
L P L+L ++S YP L V + + G RVAI+GP+G+GKSTLL
Sbjct: 320 GSAPAAGAVGLGKPTLELRDLSAGYPGAPPV-LDGVSLDLPPGERVAILGPSGSGKSTLL 378
Query: 541 NLLAGDLSPTEGEV-----------RRSQKLRIGRYSQ--HFVDLLTMEETPVSYLLRLH 587
LAG L P +GEV + + R+ +Q H D T V LRL
Sbjct: 379 ATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFD------TTVRENLRLA 432
Query: 588 ----PDQEGLSKQEAVRAKLGKF--GLPSHNHLTPI----AKLSGGQKARVVFTSISMSK 637
D+E + E V L + LP T + A+LSGG++ R+ ++
Sbjct: 433 RPDATDEELWAALERVG--LADWLRALPDGLD-TVLGEGGARLSGGERQRLALARALLAD 489
Query: 638 PHILLLDEPTNHLDMQS----IDALADALDEFTGGVVLVSHD 675
ILLLDEPT HLD ++ ++ L AL T VVL++H
Sbjct: 490 APILLLDEPTEHLDAETADELLEDLLAALSGRT--VVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 4e-20
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 40/222 (18%)
Query: 495 LLQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
LL++ +S S+P L DV I G + +VG +G+GKSTL + G L PT G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 553 EVR----------RSQKLRIGRYSQH-FVD-------LLTMEET---PVSYLLRLHPDQE 591
+ R + + Q F D +T+ E P+ +L +
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 592 GLSKQEAVRAKLGKFGLPSHNHLT--PIAKLSGGQKARVVFTSISMS---KPHILLLDEP 646
++EAV L GLP L P +LSGGQ+ RV I+ + P +L+ DEP
Sbjct: 121 ---RKEAVLLLLVGVGLPEE-VLNRYP-HELSGGQRQRVA---IARALALNPKLLIADEP 172
Query: 647 TNHLDM----QSIDALADALDEFTGGVVLVSHDSRLISRVCD 684
T+ LD+ Q +D L +E ++ ++HD +++++ D
Sbjct: 173 TSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIAD 214
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 4e-20
Identities = 52/168 (30%), Positives = 72/168 (42%), Gaps = 18/168 (10%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
LQL ++ Y + L V + + G ++GPNGAGK+TL+ +LA P+ G +R
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 556 --------RSQKLR--IGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKL 603
+ QKLR IG Q F T+ E + Y+ L K L
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF-LDYIAWLKGIPSKEVKARVDEV-L 115
Query: 604 GKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
L I LSGG + RV + P IL++DEPT LD
Sbjct: 116 ELVNLGDRAK-KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 4e-20
Identities = 64/203 (31%), Positives = 87/203 (42%), Gaps = 42/203 (20%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKL--R 561
L DV + + G VAI+GPNGAGKSTLL L+G+LSP GEVR +L R
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77
Query: 562 IGRYSQHFV--------DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH 613
QH +++ M P L ++ V A L + L H
Sbjct: 78 RAVLPQHSSLSFPFTVEEVVAMGRAP----HGLSRAED----DALVAAALAQVDLA---H 126
Query: 614 LT--PIAKLSGGQKARV----VFTSISM--SKPHILLLDEPTNHLDMQSIDALADALDEF 665
L +LSGG++ RV V + P LLLDEPT+ LD+ + +
Sbjct: 127 LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186
Query: 666 T----GGVVLVSHDSRLISRVCD 684
V++V HD L +R D
Sbjct: 187 AHERGLAVIVVLHDLNLAARYAD 209
|
Length = 258 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 5e-20
Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 45/221 (20%)
Query: 487 EPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546
P E+ PL++L VS ++ L D+ ++ G AIVGPNGAGK+TLL+LL G+
Sbjct: 23 HPIEINEPLIELKNVSVRRNGKK--ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE 80
Query: 547 LSPTEGEV-----RR-----SQKLR--IGRYS----QHFVDLLTMEETPVS--------Y 582
P+ G+V R +LR IG S + F T+ + +S Y
Sbjct: 81 HPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIY 140
Query: 583 LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLT--PIAKLSGGQKARVVFTSISMSKPHI 640
L + A + L G HL P LS G++ RV+ + P +
Sbjct: 141 QEDLTAED-----LAAAQWLLELLGA---KHLADRPFGSLSQGEQRRVLIARALVKDPEL 192
Query: 641 LLLDEPTNHLD-------MQSIDALADALDEFTGGVVLVSH 674
L+LDEP LD + ++ LA + ++ V+H
Sbjct: 193 LILDEPAQGLDLIAREQLLNRLEELAASPGAPA--LLFVTH 231
|
Length = 257 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 6e-20
Identities = 67/207 (32%), Positives = 100/207 (48%), Gaps = 27/207 (13%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV- 554
++ I V+ +YPN L +++ I G V +VGP+GAGKSTLL L+ + PT G +
Sbjct: 1 IEFINVTKTYPN-GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 555 -----------RRSQKLR--IGRYSQHFVDL--LTMEETPVSYLLRL--HPDQEGLSKQE 597
R LR IG Q F L + E V++ L + P +E ++
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYEN-VAFALEVTGVPPRE---IRK 115
Query: 598 AVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDA 657
V A L GL SH H A+LSGG++ RV ++ P IL+ DEPT +LD +
Sbjct: 116 RVPAALELVGL-SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174
Query: 658 LADALDEFT--GGVVLVS-HDSRLISR 681
+ + L + G V+V+ H L+
Sbjct: 175 IMNLLKKINKAGTTVVVATHAKELVDT 201
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 6e-20
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 32/242 (13%)
Query: 166 ITIDN----FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221
IT D F + + + S + G+ GL+GPNG GK+T L++LA
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLA--------- 52
Query: 222 IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKL 281
+ D A +E + R + + +ST + D A E L
Sbjct: 53 -------GLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLY------DRLTARENL 99
Query: 282 AELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
E + L L D A+ ++ LG +E+ R FS G R ++++ARAL P +
Sbjct: 100 -EYFAGLYGLKGDELTARLEELADRLGM-EELLDRRVGGFSTGMRQKVAIARALVHDPPV 157
Query: 342 LLLDEPTNHLDLRAVLWLEEY---LCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398
LLLDEPT LD+ A L E+ L K ++ +H + +C ++ LH ++ Y
Sbjct: 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV-Y 216
Query: 399 RG 400
G
Sbjct: 217 EG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 7e-20
Identities = 66/251 (26%), Positives = 104/251 (41%), Gaps = 54/251 (21%)
Query: 164 KDITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221
+I +N F +L+ S+ I G++ +VG +G GKSTLLKLL P
Sbjct: 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529
Query: 222 IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEV-ASLQNST----SVDGEEDGDDAND 276
I + G D + I +L LR +V LQ+ S+ + +
Sbjct: 530 I-------LLDGVDLNDI--------DLASLRRQVGYVLQDPFLFSGSIR---ENIALGN 571
Query: 277 AGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM-QGRPTK------SFSGGWRMRI 329
E+ E Q+ G+ F + + G T + SGG R R+
Sbjct: 572 PEATDEEIIEAAQLAGAHE-------------FIENLPMGYDTPVGEGGANLSGGQRQRL 618
Query: 330 SLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVC 384
+LARAL +P +LLLDE T+ LD +L + L + +T+++++H R
Sbjct: 619 ALARALLSKPKILLLDEATSALDPETEAIIL---QNLLQILQGRTVIIIAH-RLSTIRSA 674
Query: 385 TEIIHLHDQKL 395
II L K+
Sbjct: 675 DRIIVLDQGKI 685
|
Length = 709 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 9e-20
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 52/215 (24%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L + VSFSYP +E L ++ + + G ++A++G +G+GKSTLL LL GDL P +GE+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI- 59
Query: 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL- 614
T++ PVS L ++ LS +V L +L
Sbjct: 60 ------------------TLDGVPVSDL------EKALSSLISV--------LNQRPYLF 87
Query: 615 -TPI-----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDALADALDE 664
T + + SGG++ R+ I + I+LLDEPT LD Q + + + L +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD 147
Query: 665 FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
T ++ ++H I + +I +ENG +
Sbjct: 148 KT--LIWITHHLTGIEHM------DKILFLENGKI 174
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 9e-20
Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 38/245 (15%)
Query: 486 PEPTELTPPLLQLIEVSFSYPNREDFK---------LSDVDVGIDMGTRVAIVGPNGAGK 536
PLL + +S Y +R+ + DV + G + +VG +G+GK
Sbjct: 271 RRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGK 330
Query: 537 STLLNLLAGDLSPTEGEVRRSQK-----------LRIGRYS--QH-FVDL---LTMEETP 579
STL +LAG L P+ G + + LR Q + L +T+ +
Sbjct: 331 STLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI- 389
Query: 580 VSYLLRLHPDQEGLSKQEAVRAKLGKFGLP-SHNHLTPIAKLSGGQKARVVFTSISMSKP 638
++ LR+H G ++ V L GLP P +LSGGQ+ RV +P
Sbjct: 390 LAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALALEP 448
Query: 639 HILLLDEPTNHLD----MQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVV 694
+L+LDEP + LD Q ++ L D +E + +SHD ++ + D + V+
Sbjct: 449 KLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADR-----VAVM 503
Query: 695 ENGTV 699
+G +
Sbjct: 504 YDGRI 508
|
Length = 539 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-19
Identities = 54/180 (30%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKLRIG 563
+ ++ G + + GPNG GK+TLL +LAG L P GEVR R + R
Sbjct: 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI 75
Query: 564 RYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKL 620
Y H L L+ E + + +H Q + L GL L P A+L
Sbjct: 76 LYLGHLPGLKPELSALEN-LHFWAAIHGGA-----QRTIEDALAAVGLTGFEDL-PAAQL 128
Query: 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSR 677
S GQ+ R+ + +S+ + +LDEPT LD + LA L G V+L +H
Sbjct: 129 SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-19
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 287 KLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDE 346
++ I G D A+ ++ +G+ ++ SGG R R++LARAL + P LLLLDE
Sbjct: 55 EILIDGKDIAKLPLEELRRRIGYVPQL--------SGGQRQRVALARALLLNPDLLLLDE 106
Query: 347 PTNHLDLRAVLWLEEY---LCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQK 394
PT+ LD + L E L +T+++V+HD + +I L D K
Sbjct: 107 PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 3e-19
Identities = 81/235 (34%), Positives = 113/235 (48%), Gaps = 44/235 (18%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
VSF YP+R D L + + I G VA+VG +G GKST+++LL PT GE+
Sbjct: 6 VSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGV 65
Query: 555 ---------RRSQKLRIGRYSQHFVDLL--TMEETPVSYLLRLHPDQEGLSKQEAVR-AK 602
RSQ IG SQ V L T+ E + Y PD +EA + A
Sbjct: 66 DIRDLNLRWLRSQ---IGLVSQEPV-LFDGTIAEN-IRYGK---PDATDEEVEEAAKKAN 117
Query: 603 LGKF--GLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
+ F LP + T + ++LSGGQK R+ + P ILLLDE T+ LD +S
Sbjct: 118 IHDFIMSLP-DGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176
Query: 657 ALADALDEFTGG--VVLVSHDSRLIS-RVCDDEERSEIWVVENGTVSRFPGTFEE 708
+ +ALD G ++++H RL + R D I V++NG V GT +E
Sbjct: 177 LVQEALDRAMKGRTTIVIAH--RLSTIRNAD-----LIAVLQNGQVVE-QGTHDE 223
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 4e-19
Identities = 42/126 (33%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 537 STLLNLLAGDLSPTEGEV------------RRSQKLRIGRYSQHFVDL--LTMEETPVSY 582
STLL L+ G L PT G + R+ + RIG Q LT+ E
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 583 LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642
L D L + GLP P+ LSGGQK RV + KP +LL
Sbjct: 61 LRDKEADAR-------AEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLL 113
Query: 643 LDEPTN 648
LDEPT
Sbjct: 114 LDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 6e-19
Identities = 78/289 (26%), Positives = 113/289 (39%), Gaps = 62/289 (21%)
Query: 123 AAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDA-DANVKDITIDNFSVAARGK-EL 180
A +HA A +A V+ + L G+ A + SVA G+
Sbjct: 282 AQYHARADGVAAA----EALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPA 337
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
L+ S + G+R LVGP+G GKSTLL LL + A+
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLL---------------GFVDPTEGSIAVN 382
Query: 241 AVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAE---LYEKLQILGSDAA 296
V A + R+++A + Q+ G +AE L + A
Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFLFAG------------TIAENIRLARP----DASDA 426
Query: 297 EAQASKILAGL-GFTKEM-QGRPTK------SFSGGWRMRISLARALFVQPTLLLLDEPT 348
E + + AGL F + QG T SGG R++LARA LLLLDEPT
Sbjct: 427 EIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486
Query: 349 NHLD-------LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390
HLD L A+ L + +T+++V+H R L + I+ L
Sbjct: 487 AHLDAETEAEVLEALRALAQ-----GRTVLLVTH-RLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 6e-19
Identities = 69/234 (29%), Positives = 97/234 (41%), Gaps = 32/234 (13%)
Query: 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
+ + S +A G+ ++ V G GL+GPNG GKSTLL+LLA
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLA------------ 48
Query: 225 LLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAEL 284
G R V A +L L + + + E+D D A +
Sbjct: 49 --------GALRPDAGTVDLAGVDLHGLSRRARARRVALV---EQDSDTAVPLTVRDVVA 97
Query: 285 -----YEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
+ L S A + LA + + R + SGG R R+ +ARAL +P
Sbjct: 98 LGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEP 156
Query: 340 TLLLLDEPTNHLDLRA---VLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390
LLLLDEPTNHLD+RA L L L T+V HD + + C ++ L
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVL 210
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-18
Identities = 73/252 (28%), Positives = 110/252 (43%), Gaps = 43/252 (17%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I +N S K L+ S ++ G G++GPNG GKSTL +++ ++ P
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-------- 374
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDG-DDANDAGEKLAEL 284
D I+ E VKL VD D D E+++
Sbjct: 375 ---------DSGTIKI-----GETVKL----------AYVDQSRDALDPNKTVWEEISGG 410
Query: 285 YEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344
+ +Q+ E + + F Q + SGG R R+ LA+ L +LLL
Sbjct: 411 LDIIQLGK---REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467
Query: 345 DEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLH-DQKLHFYRG 400
DEPTN LD LRA LEE L + VV+SHDR FL+ + T I+ D + ++ G
Sbjct: 468 DEPTNDLDVETLRA---LEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEG 524
Query: 401 NFDDFESGYEQR 412
N+ ++E ++R
Sbjct: 525 NYSEYEEDKKRR 536
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 40/231 (17%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DL---SPT 550
++L +++ Y ++ K D+ + I G A++GP+G GKSTLL LL DL +P
Sbjct: 1 IELRDLNVYYGDKHALK--DISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 551 EGEV-----------------RRSQKLRIGRYSQH-FVDLLTMEETPVSYLLRLHPDQEG 592
EGEV RR R+G Q ++ + V+Y LRLH +
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRR----RVGMVFQKPNPFPGSIYDN-VAYGLRLHGIKLK 113
Query: 593 LSKQEAVRAKLGKFGLPS--HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHL 650
E V L K L + L LSGGQ+ R+ ++P +LLLDEPT+ L
Sbjct: 114 EELDERVEEALRKAALWDEVKDRLHA-LGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
Query: 651 DMQSIDALADALDEFTG--GVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
D S + + + E +V+V+H+ + +RV D + NG +
Sbjct: 173 DPISTAKIEELIAELKKEYTIVIVTHNMQQAARVAD-----RTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 1e-18
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 40/225 (17%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA--WRKIP-VPKNI 222
I + + +V K LK S+ I G+ L+GP+G GKSTLL+LL IP P
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKL 281
+VLL +++ D ++++LR V + Q G
Sbjct: 61 EVLLDGKDIYDLD-----------VDVLELRRRVGMVFQKPNPFPGS------------- 96
Query: 282 AELYE------KLQ-ILGSDAAEAQASKILAGLGFTKEMQGRPT-KSFSGGWRMRISLAR 333
+Y+ +L I + + + + L E++ R SGG + R+ LAR
Sbjct: 97 --IYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLAR 154
Query: 334 ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
AL +P +LLLDEPT+ LD + +EE + KK T+V+V+H+
Sbjct: 155 ALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 52/250 (20%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTL----LKLLAWRKIPVPKN 221
I ++N +V+ + +L+ S+ + G+ L+GPNG GKSTL L LL P +
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK------PSS 58
Query: 222 IDVLLVEQEVVGDDRSAIQAVVSAHEEL-----VKLREEVASLQNSTSVDGEEDGDDAND 276
++ + + V + V + + +++ V
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLG----------------- 101
Query: 277 AGEKLAELYEKLQILG--SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARA 334
Y K + + + + L +G ++++ R SGG + R+ LARA
Sbjct: 102 -------RYGKKGWFRRLNKKDKEKVDEALERVG-MEDLRDRQIGELSGGQKQRVLLARA 153
Query: 335 LFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK---KTLVVVSHDRDFLNTV---CTEII 388
L P LLLLDEP +D+ + + L + KT+++V+HD L V +I
Sbjct: 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD---LGLVMAYFDRVI 210
Query: 389 HLHDQKLHFY 398
L+ + L
Sbjct: 211 CLN-RHLIAS 219
|
Length = 254 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 33/199 (16%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----LRIGRYSQH 568
L V + + G +AI+GPNGAGKSTLL L+G+LSP GEV + ++H
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 569 FVDLLTMEETPVSY--------LLRLHPDQEGLSKQEAVR------AKLGKFGLPSHNHL 614
L + + +++ + P + G +E R A GL ++
Sbjct: 77 RAVLP--QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR 134
Query: 615 TPIAKLSGGQKARVVFTSI------SMSKPHILLLDEPTNHLDM---QSIDALADALDEF 665
T LSGG++ RV + + L LDEPT+ LD+ LA L
Sbjct: 135 T----LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE 190
Query: 666 TGGVVLVSHDSRLISRVCD 684
G V+ V HD L ++ D
Sbjct: 191 GGAVLAVLHDLNLAAQYAD 209
|
Length = 259 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 4e-18
Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
V+F YP L D+ + I G VA+VGP+G+GKSTL+NL+ G +
Sbjct: 6 VTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD 65
Query: 556 ---------RSQKLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKL 603
R Q IG SQ F D T+ E ++Y +E A A
Sbjct: 66 VRDYTLASLRRQ---IGLVSQDVFLFND--TVAEN-IAYGRPGATREEVEEAARAANAHE 119
Query: 604 GKFGLPSHNHLTPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA 659
LP T I KLSGGQ+ R+ + P IL+LDE T+ LD +S +
Sbjct: 120 FIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 660 DALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
AL+ +++H RL S + E I V+E+G +
Sbjct: 179 AALERLMKNRTTFVIAH--RL-STI---ENADRIVVLEDGKI 214
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 50/217 (23%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------------RSQKL 560
L + + ++ G V I+GP+G+GKSTLL L G P G + +
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 561 RIGRYSQHFVDL---LT-ME---ETPVSYLLRLHPDQEGLSKQEA-VRAK--LGKFGLPS 610
++G Q F +L LT +E PV LSK EA +A L K GL
Sbjct: 78 KVGMVFQQF-NLFPHLTVLENVTLAPVKVK--------KLSKAEAREKALELLEKVGLAD 128
Query: 611 HNHLTPIAKLSGGQKARVVFT-SISMSKPHILLLDEPTNHLD-------MQSIDALADAL 662
P A+LSGGQ+ RV +++M P ++L DEPT+ LD + + LA+
Sbjct: 129 KADAYP-AQLSGGQQQRVAIARALAM-DPKVMLFDEPTSALDPELVGEVLDVMKDLAE-- 184
Query: 663 DEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ T +++V+H+ V D + ++ G +
Sbjct: 185 EGMT--MIIVTHEMGFAREVAD-----RVIFMDQGKI 214
|
Length = 240 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-18
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 23/189 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-------RSQKLRIGRY 565
L D+ ++ G ++GPNGAGK+T + ++ G + P GEV + + RIG
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 566 SQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNHLTPIAK 619
+ + + +++ + YL +L GL K+EA + L + L S + +
Sbjct: 76 PEERGLYPKMKVIDQ--LVYLAQLK----GLKKEEARRRIDEWLERLEL-SEYANKRVEE 128
Query: 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSHDS 676
LS G + +V F + + P +L+LDEP + LD +++ L D + E V+L +H
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188
Query: 677 RLISRVCDD 685
L+ +CD
Sbjct: 189 ELVEELCDR 197
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 4e-18
Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 23/192 (11%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------------RSQKL 560
L D+++ I+ G V + GP+G+GK+TLL L+ G S EG ++ +L
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 561 R--IGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP 616
R IG Q + LT + V L L P+ +E RA L GL H P
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQN-VQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS----IDALADALDEFTGGVVLV 672
LSGGQK RV + +P ++L DEPT LD +S ++ + E +++V
Sbjct: 140 -HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIV 198
Query: 673 SHDSRLISRVCD 684
+HD+R I V D
Sbjct: 199 THDNR-ILDVAD 209
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 4e-18
Identities = 57/177 (32%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
+SF Y R L DV + G VA++GPNGAGKSTL +LL EG++
Sbjct: 7 LSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD 64
Query: 556 -RSQKLRIGR-----YSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGK 605
R + Q +DL L++ + LR H GLS+ EA + L +
Sbjct: 65 LRRAPRAALARLGVVFQQPTLDLDLSVRQN-----LRYHAALHGLSRAEARARIAELLAR 119
Query: 606 FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 662
GL + +L+GG + RV + +P +LLLDEPT LD S A+ +
Sbjct: 120 LGLAERAD-DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV 175
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 5e-18
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 27/222 (12%)
Query: 499 IEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-- 555
I ++ F L D+ + I G VA++GP+GAGKSTLL ++AG +P G +R
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 556 ----------RSQKLRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEA-VRAK 602
+ ++G QH+ +T+ + +++ L++ ++ ++ A V
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADN-IAFGLKVRKERPSEAEIRARVEEL 121
Query: 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI----DAL 658
L L P A+LSGGQ+ RV +P +LLLDEP LD + L
Sbjct: 122 LRLVQLEGLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 180
Query: 659 ADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700
D V V+HD + D + V+ G +
Sbjct: 181 RKLHDRLGVTTVFVTHDQEEALELAD-----RVVVLNQGRIE 217
|
Length = 345 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 8e-18
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 47/194 (24%)
Query: 496 LQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
L+L ++ + K L V + + G A++G NGAGKSTL+ +L+G P GE+
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 555 RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL 614
++ VS+ S ++A RA +
Sbjct: 58 L-------------------VDGKEVSF----------ASPRDARRAGIA---------- 78
Query: 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG---GVVL 671
+ +LS G++ V +L+LDEPT L ++ L + V+
Sbjct: 79 -MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF 137
Query: 672 VSHDSRLISRVCDD 685
+SH + + D
Sbjct: 138 ISHRLDEVFEIADR 151
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 9e-18
Identities = 80/251 (31%), Positives = 120/251 (47%), Gaps = 34/251 (13%)
Query: 485 FPEPTELTPPLLQ-LIE---VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTL 539
P L P L+ LIE VSFSYPNR D L + + G VA+VGP+G+GKST+
Sbjct: 464 IPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTV 523
Query: 540 LNLLAGDLSPTEGEVRRSQKLRIGRYSQHF----VDLLTMEETPV----------SYLLR 585
LL PT G+V + +Y H+ V L+ E PV +Y L
Sbjct: 524 AALLQNLYQPTGGQVLLDGV-PLVQYDHHYLHRQVALVGQE--PVLFSGSVRENIAYGLT 580
Query: 586 LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAK----LSGGQKARVVFTSISMSKPHIL 641
PD+E ++ +A A P + + T + + LSGGQK R+ + KP +L
Sbjct: 581 DTPDEEIMAAAKAANAHDFIMEFP-NGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL 639
Query: 642 LLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701
+LDE T+ LD + L ++ + V+L++H + R D +I V++ G+V
Sbjct: 640 ILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER-AD-----QILVLKKGSVVE 693
Query: 702 FPGTFEEYKED 712
GT ++ ED
Sbjct: 694 M-GTHKQLMED 703
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 9e-18
Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 37/225 (16%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L L +V FSY + D+ + G VAI+GP+GAGKSTLLNL+AG +P GE+
Sbjct: 2 LALDDVRFSY-GHLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 556 RSQKLRIGRY-SQHFVDLLTMEETPVSYL-------LRLHPDQEGL----SKQEAVRAKL 603
+ ++ V +L E ++L L L P GL ++E V A
Sbjct: 58 INGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP---GLKLNAEQREKVEAAA 114
Query: 604 GKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDALA 659
+ GL P +LSGGQ+ RV + + ILLLDEP + LD + + ++
Sbjct: 115 AQVGLAGFLKRLP-GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVS 173
Query: 660 DALDEFTGGVVLVSHD----SRLISRVCDDEERSEIWVVENGTVS 700
DE +++V+H +R+ RV ++NG ++
Sbjct: 174 QLCDERKMTLLMVTHHPEDAARIADRVV---------FLDNGRIA 209
|
Length = 231 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-17
Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 41/238 (17%)
Query: 167 TIDNFSVA-ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I+N S + +G E+L S+ + G+ L G NG GK+TL K+LA
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILA------------- 47
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS----LQNSTSVDGEEDGDDANDAGEKL 281
G + + + + + +K +E S +Q+ +
Sbjct: 48 -------GLIKES-SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDS---------VR 90
Query: 282 AELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
EL L+ L DA QA +L L + P S SGG + R+++A AL L
Sbjct: 91 EELLLGLKEL--DAGNEQAETVLKDLDLYALKERHPL-SLSGGQKQRLAIAAALLSGKDL 147
Query: 342 LLLDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396
L+ DEPT+ LD + V L L K ++V++HD +FL VC ++ L + +
Sbjct: 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-17
Identities = 52/174 (29%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKLRIG 563
S + + G + + GPNG+GK+TLL +LAG P G V R R
Sbjct: 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL 75
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGG 623
Y H + T + + L H D E V L + GL P+A+LS G
Sbjct: 76 LYLGHAPGIKTT-LSVLENLRFWHADHS----DEQVEEALARVGLNGFEDR-PVAQLSAG 129
Query: 624 QKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSH 674
Q+ RV + +S + +LDEPT LD + A+A+ VVL +H
Sbjct: 130 QQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-17
Identities = 64/206 (31%), Positives = 87/206 (42%), Gaps = 59/206 (28%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP--TEGEVR---RSQKLRIGRYSQ 567
L +V G AI+GP+GAGKSTLLN LAG + GEV R R R
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84
Query: 568 HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR--AKLGKFGLPSHNHLTPIAKLSGGQK 625
+V ++ LHP L+ +E + AKL LSGG++
Sbjct: 85 GYV----PQDD------ILHPT---LTVRETLMFAAKL--------------RGLSGGER 117
Query: 626 ARVVFTSISM---SKPHILLLDEPTNHLD-------MQSIDALADALDEFTGGVVLVS-H 674
RV SI++ S P +L LDEPT+ LD M + LAD TG ++ S H
Sbjct: 118 KRV---SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-----TGRTIICSIH 169
Query: 675 DSR-LISRVCDDEERSEIWVVENGTV 699
I + D + ++ G V
Sbjct: 170 QPSSEIFELFDK-----LLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-17
Identities = 72/251 (28%), Positives = 108/251 (43%), Gaps = 60/251 (23%)
Query: 491 LTPPLLQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548
+ PLL++ ++ + + DV ++ G + IVG +G+GKSTL L G L
Sbjct: 1 MMSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60
Query: 549 P----TEGEV------------RRSQKLRIGRYSQHFVDLLT-----------MEETPVS 581
T GEV R +KLR R + F D +T + E
Sbjct: 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE---- 116
Query: 582 YLLRLHPDQEGLSKQEA-VRAK--LGKFGLP---SHNHLTPIAKLSGGQKARVVFTSISM 635
LRLH S+ EA RA L + GLP + LSGG + RV+ I+M
Sbjct: 117 -ALRLH---GKGSRAEARKRAVELLEQVGLPDPERRDRYPHQ--LSGGMRQRVM---IAM 167
Query: 636 ---SKPHILLLDEPTNHLDM----QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEER 688
KP +L+ DEPT LD+ Q +D L D E V+ ++HD +++ + D
Sbjct: 168 ALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELAD---- 223
Query: 689 SEIWVVENGTV 699
+ V+ G +
Sbjct: 224 -RVVVMYKGEI 233
|
Length = 539 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 46/219 (21%)
Query: 494 PLLQLIEVSFSYPNREDFK-------LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546
PLL++ + +P + F + V I G + +VG +G GKSTL L+ G
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 547 LSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF 606
PT GE+ + I + L+ EE ++E V L K
Sbjct: 63 EEPTSGEILF-EGKDITK--------LSKEE-----------------RRERVLELLEKV 96
Query: 607 GLPSHNHLT--PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDALAD 660
GLP L P +LSGGQ+ R+ P +++ DEP + LD Q ++ L D
Sbjct: 97 GLPE-EFLYRYPH-ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKD 154
Query: 661 ALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+E + +SHD ++ + D I V+ G +
Sbjct: 155 LQEELGLTYLFISHDLSVVRYISD-----RIAVMYLGKI 188
|
Length = 268 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 22/205 (10%)
Query: 498 LIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV--- 554
L +S + ++ D+++ I+ G AI+G +G+GKSTLLN++ G+V
Sbjct: 1 LKNISKKFGDKVILD--DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 555 ---------RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK--- 602
+++ K R + F + +E V L L + LSK+E K
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA 118
Query: 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 662
L K GL I +LSGG++ RV + P ++L DEPT LD ++ D + D L
Sbjct: 119 LEKVGLNLKLK-QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 663 DEFTGG---VVLVSHDSRLISRVCD 684
E +++V+HD +++ D
Sbjct: 178 LELNDEGKTIIIVTHDP-EVAKQAD 201
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 72/224 (32%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 501 VSFSYPN-REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK 559
VS +YP RE L DV I G V + GP+GAGKSTLL L+ G+ PT G++ +
Sbjct: 7 VSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGH 64
Query: 560 ------------LR--IGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEA---VR 600
LR IG Q F + T+ E V+ LR+ G +E V
Sbjct: 65 DLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYEN-VALPLRV----IGKPPREIRRRVS 119
Query: 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD 660
L GL P +LSGG++ RV +++P +LL DEPT +LD +
Sbjct: 120 EVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR 178
Query: 661 ALDEF--TGGVVLV-SHDSRLISRVCDDEERSEIWVVENGTVSR 701
+E G VL+ +HD L++R+ R + +E+G + R
Sbjct: 179 LFEEINRLGTTVLMATHDLELVNRM-----RHRVLALEDGRLVR 217
|
Length = 223 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 3e-17
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 15/222 (6%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
E+LK S++ + G ++G +G GKST L+ + + + P +I V +V D
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG- 77
Query: 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEA 298
Q V+ +L LR + T V + E + E +Q+LG EA
Sbjct: 78 -QLKVADKNQLRLLRTRL------TMVFQHFNLWSHMTVLENVME--APIQVLGLSKQEA 128
Query: 299 Q--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD---L 353
+ A K LA +G + QG+ SGG + R+S+ARAL ++P +LL DEPT+ LD +
Sbjct: 129 RERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
Query: 354 RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
VL + + L KT+VVV+H+ F V + +I LH K+
Sbjct: 189 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230
|
Length = 257 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 508 REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV--------RRSQK 559
E L+ + + I G V ++G NGAGKSTLLN +AGDL PT G++ ++S
Sbjct: 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVA 76
Query: 560 LRIGRYSQHFVDL-------LTMEETPVSYLLR-----LHPDQEGLSKQEAVRAKLGKFG 607
R ++ F D LT+EE R L ++ + R +L + G
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSS-ALNERRRSSFRERLARLG 135
Query: 608 LPSHNHL-TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665
L N L I LSGGQ+ + ++ P ILLLDE T LD ++ + + + +
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKI 194
|
Length = 263 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 4e-17
Identities = 60/212 (28%), Positives = 90/212 (42%), Gaps = 35/212 (16%)
Query: 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-------------- 555
DF L +D ++ I G +GAGKSTLL +AG P G +
Sbjct: 12 DFTL-KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 556 -RSQKLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH 611
Q+ +IG Q F L E +++ L+ ++E + +V L GL H
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVREN--LAFGLKRKRNRE---DRISVDELLDLLGL-DH 123
Query: 612 NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDALADALDEFTG 667
A+LSGG+K RV ++P +LLLDEP + LD +Q + L
Sbjct: 124 LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183
Query: 668 GVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
V+ V+HD + D I V+E+G +
Sbjct: 184 PVIFVTHDLSEAEYLADR-----IVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-17
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
K +L S+ + G+ YG +GPNG GK+T +K++ + + + + + +
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL---IKPDSGEITFDGKSYQKNI 68
Query: 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAA 296
A++ + + L E N T E+ L ++LG
Sbjct: 69 EALRRIGA-------LIEAPGFYPNLT---AREN-------------LRLLARLLGIRKK 105
Query: 297 EAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAV 356
++L +G K+ + K FS G + R+ +A AL P LL+LDEPTN LD +
Sbjct: 106 RID--EVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGI 162
Query: 357 LWLEEYLCRWKK---TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
L E + + T+++ SH + V I ++ KL
Sbjct: 163 KELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 5e-17
Identities = 68/244 (27%), Positives = 105/244 (43%), Gaps = 37/244 (15%)
Query: 502 SFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
F + + + D+ I G V +G NGAGKST L +L G L PT G+VR
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 556 ---------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF 606
RS L +G+ Q + DL ++ V L+ PD E +L
Sbjct: 88 PFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDE-------FAERLDFL 140
Query: 607 G--LPSHNHL-TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALD 663
L L P+ KLS GQ+ R + + P +L LDEPT LD+ + + + L
Sbjct: 141 TEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLK 200
Query: 664 EFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQ--REI 717
E+ V+L +H I+ +CD + +++ G + F GT + +E +E
Sbjct: 201 EYNEERQATVLLTTHIFDDIATLCD-----RVLLIDQGQLV-FDGTLAQLQEQFGPYKEF 254
Query: 718 KAEV 721
E+
Sbjct: 255 SVEL 258
|
Length = 325 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 6e-17
Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 28/199 (14%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L+L V S+ + E K DV++ I+ G V ++GP+G GKSTLL ++AG PT GE+
Sbjct: 4 LELKNVRKSFGSFEVLK--DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 556 ---------RSQKLRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQE---AVRA 601
+K I Q++ +T+ E +++ L+L G+ K E V+
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN-IAFGLKL----RGVPKAEIDKRVKE 116
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARV-VFTSISMSKPHILLLDEPTNHLDMQS----ID 656
GL + P +LSGGQ+ RV + ++ + KP + LLDEP ++LD +
Sbjct: 117 VAKLLGLEHLLNRKP-LQLSGGQRQRVALARAL-VRKPKVFLLDEPLSNLDAKLRVLMRS 174
Query: 657 ALADALDEFTGGVVLVSHD 675
+ + + V+HD
Sbjct: 175 EIKKLHERLGTTTIYVTHD 193
|
Length = 338 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 6e-17
Identities = 73/253 (28%), Positives = 105/253 (41%), Gaps = 57/253 (22%)
Query: 480 SVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTL 539
V F L L VSF+YP++ L + + I G +VA++G G GKSTL
Sbjct: 323 EVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTL 382
Query: 540 LNLLAGDLSPTEGEVRRSQK---------LR--IGRYSQHFVDLL--TMEETPVSYLLRL 586
L LL P +GE+ + + LR I SQ V L T+ + LL
Sbjct: 383 LQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQR-VHLFSATLRDN----LLLA 437
Query: 587 HPD-----------QEGLSK----QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFT 631
P+ Q GL K + + A LG+ G LSGG++ R+
Sbjct: 438 APNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQ----------LSGGEQRRLGIA 487
Query: 632 SISMSKPHILLLDEPTNHLDM---QSIDALADALDEFTGG--VVLVSHDSRLISRVCDDE 686
+ +LLLDEPT LD + I L L E V++++H RL E
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAETERQILEL---LAEHAQNKTVLMITH--RLTGL----E 538
Query: 687 ERSEIWVVENGTV 699
+ I V++NG +
Sbjct: 539 QFDRICVMDNGQI 551
|
Length = 574 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 7e-17
Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 27/194 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------------RSQKL 560
L+ V++ + G +A++G +G+GKSTLL +LAG + GEV KL
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 561 R---IGRYSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL 614
R +G Q F+ L +E + LLR ++ S+ A A L + GL
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQ--SRNGAK-ALLEQLGLGKRLDH 142
Query: 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTGGVV 670
P A+LSGG++ RV +P +L DEPT +LD Q+ D +AD L E ++
Sbjct: 143 LP-AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLI 201
Query: 671 LVSHDSRLISRVCD 684
LV+HD +L +R CD
Sbjct: 202 LVTHDLQLAAR-CD 214
|
Length = 228 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 7e-17
Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 46/228 (20%)
Query: 488 PTELTPPLLQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546
T TPPLL+L +S S+ K L V + + G A++G NGAGKSTL+ +L+G
Sbjct: 1 MTMSTPPLLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV 57
Query: 547 LSPTEGEV------------RRSQKLRIGRYSQHF--VDLLT------MEETPVSYLLRL 586
P GE+ R + I Q V L+ + P +
Sbjct: 58 YPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLI 117
Query: 587 HPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQK-----ARVVFTSISMSKPHIL 641
D++ + + R L + GL T + LS Q+ AR + +L
Sbjct: 118 --DRKAM--RRRARELLARLGLDIDPD-TLVGDLSIAQRQMVEIARAL-----SFDARVL 167
Query: 642 LLDEPTNHLDMQSIDALADALDEF--TG-GVVLVSHDSRL--ISRVCD 684
+LDEPT L ++ + L D + G ++ +SH RL + + D
Sbjct: 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH--RLDEVFEIAD 213
|
Length = 500 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 8e-17
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 205 STLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASL-QNST 263
STLLKL+ + P + +LL ++ G + LR+ + + Q+
Sbjct: 1 STLLKLIT--GLLQPTSGTILLDGEDGTGLSSRKL------------LRKRIGVVFQDPQ 46
Query: 264 SVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323
E L A+A+A + L +G + P + SG
Sbjct: 47 LFPEL-------TVRENLFFGLRD------KEADARAEEALERVGLPDFLDREPVGTLSG 93
Query: 324 GWRMRISLARALFVQPTLLLLDEPTN 349
G + R+++ARAL +P LLLLDEPT
Sbjct: 94 GQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 8e-17
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQKLRIGRYSQHFVDLLTM 575
D+ ++ G RVAI+GP+GAGKSTLLNL+AG L+P G + Q S+ V +L
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 576 EETPVSYL-------LRLHPDQEGL----SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQ 624
E S+L L L+P GL +++E + A + G+ P +LSGGQ
Sbjct: 79 ENNLFSHLTVAQNIGLGLNP---GLKLNAAQREKLHAIARQMGIEDLLARLP-GQLSGGQ 134
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLD 651
+ RV + + ILLLDEP + LD
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 9e-17
Identities = 66/245 (26%), Positives = 103/245 (42%), Gaps = 46/245 (18%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I I+N L S+ I G+ L+GP+G GKSTLL+++A + P I
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI--- 59
Query: 226 LVEQEVVGD-DRSAIQA----VVSAHEELVK---LREEVA---SLQNSTSVDGEEDGDDA 274
+ V+ D A++ V H L + + +A ++ + E
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR---- 115
Query: 275 NDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARA 334
++ EL +Q L GL Q SGG R R++LARA
Sbjct: 116 ----ARVEELLRLVQ--------------LEGLADRYPAQ------LSGGQRQRVALARA 151
Query: 335 LFVQPTLLLLDEPTNHLD--LRAVL--WLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390
L V+P +LLLDEP LD +R L WL + R T V V+HD++ + ++ L
Sbjct: 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVL 211
Query: 391 HDQKL 395
+ ++
Sbjct: 212 NQGRI 216
|
Length = 345 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 1e-16
Identities = 67/240 (27%), Positives = 101/240 (42%), Gaps = 42/240 (17%)
Query: 166 ITIDNFSVA-ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
I N S A G L S+ I G+ L GP+G GK+TLLKLL P +
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV-- 59
Query: 225 LLVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS-------LQNSTSVDGEEDGDDANDA 277
+ G+D + ++ +L LR + L + T + N A
Sbjct: 60 -----RIAGEDVNRLR-----GRQLPLLRRRIGVVFQDFRLLPDRTVYE--------NVA 101
Query: 278 GEKLAELYEKLQILGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL 335
L L++ G E Q L +G + P + SGG + R+++ARA+
Sbjct: 102 ---LP-----LEVRGKKEREIQRRVGAALRQVGLEHKADAFP-EQLSGGEQQRVAIARAI 152
Query: 336 FVQPTLLLLDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392
P LLL DEPT +LD +L L + L + T++V +HD ++ V +I L D
Sbjct: 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 36/223 (16%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I + N SV GK++L S +++ G+ + +VGPNG GK+TLL LL P ++ +L
Sbjct: 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLL 91
Query: 226 LVE---QEVVGDDRSAIQAVVSA-HEEL---VKLREEVAS-LQNSTSVDGEEDGDDANDA 277
E + + R I V S HE +R+ V S S + E+
Sbjct: 92 GRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQED-------- 143
Query: 278 GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337
A + A++ L L K + RP S S G + R+ +ARAL
Sbjct: 144 ---------------LTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK 188
Query: 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRW-----KKTLVVVSH 375
P LL+LDEP LDL A L L L+ V+H
Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-16
Identities = 64/200 (32%), Positives = 94/200 (47%), Gaps = 25/200 (12%)
Query: 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRY-SQHFVDLLTM 575
D+ + G VAI+GP+GAGKSTLLNL+AG + P G ++ + + G Q V +L
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 576 EETPVSYL-------LRLHPDQEGLS----KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQ 624
E ++L L LHP GL +QE V + G+ + P +LSGGQ
Sbjct: 78 ENNLFAHLTVRQNIGLGLHP---GLKLNAEQQEKVVDAAQQVGIADYLDRLP-EQLSGGQ 133
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALADAL-DEFTGGVVLVSHDSRLIS 680
+ RV + ILLLDEP + LD + + AL L E +++V+H
Sbjct: 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193
Query: 681 RVCDDEERSEIWVVENGTVS 700
+ +I VV G +
Sbjct: 194 AIAS-----QIAVVSQGKIK 208
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 1e-16
Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 49/243 (20%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I I N + +LK + + G+ ++GP+G GKSTLL+ + + P I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI--- 57
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVA-------------SLQNSTSVDGEEDGD 272
+++ + DD+ I +LR++V L+N T
Sbjct: 58 IIDGLKLTDDKKNIN----------ELRQKVGMVFQQFNLFPHLTVLENIT--------- 98
Query: 273 DANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLA 332
LA + K++ + AE +A ++L +G + P SGG + R+++A
Sbjct: 99 --------LAPI--KVKGMSKAEAEERALELLEKVGLADKADAYP-AQLSGGQQQRVAIA 147
Query: 333 RALFVQPTLLLLDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIH 389
RAL + P ++L DEPT+ LD + VL + + L T+VVV+H+ F V +I
Sbjct: 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIF 207
Query: 390 LHD 392
+ D
Sbjct: 208 MDD 210
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 1e-16
Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 25/199 (12%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
+L + +S SY + L DV + I G V ++GP+G GK+TLLNL+AG ++P+ G
Sbjct: 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 554 VRRSQKLRIGRYSQHFVDL--------LTMEETPVSYLLRLHPDQEGLSK-QEAVRAK-- 602
++ + + G ++ V L + + V++ L+L G+ K Q A
Sbjct: 62 IQLNGRRIEGPGAERGVVFQNEALLPWLNVIDN-VAFGLQL----RGIEKAQRREIAHQM 116
Query: 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD------MQSID 656
L GL H I +LSGG + RV +P +LLLDEP LD MQ +
Sbjct: 117 LALVGLEGAEHKY-IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL- 174
Query: 657 ALADALDEFTGGVVLVSHD 675
L D E V+L++HD
Sbjct: 175 -LLDLWQETGKQVLLITHD 192
|
Length = 259 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 28/193 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---------RRSQKLR-- 561
L + I+ G V +GPNGAGK+T L +L+G L PT GEV RR + LR
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRI 96
Query: 562 ---IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-LPSHNHL--T 615
G+ +Q + DL PV L L + +L + L L T
Sbjct: 97 GVVFGQKTQLWWDL------PVIDSFYLLAAIYDLPPARF-KKRLDELSELLDLEELLDT 149
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVL 671
P+ +LS GQ+ R + + +P IL LDEPT LD+ + + + + L E+ V+L
Sbjct: 150 PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLL 209
Query: 672 VSHDSRLISRVCD 684
SH + I +
Sbjct: 210 TSHYMKDIEALAR 222
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-16
Identities = 54/187 (28%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIG 563
L D+ + + G +GPNGAGK+T + ++ G + P GE+ K RIG
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 564 RY--SQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLS 621
+ F LT E LRL G+ K+ L GL + S
Sbjct: 76 ALIEAPGFYPNLTAREN-----LRLLARLLGIRKKRIDEV-LDVVGLKDSAKK-KVKGFS 128
Query: 622 GGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD---ALDEFTGGVVLVSHDSRL 678
G K R+ + P +L+LDEPTN LD I L + +L + V++ SH
Sbjct: 129 LGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE 188
Query: 679 ISRVCDD 685
I +V D
Sbjct: 189 IQKVADR 195
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-16
Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 25/201 (12%)
Query: 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
P L++ VS S+ + + D+ + I G V ++GP+G GK+TLL ++AG P+ G
Sbjct: 3 KPALEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 553 EVR---------RSQKLRIGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAVR 600
E+ +K IG Q + L +T+EE V++ L++ + + V
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVFQSYA-LFPHMTVEEN-VAFGLKVRKKLKKAEIKARVE 118
Query: 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD------MQS 654
L GL P +LSGGQ+ RV + +P +LLLDEP + LD M+
Sbjct: 119 EALELVGLEGFADRKP-HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR- 176
Query: 655 IDALADALDEFTGGVVLVSHD 675
L + E V V+HD
Sbjct: 177 -KELKELQRELGITFVYVTHD 196
|
Length = 352 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-16
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 24/197 (12%)
Query: 476 WRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNG 533
WR+ V + + +L + K L +V G +A++G +G
Sbjct: 5 WRNSDVFGRVAQDGSWKQLVSRLRGC---FCRERPRKHLLKNVSGVAKPGELLAVMGSSG 61
Query: 534 AGKSTLLNLLAG------DLSPT---EGEVRRSQKLR-IGRYSQH---FVDLLTMEET-P 579
AGK+TL+N LA S + G ++++R I Y Q F+ LT+ E
Sbjct: 62 AGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM 121
Query: 580 VSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL---TP--IAKLSGGQKARVVFTSIS 634
LR+ K+E V L GL + P + LSGG++ R+ F S
Sbjct: 122 FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181
Query: 635 MSKPHILLLDEPTNHLD 651
++ P +L DEPT+ LD
Sbjct: 182 LTDPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 60/195 (30%), Positives = 78/195 (40%), Gaps = 37/195 (18%)
Query: 513 LSDVDVG---------IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-------- 555
L+DV V + G + +VGPNGAGKSTLL +AG L P G ++
Sbjct: 3 LNDVAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEA 61
Query: 556 ---RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLH-PDQEGLSKQEAVRAKL-GKFGLPS 610
SQ M PV L LH PD+ + ++ GL
Sbjct: 62 WSAAELARHRAYLSQQQTPPFAM---PVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD 118
Query: 611 HNHLTPIAKLSGGQKARV----VFTSISMS-KPH--ILLLDEPTNHLDMQSIDALADALD 663
+ +LSGG+ RV V + P +LLLDEP N LD+ AL L
Sbjct: 119 KLG-RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
Query: 664 EFT---GGVVLVSHD 675
E VV+ SHD
Sbjct: 178 ELCQQGIAVVMSSHD 192
|
Length = 248 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 5e-16
Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 51/214 (23%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLT 574
D+ G AIVGP+G+GKSTLLNL+AG +P G V + VD+
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-----------LINGVDVTA 64
Query: 575 ME--ETPVSYL-----------------------LRLHPDQEGLSKQEAVRAKLGKFGLP 609
+ PVS L L+L + ++A+ L + GL
Sbjct: 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAED-----RQAIEVALARVGLA 119
Query: 610 SHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDALADALDEF 665
P +LSGG++ RV + + +LLLDEP LD + +D + D E
Sbjct: 120 GLEKRLP-GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET 178
Query: 666 TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
V++V+H R+ + ++NG +
Sbjct: 179 KMTVLMVTHQPEDAKRLAQ-----RVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 5e-16
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT---EGEVRRSQKLRIGRYSQH- 568
L++V+ I G V ++GP+G GKSTLL+ + G L+ GE+ +++ R+
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ-RLDMLPAAQ 76
Query: 569 ------FVDLLTMEETPV--SYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKL 620
F D L V + L L +G +++ A A L + GL H P A L
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-ATL 135
Query: 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDM----QSIDALADALDEFTGGVVLVSHDS 676
SGGQ+ARV +++P LLLDEP + LD+ Q + + V V+HD
Sbjct: 136 SGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195
|
Length = 213 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 6e-16
Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 40/248 (16%)
Query: 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV--- 218
VK++++ F + L S I G+ GLVG +G GKSTL + + P
Sbjct: 3 EVKNLSVS-FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 219 --PKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDAND 276
D+L + + + R IQ V ++ ++SL ++
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMV---------FQDPMSSLNPRMTI----------- 101
Query: 277 AGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL 335
GE++AE L +A + +L G+G +E+ R SGG R R+++ARAL
Sbjct: 102 -GEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160
Query: 336 FVQPTLLLLDEPTNHLDL---RAVLWL-----EEYLCRWKKTLVVVSHDRDFLNTVCTEI 387
+ P LL+ DEPT+ LD+ +L L EE TL+ ++HD + + +
Sbjct: 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL----GLTLLFITHDLGVVAKIADRV 216
Query: 388 IHLHDQKL 395
++ K+
Sbjct: 217 AVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 7e-16
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK---K 368
+ R SGG + R++LA+AL P LL+LDEPT+ LD + E L K K
Sbjct: 87 NLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGK 146
Query: 369 TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
T+++ SH + +C + L++ ++
Sbjct: 147 TILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 7e-16
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 27/211 (12%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
+ + ++ G+ +G +GPNG GK+T +++L P ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-------------------TSGT 49
Query: 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
A V+ ++ +V+ E ++ S + + D + G + E+ +L L D AE +A
Sbjct: 50 ARVAGYD-VVR---EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA 105
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLW 358
++L E RP ++SGG R R+ +A +L QP +L LDEPT LD R +W
Sbjct: 106 EELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164
Query: 359 -LEEYLCRWKKTLVVVSHDRDFLNTVCTEII 388
L T+++ +H + + +C I
Sbjct: 165 DYIRALKEEGVTILLTTHYMEEADKLCDRIA 195
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 8e-16
Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 25/158 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-----------RRSQKLR 561
L +D+ + G V I+GP+G+GKSTLL + P G + + +LR
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 562 --IGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAV---RAKLGKFGLPSHNH 613
+G Q F +L LT+ E +++ G+SK EA L K GL
Sbjct: 76 QKVGMVFQQF-NLFPHLTVLENITLAPIKVK----GMSKAEAEERALELLEKVGLADKAD 130
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
P A+LSGGQ+ RV P ++L DEPT+ LD
Sbjct: 131 AYP-AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-15
Identities = 64/249 (25%), Positives = 96/249 (38%), Gaps = 63/249 (25%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL 560
VSF + V + G + IVG +G+GKS L + G L +
Sbjct: 9 VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVG---- 64
Query: 561 RIGRYSQHFVDLLTMEET----------------PVSYL-------------LRLHPDQE 591
G DLL++ E P++ L LRLH +
Sbjct: 65 --GEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--GK 120
Query: 592 GLSKQEA---VRAKLGKFGLP-------SHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641
GLSK+EA L G+P S+ H +LSGG + RV+ P +L
Sbjct: 121 GLSKKEAKERAIELLELVGIPDPERRLKSYPH-----ELSGGMRQRVMIAMALALNPKLL 175
Query: 642 LLDEPTNHLDM----QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEER----SEIWV 693
+ DEPT LD+ Q +D L + E ++L++HD +++ + D R +
Sbjct: 176 IADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD---RVAVMYAGRI 232
Query: 694 VENGTVSRF 702
VE G V
Sbjct: 233 VEEGPVEEI 241
|
Length = 316 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 59/202 (29%), Positives = 85/202 (42%), Gaps = 20/202 (9%)
Query: 486 PEPTELTPPL---LQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLN 541
P L PL ++ +V+F+YP R D L +++ + G VA+VGP+GAGKSTL
Sbjct: 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQ 384
Query: 542 LLAGDLSPTEGEVR---------RSQKLR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQ 590
LL P G + +LR + Q V + Y D+
Sbjct: 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDE 444
Query: 591 EGLSKQEAVRAKLGKFGLPSHNHLTPIAK----LSGGQKARVVFTSISMSKPHILLLDEP 646
E + A A LP T + + LSGGQ+ R+ + ILLLDE
Sbjct: 445 EVEAAARAAHAHEFISALPEGYD-TYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEA 503
Query: 647 TNHLDMQSIDALADALDEFTGG 668
T+ LD +S + AL+ G
Sbjct: 504 TSALDAESEQLVQQALETLMKG 525
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 2e-15
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK----KTLV 371
RP SGG R R+ LARAL +P +LLLDEPT+HLD+ + L E L R KT+V
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFY 398
+V HD + +I L D ++
Sbjct: 153 MVLHDLNLAARYADRVILLKDGRIVAQ 179
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 24/179 (13%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+L++ +S YPN L ++++ I+ G VAI+GP+GAGKSTLL + + P+ G +
Sbjct: 1 MLEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 555 R--------------RSQKLRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGL----S 594
R + RIG QH+ ++ LT+ E + L P L S
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 595 KQEAVRAK--LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
+++ RA L + GL + +LSGGQ+ RV +P ++L DEP LD
Sbjct: 120 EEDKERALSALERVGL-ADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-15
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 28/213 (13%)
Query: 494 PLLQLIEVSFSYP--NREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
LLQ + Y + + L +V I G +AIVG +G+GKSTLL+LL G +PT
Sbjct: 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63
Query: 552 GEV-----------------RRSQKLR-IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL 593
G+V R+QKL I ++ D +E + L+ E
Sbjct: 64 GDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEI- 122
Query: 594 SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
L GL + P ++LSGG++ RV ++ P ++L DEPT +LD +
Sbjct: 123 --NSRALEMLAAVGLEHRANHRP-SELSGGERQRVAIARALVNNPRLVLADEPTGNLDAR 179
Query: 654 SIDALADALDEFT----GGVVLVSHDSRLISRV 682
+ D++ L E ++V+HD +L R+
Sbjct: 180 NADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212
|
Length = 233 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-15
Identities = 65/212 (30%), Positives = 94/212 (44%), Gaps = 41/212 (19%)
Query: 494 PLLQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
LL+L ++ SYP+ E+ L + + I G VAIVG +G+GKSTL+N+L PT
Sbjct: 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 552 GEVRRS------------QKLR-------IGRYSQHFVDLLTME---ETPVSYLLRLHPD 589
G R + +LR RY H + LT E P Y
Sbjct: 63 GTYRVAGQDVATLDADALAQLRREHFGFIFQRY--HLLSHLTAAQNVEVPAVY------- 113
Query: 590 QEGLSK---QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646
GL + + L + GL P ++LSGGQ+ RV M+ ++L DEP
Sbjct: 114 -AGLERKQRLLRAQELLQRLGLEDRVEYQP-SQLSGGQQQRVSIARALMNGGQVILADEP 171
Query: 647 TNHLDMQS---IDALADALDEFTGGVVLVSHD 675
T LD S + A+ L + V++V+HD
Sbjct: 172 TGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203
|
Length = 648 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-15
Identities = 63/191 (32%), Positives = 88/191 (46%), Gaps = 25/191 (13%)
Query: 469 LPEAPKKWRDYSVEF--HFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVG-IDMGTR 525
LPE + R +EF P L++ +++ DF L +V+ G I G
Sbjct: 312 LPEENMRIRPEPIEFEERPPRDESERETLVEYPDLTKKLG---DFSL-EVEGGEIYEGEV 367
Query: 526 VAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLR 585
+ IVGPNG GK+T LLAG L P EGEV +L+I Q+ + + V LLR
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEV--DPELKISYKPQY---IKPDYDGTVEDLLR 422
Query: 586 LHPDQEGLS--KQEAVRAKLGKFGLPSHNHL--TPIAKLSGGQKARVVFTSISMSKP-HI 640
D G S K E ++ L L + LSGG+ RV + +S+ +
Sbjct: 423 SITDDLGSSYYKSEIIK----PLQL---ERLLDKNVKDLSGGELQRVA-IAACLSRDADL 474
Query: 641 LLLDEPTNHLD 651
LLDEP+ HLD
Sbjct: 475 YLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-15
Identities = 63/203 (31%), Positives = 89/203 (43%), Gaps = 25/203 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKLRIG 563
L DV++ + G+ VA++GP+G+GKSTLL ++AG P G +R ++ +IG
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 564 RYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKL 620
QH F L + +R HP + + V L L P +L
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAK---IKARVEELLELVQLEGLGDRYP-NQL 131
Query: 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTGGVVLVSHDS 676
SGGQ+ RV +P +LLLDEP LD + L L DE V V+HD
Sbjct: 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191
Query: 677 RLISRVCDDEERSEIWVVENGTV 699
V D I V+ NG +
Sbjct: 192 EEAMEVAD-----RIVVMSNGKI 209
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 3e-15
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 50/243 (20%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I I N S + KE+LK S+ + G+ ++GP+G GKSTLL+ L + P +I
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI--- 59
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVA-------------SLQNSTSVDGEEDGD 272
V+ E VGD ++++KLR +V L+N T
Sbjct: 60 TVDGEDVGDK-----------KDILKLRRKVGMVFQQFNLFPHLTVLENVT--------- 99
Query: 273 DANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLA 332
LA + K++ L A +A ++L +G + P SGG + R+++A
Sbjct: 100 --------LAPV--KVKKLSKAEAREKALELLEKVGLADKADAYP-AQLSGGQQQRVAIA 148
Query: 333 RALFVQPTLLLLDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIH 389
RAL + P ++L DEPT+ LD + VL + + L T+++V+H+ F V +I
Sbjct: 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIF 208
Query: 390 LHD 392
+
Sbjct: 209 MDQ 211
|
Length = 240 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 70/219 (31%), Positives = 105/219 (47%), Gaps = 31/219 (14%)
Query: 524 TRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV--RRSQ--KLRIGRYSQHFVDLL------ 573
+R+A++GPNGAGKSTL G L PT G V R K I R + FV L+
Sbjct: 31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI-REVRKFVGLVFQNPDD 89
Query: 574 -----TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628
T+E+ + L D+E ++ + V + L GL P LSGG+K RV
Sbjct: 90 QIFSPTVEQDIAFGPINLGLDEETVAHR--VSSALHMLGLEELRDRVP-HHLSGGEKKRV 146
Query: 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGG--VVLVSHDSRLISRVCD 684
+ +P +L+LDEPT LD Q + L D L++ T G V+ +H L+ + D
Sbjct: 147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMAD 206
Query: 685 DEERSEIWVVENGTVSRFPGTFEEY--KEDLQREIKAEV 721
I+V++ G + + GT EE + DL + ++
Sbjct: 207 -----YIYVMDKGRIVAY-GTVEEIFLQPDLLARVHLDL 239
|
Length = 277 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-15
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+L++ +++ SY ++ + DV + G ++G NGAGK+TLL ++A L P G+V
Sbjct: 1 MLEVTDLTKSYGSKVQ-AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 555 --------RRSQKLR----IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR-- 600
R +R + + LT E + Y RL+ GLS++E
Sbjct: 60 TIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAREN-LKYFARLN----GLSRKEIKARI 114
Query: 601 AKLGK-FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA 659
A+L K L + + + S G K +V + P IL+LDEPT+ LD+++
Sbjct: 115 AELSKRLQLLEYLD-RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 660 D---ALDEFTGGVVLVSHDSRLISRVCD 684
D L V+ SH + + +CD
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCD 201
|
Length = 245 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 33/180 (18%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG- 552
++++ +SF YP+ + L DV + G VAIVG NG+GKSTL LL G L P G
Sbjct: 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 553 --------------EVRRSQKLRIGRYSQH----FVDLLTMEETPVSYLLRLHPDQEGLS 594
+VRR ++G Q+ FV + V++ L + G+
Sbjct: 64 ITVGGMVLSEETVWDVRR----QVGMVFQNPDNQFVG--ATVQDDVAFGL----ENIGVP 113
Query: 595 KQEAVR---AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
++E V L + G+ + P +LSGGQK RV + +P I++LDE T+ LD
Sbjct: 114 REEMVERVDQALRQVGMEDFLNREP-HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLD 172
|
Length = 279 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 3e-15
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 487 EPTELTPPLLQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545
EP PPLL ++FS R + +D +D G + + G NGAGK+TLL +LAG
Sbjct: 3 EPLHTAPPLLAAHALAFS---RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59
Query: 546 DLSPTEGEV-------RRSQKLRIGRYSQHF----VDLLTMEETPVSYLLRLHPDQEGLS 594
L G++ R + R Y H DL T+E + +L LH G
Sbjct: 60 LLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLEN--LHFLCGLH----GRR 113
Query: 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 654
++ + L GL + T + +LS GQK R+ + +S + LLDEP +LD++
Sbjct: 114 AKQMPGSALAIVGLAGYED-TLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEG 172
Query: 655 IDALADALDEF--TGGVVLVS 673
I + + GG LV+
Sbjct: 173 ITLVNRMISAHLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-15
Identities = 71/346 (20%), Positives = 124/346 (35%), Gaps = 65/346 (18%)
Query: 123 AAHHAEQAKKEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLK 182
A E K + + GS ++ + V+DI+ +
Sbjct: 2 AMIMVENLSKNYPVAIKEPG--LKGSLNHFFHRKERSIEAVQDISFE------------- 46
Query: 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242
I G+ G +G NG GKST LK+L +P + V
Sbjct: 47 -----IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN----------------- 84
Query: 243 VSAHEELVKLREEVASLQNSTSVDGEEDG----DDANDAGEKLAELYEKLQILGSDAAEA 298
R L++ V G++ A D+ E L +YE + D
Sbjct: 85 -----GKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYE----IPDDEFAE 135
Query: 299 QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA--- 355
+ + L ++ P + S G RMR LA AL P +L LDEPT LD+ A
Sbjct: 136 RLDFLTEILDLEGFLK-WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194
Query: 356 VL-WLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGY----- 409
+ +L+EY + T+++ +H D + T+C ++ + +L + G + +
Sbjct: 195 IREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL-VFDGTLAQLQEQFGPYKE 253
Query: 410 ---EQRRKEMNKKFEIYEK-QVKAAKRSGNRVQQEKVKDRAKSAAA 451
E ++ + + + ++ N V +E+ D A
Sbjct: 254 FSVELKQAKSLSQLALLGDVTIEEGLNIKNDVSREESADIIAKLLA 299
|
Length = 325 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-15
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 27/214 (12%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
++ S G+ GL+G NG GK+TLL+++A IP D
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP----------------DSGKVTI 61
Query: 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
V + +R ++ V E G A + + + +L L +A+
Sbjct: 62 DGVDTVRDPSFVRRKI-------GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARI 114
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLE 360
+++ L + + R + FS G + ++++ARAL P++L+LDEPT+ LD+R
Sbjct: 115 AELSKRLQLLEYLDRRVGE-FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 361 EYLCRWK---KTLVVVSHDRDFLNTVCTEIIHLH 391
+++ + K + ++ SH + +C +I LH
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLH 207
|
Length = 245 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 39/229 (17%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
++ + VS SY + L DV + I G +I+GPNGAGKSTLL++++ L GE+
Sbjct: 1 MITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 555 -------------RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQ--EAV 599
++KL I + H LT+ + V + R Q L+K+ +
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDL-VGFG-RFPYSQGRLTKEDRRII 116
Query: 600 RAKLGKFGLPSHNHLTPIA-----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM-- 652
+ HL ++ +LSGGQ+ R + +LLDEP N+LDM
Sbjct: 117 NEAIEYL------HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 653 --QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
Q + L DE +V+V HD S D I ++NG V
Sbjct: 171 SVQIMKILRRLADELGKTIVVVLHDINFASCYSD-----HIVALKNGKV 214
|
Length = 252 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 6e-15
Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 24/201 (11%)
Query: 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------ 555
F + + V + G ++GPNGAGK+T L +LAG L P G
Sbjct: 10 RFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV 69
Query: 556 ----RSQKLRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGK-FGL 608
+ R+G S D LT E + Y L+ GL E A+L +
Sbjct: 70 VKEPAEARRRLGFVSDSTGLYDRLTAREN-LEYFAGLY----GLKGDEL-TARLEELADR 123
Query: 609 PSHNHL--TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT 666
L + S G + +V + P +LLLDEPT LD+ + AL + + +
Sbjct: 124 LGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183
Query: 667 GG---VVLVSHDSRLISRVCD 684
++ +H + + R+CD
Sbjct: 184 ALGKCILFSTHIMQEVERLCD 204
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 6e-15
Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Query: 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVRRSQKLRIGRYSQH 568
LS+++ + G R+ I G +GAGK++LL LAG L P G RI +
Sbjct: 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG-LWPWGSG--------RISMPADS 456
Query: 569 FVDLLTMEETPVSYL----LR---LHPDQEGLSKQEAVRAKLGKFGLPS-----HNHLTP 616
LL + + P YL LR +P+ + A L K GL
Sbjct: 457 --ALLFLPQRP--YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRW 512
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE--FTGGVVLVSH 674
LSGG++ R+ F + + KP + LDE T+ LD ++ D L L E V+ V H
Sbjct: 513 DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572
Query: 675 DSRLIS 680
L +
Sbjct: 573 RPTLWN 578
|
Length = 604 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 6e-15
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 36/196 (18%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----RRSQKLRIGRYSQ- 567
L V + I G VAIVG +G+GKSTLL+LL G +PT GEV + KL ++
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80
Query: 568 ---------HFVDLLT----MEETPVSYLLRLHPDQEGLSKQEAVRAK---LGKFGLPSH 611
F LL +E + L+ S +EA L K GL H
Sbjct: 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIG------KKSVKEAKERAYEMLEKVGL-EH 133
Query: 612 --NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG-- 667
NH ++LSGG++ RV +++P ++L DEPT +LD + + D + E
Sbjct: 134 RINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191
Query: 668 --GVVLVSHDSRLISR 681
++V+HD L +
Sbjct: 192 NTSFLVVTHDLELAKK 207
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 6e-15
Identities = 76/210 (36%), Positives = 97/210 (46%), Gaps = 38/210 (18%)
Query: 486 PEPTELTP--PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL 543
L PLL L VS Y R L+ +D+ I G VA+VG +G GKSTLL LL
Sbjct: 2 MNTARLNQGTPLL-LNAVSKRYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLL 58
Query: 544 AGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYL-LRLHP-----DQEGLS--- 594
AG +P+ GE L G E+T + + RL P D GL
Sbjct: 59 AGLETPSAGE------LLAGTAPLAEA----REDTRLMFQDARLLPWKKVIDNVGLGLKG 108
Query: 595 --KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD- 651
+ A++A L GL + P A LSGGQK RV + +P +LLLDEP LD
Sbjct: 109 QWRDAALQA-LAAVGLADRANEWP-AALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166
Query: 652 -----MQS-IDALADALDEFTGGVVLVSHD 675
MQ I++L FT V+LV+HD
Sbjct: 167 LTRIEMQDLIESLWQQ-HGFT--VLLVTHD 193
|
Length = 257 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 7e-15
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 27/207 (13%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
G E+LK + G+ L+G NG GKSTLL L + P++ VL+ + + +
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLN--GLLRPQSGAVLIDGEPLDYSRK 61
Query: 237 SAIQAVVSAHEELVKLREEVAS-LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDA 295
L++ R+ V Q+ +D A D + +A + L + S+A
Sbjct: 62 G-----------LLERRQRVGLVFQDP------DDQLFAADVDQDVA--FGPLNLGLSEA 102
Query: 296 -AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
E + + L +G + ++ RPT SGG + R+++A A+ ++P +LLLDEPT LD
Sbjct: 103 EVERRVREALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161
Query: 355 AVLWLEEYLCRWK---KTLVVVSHDRD 378
+ L R + T+V+ +HD D
Sbjct: 162 GREQMLAILRRLRAEGMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 7e-15
Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 48/236 (20%)
Query: 158 DADANVKDITIDNFSVAAR---GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214
+ T++ ++A +L S+ + G+R ++GP+G GKSTLL LA
Sbjct: 325 AGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLA-G 383
Query: 215 KIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDA 274
+ + EV D V + + A L ++T
Sbjct: 384 LLDPLQG--------EVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTT----------- 424
Query: 275 NDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT----------KSFSGG 324
+ E L++ DA + + L +G ++ P SGG
Sbjct: 425 ---------VRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGG 475
Query: 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK----KTLVVVSHD 376
R R++LARAL +LLLDEPT HLD L E L +T+V+++H
Sbjct: 476 ERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 8e-15
Identities = 80/238 (33%), Positives = 110/238 (46%), Gaps = 48/238 (20%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSPTEG 552
L+ I F R L++V + I G ++G +GAGKSTL+ NLL PT G
Sbjct: 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE---RPTSG 60
Query: 553 EVR--------------RSQKLRIGRYSQHFVDLL---TMEETPVSYLLRLHPDQEGLSK 595
V R + +IG QHF +LL T+ + V+ L L G K
Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQHF-NLLSSRTVFDN-VALPLEL----AGTPK 114
Query: 596 QEAVRAK----LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
E ++A+ L GL P A+LSGGQK RV S P +LL DE T+ LD
Sbjct: 115 AE-IKARVTELLELVGLSDKADRYP-AQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 652 ---MQSI-DALADALDEFTGGVVLVSHDSRLISRVCD-----DEERSEIWVVENGTVS 700
+SI + L D E +VL++H+ ++ R+CD D R +VE GTVS
Sbjct: 173 PATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR----LVEQGTVS 226
|
Length = 343 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 8e-15
Identities = 65/213 (30%), Positives = 92/213 (43%), Gaps = 34/213 (15%)
Query: 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556
L VSF P R L + + G ++G NG+GKSTLL +L P+EGE+
Sbjct: 13 ALRNVSFRVPGRT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 557 SQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV-------RAKLGKFGLP 609
+ S+ F V+YL + P EG++ +E V LG+FG
Sbjct: 71 DAQPLESWSSKAFA-------RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA 123
Query: 610 SHNH---------LTPIAK-----LSGGQKARVVFTSISMSKPHILLLDEPTNHLDM-QS 654
L P+A LSGG++ R + LLLDEPT+ LD+
Sbjct: 124 DREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183
Query: 655 IDALA--DALDEFTG-GVVLVSHDSRLISRVCD 684
+D LA L + G V+ V HD + +R CD
Sbjct: 184 VDVLALVHRLSQERGLTVIAVLHDINMAARYCD 216
|
Length = 265 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 9e-15
Identities = 69/247 (27%), Positives = 106/247 (42%), Gaps = 44/247 (17%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I +N S + G+ LL S+ + G+ ++GPNG GKSTLLK L+ P + +
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSV-------DGEEDGDDANDAG 278
G ++ EEL + R A L ++S+ + + G + +G
Sbjct: 62 -------GVPLNSWPP-----EELARHR---AVLPQNSSLAFPFTVQEVVQMGRIPHRSG 106
Query: 279 EKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL--- 335
E E +I AA+A A+ L+GL GR ++ SGG + R+ LAR L
Sbjct: 107 ---REPEEDERI----AAQALAATDLSGL------AGRDYRTLSGGEQQRVQLARVLAQL 153
Query: 336 ---FVQPTLLLLDEPTNHLDLR---AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIH 389
L LDEPT+ LD+ L L L R ++ V HD + I+
Sbjct: 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVL 213
Query: 390 LHDQKLH 396
LH ++
Sbjct: 214 LHQGRVI 220
|
Length = 259 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 64/203 (31%), Positives = 94/203 (46%), Gaps = 26/203 (12%)
Query: 496 LQLIEVSFSYPNREDFK---LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
+ L VS++Y F+ L DV++ I+ G+ A +G G+GKST++ LL G PT+G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 553 EVR---------------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQE 597
VR + + ++G Q F + EET V + P G+S++E
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQ-FPESQLFEET-VLKDVAFGPQNFGVSQEE 120
Query: 598 AV---RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 654
A R KL G+ +LSGGQ RV I +P IL+LDEPT LD +
Sbjct: 121 AEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180
Query: 655 IDALADALDEFTGG---VVLVSH 674
L + +VLV+H
Sbjct: 181 RKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-14
Identities = 64/225 (28%), Positives = 94/225 (41%), Gaps = 43/225 (19%)
Query: 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
+I+++N S GK L ++ I G+ LVG +G GKSTLL LL P I
Sbjct: 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379
Query: 224 VLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLA 282
V + D S R++++ + QN G
Sbjct: 380 V----NGIDLRDLSPEA-----------WRKQISWVSQNPYLFAGT-------------- 410
Query: 283 ELYEKLQILGSDAAEAQASKIL--AGLG-FTKEMQGRPT------KSFSGGWRMRISLAR 333
+ E + + DA++ + L AGL F + G T SGG R++LAR
Sbjct: 411 -IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469
Query: 334 ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHD 376
AL +LLLLDEPT HLD + + L KT++V++H
Sbjct: 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514
|
Length = 559 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-14
Identities = 64/220 (29%), Positives = 99/220 (45%), Gaps = 24/220 (10%)
Query: 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239
+LK + + G+ +VGP+G GKSTLL +LA + P + +V L+ Q + D A
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA--GLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQ 299
A+ + H V S ++ E+ L +L+ S + A
Sbjct: 83 AALRARHVGFV-----FQSFHLIPNLTALEN-----------VALPLELRGESSADSRAG 126
Query: 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAV 356
A +L +G K + P SGG + R++LARA +P +L DEPT +LD +
Sbjct: 127 AKALLEAVGLGKRLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
Query: 357 LWLEEYLCRWK-KTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
L L R + TLV+V+HD L C + L +L
Sbjct: 186 ADLLFALNRERGTTLVLVTHDPQ-LAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 3e-14
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 287 KLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDE 346
KL+ + A+ ++L +G + P + SGG + R++LARAL +P+LLLLDE
Sbjct: 98 KLRGVPKAEIRARVRELLELVGLEGLLNRYPHE-LSGGQQQRVALARALAREPSLLLLDE 156
Query: 347 PTNHLD--LRAVL--WLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
P + LD LR L L+E T + V+HD++ + I +++ ++
Sbjct: 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 3e-14
Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 27/234 (11%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ ++N + K L S+ + G YGL+GPNG GK+TL+++LA P I +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
+ V ++ + L +E N T + + +A L
Sbjct: 60 GQD---VLKQPQKLRRRIGY------LPQEFGVYPNFTVR----------EFLDYIAWLK 100
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
I + +A+ ++L + + + S SGG R R+ +A+AL P++L++D
Sbjct: 101 G---IPSKE-VKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155
Query: 346 EPTNHLDLRAVLWLEEYLCRWKKTLVVV--SHDRDFLNTVCTEIIHLHDQKLHF 397
EPT LD + L + +V+ +H + + ++C ++ L+ KL F
Sbjct: 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-14
Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 31/218 (14%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV------ 554
V+F YP R+ L + + I+ G VA+VG +G+GKSTL+NL+ P G++
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 555 ---RRSQKLR--IGRYSQH---FVDLLTMEETPVSY-LLRLHPDQEGLSKQEAVRAKLGK 605
LR + SQ F D T+ ++Y E A A+
Sbjct: 396 LADYTLASLRRQVALVSQDVVLFND--TIANN-IAYGRTEQADRAEIERALAAAYAQDFV 452
Query: 606 FGLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661
LP TPI LSGGQ+ R+ + IL+LDE T+ LD +S + A
Sbjct: 453 DKLPLGLD-TPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA 511
Query: 662 LDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENG 697
L+ G ++++H R+ E+ I V+++G
Sbjct: 512 LERLMQGRTTLVIAH------RLSTIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 77/236 (32%), Positives = 108/236 (45%), Gaps = 37/236 (15%)
Query: 500 EVSFSYPNREDFK---LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR- 555
+V Y + F+ L DV+V I G+ VAI+G G+GKSTLL L G L PT G V
Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66
Query: 556 ---------RSQKLR-----IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA--- 598
+++KL+ +G Q F + EET V + P G+S+++A
Sbjct: 67 GERVITAGKKNKKLKPLRKKVGIVFQ-FPEHQLFEET-VEKDICFGPMNFGVSEEDAKQK 124
Query: 599 VRAKLGKFGLPSHNHLT--PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
R + GLP L P LSGGQ RV + +P +L+LDEPT LD +
Sbjct: 125 AREMIELVGLP-EELLARSPFE-LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRK 182
Query: 657 ALADALDEF--TGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
+ + + G VLV+H +R D +I V+ GTV GT E
Sbjct: 183 EMMEMFYKLHKEKGLTTVLVTHSMEDAARYAD-----QIVVMHKGTVFL-QGTPRE 232
|
Length = 290 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-14
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 28/213 (13%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
E ++ S R+ G+ +GL+GPNG GK+T +K+L P A
Sbjct: 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP----------------TSGRA 57
Query: 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEA 298
A E ++R + + SVD E G E L ++ +L +
Sbjct: 58 TVAGHDVVREPREVRRRIGIVFQDLSVDDELTG------WENL-YIHARLYGVPGAERRE 110
Query: 299 QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLW 358
+ ++L +G E R K++SGG R R+ +AR+L +P +L LDEPT LD +
Sbjct: 111 RIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAH 169
Query: 359 LEEYLCRWKK----TLVVVSHDRDFLNTVCTEI 387
+ EY+ + K+ T+++ +H + +C +
Sbjct: 170 VWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 65/235 (27%), Positives = 98/235 (41%), Gaps = 46/235 (19%)
Query: 501 VSFSY-PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---- 555
V+F+Y P R K DV I G +VAIVGP+G+GKST+L LL + G +
Sbjct: 6 VTFAYDPGRPVLK--DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQ 63
Query: 556 --RSQKL-----RIG-------------RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK 595
R L IG Y+ + +E + + +
Sbjct: 64 DIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRF 123
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
+ +G+ GL KLSGG+K RV + P ILLLDE T+ LD +
Sbjct: 124 PDGYDTIVGERGL----------KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173
Query: 656 DALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
+ AL + + G ++++H I D +I V+++G + GT EE
Sbjct: 174 REIQAALRDVSKGRTTIVIAHRLSTIVN-AD-----KIIVLKDGRIVE-RGTHEE 221
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-14
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 7/126 (5%)
Query: 317 PTKSFSGGWRMRISLARALFVQPT-LLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSH 375
P K+ SGG R R+ LAR LF++P+ LL+LDEPTN LD+ + LEE L ++ T+++VSH
Sbjct: 437 PVKALSGGERNRLLLAR-LFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSH 495
Query: 376 DRDFL-NTVCTEIIHLHDQKLHFYRGNFDDF----ESGYEQRRKEMNKKFEIYEKQVKAA 430
DR F+ NTV I + K+ Y G + D ++ + KK E + +
Sbjct: 496 DRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQQQAQYLALKQPAVKKKEEAAAPKAETV 555
Query: 431 KRSGNR 436
KRS +
Sbjct: 556 KRSSKK 561
|
Length = 635 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 4e-14
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 24/184 (13%)
Query: 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------RSQKLRIGRYSQ--HFV- 570
D G + ++GPNGAGK+TLL + G + P +G V+ IG Q F
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAW 62
Query: 571 DL-LTMEETPVSY------LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGG 623
D +++ T +S LR + ++ AVR L + GL + P+ +LSGG
Sbjct: 63 DFPISVAHTVMSGRTGHIGWLR----RPCVADFAAVRDALRRVGL-TELADRPVGELSGG 117
Query: 624 QKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG---GVVLVSHDSRLIS 680
Q+ RV+ ++P +LLLDEP LDM + + L + E G +++ +HD
Sbjct: 118 QRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM 177
Query: 681 RVCD 684
CD
Sbjct: 178 ATCD 181
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 4e-14
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQKLRIGRY-- 565
S + + G + + GPNG+GK+TLL L+AG L P G ++ +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73
Query: 566 SQHFV-------DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA 618
+ H++ LT+ E + + E L A+ A GL HL P
Sbjct: 74 ACHYLGHRNAMKPALTVAEN-LEFWAAFL-GGEELDIAAALEA----VGLAPLAHL-PFG 126
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVS 673
LS GQK RV + +S I +LDEPT LD ++ A+ + GG+V+ +
Sbjct: 127 YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183
|
Length = 207 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 26/214 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---------RRSQKLRIG 563
L DV + I G VA++GP+G+GK+TLL L+AG P G + Q+ +G
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77
Query: 564 RYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQE---AVRAKLGKFGLPSHNHLTPIA 618
QH+ +T+ + V++ LR+ P E + E V L L P A
Sbjct: 78 FVFQHYALFRHMTVFDN-VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-A 135
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTGGVVLVSH 674
+LSGGQ+ RV +P +LLLDEP LD + L L DE V V+H
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTH 195
Query: 675 DSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
D V D + V+ G + + GT +E
Sbjct: 196 DQEEALEVAD-----RVVVMNKGRIEQV-GTPDE 223
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 5e-14
Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 59/233 (25%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQH---- 568
L V + + G VA++G NGAGK+TLL + G L P G +R + I H
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR-DITGLPPHERAR 74
Query: 569 ----FV-------DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGK-FGLPSHNHLTP 616
+V LT+EE L L ++ +A+L + + L P
Sbjct: 75 AGIGYVPEGRRIFPELTVEEN-----LLL---GAYARRRAKRKARLERVYE------LFP 120
Query: 617 IAK---------LSGGQK-----ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 662
K LSGG++ AR + MS+P +LLLDEP+ L + ++ + +A+
Sbjct: 121 RLKERRKQLAGTLSGGEQQMLAIARAL-----MSRPKLLLLDEPSEGLAPKIVEEIFEAI 175
Query: 663 DEF--TG-GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712
E G ++LV ++R + D +V+E G V GT E D
Sbjct: 176 RELRDEGVTILLVEQNARFALEIAD-----RAYVLERGRV-VLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 39/242 (16%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I + + + G+ +LK + + G+ ++GP+G GKSTLL+L+ + P + +VL
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIV--GLLRPDSGEVL 58
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEV------ASLQNSTSVDGEEDGDDANDAGE 279
+ +++ G + EL +LR + +L +S +V E
Sbjct: 59 IDGEDISGLSEA----------ELYRLRRRMGMLFQSGALFDSLTV------------FE 96
Query: 280 KLA-ELYEKLQILGSDAAEAQASKI-LAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337
+A L E ++ + E K+ GL +++ P SGG + R++LARAL +
Sbjct: 97 NVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL--YPA-ELSGGMKKRVALARALAL 153
Query: 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTL----VVVSHDRDFLNTVCTEIIHLHDQ 393
P LLL DEPT LD A +++ + KK L ++V+HD D + I L+D
Sbjct: 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213
Query: 394 KL 395
K+
Sbjct: 214 KI 215
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 9e-14
Identities = 73/253 (28%), Positives = 103/253 (40%), Gaps = 57/253 (22%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ N SV G+ LL S+ + G+ ++GPNG GKSTLL+ L+ ++ P + +V
Sbjct: 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-GELS-PDSGEVR 60
Query: 226 LVEQEVV---GDDRSAIQAVVSAHEEL-----VKLREEVASLQNSTSVDGEEDGDDANDA 277
L + + + + +AV+ H L V EEV ++ G +
Sbjct: 61 LNGRPLADWSPAELARRRAVLPQHSSLSFPFTV---EEVVAM-------GRAPHGLSRAE 110
Query: 278 GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337
+ L L + LA L GR SGG + R+ LAR L
Sbjct: 111 DDALVA--AALAQVD-----------LAHLA------GRDYPQLSGGEQQRVQLARVL-A 150
Query: 338 Q-------PTLLLLDEPTNHLDLR---AVLWLEEYLCRWKKTLV-VVSHDRDFLN---TV 383
Q P LLLDEPT+ LDL VL L L + V VV HD LN
Sbjct: 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD---LNLAARY 207
Query: 384 CTEIIHLHDQKLH 396
I+ LH +L
Sbjct: 208 ADRIVLLHQGRLV 220
|
Length = 258 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 73/272 (26%), Positives = 119/272 (43%), Gaps = 54/272 (19%)
Query: 152 VLEGQDDADANVKDITIDNFSVAARGKEL-LKSTSVRISHGKRYGLVGPNGMGKSTLLKL 210
V + D + I +N S + GK+ LK S I G++ +VGP+G GKSTL+KL
Sbjct: 315 VEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKL 374
Query: 211 LAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA-SLQN----STSV 265
L + D E + G D I L LR+ + Q+ S ++
Sbjct: 375 L-------LRLYDPTSGEILIDGIDIRDIS--------LDSLRKRIGIVSQDPLLFSGTI 419
Query: 266 D-----GEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL--GFTKEMQGRPT 318
G D D E+ E L++ A A + +A L G+ + R
Sbjct: 420 RENIALGRPDATDE--------EIEEALKL-------ANAHEFIANLPDGYDTIVGERG- 463
Query: 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSH 375
+ SGG R R+++ARAL P +L+LDE T+ LD + + L + +T ++++H
Sbjct: 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAH 522
Query: 376 DRDFLNTV--CTEIIHLHDQKLHFYRGNFDDF 405
L+T+ II L + ++ RG ++
Sbjct: 523 R---LSTIKNADRIIVLDNGRI-VERGTHEEL 550
|
Length = 567 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 510 DFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE--------VRRSQKL 560
DFK + V+ + G +GPNGAGK+T + +L L PT G VR +K+
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKV 64
Query: 561 R-----IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA-VRAK--LGKFGLPSHN 612
R + +Y+ DL E L + GL K EA RA+ L F L
Sbjct: 65 RRSIGIVPQYASVDEDLTGREN------LEMMGRLYGLPKDEAEERAEELLELFEL-GEA 117
Query: 613 HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---V 669
P+ SGG + R+ + + +P +L LDEPT LD ++ A+ D + +
Sbjct: 118 ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177
Query: 670 VLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713
+L +H ++CD I ++++G + GT EE K L
Sbjct: 178 LLTTHYMEEADKLCD-----RIAIIDHGRIIAE-GTPEELKRRL 215
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 64/251 (25%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+L++ E++++Y + L +++ I G AI+G NGAGKSTL L G L P+ G +
Sbjct: 5 ILKVEELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 555 RRSQKLRIGRYSQHFVDLLTMEETPVSY----LLRLH---------PDQEGLSK------ 595
K P+ Y L++L PD + S
Sbjct: 64 LFDGK-------------------PIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDV 104
Query: 596 --------------QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641
++ V L + G+ H P LS GQK RV + + +P +L
Sbjct: 105 SFGAVNLKLPEDEVRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163
Query: 642 LLDEPTNHLDMQSIDALADALDEFTGG----VVLVSHDSRLISRVCDDEERSEIWVVENG 697
+LDEPT LD + + L E +++ +HD ++ CD+ ++V++ G
Sbjct: 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDN-----VFVMKEG 218
Query: 698 TVSRFPGTFEE 708
V G +E
Sbjct: 219 RVI-LQGNPKE 228
|
Length = 283 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-13
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
LL+L +V + + + L+++ + + G +AI GP+G GKSTLL ++A +SPT G
Sbjct: 2 MLLELKQVGYLAGDAK--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT 59
Query: 554 VRRSQKLRIGRYSQHFVDLLTMEETPVSYLL------------------RLHPDQEGLSK 595
+ + S + + VSY ++ +
Sbjct: 60 LLFEGE----DVSTLKPEAYRQQ---VSYCAQTPALFGDTVEDNLIFPWQIRNRR---PD 109
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
+ A L +F LP I +LSGG+K R+ P ILLLDE T+ LD +
Sbjct: 110 RAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
Query: 656 DALADALDEFTG----GVVLVSHD 675
+ + + + V+ ++HD
Sbjct: 170 RNIEEMIHRYVREQNVAVLWITHD 193
|
Length = 223 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 51/241 (21%)
Query: 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKL-RIG-- 563
V++ + V+++GPNGAGK+T+ N L G PT G + ++ R+G
Sbjct: 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83
Query: 564 RYSQH---FVDLLTMEETPVSYLLRLHPDQEGL------------SKQEAV-RAK--LGK 605
R QH F ++ +E V+ +L + GL ++ EA+ RA L +
Sbjct: 84 RTFQHVRLFREMTVIENLLVAQHQQL---KTGLFSGLLKTPAFRRAESEALDRAATWLER 140
Query: 606 FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ---SIDALADAL 662
GL H + L+ GQ+ R+ +++P IL+LDEP L+ + +D L L
Sbjct: 141 VGLLEHAN-RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAEL 199
Query: 663 -DEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP---GTFEEYKEDLQREIK 718
+E V+L+ HD +L+ + D I+VV GT P GT EE + + IK
Sbjct: 200 RNEHNVTVLLIEHDMKLVMGISD-----RIYVVNQGT----PLANGTPEEIRNN-PDVIK 249
Query: 719 A 719
A
Sbjct: 250 A 250
|
Length = 255 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 33/213 (15%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
PLLQL V + + + L+++ + G I GP+G GKSTLL ++A +SPT G
Sbjct: 6 PLLQLQNVGYLAGDAK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT 63
Query: 554 VRRSQK----LRIGRYSQHFVDLLTMEETPV------------SYLLR-LHPDQEGLSKQ 596
+ + L+ Y Q V +TP + +R PD
Sbjct: 64 LLFEGEDISTLKPEIYRQQ-VSYCA--QTPTLFGDTVYDNLIFPWQIRNQQPDPA----- 115
Query: 597 EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
L +F LP IA+LSGG+K R+ P +LLLDE T+ LD +
Sbjct: 116 -IFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
Query: 657 ALADALDEFTG----GVVLVSHDSRLISRVCDD 685
+ + + + V+ V+HD I+ D
Sbjct: 175 NVNEIIHRYVREQNIAVLWVTHDKDEINH-ADK 206
|
Length = 225 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 64/248 (25%), Positives = 95/248 (38%), Gaps = 54/248 (21%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
LK S I G+R G++G NG GKSTLLKL+A I P
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIA--GIYKPT-------------------S 81
Query: 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQ- 299
V ++ L E A + G E+ +Y + ILG E
Sbjct: 82 GKVKVTGKVAPLIELGAGFDPELT--GREN-------------IYLRGLILGLTRKEIDE 126
Query: 300 -ASKIL--AGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL--- 353
+I+ A LG + P K++S G R++ + A V+P +LLLDE D
Sbjct: 127 KVDEIIEFAELGDFIDQ---PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183
Query: 354 -RAVLWLEEYLCRWK-KTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQ 411
+ + L E K KT+V+VSHD + C I L ++ E
Sbjct: 184 EKCLERLNEL--VEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME----GSPEEVIPA 237
Query: 412 RRKEMNKK 419
+++ +
Sbjct: 238 YEEDLADR 245
|
Length = 249 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL----CRWKKTLVVVSHDR 377
SGG + R++LARAL + P +LLLDEPT+ LD + L + T+V+V+HD
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 378 DFLNTVCTEIIHLHD 392
D + ++ L D
Sbjct: 162 DEAARLADRVVVLRD 176
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 61/234 (26%), Positives = 95/234 (40%), Gaps = 37/234 (15%)
Query: 171 FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230
F + + S + G+ GLVG +G GKSTL ++LA P +I
Sbjct: 297 FVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI-------I 349
Query: 231 VVGDDRSAIQAVVSAHEELVKLREEV--------ASLQNSTSVDGEEDGDDANDAGEKLA 282
G D EL +LR + +SL +V G+ LA
Sbjct: 350 FDGQDLDL------TGGELRRLRRRIQMVFQDPYSSLNPRMTV------------GDILA 391
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
E A+ +++L +G E R SGG R R+++ARAL ++P LL
Sbjct: 392 EPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLL 451
Query: 343 LLDEPTNHLD---LRAVL-WLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392
+LDEP + LD VL L++ T + +SHD + + + ++D
Sbjct: 452 ILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD 505
|
Length = 539 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 56/259 (21%)
Query: 148 SRTSVLEGQDDADANVKDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKST 206
D D IT++N S+ G+ LL + + G+R + G +G GK++
Sbjct: 375 KPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTS 434
Query: 207 LLKLLA----WR--KIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQ 260
LL+ LA W +I +P + +L + Q R + LRE +
Sbjct: 435 LLRALAGLWPWGSGRISMPADSALLFLPQ------RPYLPQ--------GTLREALCYPN 480
Query: 261 NSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320
+ E + G L +L E+L E + ++L
Sbjct: 481 AAPDFSDAELVAVLHKVG--LGDLAERLD------EEDRWDRVL---------------- 516
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDRD 378
SGG + R++ AR L +P + LDE T+ LD L + L T++ V H
Sbjct: 517 -SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR-- 573
Query: 379 FLNTVCTEIIHLHDQKLHF 397
+ + H ++L
Sbjct: 574 ------PTLWNFHSRQLEL 586
|
Length = 604 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 34/210 (16%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-----------RSQKLR 561
L VD+ + G+ V +VGPNGAGK+TLL + G L+PT G V R+ R
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 562 IGRYSQHFV--------DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH 613
+ Q ++ M TP + R E + + AV + + G+
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTP--HRSRFDTWTE--TDRAAVERAMERTGVAQFAD 134
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM----QSIDALADALDEFTGGV 669
P+ LSGG++ RV+ +LLLDEPT LD+ ++++ + +D+
Sbjct: 135 -RPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTA 192
Query: 670 VLVSHDSRLISRVCDDEERSEIWVVENGTV 699
V HD L +R CD E+ ++ +G V
Sbjct: 193 VAAIHDLDLAARYCD-----ELVLLADGRV 217
|
Length = 402 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 32/226 (14%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
E+LK S++ + G ++G +G GKST L+ + + + P +I V E + R
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI---RVNGEEIRLKRDK 76
Query: 239 IQAVVSAHE-ELVKLREEVA------SLQNSTSVDGEEDGDDANDAGEKLAELYE-KLQI 290
+ A + +L +LR + +L + +V L + E + +
Sbjct: 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV---------------LENVIEAPVHV 121
Query: 291 LGSDAAEA--QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
LG AEA +A K LA +G ++ P SGG + R+++ARAL ++P ++L DEPT
Sbjct: 122 LGVSKAEAIERAEKYLAKVGIAEKADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPT 180
Query: 349 NHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLH 391
+ LD + VL + + L +T+VVV+H+ F V + +I LH
Sbjct: 181 SALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLH 226
|
Length = 256 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 75/254 (29%), Positives = 113/254 (44%), Gaps = 57/254 (22%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTL---LNLL----AGDLS 548
+QL ++ Y + L D+ + G + ++GP+GAGKS+L LNLL +G L+
Sbjct: 3 IQLNGINCFYGAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 549 -----------PTEGEVRRSQKLR--IGRYSQ------HFVDLLTMEETPVSYLLRLHPD 589
P++ +R +LR +G Q H + E P L
Sbjct: 61 IAGNHFDFSKTPSDKAIR---ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL------ 111
Query: 590 QEGLSKQEAV-RAK--LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646
GLSK +A+ RA+ L + L + P+ LSGGQ+ RV M +P +LL DEP
Sbjct: 112 --GLSKDQALARAEKLLERLRLKPYADRFPL-HLSGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 647 TNHLDMQSIDALADALDEFTG-GV--VLVSHD----SRLISRVCDDEERSEIWVVENGTV 699
T LD + + + E G+ V+V+H+ + SRV E +VE G
Sbjct: 169 TAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGH---IVEQGDA 225
Query: 700 SRF--PGT--FEEY 709
S F P T F+ Y
Sbjct: 226 SCFTQPQTEAFKNY 239
|
Length = 242 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 47/183 (25%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVRRSQKLRIGRYSQHFV 570
L V++ I G A++GPNG+GKSTL + G TEGE+ +
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGE----------- 64
Query: 571 DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF----------GLPSHNHLTPI-AK 619
D+ + P++ RA+LG F G+ + + L +
Sbjct: 65 DITDLP-----------PEE---------RARLGIFLAFQYPPEIPGVKNADFLRYVNEG 104
Query: 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDS 676
SGG+K R + + +P + +LDEP + LD+ ++ +A+ +++ V++++H
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 677 RLI 679
RL+
Sbjct: 165 RLL 167
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 56/200 (28%), Positives = 84/200 (42%), Gaps = 39/200 (19%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----LRIGRYSQH 568
L+D+ + + G A++GPNG GKSTLL A L+P G V K L + ++
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 569 FVDLLTMEETPVSYLLRLHPDQEGLSKQEAV---RAK----LGKFGLPSHNHLT------ 615
++ L + H EG++ +E V R+ G+ + +
Sbjct: 78 -----------LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT 126
Query: 616 --------PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF-T 666
+ LSGGQ+ R + ++LLDEPT +LD+ L + E T
Sbjct: 127 RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186
Query: 667 GG--VVLVSHDSRLISRVCD 684
G VV V HD SR CD
Sbjct: 187 QGKTVVTVLHDLNQASRYCD 206
|
Length = 255 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-13
Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 36/241 (14%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L + V+ P + L + + G +AI+GP+G+GKSTL L+ G PT G VR
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 556 -----------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLG 604
+ IG Q D+ T + R + + EA AKL
Sbjct: 377 LDGADLKQWDRETFGKHIGYLPQ---DVELFPGTVAENIARFGENADPEKIIEA--AKLA 431
Query: 605 K-----FGLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
LP + T I A LSGGQ+ R+ P +++LDEP ++LD +
Sbjct: 432 GVHELILRLPD-GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490
Query: 656 DALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712
ALA+A+ VV+++H L+ V +I V+++G ++RF G +E
Sbjct: 491 QALANAIKALKARGITVVVITHRPSLLGCV------DKILVLQDGRIARF-GERDEVLAK 543
Query: 713 L 713
L
Sbjct: 544 L 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 2e-13
Identities = 67/209 (32%), Positives = 95/209 (45%), Gaps = 28/209 (13%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+L +IE+ F Y + L + + G + + G NGAGK+TLL L+AG L+P +GE+
Sbjct: 1 MLDVIELDFDY--HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI 58
Query: 555 ---RRSQKLRIGRYSQH--FVD-------LLTMEETPVSYLLRLHPDQEGLSKQEAVRAK 602
R+S K + Y + FV LT+ E + L +H + E R
Sbjct: 59 LFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE---NCLYDIHFSPGAVGITELCR-- 113
Query: 603 LGKFGLPSHNHLT--PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD 660
L S HL P LS GQK +V + MSK + LLDEP LD S+ +
Sbjct: 114 -----LFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168
Query: 661 ALDEF--TGGVVLVSHDSRLISRVCDDEE 687
+ E GG VL++ L D EE
Sbjct: 169 KIQEHRAKGGAVLLTSHQDLPLNKADYEE 197
|
Length = 200 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-13
Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 29/225 (12%)
Query: 495 LLQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
+++ V+F+YP R D L DV + G A+VGP+G+GKST++ LL P G+
Sbjct: 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ 70
Query: 554 VRRSQK---LRIGRYSQHFVDLLTMEET--------PVSYLLRLHPDQEGLSKQEAVRAK 602
V K +Y V L+ E ++Y L+ + K+ A +A
Sbjct: 71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFEC--VKEAAQKAH 128
Query: 603 LGKF--GLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
F L + T + ++LSGGQK RV + P +L+LDE T+ LD +S
Sbjct: 129 AHSFISELA-SGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 657 ALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ AL ++ V++++H + R +I V++ G +
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERA------DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 18/196 (9%)
Query: 469 LPEAPKKWRDYSV-EFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVA 527
L +P + + + E P ++ + L VS SY ++ ++ + + G
Sbjct: 14 LELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDK--AVVNGLSFTVASGECFG 71
Query: 528 IVGPNGAGKSTLLNLLAGDLSPTEGEVR----------RSQKLRIGRYSQHFVDLLTMEE 577
++GPNGAGKST+ ++ G SP G++ R + RIG Q D L +E
Sbjct: 72 LLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ--FDNLDLEF 129
Query: 578 TPVSYLLRLHPDQEGLSKQ--EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635
T LL + G+S + EAV L +F ++ LSGG K R+ +
Sbjct: 130 TVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188
Query: 636 SKPHILLLDEPTNHLD 651
+ P +L+LDEPT LD
Sbjct: 189 NDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-13
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 30/184 (16%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS---------QKLRIG 563
L V + I G ++GP+G GK+TLL L+AG +PT GE+ K +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 564 RYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQE---AVRAKLGKFGLPSHNHLTPIA 618
Q++ LT+ E +++ LRL + L K E V L L + + P +
Sbjct: 76 TVFQNYALFPHLTVFEN-IAFGLRL----KKLPKAEIKERVAEALDLVQLEGYANRKP-S 129
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ-------SIDALADALDEFTGGVVL 671
+LSGGQ+ RV +++P +LLLDEP LD++ + L L T V
Sbjct: 130 QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GIT--FVF 186
Query: 672 VSHD 675
V+HD
Sbjct: 187 VTHD 190
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (172), Expect = 3e-13
Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 26/204 (12%)
Query: 495 LLQLIEVSFSYPNREDFK---LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
+++ +V+++Y F L D+D+ + G+ A++G G+GKSTLL L G L PTE
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 552 GEVR---------------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQ 596
G+V + + ++G Q F + EET V + P G+ K+
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ-FPESQLFEET-VLKDVAFGPQNFGIPKE 118
Query: 597 EAVR---AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
+A + KL GL +LSGGQ RV I +P +L+LDEPT LD +
Sbjct: 119 KAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178
Query: 654 S---IDALADALDEFTGGVVLVSH 674
+ + L +++ + VVLV+H
Sbjct: 179 ARIEMMQLFESIHQSGQTVVLVTH 202
|
Length = 288 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 34/227 (14%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+L+ ++ +SYP+ + L ++ + G VA++GPNGAGKSTL G L PT GEV
Sbjct: 1 ILETRDLKYSYPDGTE-ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 555 R-RSQKLR------------IGRYSQHFVDLL---TMEETPVSYLLRLHPDQEGLSKQEA 598
+ + ++ +G Q+ D L T+EE + P GLSK+E
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEED-----VAFGPLNLGLSKEEV 114
Query: 599 ---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
V+ L G+ + P LSGGQK RV I KP I++LDEPT+ LD
Sbjct: 115 EKRVKEALKAVGMEGFEN-KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 656 DALADALDEFT--GGVVLVS-HDSRLISRVCDDEERSEIWVVENGTV 699
+ L + G +++S HD L+ D ++V+ +G +
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADK-----VYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 4e-13
Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 53/251 (21%)
Query: 166 ITIDNFSVAARGK-----ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK 220
I ++N S L S+ I G+ +G++G +G GKSTLL+L+ + P
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 221 NIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA------SLQNSTSVDG------E 268
++ V G D +A+ EL +LR+++ +L +S +V E
Sbjct: 62 SV-------FVDGQDLTALSE-----AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE 109
Query: 269 EDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMR 328
G + +++AEL E + + SD A+ +++ SGG + R
Sbjct: 110 LAGVPKAEIKQRVAELLELVGL--SDKADRYPAQL------------------SGGQKQR 149
Query: 329 ISLARALFVQPTLLLLDEPTNHLDL---RAVL-WLEEYLCRWKKTLVVVSHDRDFLNTVC 384
+++ARAL P +LL DE T+ LD +++L L++ T+V+++H+ + + +C
Sbjct: 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRIC 209
Query: 385 TEIIHLHDQKL 395
+ L +L
Sbjct: 210 DRVAVLDQGRL 220
|
Length = 339 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-13
Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 33/234 (14%)
Query: 156 QDDADANVKDITIDNFSVAARGKEL--LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213
+ + + + N S G++ LK+ ++ ++ G++ ++G +G GKSTLL+LLA
Sbjct: 327 DEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA- 385
Query: 214 RKIPVPKNIDVLLVEQEVVGDDRSAIQ---AVVSAHEELVKLREEVASLQNSTSVDGEED 270
P+ + L E+ D A++ +V++ L +L+++ +
Sbjct: 386 -GAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF-----SGTLRDNLRLANP-- 437
Query: 271 GDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRI 329
DA+D EL+ LQ +G E+ + LG E GR SGG R R+
Sbjct: 438 --DASDE-----ELWAALQQVGLEKLLESAPDGLNTWLG---EG-GRR---LSGGERRRL 483
Query: 330 SLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSHDRDFL 380
+LARAL L LLDEPT LD R VL L KTL++V+H L
Sbjct: 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGL 536
|
Length = 573 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 55/261 (21%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP--- 219
+ +I S ++ GKE+LK SV+ G Y +VGP+G GKSTL+KL+ P
Sbjct: 1 MNEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 220 -------KNIDVLLVEQEV--VGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEED 270
K IDV+ + +++ V + V + E + GE++
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY------------GPMLKGEKN 108
Query: 271 GDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRIS 330
D E Y L+ +G KE R K+ SGG R+S
Sbjct: 109 VD---------VEYY------------------LSIVGLNKEYATRDVKNLSGGEAQRVS 141
Query: 331 LARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTE 386
+AR L P +LLLDEPT+ LD + +EE + + K T++ ++H+ + +
Sbjct: 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDY 201
Query: 387 IIHLHDQKLHFYRGNFDDFES 407
L+ L Y +D F +
Sbjct: 202 TAFLNKGILVEYAKTYDFFTN 222
|
Length = 241 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG---DLSPTEGEV-------RRSQ-KLR 561
L+DV + ++ G +AI+G +G+GK+TLL+ ++G T G++ + Q +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 562 IGRYSQH--FVDLLTMEET-PVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA 618
+ Q + LT+ ET + +LRL +A+R K + L LT I
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPR-----KSSDAIRKKRVEDVLLRDLALTRIG 137
Query: 619 K-----LSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
+SGG++ RV + P +L+LDEPT+ LD
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 4e-13
Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 23/157 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL------------NLLAGDLSPTEGEVR-RSQK 559
L ++D+ ID G V I+GP+G+GKSTLL +L+ L + +V R +
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR 76
Query: 560 LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNHL 614
G Q F LT E + LR+ G SK+EA R L K GL H
Sbjct: 77 QEAGMVFQQFYLFPHLTALENVMFGPLRV----RGASKEEAEKQARELLAKVGLAERAHH 132
Query: 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
P ++LSGGQ+ RV KP ++L DEPT+ LD
Sbjct: 133 YP-SELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
|
Length = 240 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 6e-13
Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 31/197 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----------RSQKLRI 562
L++V + + G VA++G +G GKSTL LL G SP++G V R+Q+
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 563 GRYSQH-FVDLL-------TMEET---PVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-PS 610
R Q F D + T+ E P+ +LL L D+ + L L S
Sbjct: 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSL--DKAE--RLARASEMLRAVDLDDS 143
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM----QSIDALADALDEFT 666
P +LSGGQ RV +P +L+LDE ++LD+ I L +F
Sbjct: 144 VLDKRP-PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG 202
Query: 667 GGVVLVSHDSRLISRVC 683
+ ++HD RL+ R C
Sbjct: 203 TACLFITHDLRLVERFC 219
|
Length = 268 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 7e-13
Identities = 72/234 (30%), Positives = 95/234 (40%), Gaps = 22/234 (9%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I + + SV +L + + G GLVGPNG GK+TLL+ A P VL
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLR--AINGTLTPTAGTVL 61
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
V GDD A+ A VAS+ TS+ E D + G
Sbjct: 62 -----VAGDDVEALSAR--------AASRRVASVPQDTSLSFEFDVRQVVEMGRTP---- 104
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
+ + + A + + RP S SGG R R+ LARAL +LLLD
Sbjct: 105 HRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164
Query: 346 EPTNHLDL-RAVLWLE--EYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396
EPT LD+ V LE L KT V HD D C E++ L D ++
Sbjct: 165 EPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218
|
Length = 402 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 7e-13
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 46/225 (20%)
Query: 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
PLLQ+ +S SY + DV + G + IVG +G+GKSTLL LAG L+P G
Sbjct: 1 KPLLQVSGLSKSYGGGKGC--RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG 58
Query: 553 EVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRL-------HPDQEGLSKQEAVRAKL-- 603
+ S ++L + E L+R +P ++GL + + A +
Sbjct: 59 TATYIMR------SGAELELYQLSEAERRRLMRTEWGFVHQNP-RDGLRMRVSAGANIGE 111
Query: 604 ----------GKFGLPSHNHLTPI-----------AKLSGGQKARVVFTSISMSKPHILL 642
G + + L + SGG + R+ +++P ++
Sbjct: 112 RLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVF 171
Query: 643 LDEPTNHLDM----QSIDALADALDEFTGGVVLVSHD---SRLIS 680
+DEPT LD+ + +D L + + V++V+HD +RL++
Sbjct: 172 MDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA 216
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-------RRSQKLRIGRY 565
+ ++ + G ++GPNGAGK+T ++ G L PTEGE+ + K RIG
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 566 SQH--FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR---AKLGKFGLPSHNHLTPIAKL 620
+ +T+E+ + YL L G+ K E + A L + + I +L
Sbjct: 78 PEERGLYPKMTVEDQ-LKYLAELK----GMPKAEIQKKLQAWLERLEIVGKKT-KKIKEL 131
Query: 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA---LDEFTGGVVLVSHDSR 677
S G + ++ F S + +P +L+LDEP + LD +++ L DA L E ++ SH
Sbjct: 132 SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME 191
Query: 678 LISRVCDD 685
+ +CD
Sbjct: 192 HVEELCDR 199
|
Length = 300 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 7e-13
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 20/208 (9%)
Query: 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
+ + L+ VS SY ++ ++D+ I G ++GPNGAGKST+ +L G +SP
Sbjct: 1 SNVAIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR 58
Query: 552 GEVR----------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQ--EAV 599
G++ R ++ IG Q D L E T LL + G+S + EAV
Sbjct: 59 GKITVLGEPVPSRARLARVAIGVVPQ--FDNLDPEFTVRENLL-VFGRYFGMSTREIEAV 115
Query: 600 RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA 659
L +F +A LSGG K R+ ++ P +L+LDEPT LD + +
Sbjct: 116 IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175
Query: 660 DALDEFTG---GVVLVSHDSRLISRVCD 684
+ L ++L +H R+CD
Sbjct: 176 ERLRSLLARGKTILLTTHFMEEAERLCD 203
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 8e-13
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQKLR---IGRYSQHFVDL--- 572
+ G R+A+VGP+GAGK++LLN L G L P +G ++ +LR + +H +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQN 431
Query: 573 -LTMEETPVSYLLRLHPDQEGLSKQEAV-RAKLGKFGLPSHNH-L-TPI----AKLSGGQ 624
T +L +PD Q+A+ A + +F LP L TPI A LS GQ
Sbjct: 432 PQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEF-LPLLPQGLDTPIGDQAAGLSVGQ 490
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSHDSRLISRV 682
R+ + +LLLDEPT LD S + AL+ + ++V+H ++
Sbjct: 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH------QL 544
Query: 683 CDDEERSEIWVVENGT-VSRFPGTFEE 708
D + +IWV+++G V + G + E
Sbjct: 545 EDLAQWDQIWVMQDGQIVQQ--GDYAE 569
|
Length = 588 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-13
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 46/224 (20%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
PLL + +S Y + DV + G + IVG +G+GK+TLL ++G L+P G
Sbjct: 5 PLLSVSGLSKLYGPGKGC--RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGT 62
Query: 554 VRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRL-------HPDQEGLSKQEAVRAKLGKF 606
V + DL TM E LLR +P ++GL Q + +G+
Sbjct: 63 VTYRMR------DGQPRDLYTMSEAERRRLLRTEWGFVHQNP-RDGLRMQVSAGGNIGER 115
Query: 607 GLPSHN-HLTPI----------------------AKLSGGQKARVVFTSISMSKPHILLL 643
+ H I SGG + R+ +++P ++ +
Sbjct: 116 LMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFM 175
Query: 644 DEPTNHLDM----QSIDALADALDEFTGGVVLVSHD---SRLIS 680
DEPT LD+ + +D L + E VV+V+HD +RL++
Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA 219
|
Length = 258 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 8e-13
Identities = 65/224 (29%), Positives = 93/224 (41%), Gaps = 41/224 (18%)
Query: 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-------------- 555
DF L D D + AI G +G+GK+TL+ L+AG P EGE+
Sbjct: 11 DFSL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIF 69
Query: 556 -RSQKLRIGRYSQ------HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL 608
+K RIG Q H L++ + R P + +S E V LG
Sbjct: 70 LPPEKRRIGYVFQEARLFPH----LSVRGNLRYGMKRARPSERRIS-FERVIELLGI--- 121
Query: 609 PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DE 664
H +LSGG+K RV +S P +LL+DEP LD + L E
Sbjct: 122 -GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE 180
Query: 665 FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
F ++ VSH + + R+ D + V+E+G V+ G E
Sbjct: 181 FGIPILYVSHSLQEVLRLAD-----RVVVLEDGRVAAA-GPIAE 218
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 9e-13
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 34/212 (16%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----------RSQKLRI 562
L++V + I+ G V ++G +G GKSTL LL G P +G V R Q+
Sbjct: 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAF 86
Query: 563 GRYSQH-FVDL-------LTMEET---PVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH 611
R Q F D +T+ + P+ +L L + ++ + L GL S
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE----QKARIAELLDMVGLRSE 142
Query: 612 NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM----QSIDALADALDEFTG 667
+ +LSGGQ R+ KP +++LDE ++LDM ++ L F
Sbjct: 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
Query: 668 GVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ ++HD RL+ C + V++ G +
Sbjct: 203 AYLFITHDLRLVQSFCQ-----RVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 9e-13
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 36/215 (16%)
Query: 514 SDVDVGIDMGTRVAIVGPNGAGKST----LLNLLAGDLSPTEGEVR-RSQKLRIGRYSQH 568
D+++ + G +A+VG +G+GKS +L LL L+ T GE+ + L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62
Query: 569 ------------FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA--KLGKFGLPSHN-- 612
F L TM + L L LSKQ L GLP
Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGK----LSKQARALILEALEAVGLPDPEEV 118
Query: 613 -HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE----FTG 667
P +LSGG RV+ + +P L+ DEPT LD+ + + L E F
Sbjct: 119 LKKYPF-QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGT 177
Query: 668 GVVLVSHDSRLISRVCDD---EERSEIWVVENGTV 699
G++L++HD +++R+ D+ + I VE GTV
Sbjct: 178 GILLITHDLGVVARIADEVAVMDDGRI--VERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 9e-13
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 18/181 (9%)
Query: 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKL 560
+FKL +V + ++ G I+GP G+GKS LL +AG + P G++ +K
Sbjct: 12 EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR 71
Query: 561 RIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA 618
I Q++ +T+ + ++Y L+ + + V G+ + P
Sbjct: 72 DISYVPQNYALFPHMTVYKN-IAYGLK-KRKVDKKEIERKVLEIAEMLGIDHLLNRKP-E 128
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS----IDALADALDEFTGGVVLVSH 674
LSGG++ RV + P ILLLDEP + LD+++ + L EF V+ V+H
Sbjct: 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188
Query: 675 D 675
D
Sbjct: 189 D 189
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL-- 353
+A ++L +G + P++ SGG + R+++ARAL P ++L DEPT +LD
Sbjct: 117 RRERAEELLERVGLGDRLNHYPSE-LSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
Query: 354 -RAVLWLEEYLCRWK-KTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ V+ L L + T+VVV+HD + II L D K+
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDPELAEY-ADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 50/244 (20%)
Query: 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
K + I LK S + G+R GL+G NG GKSTLL+LLA I P +
Sbjct: 21 KKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLA--GIYPPDSGT 78
Query: 224 VLLVEQEVVGDDRSAIQAVVSAHEEL-----VKLREEVASLQNSTSVDGEEDGDDANDAG 278
V V G S + + EL + L L G +
Sbjct: 79 V-----TVRGRVSSLLGLGGGFNPELTGRENIYLN---GRLL----------GLSRKEID 120
Query: 279 EKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338
EK+ E+ E + LG + P K++S G + R++ A A ++
Sbjct: 121 EKIDEIIE-----------------FSELG---DFIDLPVKTYSSGMKARLAFAIATALE 160
Query: 339 PTLLLLDEPT----NHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQK 394
P +LL+DE + L E L + KT+++VSHD + +C + L K
Sbjct: 161 PDILLIDEVLAVGDAAFQEKCQRRLRE-LLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219
Query: 395 LHFY 398
+ F
Sbjct: 220 IRFD 223
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 23/222 (10%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
V+++T++ F+ ++ S + G+ G+VG +G GKSTL L +P I
Sbjct: 8 VENLTVE-FATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALM-GLLPEGGRI 65
Query: 223 D---VLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGE 279
V+L ++++G ++ + ++ ++ + SL ++ G+
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMI-FQDPMTSLNPVMTI------------GD 112
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFT-KEMQGRPTKSFSGGWRMRISLARALFVQ 338
++ E A +A ++L +G E + R SGG R R+ +A AL ++
Sbjct: 113 QIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALK 172
Query: 339 PTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKT-LVVVSHD 376
P LL+ DEPT LD+ +L L + L R ++ ++HD
Sbjct: 173 PKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214
|
Length = 539 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 44/232 (18%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
K++L ++ I+ G+ L GP+G GK+TLL L+ + ++ VL QE+ G
Sbjct: 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVL--GQELYGASE- 74
Query: 238 AIQAVVSAHEELVKLREEVA----------SLQNSTSVDGEEDGDDANDAGEKLAELYEK 287
+ELV+LR + L +V + EL
Sbjct: 75 ---------KELVQLRRNIGYIFQAHNLLGFLTARQNV-------------QMALELQPN 112
Query: 288 LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
L A +A +L +G + P + SGG + R+++ARAL +P L+L DEP
Sbjct: 113 L---SYQEARERARAMLEAVGLGDHLDYYP-HNLSGGQKQRVAIARALVHRPKLVLADEP 168
Query: 348 TNHLDL---RAVLWLEEYLCRWKK-TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
T LD R V+ L + L R + T+++V+HD L+ V I+H+ D KL
Sbjct: 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 37/209 (17%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
++L + S I G+ +VG +G GKSTLL LL + P + DV+ Q + SA
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG--GLDTPTSGDVIFNGQPM-SKLSSA 79
Query: 239 IQAVVSAHE-----ELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS 293
+A + + + L + +L+N L I
Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAM----------------------PLLIGKK 117
Query: 294 DAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHL 351
AE A ++LA +G RP++ SGG R R+++ARAL P L+L DEPT +L
Sbjct: 118 KPAEINSRALEMLAAVGLEHRANHRPSE-LSGGERQRVAIARALVNNPRLVLADEPTGNL 176
Query: 352 DLR---AVLWLEEYLCRWKKT-LVVVSHD 376
D R ++ L L R + T +VV+HD
Sbjct: 177 DARNADSIFQLLGELNRLQGTAFLVVTHD 205
|
Length = 233 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-12
Identities = 66/247 (26%), Positives = 102/247 (41%), Gaps = 55/247 (22%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I I N S + L ++ + G L+GP+G GKSTLL+++A + P I
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI--- 57
Query: 226 LVEQEVVGDDRSAIQA------VVSAHEELVK---LREEVASLQNSTSVDGEEDGDDAND 276
+ G D + + A V H L K +R+ +A
Sbjct: 58 ----RLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAF------------------ 95
Query: 277 AGEKLAELYEKLQILGSDAAE--AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARA 334
L+I A+ A+ ++L + + R SGG R R++LARA
Sbjct: 96 ----------GLEIRKHPKAKIKARVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARA 144
Query: 335 LFVQPTLLLLDEPTNHLD------LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEII 388
L V+P +LLLDEP LD LR+ WL + T V V+HD++ V I+
Sbjct: 145 LAVEPQVLLLDEPFGALDAKVRKELRS--WLRKLHDEVHVTTVFVTHDQEEAMEVADRIV 202
Query: 389 HLHDQKL 395
+ + K+
Sbjct: 203 VMSNGKI 209
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 44/220 (20%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+++ VS Y N++ + DV++ I+ G + ++GP+G+GK+T L ++ + PT GE+
Sbjct: 1 MIEFENVSKRYGNKK--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 555 R------RSQ---KLR--IGRYSQ------HFVDLLTMEETPVSYLLRLHPDQEGLSKQE 597
+LR IG Q H LT+ E ++ + +L G K+
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPH----LTVAEN-IATVPKL----LGWDKER 109
Query: 598 A---VRAKLGKFGLPSHNHLT--PIAKLSGGQKARV-VFTSISMSKPHILLLDEPTNHLD 651
L GL + P +LSGGQ+ RV V +++ P ILL+DEP LD
Sbjct: 110 IKKRADELLDLVGLDPSEYADRYP-HELSGGQQQRVGVARALAAD-PPILLMDEPFGALD 167
Query: 652 MQSIDALADAL----DEFTGGVVLVSHDS----RLISRVC 683
+ L + + E +V V+HD +L R+
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA 207
|
Length = 309 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKLRIG 563
L+D+ + I G VA++GP+G+GK+TLL ++AG T G +R ++ ++G
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 564 RYSQHFVDLLTMEETP-VSYLLRLHPDQEGLSKQEAVRAKLGKF-GLPSHNHLTP--IAK 619
QH+ M +++ L + P +E + A++AK+ + + HL A+
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNA-AAIKAKVTQLLEMVQLAHLADRYPAQ 136
Query: 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE------FTGGVVLVS 673
LSGGQK RV +P ILLLDEP LD Q L L + FT V V+
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS--VFVT 194
Query: 674 HD 675
HD
Sbjct: 195 HD 196
|
Length = 353 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 25/197 (12%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+LQ+ + Y + L D+++ ++ G + ++GP+G GK+TLLNL+AG + G +
Sbjct: 1 MLQISHLYADYGGKP--ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 555 RRSQKLRIGRYSQHFV-----DLLTMEET--PVSYLLRLHPDQEGLSKQE---AVRAKLG 604
K G ++ V LL V++ L+L G+ K + L
Sbjct: 59 TLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQL----AGVEKMQRLEIAHQMLK 114
Query: 605 KFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD------MQSIDAL 658
K GL I +LSGGQ+ RV + P +LLLDEP LD MQ++ L
Sbjct: 115 KVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL--L 171
Query: 659 ADALDEFTGGVVLVSHD 675
E V+L++HD
Sbjct: 172 LKLWQETGKQVLLITHD 188
|
Length = 255 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 62/268 (23%), Positives = 108/268 (40%), Gaps = 54/268 (20%)
Query: 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLV 227
N S + + + S+ + YGL+GPNG GKSTLLK++ I P + +++
Sbjct: 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMIT--GILRPTSGEIIFD 60
Query: 228 EQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK 287
D I +++ E +N T+ E
Sbjct: 61 GHPWTRKDLHKIGSLI----------ESPPLYENLTA--------------------REN 90
Query: 288 LQI----LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
L++ LG + + L T + + K FS G + R+ +A AL P LL+
Sbjct: 91 LKVHTTLLGLPDSRIDEVLNIVDLTNTGK---KKAKQFSLGMKQRLGIAIALLNHPKLLI 147
Query: 344 LDEPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400
LDEPTN LD + L E + + + T+++ SH + +E+ L D + G
Sbjct: 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH-------ILSEVQQLAD-----HIG 195
Query: 401 NFDDFESGYEQRRKEMNKKFEIYEKQVK 428
+ GY+ + + +++ + VK
Sbjct: 196 IISEGVLGYQGKINKSENLEKLFVEVVK 223
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-12
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP------VP 219
I ++N S GK LLK S+ I+ G R GLVG NG GKSTLLKL+A P
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 220 KNIDVLLVEQ 229
+ + EQ
Sbjct: 61 STVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 65/246 (26%), Positives = 108/246 (43%), Gaps = 33/246 (13%)
Query: 166 ITIDNFSVA-ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
I ++N S GK+ LK S+ I+ G+ L+GP+G GKSTLL+ L + P + V
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLN-GLVE-PTSGSV 58
Query: 225 LLVEQEVVGDDRSAIQAV------VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAG 278
L+ ++ A++ + + L+ E ++ L+N S
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLI---ERLSVLENVLS-------------- 101
Query: 279 EKLAE--LYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALF 336
+L + L L + +A L +G + + SGG + R+++ARAL
Sbjct: 102 GRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-LDKAYQRADQLSGGQQQRVAIARALM 160
Query: 337 VQPTLLLLDEPTNHLD---LRAVLWLEEYLCRWK-KTLVVVSHDRDFLNTVCTEIIHLHD 392
QP L+L DEP LD R V+ L + + R + T++V H D I+ L D
Sbjct: 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220
Query: 393 QKLHFY 398
++ F
Sbjct: 221 GRIVFD 226
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 2e-12
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 54/240 (22%)
Query: 155 GQDDADANVKDITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL- 211
A A+ +T++N F+ + + +LK S++I G++ L+G G GKSTLL+LL
Sbjct: 328 TTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
Query: 212 -AWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEED 270
AW P+ ++LL Q + +A++ +S +V R + S
Sbjct: 388 RAW----DPQQGEILLNGQPIADYSEAALRQAIS----VVSQRVHLFS------------ 427
Query: 271 GDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ------------GRPT 318
A L + L + +A++ ++L +G K ++ GR
Sbjct: 428 -----------ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQ- 475
Query: 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSH 375
SGG + R+ +ARAL LLLLDEPT LD R +L L + KT+++++H
Sbjct: 476 --LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITH 532
|
Length = 574 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 32/209 (15%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG--- 552
++ EVS+S +E K D+ V + G IVGP+GAGKSTL+ L+ + PTEG
Sbjct: 4 IEFKEVSYSSFGKEILK--DISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 553 ------------EVRRSQKLRIGR-YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV 599
++RR +IG + Q + T+++ + P +G K V
Sbjct: 62 IDGVDIKTIDVIDLRR----KIGMVFQQPHLFEGTVKDN-----IEYGPMLKG-EKNVDV 111
Query: 600 RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSID 656
L GL + LSGG+ RV + P +LLLDEPT+ LD + I+
Sbjct: 112 EYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 657 ALADALDEFTG-GVVLVSHDSRLISRVCD 684
L L V+ ++H+ R+ D
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGD 200
|
Length = 241 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQH-FVD 571
++++ + + + ++GPNGAGKSTLL ++ G L PT GE+ +++
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI----IFDGHPWTRKDLHK 71
Query: 572 LLTMEETPVSYL-------LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQ 624
+ ++ E+P Y L++H GL + L L ++ + S G
Sbjct: 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSR-IDEVLNIVDL-TNTGKKKAKQFSLGM 129
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG---GVVLVSH 674
K R+ ++ P +L+LDEPTN LD I L + + F V+L SH
Sbjct: 130 KQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I + N G+ +L + + G+ ++GP+G GK+TLL+ + + P I V
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVK-LREEVASLQNSTSVDGEEDGDDANDAGEKLAEL 284
+ + RS +S + L++ LR+ V + + ++ E + E
Sbjct: 64 DIT---IDTARS-----LSQQKGLIRQLRQHVGFVFQNFNLFPHRT------VLENIIEG 109
Query: 285 YEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344
++ + A A+A ++LA +G + P + SGG + R+++ARAL ++P ++L
Sbjct: 110 PVIVKGEPKEEATARARELLAKVGLAGKETSYP-RRLSGGQQQRVAIARALAMRPEVILF 168
Query: 345 DEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEII 388
DEPT+ LD + VL L + K+T+V+V+H+ F V I
Sbjct: 169 DEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI 215
|
Length = 250 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 67/245 (27%), Positives = 112/245 (45%), Gaps = 38/245 (15%)
Query: 486 PEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545
P P L + ++ + P ++ L + + G + I+GP+G+GKSTL LL G
Sbjct: 329 PAPQGA----LSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384
Query: 546 DLSPTEG-------EVRRSQKLRIGR---YSQHFVDLLTMEETPVSYLLRLHPDQEGLSK 595
PT G ++R+ + ++GR Y V+L + T + R + +
Sbjct: 385 IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL--FDGTIAENIARFGEEADPEKV 442
Query: 596 QEAVRAKLGK-----FGLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEP 646
EA A+L LP + T I A LSGGQ+ R+ P +++LDEP
Sbjct: 443 IEA--ARLAGVHELILRLPQ-GYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEP 499
Query: 647 TNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703
++LD + ALA A+ G VV+++H ++ D +I V+++G ++ F
Sbjct: 500 NSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVD-----KILVLQDGRIAAF- 552
Query: 704 GTFEE 708
G EE
Sbjct: 553 GPREE 557
|
Length = 580 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 41/227 (18%)
Query: 176 RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD 235
R E LK S I G+ G +GPNG GK+T LK+L+ P + V V
Sbjct: 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA---GLVPWKR 88
Query: 236 RSA----IQAVVSAHEEL---VKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL 288
R I V +L + + + L + ++L EL E L
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPAR-------FKKRLDELSELL 141
Query: 289 QILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
+ ++L P + S G RMR +A AL +P +L LDEPT
Sbjct: 142 DL----------EELLD----------TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181
Query: 349 NHLDLRAVLWLEEYL---CRWKKTLVVV-SHDRDFLNTVCTEIIHLH 391
LD+ A + +L R + T V++ SH + + ++ +
Sbjct: 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 3e-12
Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 36/209 (17%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSPTEGEV----------RRSQ- 558
L++V + + G ++G +GAGKSTL+ NLL PT G V S+
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE---RPTSGSVIVDGQDLTTLSNSEL 77
Query: 559 ---KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHN 612
+ +IG QHF +LL+ + L L + + K E V L GL +
Sbjct: 78 TKARRQIGMIFQHF-NLLSSRTVFGNVALPL--ELDNTPKDEIKRKVTELLALVGLGDKH 134
Query: 613 HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALADALDEFTG-G 668
P + LSGGQK RV S P +LL DE T+ LD QSI L ++ G
Sbjct: 135 DSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT 193
Query: 669 VVLVSHDSRLISRVCDDEERSEIWVVENG 697
++L++H+ ++ R+CD + V+ NG
Sbjct: 194 ILLITHEMDVVKRICD-----CVAVISNG 217
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-12
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 44/205 (21%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQH---F 569
L +V + ++ G VA+ GP+GAGKSTLL L + P G + +H +
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI----------LVRHEGAW 73
Query: 570 VDLLTMEETP-----------VSYLLRLHPD------------QEGLSKQEA---VRAKL 603
VDL VS LR+ P + G+ ++ A R L
Sbjct: 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELL 133
Query: 604 GKFGLPSHN-HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 662
+ +P HL P A SGG++ RV ++ ILLLDEPT LD + + + +
Sbjct: 134 ARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 663 DEF-TGGVVLVS--HDSRLISRVCD 684
E G L+ HD + V D
Sbjct: 193 AEAKARGAALIGIFHDEEVRELVAD 217
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 4e-12
Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRI 562
L V++ I G ++++G +G GKSTLLNL++G PT G V K +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSG 622
YS + LT+ E + R+ PD ++ V + GL +LSG
Sbjct: 61 QNYS--LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD-KRPGQLSG 117
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTGGVVLVSHD 675
G K RV +P +LLLDEP LD + L + L +E V++V+HD
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 40/249 (16%)
Query: 491 LTPPLLQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549
+ P +L L VS S+ FK L+D+ +D G ++GPNGAGK+TL++++ G P
Sbjct: 1 MNPIILYLDGVSVSF---GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP 57
Query: 550 TEGEV--RRSQKLR-----------IGR-------YSQHFV----DLLTMEETPVSYLLR 585
EGEV L IGR + V +L + V L
Sbjct: 58 QEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLF 117
Query: 586 LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645
E + + + L GL A LS GQK + + P +LLLDE
Sbjct: 118 ARLRAEERRRIDEL---LATIGLGDERDR-LAALLSHGQKQWLEIGMLLAQDPKLLLLDE 173
Query: 646 PTNHLDMQSIDALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703
P + + A+ L G +++V HD + + D ++ V+ G+V
Sbjct: 174 PVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIAD-----KVTVLHEGSVLA-E 227
Query: 704 GTFEEYKED 712
G+ +E + D
Sbjct: 228 GSLDEVQND 236
|
Length = 249 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 39/236 (16%)
Query: 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
+ +N +V K +L S+ + GK L+GPNG GKSTLLK A ++ P++ V
Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA--RLLTPQSGTV 59
Query: 225 LLVEQEV--VGDDRSAIQ-AVVSAHE---ELVKLREEVASLQNS-TSVDGEEDGDDANDA 277
L ++ + + + A + A++ H E + +RE VA ++ S+ G +D
Sbjct: 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN--- 116
Query: 278 GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337
++ + E+ +I + R SGG R R LA L
Sbjct: 117 -ARVNQAMEQTRIN--------------------HLADRRLTDLSGGQRQRAFLAMVLAQ 155
Query: 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWK---KTLVVVSHDRDFLNTVCTEIIHL 390
++LLDEPT +LD+ + L + KT+V V HD LN HL
Sbjct: 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD---LNQASRYCDHL 208
|
Length = 255 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 5e-12
Identities = 57/183 (31%), Positives = 77/183 (42%), Gaps = 43/183 (23%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVRRSQK 559
+S + P+ L D+ I G R+ I GP+G GKS+L LAG L P G
Sbjct: 6 LSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPWGSG------- 56
Query: 560 LRIGRYSQHFVDLLTMEETPVSYL----LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLT 615
RIG DLL + + P YL LR E + P +
Sbjct: 57 -RIGMPEGE--DLLFLPQRP--YLPLGTLR-----------EQLI-------YPWDD--- 90
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHD 675
LSGG++ R+ F + + KP + LDE T+ LD +S D L L E V+ V H
Sbjct: 91 ---VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHR 147
Query: 676 SRL 678
L
Sbjct: 148 PSL 150
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 6e-12
Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 55/246 (22%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
P+L++ +S Y + L V + ++ G VA++G NGAGK+TLL + G + P G
Sbjct: 2 PMLEVENLSAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59
Query: 554 VR------------RSQKLRIGRYSQHFV-------DLLTMEETPVSYLLRLHPDQEGLS 594
+ +L I +V LT+EE + +
Sbjct: 60 IIFDGEDITGLPPHERARLGIA-----YVPEGRRIFPRLTVEENLLLGAYARRDKEAQER 114
Query: 595 KQEAV-------RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647
E V + + + LSGG++ + MS+P +LLLDEP+
Sbjct: 115 DLEEVYELFPRLKERRNQRA----------GTLSGGEQQMLAIARALMSRPKLLLLDEPS 164
Query: 648 NHLDMQSI-----DALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702
L I +A+ + E ++LV ++R + D +V+ENG +
Sbjct: 165 EGL-APKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIAD-----RGYVLENGRI-VL 217
Query: 703 PGTFEE 708
GT E
Sbjct: 218 SGTAAE 223
|
Length = 237 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 6e-12
Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 24/225 (10%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV--GDD 235
K +LK +++I + +G++GP+G GKSTLLK+L R I + + + V+ +V+ G D
Sbjct: 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN-RLIEIYDS--KIKVDGKVLYFGKD 79
Query: 236 RSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDA 295
I A+ KLR+EV + + D K + EK +I
Sbjct: 80 IFQIDAI--------KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI----- 126
Query: 296 AEAQASKILAGLGFTKEMQGR---PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
+ + L +G KE+ R P SGG + R+++ARAL ++P +LL+DEPT+ +D
Sbjct: 127 -KKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
Query: 353 LRAVLWLEEYLCRWKK--TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ +E+ + K +V+VSH+ + V + L++ +L
Sbjct: 186 IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGEL 230
|
Length = 257 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 7e-12
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
L+ + VSF+ NR F ++ + + G AI+GP+G GK+TLL L+ G ++P GE+
Sbjct: 7 LVDMRGVSFTRGNRCIF--DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 555 ----------RRSQ----KLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQE 597
RS+ + R+ Q F D+ + V+Y LR H
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDN--VAYPLREHTQLPAPLLHS 122
Query: 598 AVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDA 657
V KL GL L P ++LSGG R +P +++ DEP D ++
Sbjct: 123 TVMMKLEAVGLRGAAKLMP-SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGV 181
Query: 658 LADALDEFTG--GV--VLVSHD 675
L + E GV V+VSHD
Sbjct: 182 LVKLISELNSALGVTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 7e-12
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
E L S+ + L+GP+G GKST L+ L + NI ++ G+ +
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIE-NI-------KITGEIKFE 69
Query: 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEA 298
Q + + +LV+LR+EV + + D+ G K+A + +K I D
Sbjct: 70 GQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVA-YGLKIAGVKDKELI---DQRVE 125
Query: 299 QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLW 358
++ K A TK+ R ++FSGG + RI +ARAL V+P ++LLDEPT+ LD +
Sbjct: 126 ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185
Query: 359 LEEYLCRWKK--TLVVVSHD 376
+EE L K T ++V+H+
Sbjct: 186 IEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 8e-12
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDR 377
SGG R R+ LARAL+ P +L+LDEP +HLD+ L + + K T +V++H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 378 DFLNTVCTEIIHLHDQKL 395
+ L + I+ L D ++
Sbjct: 157 ETLAS-ADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 8e-12
Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 34/240 (14%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
IT +N F A E+L + ++ I G+ G+VGP+G GKSTL KLL +++ P++
Sbjct: 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL--QRLYTPQHG 512
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA 282
VL+ ++ D + ++ + V L+E V L + + D + +
Sbjct: 513 QVLVDGVDLAIADPAWLRRQMG-----VVLQENV--LFSRSIRDNIALCNPGAPFEHVIH 565
Query: 283 ELYEKLQILGSDAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
A A A ++ L G+ E+ G + SGG R RI++ARAL P
Sbjct: 566 A-----------AKLAGAHDFISELPQGYNTEV-GEKGANLSGGQRQRIAIARALVGNPR 613
Query: 341 LLLLDEPTNHLDLRAVLWLEEYL---CRWKKTLVVVSHDRDFLNTV--CTEIIHLHDQKL 395
+L+ DE T+ LD + + + CR +T+++++H L+TV C II L ++
Sbjct: 614 ILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHR---LSTVRACDRIIVLEKGQI 669
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 9e-12
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 298 AQASKILAGLGFT--KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR- 354
A +K+ L E+ R SGG + R+ LARAL P LLLLDEP +D +
Sbjct: 108 ADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167
Query: 355 --AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398
+ L L R T++VV+HD + ++ L ++ +
Sbjct: 168 QEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 25/219 (11%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
L ++ IS G+ LVGP+G GKSTLLKL+ K +P + + + Q+V AI
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIY--KEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 241 AVVSAHEELVKLREEVA-SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQ 299
LR ++ Q+ + D N E +A E + + + +
Sbjct: 75 ----------YLRRKIGVVFQDFRLLP------DRN-VYENVAFALEVTGVPPREIRK-R 116
Query: 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD---LRAV 356
L +G + + + P + SGG + R+++ARA+ PT+L+ DEPT +LD +
Sbjct: 117 VPAALELVGLSHKHRALPAE-LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 357 LWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ L + + + T+VV +H ++ ++T +I L KL
Sbjct: 176 MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 59/209 (28%), Positives = 87/209 (41%), Gaps = 27/209 (12%)
Query: 195 GLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLRE 254
G+ G +G GKSTLL+ +A + P I + V D S + + + + L
Sbjct: 27 GIFGASGAGKSTLLRCIAGLEKPDGGTIVL----NGTVLFD-SRKKINLPPQQRKIGLVF 81
Query: 255 EVASLQNSTSVDGEEDGDDANDA-GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM 313
+ +L +V N A G K E ++L LG +
Sbjct: 82 QQYALFPHLNVR-------ENLAFGLKRKRNREDRI---------SVDELLDLLGLDH-L 124
Query: 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTL--- 370
R SGG + R++LARAL QP LLLLDEP + LD L L L + KK L
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 371 -VVVSHDRDFLNTVCTEIIHLHDQKLHFY 398
+ V+HD + I+ + D +L +
Sbjct: 185 VIFVTHDLSEAEYLADRIVVMEDGRLQYI 213
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 1e-11
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 23/195 (11%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-LRIGR------- 564
L D+ + I + I+GP+G+GKSTLL +L + + +++ K L G+
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 565 -YSQHFVDLLTMEETP---------VSYLLRLHPDQEGLSKQEAVRAKLGKFGL--PSHN 612
+ V ++ + P ++Y L+ H +E ++ V L K GL ++
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD 145
Query: 613 HL-TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG--GV 669
L +P ++LSGGQ+ R+ KP +LL+DEPT+ +D+ + A+ + E +
Sbjct: 146 RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAI 205
Query: 670 VLVSHDSRLISRVCD 684
V+VSH+ + ++RV D
Sbjct: 206 VIVSHNPQQVARVAD 220
|
Length = 257 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-11
Identities = 75/252 (29%), Positives = 113/252 (44%), Gaps = 52/252 (20%)
Query: 488 PTELTPPL---LQLIEVSFSY-----PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTL 539
+E +P L ++L ++F Y P E+F L+ + G RVA+VG +G+GKST+
Sbjct: 467 GSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLT-----LQPGQRVALVGGSGSGKSTI 521
Query: 540 LNLLAGDLSPTEGEV------RRSQKLRIGRYSQHFVDL------------LTMEET--P 579
L+AG P GE+ R + S VD LT+ + P
Sbjct: 522 AKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIP 581
Query: 580 VSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP-IAKLSGGQKARVVFTSISMSKP 638
+ L+R D + + ++ G + L A LSGGQ+ R+ + P
Sbjct: 582 DADLVRACKDAA---IHDVITSRPGGY----DAELAEGGANLSGGQRQRLEIARALVRNP 634
Query: 639 HILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLIS-RVCDDEERSEIWVVENG 697
IL+LDE T+ LD ++ + D L ++V+H RL + R CD EI V+E G
Sbjct: 635 SILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH--RLSTIRDCD-----EIIVLERG 687
Query: 698 -TVSRFPGTFEE 708
V R GT EE
Sbjct: 688 KVVQR--GTHEE 697
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
+ A ++L LG + + SGG + R+++ARAL P ++L DEPT +LD
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
Query: 354 ---RAVLWLEEYLCR-WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396
+ VL L L + KT+++V+HD + L +I L D K+
Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDPE-LAKYADRVIELKDGKIE 221
|
Length = 226 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 51/255 (20%)
Query: 166 ITIDNFSVA-ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
I + N S G + LK ++ I+ G+ ++GP+G GKSTLL+ L + P + ++
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLN-GLVD-PTSGEI 61
Query: 225 LLVEQEVVGDDRSAIQ------AVVSAHEELVK-----------LREEVASLQNSTSVDG 267
L ++ ++ ++ LV ++ ++ +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 268 EEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRM 327
+ED A DA E++ IL D A +AS + SGG +
Sbjct: 122 KEDKAQALDA-------LERVGIL--DKAYQRASTL------------------SGGQQQ 154
Query: 328 RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTV 383
R+++ARAL QP ++L DEP LD + + + L T++V H D
Sbjct: 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKY 214
Query: 384 CTEIIHLHDQKLHFY 398
II L ++ F
Sbjct: 215 ADRIIGLKAGRIVFD 229
|
Length = 258 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 57/230 (24%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV--LLVEQEVVGDDR 236
++L + + I G+ ++GP+G GKSTLL R I + I L+V+ V D +
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLL-----RCINKLEEITSGDLIVDGLKVNDPK 69
Query: 237 SAIQAVVSAHEELVKLREE-------------VASLQNSTSVDGEEDGDDANDAGEKLAE 283
+ + R+E + +L+N
Sbjct: 70 VDERLI----------RQEAGMVFQQFYLFPHLTALENV--------------------- 98
Query: 284 LYEKLQILGS--DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
++ L++ G+ + AE QA ++LA +G + P++ SGG + R+++ARAL V+P L
Sbjct: 99 MFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSE-LSGGQQQRVAIARALAVKPKL 157
Query: 342 LLLDEPTNHLD--LR-AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEII 388
+L DEPT+ LD LR VL + + L T+V+V+H+ F V + +I
Sbjct: 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLI 207
|
Length = 240 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 78/264 (29%), Positives = 114/264 (43%), Gaps = 40/264 (15%)
Query: 460 KGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIE---VSFSY-PNREDFKLSD 515
+ D ++ + V P+ L P L + VSF+Y P R L+
Sbjct: 228 QALTDMEKMFD---LLDVEAEVSDA-PDAPPLWPVRLGAVAFINVSFAYDPRRPI--LNG 281
Query: 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKLR--IGR 564
+ I +G VAIVG +GAGKST+L LL G + Q LR IG
Sbjct: 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341
Query: 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR-AKLGKF--GLPSHNHLTPIA--- 618
Q D + +T + PD A A++ F LP + T +
Sbjct: 342 VPQ---DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE-GYDTGVGERG 397
Query: 619 -KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSHD 675
KLSGG+K RV + P IL+LDE T+ LD + A+ AL E + G ++++H
Sbjct: 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH- 456
Query: 676 SRLISRVCDDEERSEIWVVENGTV 699
RL S + D + EI V++NG +
Sbjct: 457 -RL-STIIDAD---EIIVLDNGRI 475
|
Length = 497 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 66/242 (27%), Positives = 92/242 (38%), Gaps = 63/242 (26%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
++ VSF Y + F L DV I G +IVG NG+GKST+ L+ G GE
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 554 VRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLH-------PDQE--GLSKQEAVRAKLG 604
+ Y+ + E+ LR H PD + G + V
Sbjct: 66 I---------FYNNQAITDDNFEK------LRKHIGIVFQNPDNQFVGSIVKYDV----- 105
Query: 605 KFGLPSHNHLTPIAK------------------------LSGGQKARVVFTSISMSKPHI 640
FGL NH P + LSGGQK RV + P +
Sbjct: 106 AFGL--ENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163
Query: 641 LLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSE---IWVVENG 697
++LDE T+ LD + L D + + V H+ +IS D E E + V+ G
Sbjct: 164 IILDEATSMLDPDARQNLLDLVRK-----VKSEHNITIISITHDLSEAMEADHVIVMNKG 218
Query: 698 TV 699
TV
Sbjct: 219 TV 220
|
Length = 269 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 47/200 (23%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVRRSQKLRIGRYSQHF- 569
L V++ + G AI+GPNG+GKSTL + G TEGE+ F
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL-------------FD 66
Query: 570 -VDLLTME-----------------ETP---VSYLLRL-----HPDQEGLSK-QEAVRAK 602
D+L + E P S LR + L + + ++ K
Sbjct: 67 GEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEK 126
Query: 603 LGKFGL-PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661
GL SGG+K R + + +P + +LDEP + LD+ ++ +A+
Sbjct: 127 AELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186
Query: 662 LDEF---TGGVVLVSHDSRL 678
++ GV++++H RL
Sbjct: 187 INALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 3e-11
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRD 378
SGG R RI++ARAL P +L+LDE T+ LD + E L KT++V++H
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHR-- 154
Query: 379 FLNTV--CTEIIHLHDQK 394
L+T+ II L D +
Sbjct: 155 -LSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 29/217 (13%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ + A ++L + S+ + G+ + GP+G GKSTLLK++A + L
Sbjct: 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA---SLISPTSGTL 60
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
L E E V + R++V+ + ++ G+ D+ L
Sbjct: 61 LFEGEDVSTLKPEA------------YRQQVSYCAQTPALFGDTVEDN----------LI 98
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
QI A A +LA + + SGG + RI+L R L P +LLLD
Sbjct: 99 FPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158
Query: 346 EPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRD 378
E T+ LD +EE + R+ ++ ++HD+D
Sbjct: 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
|
Length = 223 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 61/213 (28%), Positives = 87/213 (40%), Gaps = 61/213 (28%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----------------- 555
L +V V I+ G +AI+G G+GK+T + L L P G +
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 556 ----------RSQKL--------RIGRYSQHFVDLLTMEET--------PVSYLLRLHPD 589
R +K+ R+G Q F + E+T PVS
Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ-FAEYQLFEQTIEKDIIFGPVSM------- 134
Query: 590 QEGLSKQEAV-RAK--LGKFGLP-SHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645
G+SK+EA RA + GL S+ +P LSGGQK RV I +P L+ DE
Sbjct: 135 --GVSKEEAKKRAAKYIELVGLDESYLQRSPFE-LSGGQKRRVALAGILAMEPDFLVFDE 191
Query: 646 PTNHLDMQSIDALADALDEFTGG---VVLVSHD 675
PT LD Q + + + D ++LV+HD
Sbjct: 192 PTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
|
Length = 305 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 50/211 (23%)
Query: 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244
S + GK +VG +G GKSTL +LL I P ++ Q+++ D A +
Sbjct: 35 SFTLERGKTLAVVGESGCGKSTLARLLTM--IETPTGGELYYQGQDLLKADPEAQKL--- 89
Query: 245 AHEELVKLREEV--------ASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI---LGS 293
LR+++ SL V L E L I L +
Sbjct: 90 -------LRQKIQIVFQNPYGSLNPRKKVG---------------QILEEPLLINTSLSA 127
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
+A ++A +G E R FSGG R RI++ARAL + P +++ DEP + LD+
Sbjct: 128 AERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
Query: 354 --RA-VLWL-----EEYLCRWKKTLVVVSHD 376
+A VL L +E + V +SHD
Sbjct: 188 SVQAQVLNLMMDLQQEL----GLSYVFISHD 214
|
Length = 327 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 511 FKLSDV------DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564
F+LSD + ++ G A VG NG+GKS L LAG+L GE R+SQ I R
Sbjct: 11 FRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE-RQSQFSHITR 69
Query: 565 YS----QHFV---------DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH 611
S Q V D+L+ E Q+ + +FG+
Sbjct: 70 LSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTA-EIIQDEVKDPARCEQLAQQFGI--- 125
Query: 612 NHL--TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF-TGG 668
L LS G+ + + MS+P +L+LDEP + LD+ S LA+ L G
Sbjct: 126 TALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185
Query: 669 VVLV 672
+ LV
Sbjct: 186 ITLV 189
|
Length = 490 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 30/227 (13%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV------ 554
V+FSY + + L D++ I G VAIVGP GAGK+TL+NLL P +G++
Sbjct: 8 VNFSY-DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID 66
Query: 555 -----RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPD-QEGLSKQEAVRAKLGKFG- 607
R+S + IG Q D T + + P+ + + A A F
Sbjct: 67 IRDISRKSLRSMIGVVLQ---DTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIM 123
Query: 608 -LPS--HNHLTPIAK-LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALD 663
LP+ L LS G++ + + P IL+LDE T+++D ++ + +AL+
Sbjct: 124 KLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183
Query: 664 EFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
+ G ++++H RL S + + + +I V+++G + GT +E
Sbjct: 184 KLMKGRTSIIIAH--RL-STIKNAD---KILVLDDGKIIE-EGTHDE 223
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 53/235 (22%)
Query: 492 TPPLLQL--IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKS----TLLNLLAG 545
T PLL + + V+F + + I+ G +A+VG +G+GKS ++L LL
Sbjct: 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62
Query: 546 D----------------LSPTEGEVRRSQKLRIGRYSQH-FVDL--LTMEETPVSYLLRL 586
L+ +E ++R + +IG Q L L ++ +LRL
Sbjct: 63 PAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL 122
Query: 587 HPDQEGLSKQEA---VRAKLGKFGLP-------SHNHLTPIAKLSGGQKARVVFTSISMS 636
H GLS+ A L G+P ++ H +LSGGQ+ RV+ I+M+
Sbjct: 123 H---RGLSRAAARARALELLELVGIPEPEKRLDAYPH-----ELSGGQRQRVM---IAMA 171
Query: 637 ---KPHILLLDEPTNHLD----MQSIDALADALDEFTGGVVLVSHDSRLISRVCD 684
+P +L+ DEPT LD Q +D L + E ++ ++HD ++ + D
Sbjct: 172 LANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFAD 226
|
Length = 534 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 4e-11
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 287 KLQILGSDAAEAQASKILA--GL-GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
+L+ A +A ++L GL GF + P SGG R R+++ARAL +P LLL
Sbjct: 98 ELRGKSKAEARERAKELLELVGLAGFEDK---YP-HQLSGGMRQRVAIARALATRPKLLL 153
Query: 344 LDEPTNHLD--LRAVL--WLEEYLCRWKKTLVVVSHD 376
LDEP LD R L L +KT+++V+HD
Sbjct: 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 4e-11
Identities = 62/223 (27%), Positives = 90/223 (40%), Gaps = 59/223 (26%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
+LK S+ I G+ +VG +G GKSTLL LL P + G S
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFN-------GQSLSK 71
Query: 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE------------ 286
+ + E KLR + KL +Y+
Sbjct: 72 LSS-----NERAKLRNK------------------------KLGFIYQFHHLLPDFTALE 102
Query: 287 ----KLQILGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
L I EA+ A ++L +G + RP++ SGG R R+++ARAL QP+
Sbjct: 103 NVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE-LSGGERQRVAIARALVNQPS 161
Query: 341 LLLLDEPTNHLDLR---AVLWLEEYLCRWKKT-LVVVSHDRDF 379
L+L DEPT +LD + L L R T +VV+HD +
Sbjct: 162 LVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 73/256 (28%), Positives = 108/256 (42%), Gaps = 56/256 (21%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTL---LNLL----AGDLS 548
+QL ++ Y + L D+ + G + ++GP+GAGKS+L LNLL +G L+
Sbjct: 3 IQLNGINCFYGAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 549 -----------PTEGEVRRSQKLRIGRYSQ------HFVDLLTMEETPVSYLLRLHPDQE 591
P++ +R ++ +G Q H + E P L
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRR-NVGMVFQQYNLWPHLTVQENLIEAPCRVL-------- 111
Query: 592 GLSKQEAVRAKLGKFGLPSHNHLTPIA-----KLSGGQKARVVFTSISMSKPHILLLDEP 646
GLSK +A+ L L P A LSGGQ+ RV M +P +LL DEP
Sbjct: 112 GLSKDQALARAEK---LLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 647 TNHLDMQSIDALADALDEFTG-GV--VLVSHD----SRLISRVCDDEERSEIWVVENGTV 699
T LD + + + E G+ V+V+H+ + SRV E +VE G
Sbjct: 169 TAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGH---IVEQGDA 225
Query: 700 SRF--PGTFEEYKEDL 713
S F P T E +K L
Sbjct: 226 SCFTEPQT-EAFKNYL 240
|
Length = 242 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 4e-11
Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 43/271 (15%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I I+NFS K+ +K+ +++I + ++GP+G GK+TLL+ + + +I
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN----RMNDHIPGF 59
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVA-----------SLQNSTSVDGEEDGDDA 274
VE ++ + + ++ + R++V S+ ++ + G +
Sbjct: 60 RVEGKIYFKGQDIYDPQL----DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKS 115
Query: 275 NDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARA 334
KL + E+ + K A K +P SGG + R+ +ARA
Sbjct: 116 K---HKLDRIVEE------------SLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160
Query: 335 LFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392
L V+P ++LLDEPT+ LD A +E+ L T+V+V+H+ + I + D
Sbjct: 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN-------IGQAIRIAD 213
Query: 393 QKLHFYRGNFDDFESGYEQRRKEMNKKFEIY 423
YRG ++ E + NK E Y
Sbjct: 214 YIAFMYRGELIEYGPTREIVERPKNKLTEEY 244
|
Length = 250 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 38/225 (16%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV--------RRSQKL---- 560
L +V++ I+ G V ++G G+GKSTL+ L G L PT G++ + KL
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 561 -RIG---RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNH 613
++G +Y ++ + EET + + P GLS++E V+ + GL ++
Sbjct: 83 KKVGLVFQYPEYQL----FEET-IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY 137
Query: 614 L--TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTG 667
+P +LSGGQK RV + +P IL+LDEPT LD + D + + + E+
Sbjct: 138 KDKSPF-ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNM 196
Query: 668 GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE-YKE 711
++LVSH ++++ D I V+ G GT E +KE
Sbjct: 197 TIILVSHSMEDVAKLAD-----RIIVMNKGKCE-LQGTPREVFKE 235
|
Length = 287 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 58/200 (29%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 499 IEV---SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
IEV F Y + L + + I G++ A++GPNGAGKSTLL L G P G V+
Sbjct: 5 IEVEDLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 556 --------RSQKL---RIGRYSQHFVDLL---TMEETPVSYLLRLHPDQEGLSKQEA--- 598
++K ++G Q D + T+ + + P GL K E
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD-----VAFGPVNMGLDKDEVERR 118
Query: 599 VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
V L + P LS GQK RV + P +++LDEP +LD + + L
Sbjct: 119 VEEALKAVRMWDFRDKPP-YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 659 ADALDEFTGG---VVLVSHD 675
+ LD V++ +HD
Sbjct: 178 MEILDRLHNQGKTVIVATHD 197
|
Length = 274 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 66/249 (26%), Positives = 106/249 (42%), Gaps = 42/249 (16%)
Query: 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
+ P L + ++P + L D+ G A++G NGAGKSTLL +L+G+ P
Sbjct: 1 SSPYLSFDGIGKTFPGVK--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA 58
Query: 552 GEVR---RSQKLRIGRYS---------Q--HFVDLLTMEETPVSYLLRLHPDQEGLSKQE 597
G + + + + Q H V +T+ E YL +L P + G+ +
Sbjct: 59 GSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAEN--LYLGQL-PHKGGIVNRR 115
Query: 598 A----VRAKLGKFGL---PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHL 650
R +L G+ P TP+ LS GQ+ V ++ DEPT+ L
Sbjct: 116 LLNYEAREQLEHLGVDIDPD----TPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL 171
Query: 651 DMQSIDALADALDEF--TGGVVL-VSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707
+ I+ L + E G V+L VSH I +CD I V ++G R+ TF+
Sbjct: 172 SAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCD-----AITVFKDG---RYVATFD 223
Query: 708 EYKEDLQRE 716
+ + R+
Sbjct: 224 DM-AQVDRD 231
|
Length = 501 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 43/230 (18%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
L+QL +V+ E +L + + G + +VGPNGAGKSTLL +AG ++ G +
Sbjct: 3 LMQLNDVA------ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGSGSI 55
Query: 555 RRSQKLRIGRYSQHFVDL----LTMEETPVSYL-----LRLH-PDQEGLSKQEAVRAKLG 604
+ + + + +S + L+ ++TP + L LH PD+ V L
Sbjct: 56 QFAGQ-PLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALA 114
Query: 605 ---KFGLPSHNHLTPIAKLSGGQKARV----VFTSIS-MSKP--HILLLDEPTNHLDMQS 654
K G ++ +LSGG+ RV V I+ + P +LLLDEP N LD+
Sbjct: 115 LDDKLGRSTN-------QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ 167
Query: 655 IDALADALDEFTG---GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701
AL L +V+ SHD R W+++ G +
Sbjct: 168 QSALDRLLSALCQQGLAIVMSSHDLNHTLRHAH-----RAWLLKRGKLLA 212
|
Length = 248 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 6e-11
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 288 LQILGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
L++ G AEA+ A ++L +G + P SGG R R++LARAL V P +LLLD
Sbjct: 98 LELQGVPKAEARERAEELLELVGLSGFENAYP-HQLSGGMRQRVALARALAVDPDVLLLD 156
Query: 346 EPTNHLD--LRAVL--WLEEYLCRWKKTLVVVSHD 376
EP + LD R L L + KT+++V+HD
Sbjct: 157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 20/222 (9%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
+L + S+ I G+ GL+G +G GKSTL +LL + P V Q++ DR
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGT--VSFRGQDLYQLDRK 81
Query: 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAE 297
+A R+ Q+S S + + E L L +
Sbjct: 82 QRRAF---------RRDVQLVFQDSPSAVNPR-----MTVRQIIGEPLRHLTSLDESEQK 127
Query: 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL---- 353
A+ +++L +G E + + SGG RI++ARAL V+P L++LDE ++LD+
Sbjct: 128 ARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187
Query: 354 RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ L + + + ++HD + + C + + ++
Sbjct: 188 VILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 36/231 (15%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---- 555
+VSFSY N + DV G VAIVGP GAGKSTL+NLL P G +
Sbjct: 339 DVSFSYDNSRQ-GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397
Query: 556 --RS---QKLR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQE----AVRAKLG 604
R+ LR I F D + + +R+ + + +E A RA+
Sbjct: 398 DIRTVTRASLRRNIAVV---FQDAGLFNRS-IEDNIRV--GRPDATDEEMRAAAERAQAH 451
Query: 605 KFGLPSHNHLTPIA-----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA 659
F + + +LSGG++ R+ + P IL+LDE T+ LD+++ +
Sbjct: 452 DFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK 511
Query: 660 DALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
ALDE G +++H RL S V I V +NG V G+F+E
Sbjct: 512 AALDELMKGRTTFIIAH--RL-STV---RNADRILVFDNGRVVE-SGSFDE 555
|
Length = 588 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 6e-11
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 34/212 (16%)
Query: 486 PEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545
+ + PLL++ ++ S+ + + DV + I G A++G +G GKSTLL +LAG
Sbjct: 10 AKTRKALTPLLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67
Query: 546 DLSPTEGEV-------------RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592
PT G++ +R + Y+ +T+E+ +++ L+ Q+
Sbjct: 68 FEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA--LFPHMTVEQN-IAFGLK----QDK 120
Query: 593 LSKQEAVRAKLGKFGLPSHNHLTPIAK-----LSGGQKARVVFTSISMSKPHILLLDEPT 647
L K E + +++ + + H+ AK LSGGQ+ RV +P +LLLDEP
Sbjct: 121 LPKAE-IASRVNE--MLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177
Query: 648 NHLDMQSIDAL----ADALDEFTGGVVLVSHD 675
LD + D + D L+ V+V+HD
Sbjct: 178 GALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209
|
Length = 377 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 7e-11
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDR 377
S SGG R ++LARAL P +LLLDEPT+ +D R+ ++ L RW KTLV+V+H
Sbjct: 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRT 660
Query: 378 DFLNTVCTEIIHLHDQKL 395
L+ V II + + ++
Sbjct: 661 SLLDLV-DRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 7e-11
Identities = 58/202 (28%), Positives = 82/202 (40%), Gaps = 38/202 (18%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L +V + ++ G V + GP+G+GKSTLL L + P EG++ R+ +VDL
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV-------RHEGEWVDL 79
Query: 573 LTMEETP-----------VSYLLRLHPDQEGL---------------SKQEAVRAKLGKF 606
+T E VS LR+ P L + L +
Sbjct: 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRL 139
Query: 607 GLPSHN-HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665
LP L P A SGG++ RV + ILLLDEPT LD + + + + E
Sbjct: 140 NLPERLWSLAP-ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198
Query: 666 TG-GVVLVS--HDSRLISRVCD 684
G LV HD + V D
Sbjct: 199 KARGAALVGIFHDEEVREAVAD 220
|
Length = 235 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 7e-11
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 26/192 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-------------RRSQK 559
++ V + + G V ++GPNGAGK+T ++ G + P G++ +R++
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR- 74
Query: 560 LRIGRYSQH---FVDLLTMEETPVSYL-LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLT 615
L IG Q F LT+EE ++ L +R +E K E + L +F + +H +
Sbjct: 75 LGIGYLPQEASIFRK-LTVEENILAVLEIRGLSKKEREEKLEEL---LEEFHI-THLRKS 129
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALADALDEFTGGVVLV 672
+ LSGG++ RV + P LLLDEP +D +Q I + L + GV++
Sbjct: 130 KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLIT 189
Query: 673 SHDSRLISRVCD 684
H+ R + D
Sbjct: 190 DHNVRETLSITD 201
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 38/245 (15%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I + + + + +L + + G+ ++G +G GKSTLL+L+ P I +
Sbjct: 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68
Query: 226 LVE-QEVVGDDRSAIQ---AVVSAHEEL---VKLREEVA-SLQNSTSVDGEEDGDDANDA 277
+ ++ ++ I+ V+ L + + E VA L+ T +
Sbjct: 69 GEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESL-------- 120
Query: 278 GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337
+L KL+++G A A + E+ G G R R++LARA+ +
Sbjct: 121 IRELV--LMKLELVGLRGAAADL--------YPSELSG--------GMRKRVALARAIAL 162
Query: 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTL----VVVSHDRDFLNTVCTEIIHLHDQ 393
P LL LDEPT+ LD + ++E + L ++V+HD D L T+ + L D
Sbjct: 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADG 222
Query: 394 KLHFY 398
K+
Sbjct: 223 KVIAE 227
|
Length = 263 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 38/233 (16%)
Query: 166 ITIDNFSVA--ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
+ + + S++ + + L+ S+ I+ G+ ++GP+G GK+TLL L+A P +I
Sbjct: 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ 63
Query: 224 VLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAE 283
+ E G +R VV +E L+ +D G
Sbjct: 64 LNGRRIEGPGAER----GVVFQNEALLPWL---------NVIDNVAFG------------ 98
Query: 284 LYEKLQILGSDAAE--AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
LQ+ G + A+ A ++LA +G + SGG R R+ +ARAL V+P L
Sbjct: 99 ----LQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQ-LSGGMRQRVGIARALAVEPQL 153
Query: 342 LLLDEPTNHLDLRAVLWLEEYLCR-WKKT---LVVVSHDRDFLNTVCTEIIHL 390
LLLDEP LD ++E L W++T +++++HD + + T ++ L
Sbjct: 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVL 206
|
Length = 259 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 38/193 (19%)
Query: 170 NFSVAARGKEL-LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVE 228
NF+ AR + L ++ + G+ LVGP+G GKSTL +LL + P++ +LL
Sbjct: 344 NFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDG 401
Query: 229 QEVVGDDRSAIQAVVSAHEELVKLREEVASLQNST--SVDGEED---GD-DANDAGEKLA 282
++ R A + A LV Q+ + E+ G DA D
Sbjct: 402 VDL----RQLDPAELRARMALVP--------QDPVLFAASVMENIRYGRPDATDE----- 444
Query: 283 ELYEKLQILGSDAAE-AQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
E+ AA A A + ++ L G+ + G + SGG R RI++ARA+
Sbjct: 445 EVE--------AAARAAHAHEFISALPEGYDTYL-GERGVTLSGGQRQRIAIARAILKDA 495
Query: 340 TLLLLDEPTNHLD 352
+LLLDE T+ LD
Sbjct: 496 PILLLDEATSALD 508
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-10
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 26/187 (13%)
Query: 487 EPTELTPPL--LQLIEVSFSYP-NREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL 543
+ TEL + + +VS+SY LSD+ + I M ++ IVG +G+GKSTL LL
Sbjct: 463 KRTELNNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLL 520
Query: 544 AGDLSPTEGEVRRSQKLRIGRYSQH----FVDLLTMEETPVSY---LLR--LHPDQEGLS 594
G GE+ + + +H F++ L E P + +L L +E +S
Sbjct: 521 VGFFQARSGEILLNGFS-LKDIDRHTLRQFINYLPQE--PYIFSGSILENLLLGAKENVS 577
Query: 595 KQEAVRA--------KLGKFGLPSHNHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDE 645
+ E A + L L+ +SGGQK R+ ++ +L+LDE
Sbjct: 578 QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637
Query: 646 PTNHLDM 652
T++LD
Sbjct: 638 STSNLDT 644
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 29/228 (12%)
Query: 469 LPEAPKKWRDYSVEFHFPEPTE--LTPPLLQLIEVSFSYPNREDFKLSDVDVG-IDMGTR 525
LPE ++R +EF P + L++ ++ +Y DFKL +V+ G I G
Sbjct: 314 LPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTY---GDFKL-EVEEGEIYDGEV 369
Query: 526 VAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLR 585
+ I+GPNG GK+T + LLAG + P EG + L++ Q+ + + V LLR
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGSE---EDLKVSYKPQY---ISPDYDGTVEDLLR 423
Query: 586 L-HPDQEGLS--KQEAVRAKLGKFGLPSHNHL-TPIAKLSGGQKARVVFTSISMSKP-HI 640
G S K E V+ L + L P+ +LSGG+ RV + ++S+ +
Sbjct: 424 SAIRSAFGSSYFKTEIVK------PLNLEDLLERPVDELSGGELQRVAI-AAALSREADL 476
Query: 641 LLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCD 684
LLDEP+ +LD++ +A + F ++V HD +I V D
Sbjct: 477 YLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSD 524
|
Length = 591 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 49/208 (23%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSP---TEGEVRRSQKLRIGR-- 564
L ++++ I A++GP+G GKSTLL N + DL P EG+V L G+
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM-NDLVPGVRIEGKV-----LFDGQDI 70
Query: 565 YSQHFVDLLTMEE---------TP--------VSYLLRLHPDQEGLSKQEAVRAKLGKFG 607
Y + +D++ + P ++Y RLH ++ E V L K
Sbjct: 71 YDK-KIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAA 129
Query: 608 LP-------SHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDA 657
L + L LSGGQ+ R+ +P +LLLDEPT+ LD I+
Sbjct: 130 LWDEVKDRLHDSALG----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE 185
Query: 658 LADAL-DEFTGGVVLVSHDSRLISRVCD 684
L L ++T +V+V+H+ + +R+ D
Sbjct: 186 LIQELKKKYT--IVIVTHNMQQAARISD 211
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 1e-10
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 22/218 (10%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I ++N S +++L+ S+ I K ++GP+G GKST LK L ++ L
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL--------NRMNEL 59
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
E V G Q + L +LR +V+ + ++ D+ G K+
Sbjct: 60 ESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVA-YGVKIVGWR 118
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS---FSGGWRMRISLARALFVQPTLL 342
KL+I + + + + E++ + KS SGG + R+ +ARAL V+P +L
Sbjct: 119 PKLEIDDIVESALKDADLW------DEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVL 172
Query: 343 LLDEPTNHLDLRAVLWLEEYL----CRWKKTLVVVSHD 376
L+DEP LD A + +E + R + T+V+VSH+
Sbjct: 173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
|
Length = 261 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 1e-10
Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 27/219 (12%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I ++N ++ K+ LK+ S++I L+GP+G GKST ++ L R + KN +
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-RMNDLIKNCRI- 70
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTS------VDGEEDGDDANDAGE 279
E +V + + V V+LR+ V + + D G + A +
Sbjct: 71 --EGKVSIEGEDIYEPDVDV----VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANK 124
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
K D A + A T + P S SGG + R+ +AR L V+P
Sbjct: 125 K-----------DLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKP 173
Query: 340 TLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
++L DEPT+ LD + +E+ + KK T+V+V+H+
Sbjct: 174 KIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 1e-10
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 19/204 (9%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
K+ +K+ ++ + G L+GP+G GK+T L+ + + L V G
Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAI--------NRMHDLTPGARVTGRILL 68
Query: 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAE 297
Q + + V +R V + + D AG KLA + ++ ++ + AE
Sbjct: 69 DGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLM--EVAE 126
Query: 298 AQASKILAGLGFTKEMQGR---PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
+ L G E++ R P SGG + R+ +ARAL V+P +LL+DEPT+ LD
Sbjct: 127 ----RSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182
Query: 355 AVLWLEEYLCRWKK--TLVVVSHD 376
+ +E+ + KK T+++V+H+
Sbjct: 183 STARIEDLMTDLKKVTTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 32/234 (13%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
GK+ LK+ ++ I+ G+ ++GP+G GKSTLL+ + ++ P + +LL ++
Sbjct: 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI--NRLVEPSSGSILLEGTDITKLRG 71
Query: 237 SAIQ------AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI 290
++ ++ H L++ R V L+N +L +
Sbjct: 72 KKLRKLRRRIGMIFQHYNLIE-RLTV--LENVLH--------------GRLGYKPTWRSL 114
Query: 291 LG--SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
LG S+ + +A L +G + + SGG + R+++ARAL QP L+L DEP
Sbjct: 115 LGRFSEEDKERALSALERVGL-ADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173
Query: 349 NHLDLRAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398
LD + + +YL R K T+++ H D I+ L ++ F
Sbjct: 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 66/243 (27%), Positives = 100/243 (41%), Gaps = 61/243 (25%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL 560
+ F Y LS++++ I G + IVGP+G+GKSTL LL Q+L
Sbjct: 461 IRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL--------------QRL 506
Query: 561 RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK--------LGKFGLP--- 609
++ Q VD + + ++L R Q G+ QE V L G P
Sbjct: 507 YTPQHGQVLVDGVDLAIADPAWLRR----QMGVVLQENVLFSRSIRDNIALCNPGAPFEH 562
Query: 610 -----------------SHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTN 648
+ T + A LSGGQ+ R+ + P IL+ DE T+
Sbjct: 563 VIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATS 622
Query: 649 HLDMQSIDALADALDEFTGG--VVLVSHDSRLIS-RVCDDEERSEIWVVENGTVSRFPGT 705
LD +S + + E G V++++H RL + R CD I V+E G ++ G
Sbjct: 623 ALDYESEALIMRNMREICRGRTVIIIAH--RLSTVRACD-----RIIVLEKGQIAE-SGR 674
Query: 706 FEE 708
EE
Sbjct: 675 HEE 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 51/252 (20%)
Query: 486 PEPTELTPPLLQLIEVSFSYPNREDF---------KLSDVDVGIDMGTRVAIVGPNGAGK 536
P E P LL++ ++ +P + F + + + + G + +VG +G+GK
Sbjct: 267 PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326
Query: 537 STL-LNLLAGDLSPTEGEVR-RSQKLRIGRYSQH------------FVD-------LLTM 575
STL L LL L P++GE+R Q I S+ F D +T+
Sbjct: 327 STLGLALLR--LIPSQGEIRFDGQ--DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTV 382
Query: 576 EETPVSYLLRLHPDQEGLSKQE---AVRAKLGKFGL-PSHNHLTPIAKLSGGQKARVVFT 631
+ + LR+H + LS E V L + GL P+ + P + SGGQ+ R+
Sbjct: 383 GQI-IEEGLRVH--EPKLSAAERDQRVIEALEEVGLDPATRNRYP-HEFSGGQRQRIAIA 438
Query: 632 SISMSKPHILLLDEPTNHLDM----QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEE 687
+ KP ++LLDEPT+ LD Q +D L D + + +SHD ++ +C
Sbjct: 439 RALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHR-- 496
Query: 688 RSEIWVVENGTV 699
+ V+ +G +
Sbjct: 497 ---VIVMRDGKI 505
|
Length = 534 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 2e-10
Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 22/216 (10%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI---PVPKNI 222
I I + V+ E+L ++ I L+GP+G GKSTLL++ R I P +
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN-RLIELYPEAR-- 60
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS-LQNSTSVDGEEDGDDANDAGEKL 281
V EV D + + V V++ ++ + + N + + G N +
Sbjct: 61 ----VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSK 116
Query: 282 AELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
EL E+++ A + K+ P SGG + R+ +ARAL QP +
Sbjct: 117 KELQERVR---------WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEV 167
Query: 342 LLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
LL DEPT +LD +E KK T+V+V+H
Sbjct: 168 LLADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 62/212 (29%), Positives = 91/212 (42%), Gaps = 50/212 (23%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL----NLLAGDLSPTE----------------G 552
L VD+ I G VA++GP+G+GKSTLL L+ GD S
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 553 EVRRSQKLRIGRYSQHF--VDLLTMEE---------TP-----VSYLLRLHPDQEGLSKQ 596
++R+S + G Q F V+ L++ E TP S+ R KQ
Sbjct: 80 DIRKS-RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ-------KQ 131
Query: 597 EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
A++A L + G+ H ++ LSGGQ+ RV M + ++L DEP LD +S
Sbjct: 132 RALQA-LTRVGMVHFAH-QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESAR 189
Query: 657 ALADALDEF--TGG--VVLVSHDSRLISRVCD 684
+ D L + G VV+ H R C+
Sbjct: 190 IVMDTLRDINQNDGITVVVTLHQVDYALRYCE 221
|
Length = 262 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 25/227 (11%)
Query: 507 NREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYS 566
N+ F L D+ + G + +VG NG+GKSTL N++ G LSPT G+V R+ ++ + S
Sbjct: 34 NKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAIS 93
Query: 567 QHFVDLLT-MEETPVSYLLRLHPDQEGLSKQE--AVRAKLGKFGLPSHNHLTPIAKLSGG 623
LT +E L G ++E A+ K+ +F P+ K S G
Sbjct: 94 AGLSGQLTGIENIEFKMLCM------GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSG 147
Query: 624 QKARVVFTSISMS-KPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSHDSRLI 679
+A++ F SI+++ P IL++DE + D D + EF + VSH+ +
Sbjct: 148 MRAKLGF-SINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQV 206
Query: 680 SRVCDDEERSEIWVVENGTVSRFPG------TFEEYKEDLQREIKAE 720
+ C ++I +E G + + +E + D +++ KAE
Sbjct: 207 RQFC-----TKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAE 248
|
Length = 264 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 62/235 (26%), Positives = 101/235 (42%), Gaps = 45/235 (19%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
V+ Y + ++++++ I G + ++GP+G+GK+T + ++ + PT GE+
Sbjct: 6 VTKRYGGGK-KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED 64
Query: 556 -RSQ---KLR--IGRYSQ------HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKL 603
R Q +LR IG Q H T+EE L +E +E L
Sbjct: 65 IREQDPVELRRKIGYVIQQIGLFPHM----TVEENIALVPKLLKWPKE--KIRERADELL 118
Query: 604 GKFGLPSHNHLT--PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661
GL P +LSGGQ+ RV + P +LL+DEP LD + D L +
Sbjct: 119 ALVGLDPAEFADRYP-HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE 177
Query: 662 L----DEFTGGVVLVSHDS----RLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
E +V V+HD RL R+ +++NG + + GT +E
Sbjct: 178 FKRLQQELGKTIVFVTHDIDEAFRLADRIA---------IMKNGEIVQV-GTPDE 222
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-10
Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 65/235 (27%)
Query: 166 ITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
IT ++ F G +L + S+RI G+ G+VG +G GKSTL KL+ ++ VP+N
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLI--QRFYVPENGR 58
Query: 224 VLL-------------------VEQEVVGDDRSAIQAVVSAHEELVKLR-EEVASLQNST 263
VL+ V QE V +RS + A + R E A L
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLA--- 115
Query: 264 SVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323
A+D +L E Y+ I+G A SG
Sbjct: 116 ---------GAHDFISELPEGYD--TIVGEQGA-----------------------GLSG 141
Query: 324 GWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSH 375
G R RI++ARAL P +L+ DE T+ LD A++ +C +T+++++H
Sbjct: 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAH 195
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 23/181 (12%)
Query: 494 PLLQLIEVSFSYPNREDF-------KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546
LL++ +S ++ R + V + G +AI+G NG+GKSTL +LAG
Sbjct: 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62
Query: 547 LSPTEGEVR-RSQKLRIGRYSQHFVDLLTMEETPVSYL-------------LRLHPDQEG 592
+ PT GE+ L G YS + + + P + L LRL+ D E
Sbjct: 63 IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEP 122
Query: 593 LSKQEAVRAKLGKFGL-PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
+++ + L GL P H + P L+ GQK RV + +P I++ DE LD
Sbjct: 123 EQRRKQIFETLRMVGLLPDHANYYP-HMLAPGQKQRVALARALILRPKIIIADEALASLD 181
Query: 652 M 652
M
Sbjct: 182 M 182
|
Length = 267 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHDRDF 379
SGG R ++LARAL P +LLLDEPT+ +D+ + L+E L + KTL++++H
Sbjct: 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL 201
Query: 380 LNTV 383
L+ V
Sbjct: 202 LDLV 205
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 54/193 (27%), Positives = 75/193 (38%), Gaps = 30/193 (15%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ + S + L S + G+ L+GPNG GKSTL LL ++ V + +
Sbjct: 2 LEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLT--RLYVAQEGQI- 58
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGD---DANDAGEKLA 282
V G D L Q T D D N
Sbjct: 59 ----SVAGHDLR--------RAPRAALARLGVVFQQPTL-----DLDLSVRQN------L 95
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
+ L L A A+ +++LA LG E + +GG R R+ +ARAL +P LL
Sbjct: 96 RYHAALHGLSRAEARARIAELLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALL 154
Query: 343 LLDEPTNHLDLRA 355
LLDEPT LD +
Sbjct: 155 LLDEPTVGLDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 56/258 (21%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
ITI+N S + K +L S+ I G ++GPNG GKSTLL +++ R + K+ +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLL--KKDSGEI 58
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVD--------------GEEDG 271
++ + S A ++L L++E T D +ED
Sbjct: 59 TIDGLELTSTPSKELA-----KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR 113
Query: 272 DDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331
N+A E Y L+ ++ R SGG R R +
Sbjct: 114 RIINEAIE-----YLHLE----------------------DLSDRYLDELSGGQRQRAFI 146
Query: 332 ARALFVQPT-LLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTE 386
A + Q T +LLDEP N+LD++ + + + L R KT+VVV HD +F +
Sbjct: 147 A-MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDH 205
Query: 387 IIHLHDQKLHFYRGNFDD 404
I+ L + K+ +G+ D+
Sbjct: 206 IVALKNGKV-VKQGSPDE 222
|
Length = 252 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 31/231 (13%)
Query: 151 SVLEGQDDADANVKDITID--NFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLL 208
+ E + ++ + ID S + K ++ S ++ G+ +GL+GPNG GKST+
Sbjct: 25 GISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIA 84
Query: 209 KLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGE 268
+++ P I VL V V R A +A + + L E +N V G
Sbjct: 85 RMILGMTSPDAGKITVLGVP--VPARARLA-RARIGVVPQFDNLDLEFTVRENLL-VFGR 140
Query: 269 EDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMR 328
G + + L E ++ E++A ++ L SGG + R
Sbjct: 141 YFGMSTREIEAVIPSLLEFARL------ESKADARVSDL--------------SGGMKRR 180
Query: 329 ISLARALFVQPTLLLLDEPTNHLD--LRAVLW--LEEYLCRWKKTLVVVSH 375
++LARAL P LL+LDEPT LD R ++W L L R KT+++ +H
Sbjct: 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 37/210 (17%)
Query: 494 PLLQL--IEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT 550
P+L L + VSF + FK L+D+ + +D G I+GPNGAGK+T+++++ G P
Sbjct: 1 PILYLEGLSVSF-----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD 55
Query: 551 EGEVRRSQK------------LRIGRYSQH---FVDLLTMEETPVSY--------LLRLH 587
EG V IGR Q F +L E ++ L
Sbjct: 56 EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFR 115
Query: 588 PDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647
E +++ + L GL LS GQK + + M P +LLLDEP
Sbjct: 116 LSAE---EKDRIEEVLETIGLADEAD-RLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171
Query: 648 NHLDMQSIDALADALDEFTGG--VVLVSHD 675
+ + + A+ L G VV+V HD
Sbjct: 172 AGMTDEETEKTAELLKSLAGKHSVVVVEHD 201
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 53/170 (31%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 528 IVGPNGAGKSTLLNLLAGDLSPTEGEV--------RRSQKLR-IGRYSQHFVDL--LTME 576
++GP+G GK+TLL LLAG P G + LR I Q + +T+E
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 577 ETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633
E V++ L+ + + E V L L P +LSGGQ+ RV
Sbjct: 61 EN-VAFGLK----MRKVPRAEIKPRVLEALRLVQLEEFADRKPH-QLSGGQQQRVALARA 114
Query: 634 SMSKPHILLLDEPTNHLD------MQSIDALADALDEFTGGVVLVSHDSR 677
+ KP ILLLDEP + LD MQ L ++ V V+HD
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQL--ELKTIQEQLGITFVFVTHDQE 162
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 3e-10
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 496 LQLIEVSFSYPNRED---FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
+ + + SF++ + E F L D+++ + G VAIVGP G+GKS+LL+ L G+L G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 553 EV 554
V
Sbjct: 61 SV 62
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR---------SQKLRIG 563
L D+ + + G V ++GP+G GK+TLL ++AG T G + + QK G
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79
Query: 564 RYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNHLTPIA 618
Q + LT+ + ++Y L+ G+ + E V L GLP P
Sbjct: 80 IVFQSYALFPNLTVADN-IAYGLK----NRGMGRAEVAERVAELLDLVGLPGSERKYP-G 133
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
+LSGGQ+ RV + P +LLLDEP + LD
Sbjct: 134 QLSGGQQQRVALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 4e-10
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR------------SQKL 560
L D+ + I+ G +A++G +G GK+TLL +AG + G R K
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA-AGLTGRIAIADRDLTHAPPHKR 79
Query: 561 RIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA 618
+ Q++ L +E+ V++ LR + + A L GL P A
Sbjct: 80 GLALLFQNYALFPHLKVEDN-VAFGLRAQKMPKADIAERVADA-LKLVGLGDAAAHLP-A 136
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ-------SIDALADALDEFTGGVVL 671
+LSGG + R+ +P +LLLDEP + LD I AL + L E T ++
Sbjct: 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT--ILC 194
Query: 672 VSHD 675
V+HD
Sbjct: 195 VTHD 198
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 64/235 (27%)
Query: 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
PLL + ++ Y R+ DV + G + IVG +G+GK+TLLN L+ L+P
Sbjct: 3 DQPLLSVRGLTKLYGPRKGC--RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA 60
Query: 552 GEVR---RSQKLRIGRYSQHFVDLLTMEETPVSYLLRL-------HPDQEGLSKQEAVRA 601
GEV R +LR DL + E LLR HP GL Q +
Sbjct: 61 GEVHYRMRDGQLR---------DLYALSEAERRRLLRTEWGFVHQHPRD-GLRMQVSAGG 110
Query: 602 KLGK----FGLPSHNHLTPIAK-------------------LSGG-----QKARVVFTSI 633
+G+ G + + A SGG Q AR + T
Sbjct: 111 NIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTH- 169
Query: 634 SMSKPHILLLDEPTNHLDMQSIDA-LADAL----DEFTGGVVLVSHD---SRLIS 680
P ++ +DEPT LD+ S+ A L D L E VV+V+HD +RL++
Sbjct: 170 ----PRLVFMDEPTGGLDV-SVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA 219
|
Length = 258 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 6e-10
Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
+ S+ + G+ +GL+G NG GK+T LK+L P ++
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-------------------TSGT 58
Query: 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
A ++ + +R + + + S + D + Y +L+ L + +
Sbjct: 59 AYINGYS----IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEV 114
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLW 358
+L LG T + + ++ SGG + ++SLA AL P++LLLDEPT+ LD R +W
Sbjct: 115 ELLLRVLGLTDKAN-KRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 359 --LEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ E R +++++ +H D +C I + D KL
Sbjct: 174 DLILEV--RKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 60/207 (28%), Positives = 86/207 (41%), Gaps = 39/207 (18%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
L S+ I G+ L+GP+G GK+TLL+L+A + P + +L ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIA--GLERPDSGTILFGGEDATDVPVQERN 75
Query: 241 -AVVSAHEELVK---LREEVA-SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDA 295
V H L + + + VA L+ V + + K+ EL + +Q
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLR----VKPRSERPPEAEIRAKVHELLKLVQ------ 125
Query: 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--- 352
L L R SGG R R++LARAL V+P +LLLDEP LD
Sbjct: 126 --------LDWLA------DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 353 ---LRAVLWLEEYLCRWKKTLVVVSHD 376
LR WL T V V+HD
Sbjct: 172 RKELRR--WLRRLHDELHVTTVFVTHD 196
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 32/215 (14%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ I + GK L+ ++ + G+ ++GP+G GK+TLL L+A ++ +
Sbjct: 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIA--GFVPYQHGSIT 59
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
L + V G A + VV +E L+ R ++
Sbjct: 60 LDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNV-----------------------AFG 94
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
+L + A ++L +G + + R SGG R R+ +ARAL P LLLLD
Sbjct: 95 LQLAGVEKMQRLEIAHQMLKKVGL-EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153
Query: 346 EPTNHLDLRAVLWLEEYLCR-WKKT---LVVVSHD 376
EP LD ++ L + W++T +++++HD
Sbjct: 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
|
Length = 255 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 62/201 (30%), Positives = 87/201 (43%), Gaps = 54/201 (26%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSPTEGEVR------------RS 557
L +D+ + G VAI+GP+G+GK+TLL NLL P G +R
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE---QPEAGTIRVGDITIDTARSLSQ 75
Query: 558 QKLRIGRYSQH--FV-----------DLLTMEETPVSYLLRLHPDQEGLSKQEAV---RA 601
QK I + QH FV L + E PV +G K+EA R
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV--------KGEPKEEATARARE 127
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD-------MQS 654
L K GL P +LSGGQ+ RV +P ++L DEPT+ LD + +
Sbjct: 128 LLAKVGLAGKETSYP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186
Query: 655 IDALADALDEFTGGVVLVSHD 675
I LA + +V+V+H+
Sbjct: 187 IRQLA----QEKRTMVIVTHE 203
|
Length = 250 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
++++ VSFSYPN E+ L +V I+ G VAI+G NG+GKST+ +L G L P GE
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 554 V 554
+
Sbjct: 66 I 66
|
Length = 271 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-10
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 49/156 (31%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVRRSQK------LRIGR 564
L+++ + GT A++G +GAGK+TLL++LAG GE+ + + R
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82
Query: 565 YSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLS 621
Y + LT+ E LR GLS +
Sbjct: 83 YVEQQDVHSPNLTVREA-----LRFSALLRGLSVE------------------------- 112
Query: 622 GGQKARVVFTSISM---SKPHILLLDEPTNHLDMQS 654
Q+ R+ +I + +KP IL LDEPT+ LD Q+
Sbjct: 113 --QRKRL---TIGVELAAKPSILFLDEPTSGLDSQA 143
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 7e-10
Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 30/195 (15%)
Query: 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVE 228
D + G+ L S ++ G+ + GPNG GK+TLL++LA + P VLL
Sbjct: 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILA--GLSPPLAGRVLL-N 60
Query: 229 QEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL 288
+ R +I L+ L G G + E L
Sbjct: 61 GGPLDFQRDSI------ARGLLYL--------------GHAPGIKT------TLSVLENL 94
Query: 289 QILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
+ +D ++ Q + LA +G + RP S G + R++LAR L L +LDEPT
Sbjct: 95 RFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153
Query: 349 NHLDLRAVLWLEEYL 363
LD V E +
Sbjct: 154 TALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP----------- 549
VSF+YP+ + L+D+ I G+ A++G NG+GKST+ L+ G L P
Sbjct: 11 VSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVD 70
Query: 550 -------TEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK 602
T ++R + FV ++ R P E + VR
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPE---MIKIVRDV 127
Query: 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
L G+ + P A LSGGQK RV I +P I++LDE T+ LD
Sbjct: 128 LADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175
|
Length = 282 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 62/213 (29%), Positives = 92/213 (43%), Gaps = 47/213 (22%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L D+ + I+ G A++G NGAGKSTLL LAGDL T G R ++ G + + L
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL--TGGGAPRGARVT-GDVTLNGEPL 73
Query: 573 LTMEETPVSYLLRLHPDQE----GLSKQEAVRAKLGKF------GLPSHNHLTPIA---- 618
++ ++ L + P S +E V LG++ G +H IA
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIV--LLGRYPHARRAGALTH-RDGEIAWQAL 130
Query: 619 --------------KLSGGQKARVVFTSI---------SMSKPHILLLDEPTNHLDM--- 652
LSGG+ ARV F + + P LLLDEPT LD+
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 653 -QSIDALADALDEFTGGVVLVSHDSRLISRVCD 684
+ +D + ++ GV+ + HD L +R D
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHAD 223
|
Length = 272 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 63/239 (26%), Positives = 99/239 (41%), Gaps = 59/239 (24%)
Query: 486 PEPTELTPPLLQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA 544
P +Q+ ++F Y F L ++++ I A +GP+G GKSTLL
Sbjct: 4 MSMVATAPSKIQVRNLNFYY---GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFN 60
Query: 545 G--DLSP---TEGEVRR------SQKLRIGRYSQHFVDLLTMEETP--------VSYLLR 585
+L P EGE+ + K I V ++ + TP +++ +R
Sbjct: 61 RMYELYPEQRAEGEILLDGENILTPKQDIALLRAK-VGMVFQKPTPFPMSIYDNIAFGVR 119
Query: 586 LHPDQEGLSKQE----------------AVRAKLGKFGLPSHNHLTPIAKLSGGQKARVV 629
L E LS+ E V+ KL + G LSGGQ+ R+
Sbjct: 120 LF---EKLSRAEMDERVEWALTKAALWNEVKDKLHQSGY----------SLSGGQQQRLC 166
Query: 630 FTSISMSKPHILLLDEPTNHLDMQS---IDALADAL-DEFTGGVVLVSHDSRLISRVCD 684
+P +LLLDEP + LD S I+ L L ++T VV+V+H+ + +R D
Sbjct: 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYT--VVIVTHNMQQAARCSD 223
|
Length = 260 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-10
Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 28/235 (11%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ I + V+ KE+LK ++ + G+ + ++GPNG GKSTL K +A + +L
Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL 60
Query: 226 LVEQ---EVVGDDRSAIQAVVS--AHEEL--VKLREEVASLQNSTSVDGEEDGDDANDAG 278
Q E+ D+R+ ++ EE+ V E + S N+ G++ D
Sbjct: 61 FKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR---SARGEEPLDLL 117
Query: 279 EKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338
+ L L KL +LG D S + FSGG + R + + ++
Sbjct: 118 DFLKLLKAKLALLGMDEEFLNRSV---------------NEGFSGGEKKRNEILQMALLE 162
Query: 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRWK---KTLVVVSHDRDFLNTVCTEIIHL 390
P L +LDE + LD+ A+ + E + R + ++ ++++H + LN + + +H+
Sbjct: 163 PKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHV 217
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 8e-10
Identities = 67/275 (24%), Positives = 107/275 (38%), Gaps = 68/275 (24%)
Query: 509 EDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGE------------ 553
+ + L ++ I+ G + I+G +GAGKS L+++L G PT G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 554 --------------------------------VRRSQKLRIGRYSQHFVDLLTMEETPVS 581
+RR + RI Q L + +
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 582 YLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH-LTPIAK-LSGGQKARVVFTSISMSKPH 639
L L + G +EAV + + +H +T IA+ LSGG+K RVV +P
Sbjct: 131 VLEALE--EIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF 188
Query: 640 ILLLDEPTNHLDMQSIDALADALDEFTG----GVVLVSHDSRLISRVCDDEERSEIW--- 692
+ L DEPT LD Q+ + +AL+E +VL SH +I + D IW
Sbjct: 189 LFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD----KAIWLEN 244
Query: 693 --VVENGT----VSRFPGTFEEYKEDLQREIKAEV 721
+ E GT V+ F E +++ + E+ +
Sbjct: 245 GEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPI 279
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-10
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE--------VRRSQKLR--IGR 564
V + G ++GPNGAGK+T + +L L PT G VR +++R IG
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
Query: 565 YSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNHLTPIAK 619
Q D LT E L +H G+ E + L GL +
Sbjct: 78 VFQDLSVDDELTGWEN-----LYIHARLYGVPGAERRERIDELLDFVGLLEAAD-RLVKT 131
Query: 620 LSGGQKARVVFTSISMS---KPHILLLDEPTNHLDMQSIDALADAL----DEFTGGVVLV 672
SGG + R+ I+ S +P +L LDEPT LD Q+ + + + +EF ++L
Sbjct: 132 YSGGMRRRL---EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT 188
Query: 673 SHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710
+H ++CD + ++++G + GT EE K
Sbjct: 189 THYMEEAEQLCD-----RVAIIDHGRI-IAEGTPEELK 220
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-10
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 39/196 (19%)
Query: 527 AIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLL-- 584
A+ GP+G+GK++L+N++AG P EG + + ++ + F L E+ + Y+
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIF---LPPEKRRIGYVFQD 84
Query: 585 -RLHPDQEGLSKQEAVRAKLG---KFGLPSH----------NHLT---PIAKLSGGQKAR 627
RL P VR L + + HL P LSGG+K R
Sbjct: 85 ARLFPHY-------TVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-TLSGGEKQR 136
Query: 628 VVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTGGVVLVSHDSRLISRVC 683
V ++ P +LL+DEP LD+ + L DE ++ VSH + R+
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196
Query: 684 DDEERSEIWVVENGTV 699
D + V+ENG V
Sbjct: 197 D-----RVVVLENGKV 207
|
Length = 352 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 41/246 (16%)
Query: 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221
+K+++ F LK S+ + G+ +G++G +G GKSTL++ + + P +
Sbjct: 3 ELKNVS-KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 222 IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA------SLQNSTSVDGEEDGDDAN 275
+ V G D + + +EL K R + +L +S +V N
Sbjct: 62 V-------LVDGTDLTLLSG-----KELRKARRRIGMIFQHFNLLSSRTVFE-------N 102
Query: 276 DAGEKLAELYEKLQILGSDAAE--AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLAR 333
A L L+I G AE + ++L +G + P SGG + R+ +AR
Sbjct: 103 VA---LP-----LEIAGVPKAEIEERVLELLELVGLEDKADAYPA-QLSGGQKQRVGIAR 153
Query: 334 ALFVQPTLLLLDEPTNHLD---LRAVL-WLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIH 389
AL P +LL DE T+ LD +++L L + T+V+++H+ + + +C +
Sbjct: 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAV 213
Query: 390 LHDQKL 395
+ ++
Sbjct: 214 MEKGEV 219
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 43/224 (19%)
Query: 166 ITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
+ N F G +L+ S+ I G+ LVGP+G GKSTL+ L+ P+ D
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI-------PRFYD 53
Query: 224 VLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAE 283
V + G D L LR ++ + + ND
Sbjct: 54 VDSGRILIDGHDVRDY--------TLASLRRQIGLVSQDVFL--------FNDT------ 91
Query: 284 LYEKLQILGSDAAEAQ---ASKILAGLGFTKEM-QGRPTK------SFSGGWRMRISLAR 333
+ E + A + A++ F E+ +G T SGG R RI++AR
Sbjct: 92 VAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIAR 151
Query: 334 ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
AL P +L+LDE T+ LD + ++ L R K T V++H
Sbjct: 152 ALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAH 195
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-09
Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVG-DDR 236
+LK + + G+ LVGP+G GKST+ LL + + P VLL +V D
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL--QNLYQPTGGQVLLDGVPLVQYDHH 551
Query: 237 SAIQAVVSAHEELV----KLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG 292
+ V +E V +RE +A T +I+
Sbjct: 552 YLHRQVALVGQEPVLFSGSVRENIAYGLTDT----------------------PDEEIMA 589
Query: 293 SDAAEAQASKILAGLGFTKEMQGRPTKSF-SGGWRMRISLARALFVQPTLLLLDEPTNHL 351
+ A A A + + + S SGG + RI++ARAL +P +L+LDE T+ L
Sbjct: 590 A-AKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648
Query: 352 DLRAVLWLEEYLCRWKKTLVVVSH 375
D L+E R +T+++++H
Sbjct: 649 DAECEQLLQESRSRASRTVLLIAH 672
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 73/235 (31%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 167 TIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL 226
+ N S G+ LL S+ GK GL+G NG GKSTLLK+L R P P ++LL
Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG-RHQP-PSEGEILL 70
Query: 227 VEQEVVGDDRSAIQAVVS------AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEK 280
Q + A V+ E + +RE VA G A G
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAI--------GRYPWHGA--LGRF 120
Query: 281 LAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
A EK++ EA + L GL K + R S SGG R R +A +
Sbjct: 121 GAADREKVE-------EAIS---LVGL---KPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167
Query: 341 LLLLDEPTNHLDLR---AVLWLEEYLCRWKK-TLVVVSHDRDFLNTVCTEIIHLH 391
LLLDEPT+ LD+ VL L L + + T++ V HD + C ++ L
Sbjct: 168 CLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR 222
|
Length = 265 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 40/207 (19%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV--GDDRSA 238
LK ++ I G+ L+G +G GKSTLL L++ + P + V+L +++ G DR
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLIS--GLAQPTSGGVILEGKQITEPGPDR-- 56
Query: 239 IQAVVSAHEELV---KLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDA 295
VV + L+ +RE +A + D + E+ A + E + ++G
Sbjct: 57 --MVVFQNYSLLPWLTVRENIALAVDRVLPDLSK--------SERRAIVEEHIALVGLTE 106
Query: 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA 355
A A K RP + SGG + R+++ARAL ++P +LLLDEP LD
Sbjct: 107 A---ADK-------------RPGQ-LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149
Query: 356 VLWLEEYLCR-WKK---TLVVVSHDRD 378
L+E L + W++ T+++V+HD D
Sbjct: 150 RGNLQEELMQIWEEHRVTVLMVTHDVD 176
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 36/227 (15%)
Query: 500 EVSFSYPNREDFK---LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR- 555
VS++Y ++ + DV+ + G AIVG G+GKSTL+ + L PT G V
Sbjct: 7 NVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV 66
Query: 556 --------------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA 601
R + RIG Q F + E+T V + P ++ E V+
Sbjct: 67 DDITITHKTKDKYIRPVRKRIGMVFQ-FPESQLFEDT-VEREIIFGPKNFKMNLDE-VKN 123
Query: 602 K----LGKFGLPSH-NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
L G +P ++SGGQ ++ SI P I++LDEPT LD QS
Sbjct: 124 YAHRLLMDLGFSRDVMSQSPF-QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182
Query: 657 ALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ L ++LVSHD ++R D E+ V++ G++
Sbjct: 183 QVMRLLKSLQTDENKTIILVSHDMNEVARYAD-----EVIVMKEGSI 224
|
Length = 286 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 16/142 (11%)
Query: 526 VAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQKLRIGRYSQHFVDLLTMEETPVSYL- 583
+AI+G NG+GKSTL +LAG + PT GE+ L G YS + + + P + L
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101
Query: 584 ------------LRLHPDQEGLSKQEAVRAKLGKFGL-PSHNHLTPIAKLSGGQKARVVF 630
LRL+ D E +++ + L + GL P H P L+ GQK R+
Sbjct: 102 PRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHM-LAPGQKQRLGL 160
Query: 631 TSISMSKPHILLLDEPTNHLDM 652
+ +P +++ DE LDM
Sbjct: 161 ARALILRPKVIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSP---TEGEV 554
++ Y ++ L D+++ I A++GP+G GKSTLL N + DL P EGEV
Sbjct: 13 LNLYYGDKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRM-NDLIPGARVEGEV 69
Query: 555 R------RSQKL-------RIGRYSQHFVDLLTMEETP--------VSYLLRLHPDQEGL 593
K+ R+G Q P V+Y LRLH G+
Sbjct: 70 LLDGKNIYDPKVDVVELRRRVGMVFQK--------PNPFPMSIYDNVAYGLRLH----GI 117
Query: 594 SKQ---EAVRAKLGKFGL---PSHNHLTPIAKLSGGQKARVVFT-SISMSKPHILLLDEP 646
+ E V + L K L LSGGQ+ R+ ++++ KP +LL+DEP
Sbjct: 118 KDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV-KPEVLLMDEP 176
Query: 647 TNHLD---MQSIDALADAL-DEFTGGVVLVSHDSRLISRVCD 684
T+ LD I+ L L ++T +V+V+H+ + +RV D
Sbjct: 177 TSALDPISTLKIEELITELKKKYT--IVIVTHNMQQAARVSD 216
|
Length = 253 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 76/261 (29%), Positives = 113/261 (43%), Gaps = 62/261 (23%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLK-LLAWRKIPVPKN 221
I +D F G +L S++I G+ +VGP+G GKSTLL+ LL + P++
Sbjct: 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PES 507
Query: 222 IDVLLVEQEVVGDDRSAIQ---AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAG 278
V Q++ G D A++ VV LQN + G
Sbjct: 508 GSVFYDGQDLAGLDVQAVRRQLGVV---------------LQNGRLMSGS---------- 542
Query: 279 EKLAELYEKLQILGS-----DAAEAQASKILAGL-GFTKEM-QGRPT------KSFSGGW 325
++E I G D A A +AGL + M G T + SGG
Sbjct: 543 -----IFE--NIAGGAPLTLDEAWEAAR--MAGLAEDIRAMPMGMHTVISEGGGTLSGGQ 593
Query: 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTV-- 383
R R+ +ARAL +P +LL DE T+ LD R + E L R K T +V++H R L+T+
Sbjct: 594 RQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH-R--LSTIRN 650
Query: 384 CTEIIHLHDQKLHFYRGNFDD 404
I L ++ +G +D+
Sbjct: 651 ADRIYVLDAGRV-VQQGTYDE 670
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 26/150 (17%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPT---------EGEVRRSQKLRIGRYSQHFVDL- 572
G +A++GP+G+GKSTLLN LAG + + + R G +Q D+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD--DIL 151
Query: 573 ---LTMEETPV-SYLLRLHPDQEGLSKQEAVRAK---LGKFGLPSHNHL----TPIAKLS 621
LT+ ET V LLRL + L+KQE + + + GL + + I +S
Sbjct: 152 YPHLTVRETLVFCSLLRL---PKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGIS 208
Query: 622 GGQKARVVFTSISMSKPHILLLDEPTNHLD 651
GG++ RV + P +L+LDEPT+ LD
Sbjct: 209 GGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 22/191 (11%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-------------RRSQK 559
++DV + ++ G V ++GPNGAGK+T ++ G + P G++ +R++
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR- 78
Query: 560 LRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP 616
L IG Q F LT+E+ ++ L D + ++E + A L +F + +H +
Sbjct: 79 LGIGYLPQEASIFRK-LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-THLRDSK 136
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALADALDEFTGGVVLVS 673
LSGG++ RV + P +LLDEP +D + I + L + GV++
Sbjct: 137 AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITD 196
Query: 674 HDSRLISRVCD 684
H+ R +CD
Sbjct: 197 HNVRETLDICD 207
|
Length = 243 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 28/186 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG---------------EVRRS 557
++D D+ I G I+G +G+GKST + +L + PT G E+R
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 558 QKLRIGRYSQHFVDL--LTMEETPVSYLLRLH--PDQEGLSKQEAVRAKLGKFGLPSHNH 613
++ +IG Q F +T+ + S L P+QE ++E L GL + H
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQN-TSLGPELLGWPEQE---RKEKALELLKLVGLEEYEH 124
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTGGV 669
P +LSGG + RV ++P ILL+DE + LD D++ D L +
Sbjct: 125 RYP-DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183
Query: 670 VLVSHD 675
V ++HD
Sbjct: 184 VFITHD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 22/188 (11%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV------------RRSQKL 560
L V + G + G +GAGKSTLL L+ G P+ G++ R L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 561 R--IGRYSQ--HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP 616
R IG Q H + T+ + L+ + + ++ V A L K GL P
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR--VSAALDKVGLLDKAKNFP 135
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG---GVVLVS 673
I +LSGG++ RV ++KP +LL DEPT +LD + + +EF V++ +
Sbjct: 136 I-QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMAT 194
Query: 674 HDSRLISR 681
HD LISR
Sbjct: 195 HDIGLISR 202
|
Length = 222 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-09
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 57/231 (24%)
Query: 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244
S + G+ +GL+GPNG GK+TL L++ + P + VL +++ G +
Sbjct: 20 SFSVRPGEIHGLIGPNGAGKTTLFNLIS-GFLR-PTSGSVLFDGEDITG---------LP 68
Query: 245 AHEELVKL-----------------REEV---ASLQNSTSVDGEEDGDDANDAGEKLAEL 284
H E+ +L E V A + + + + +A E+ EL
Sbjct: 69 PH-EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEEL 127
Query: 285 YEKLQILG-SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
L+ +G +D A+ A S G + R+ +ARAL P LLL
Sbjct: 128 ---LERVGLADLADRPAG------------------ELSYGQQRRLEIARALATDPKLLL 166
Query: 344 LDEPT---NHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLH 391
LDEP N + + L L T+++V HD D + ++ + L
Sbjct: 167 LDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLD 217
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 42/233 (18%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL-----------AWRKIPVPKNIDVLL 226
+ +L + S+ + G+ L+G +G GKSTL +LL +WR P+ K
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK------ 78
Query: 227 VEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE 286
+ + R IQ V V R+ V E + E
Sbjct: 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTV---------------------REIIREPLR 117
Query: 287 KLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDE 346
L L A+AS++L + + + SGG R+ LARAL V+P LL+LDE
Sbjct: 118 HLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE 177
Query: 347 PTNHLDL----RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
++LDL + L++ ++ + ++HD + C ++ + + ++
Sbjct: 178 AVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 31/217 (14%)
Query: 165 DITID--NFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
++ ID S + K ++ S I+ G+ +GL+GPNG GKST+ ++L P I
Sbjct: 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA 282
VL + V R A + + + L E +N V G G + +
Sbjct: 62 TVL--GEPVPSRARLA-RVAIGVVPQFDNLDPEFTVRENLL-VFGRYFGMSTREIEAVIP 117
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
L E ++ E++A +A L SGG + R++LARAL P LL
Sbjct: 118 SLLEFARL------ESKADVRVALL--------------SGGMKRRLTLARALINDPQLL 157
Query: 343 LLDEPTNHLD--LRAVLW--LEEYLCRWKKTLVVVSH 375
+LDEPT LD R ++W L L R KT+++ +H
Sbjct: 158 ILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 66/234 (28%), Positives = 96/234 (41%), Gaps = 51/234 (21%)
Query: 492 TPPLLQLIEVSFSYP-NREDFK-------LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL 543
PLLQ I++ YP R FK L V ++ G +A+VG +G GKSTL LL
Sbjct: 2 QQPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLL 61
Query: 544 AGDLSPTEGEV-----------RRSQKLRIGRYSQHFV---------------DLLTMEE 577
+PT GE+ +QKL R V +L E
Sbjct: 62 TMIETPTGGELYYQGQDLLKADPEAQKLL--RQKIQIVFQNPYGSLNPRKKVGQIL---E 116
Query: 578 TPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-PSHNHLTPIAKLSGGQKARVVFTSISMS 636
P L ++ ++E A + K GL P H P SGGQ+ R+ M
Sbjct: 117 EP----LLINTSLSAAERREKALAMMAKVGLRPEHYDRYP-HMFSGGQRQRIAIARALML 171
Query: 637 KPHILLLDEPTNHLDMQSIDA-----LADALDEFTGGVVLVSHDSRLISRVCDD 685
P +++ DEP + LD+ S+ A + D E V +SHD ++ + D+
Sbjct: 172 DPDVVVADEPVSALDV-SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADE 224
|
Length = 327 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 60/237 (25%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTL-LKLLAWRKIPVPKNIDVLLVEQEVVGDD- 235
++K+ S + G+ GLVG +G GKST L LL R I + E+ D
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL--RLINS---------QGEIWFDGQ 347
Query: 236 -------------RSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA 282
R IQ V ++ +SL +V L
Sbjct: 348 PLHNLNRRQLLPVRHRIQVV---------FQDPNSSLNPRLNV---------------LQ 383
Query: 283 ELYEKLQI----LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338
+ E L++ L + E Q ++ +G E + R FSGG R RI++ARAL ++
Sbjct: 384 IIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILK 443
Query: 339 PTLLLLDEPTNHLDLRAV----LWLEEYL-CRWKKTLVVVSHDRDFLNTVCTEIIHL 390
P+L++LDEPT+ LD + V L L + L + + + +SHD + +C ++I L
Sbjct: 444 PSLIILDEPTSSLD-KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL 499
|
Length = 529 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 491 LTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLS 548
+T P+LQ+ ++S Y ++ L+ V + A++GP+G+GKSTLL + DL+
Sbjct: 1 MTEPILQVSDLSVYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN 58
Query: 549 P---TEGEVRRSQK-----------LR--IGRYSQHFVDL-LTMEETPVSYLLRLHPDQE 591
P G + + LR IG Q +++ E V Y LRL ++
Sbjct: 59 PEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYEN-VVYGLRLKGIKD 117
Query: 592 GLSKQEAVRAKLGKFGL----PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647
EAV L + H + + LSGGQ+ RV + + P I+LLDEPT
Sbjct: 118 KQVLDEAVEKSLKGASIWDEVKDRLHDSALG-LSGGQQQRVCIARVLATSPKIILLDEPT 176
Query: 648 NHLDMQSIDALADAL----DEFTGGVVLVSHDSRLISRVCD 684
+ LD S + + L D++T ++LV+ + SR+ D
Sbjct: 177 SALDPISAGKIEETLLGLKDDYT--MLLVTRSMQQASRISD 215
|
Length = 252 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-09
Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 38/157 (24%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSY 582
G + IVGP G+GK+TL LA +L P G V + E+
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVI----------------YIDGEDILEEV 45
Query: 583 LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642
L +L G K A SG + R+ KP +L+
Sbjct: 46 LDQLLLIIVGGKK----------------------ASGSGELRLRLALALARKLKPDVLI 83
Query: 643 LDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI 679
LDE T+ LD + L + ++ + +I
Sbjct: 84 LDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 30/198 (15%)
Query: 501 VSFSY-PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQ 558
++F Y ++E + L+DV + G ++I+G NG+GKST + L+ G L G++
Sbjct: 10 LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69
Query: 559 KL----------RIGRYSQH----FVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRA 601
L +IG Q+ FV T+E+ V++ L + +G+ +E V
Sbjct: 70 LLTEENVWDIRHKIGMVFQNPDNQFVGA-TVEDD-VAFGL----ENKGIPHEEMKERVNE 123
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDA 657
L G+ P A+LSGGQK RV +P I++LDE T+ LD ++ I
Sbjct: 124 ALELVGMQDFKEREP-ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182
Query: 658 LADALDEFTGGVVLVSHD 675
+ D++ V+ ++HD
Sbjct: 183 IKGIRDDYQMTVISITHD 200
|
Length = 279 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 30/248 (12%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
LK S+ I +GP+G GKST L+L +P R +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP--------------ATRLEGE 64
Query: 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
+ K +V L+ + + + E +A + + +
Sbjct: 65 IRIDGRNIYDK-GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRV 123
Query: 301 SKILAGLGFTKEMQGRPTKS---FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL 357
+ L G E++ + +S SGG + R+ +ARA+ V P++LL+DEP + LD +
Sbjct: 124 EETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTA 183
Query: 358 WLEEYLCRWKK--TLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN---FDDFESGYEQR 412
+EE + KK T+V+V+H+ + + D+ FY G +DD + +
Sbjct: 184 KVEELIHELKKDYTIVIVTHNMQ-------QAARVSDKTAFFYMGEMVEYDDTKKIFTNP 236
Query: 413 RKEMNKKF 420
KE + +
Sbjct: 237 EKEATQNY 244
|
Length = 250 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 3e-09
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 167 TIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
++N SV G+ +L S+ I G+ G++GPNG GKSTLLK LA
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA 46
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 41/235 (17%)
Query: 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLV 227
+ N S K +L ++ I GK Y ++G +G GKSTLL ++ + + V L
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG--LLEKFDSGQVYLN 58
Query: 228 EQEVVGDDRSAIQAVVSAHEELVKLREEVASL-QNSTSVDGE---EDGDDA-----NDAG 278
QE + S + RE++ L QN ++ E E+ D
Sbjct: 59 GQE--------TPPLNSK-KASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKK 109
Query: 279 EKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338
EK + E L+ +G + Q SGG + R++LARA+
Sbjct: 110 EKREKKKEALEKVGLNLKLKQ-----------------KIYELSGGEQQRVALARAILKP 152
Query: 339 PTLLLLDEPTNHLDLR---AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390
P L+L DEPT LD + VL L L KT+++V+HD + +I L
Sbjct: 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD-PEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 51/191 (26%), Positives = 71/191 (37%), Gaps = 45/191 (23%)
Query: 174 AARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 232
RG + L S ++ G+ L GPNG GK+TLL+L+A P I ++ +
Sbjct: 10 CVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI---KLDGGDI 66
Query: 233 GDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQ--- 289
D A H +K + +V E L+
Sbjct: 67 DDPDVAEACHYLGHRNAMK---------PALTVA-------------------ENLEFWA 98
Query: 290 -ILG---SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
LG D A A + LA L P S G + R++LAR L + +LD
Sbjct: 99 AFLGGEELDIAAALEAVGLAPLA------HLPFGYLSAGQKRRVALARLLVSNRPIWILD 152
Query: 346 EPTNHLDLRAV 356
EPT LD AV
Sbjct: 153 EPTAALDAAAV 163
|
Length = 207 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 31/209 (14%)
Query: 196 LVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREE 255
L+GP+G GKS+LL++L + +P++ + + D S + + + LR
Sbjct: 33 LLGPSGAGKSSLLRVL--NLLEMPRSGTLNIAGNHF---DFSK----TPSDKAIRDLRRN 83
Query: 256 VA------SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGF 309
V +L +V E L E ++ L D A A+A K+L L
Sbjct: 84 VGMVFQQYNLWPHLTVQ------------ENLIEAPCRVLGLSKDQALARAEKLLKRLRL 131
Query: 310 TKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD---LRAVLWLEEYLCRW 366
P SGG + R+++ARAL ++P +LL DEPT LD ++ + + L
Sbjct: 132 KPYADRYPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET 190
Query: 367 KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
T V+V+H+ + + ++++ + +
Sbjct: 191 GITQVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 3e-09
Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-----------RRSQKLRIG 563
++ V I G AI+GPNG GKSTLL L+ ++P G V + RIG
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84
Query: 564 RYSQHFVDLLTMEETPVSYLLR--LHPDQEGLSK-----QEAVRAKLGKFGLPSHNHLTP 616
+Q + T + V L+ +P Q ++ +EAV + G+ +H
Sbjct: 85 LLAQ---NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI-THLADQS 140
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM-QSIDAL 658
+ LSGGQ+ R + + I+LLDEPT LD+ ID L
Sbjct: 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL 183
|
Length = 265 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 36/227 (15%)
Query: 171 FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230
F + + L + S+ + G+ YG++G +G GKSTL++ + + P
Sbjct: 11 FHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---------SGS 61
Query: 231 VVGDDRSAIQAVVSAHEELVKLREEVA------SLQNSTSVDGEEDGDDANDAGEKLAEL 284
V+ D + ++ EL K R ++ +L +S +V G L
Sbjct: 62 VIVDGQDLTTL---SNSELTKARRQIGMIFQHFNLLSSRTVFGN-------------VAL 105
Query: 285 YEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344
+L D + + +++LA +G + P+ + SGG + R+++ARAL P +LL
Sbjct: 106 PLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLC 164
Query: 345 DEPTNHLD---LRAVL-WLEEYLCRWKKTLVVVSHDRDFLNTVCTEI 387
DE T+ LD +++L L+E R T+++++H+ D + +C +
Sbjct: 165 DEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-09
Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 32/193 (16%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ N + + + L + S ++ G+ + GPNG+GK+TLL++LA P
Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD------- 53
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
EV + + + H ++ L + L+ S
Sbjct: 54 --SGEVRWNGTALAEQRDEPHRNILYL-GHLPGLKPELSA-------------------L 91
Query: 286 EKLQILGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
E L + AQ LA +G T + P S G + R++LAR + L +
Sbjct: 92 ENLHFWAAIHGGAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWI 150
Query: 344 LDEPTNHLDLRAV 356
LDEPT LD V
Sbjct: 151 LDEPTTALDKAGV 163
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 45/202 (22%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS--PTEGEVR-RSQKL--------- 560
L V++ + G AI+GPNG+GKSTL +AG S T G + + Q L
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75
Query: 561 RIGRYSQHFVDLLTMEETP-VSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTP 616
R G F+ EE P VS L L S A R+ G+ L L
Sbjct: 76 RAGL----FLAFQYPEEIPGVSNLEFLR------SALNARRSARGEEPLDLLDFLKLLKA 125
Query: 617 IAKL----------------SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD 660
L SGG+K R +++ +P + +LDE + LD+ ++ +A+
Sbjct: 126 KLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 661 ALDEF---TGGVVLVSHDSRLI 679
++ ++++H RL+
Sbjct: 186 GINRLREPDRSFLIITHYQRLL 207
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 5e-09
Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 54/236 (22%)
Query: 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS----- 237
+ S+ + G+ +G+VG +G GK+TL K++A P ++V + ++ V
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 238 -AIQAVVSAHEE--LVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSD 294
A + + H+E L R + +L + ++ L +
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE------------------------LPDE 397
Query: 295 AAEAQASKILAGLGFT----KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNH 350
A +A L +GF +E+ + S G R R++LA+ L +P +++LDEPT
Sbjct: 398 LARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457
Query: 351 LD-----------LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+D L+A +E+ T ++VSHD DF+ VC + D K+
Sbjct: 458 MDPITKVDVTHSILKAREEMEQ-------TFIIVSHDMDFVLDVCDRAALMRDGKI 506
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 5e-09
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 29/210 (13%)
Query: 500 EVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSPT---EGE 553
+V+F Y DF L + + I+ + VA +GP+G GKST L L DL P EGE
Sbjct: 8 DVNFWY---GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGE 64
Query: 554 VR------RSQKLRIGRYSQHFVDLLTMEETP--------VSYLLRLHPDQEGLSKQEAV 599
+R + +++ ++ V ++ P V+Y LR++ ++ ++ V
Sbjct: 65 IRIDGRNIYDKGVQVDELRKN-VGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRV 123
Query: 600 RAKLGKFGL--PSHNHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
L L + L A LSGGQ+ R+ P +LL+DEP + LD S
Sbjct: 124 EETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTA 183
Query: 657 ALADALDEFTGG--VVLVSHDSRLISRVCD 684
+ + + E +V+V+H+ + +RV D
Sbjct: 184 KVEELIHELKKDYTIVIVTHNMQQAARVSD 213
|
Length = 250 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-09
Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 30/223 (13%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKST----LLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
+ S+ + G+ GLVG +G GKST LL+L+ P ++ Q++ G R
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-------PSQGEIRFDGQDIDGLSR 355
Query: 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAA 296
++ + V ++ SL +V G+ + E + S A
Sbjct: 356 KEMRPL--RRRMQVVFQDPYGSLSPRMTV------------GQIIEEGLRVHEPKLSAAE 401
Query: 297 -EAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA 355
+ + + L +G + R FSGG R RI++ARAL ++P L+LLDEPT+ LD
Sbjct: 402 RDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461
Query: 356 VLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTEIIHLHDQK 394
+ + L ++ + + +SHD + +C +I + D K
Sbjct: 462 QAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
|
Length = 534 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
A +A ++L +G E+ RP + S G + R+ +ARAL QP LLLLDEP L+
Sbjct: 124 REARERARELLEFVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182
Query: 354 RAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTEIIHLH 391
L E + + T++++ HD + + I+ L+
Sbjct: 183 EETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN 224
|
Length = 250 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 7e-09
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 37/219 (16%)
Query: 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244
+ + G+ +VGP+G GKSTLL L+A P++ VL+ +V +
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIA--GFETPQSGRVLINGVDVTAAPPA------- 68
Query: 245 AHEELVKLREEVASLQNSTSV----DGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
V+ L ++ E++ G KL +
Sbjct: 69 --------DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ-----------AI 109
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRA-VL 357
LA +G + P SGG R R++LAR L +LLLDEP LD LRA +L
Sbjct: 110 EVALARVGLAGLEKRLP-GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
Query: 358 WLEEYLCRWKK-TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
L L K T+++V+H + + ++ L + ++
Sbjct: 169 DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-09
Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-------------RRSQK 559
L ++ ++ G+ VA+VG G+GKSTL+ L P+ G + + +K
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 560 LR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK---LGKFGLPSHNHL 614
LR + Q F + E T V + P G S+ EA L K GL
Sbjct: 83 LRKKVSLVFQ-FPEAQLFENT-VLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS 140
Query: 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVL 671
+LSGGQ RV + +P IL LDEP LD + + ++ V+L
Sbjct: 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200
Query: 672 VSHDSRLISRVCDD 685
V+H+ ++ DD
Sbjct: 201 VTHNMDDVAEYADD 214
|
Length = 287 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 51/231 (22%), Positives = 102/231 (44%), Gaps = 27/231 (11%)
Query: 168 IDNFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL 226
I + V GK E+LK ++ + G+ + ++GPNG GKSTL + ++L
Sbjct: 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65
Query: 227 VEQEVVG---DDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAE 283
++++ D+R+ ++ + E+ + NS + + A L E
Sbjct: 66 DGEDILELSPDERARAGIFLAFQYPV-----EIPGVTNSDFLRAA--MNARRGARGILPE 118
Query: 284 LYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP-TKSFSGGWRMRISLARALFVQPTLL 342
++L+ + LG +E R + FSGG + R + + L ++P L
Sbjct: 119 FIKELK------------EKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLA 166
Query: 343 LLDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390
+LDEP + LD L+ V L + +++++H + L+ + + +H+
Sbjct: 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217
|
Length = 251 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 8e-09
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV- 554
++ ++F + N + DV G VAIVGP GAGK+TL+NLL PT G++
Sbjct: 335 VEFRHITFEFANSSQ-GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393
Query: 555 ----------RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR---- 600
R S + I F D + + +RL +EG + +E
Sbjct: 394 IDGIDINTVTRESLRKSIATV---FQDAGLFNRS-IRENIRL--GREGATDEEVYEAAKA 447
Query: 601 AKLGKFGLP-SHNHLTPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
A F L S+ + T + +LSGG++ R+ + IL+LDE T+ LD+++
Sbjct: 448 AAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507
Query: 656 DALADALD 663
+ +A+D
Sbjct: 508 ARVKNAID 515
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 9e-09
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 30/219 (13%)
Query: 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSP 549
LL +V+ Y +++ K +V++ + GT A++GP+G GK+T L + DL+P
Sbjct: 1 MTLLLSAQDVNIYYGDKQAVK--NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTP 58
Query: 550 TEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP 609
V L VD + M + +P +S + V A L G+
Sbjct: 59 G-ARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPT-MSVFDNVVAGLKLAGIR 116
Query: 610 SHNHL----------------------TPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647
+HL TP LSGGQ+ R+ +P ILL+DEPT
Sbjct: 117 DRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176
Query: 648 NHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCD 684
+ LD S + D + + +++V+H+ +RV D
Sbjct: 177 SALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSD 215
|
Length = 252 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD- 352
D + +K+L G + +P SGG R R++LARAL +P + LLDEP ++LD
Sbjct: 111 DKRVKEVAKLL---GLEHLLNRKP-LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 353 -LRAVLWLEEYLCRWKK----TLVVVSHD 376
LR + + + + + T + V+HD
Sbjct: 167 KLRVL--MRSEIKKLHERLGTTTIYVTHD 193
|
Length = 338 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 58/233 (24%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL 560
V F Y L ++ + I G V IVG +G+GKSTL L+ P G V
Sbjct: 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV------ 59
Query: 561 RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV--------RAKLGKFGLP--- 609
VD + ++L R Q G+ QE V L G+
Sbjct: 60 --------LVDGHDLALADPAWLRR----QVGVVLQENVLFNRSIRDNIALADPGMSMER 107
Query: 610 ---------SHNHLTPI------------AKLSGGQKARVVFTSISMSKPHILLLDEPTN 648
+H+ ++ + A LSGGQ+ R+ + P IL+ DE T+
Sbjct: 108 VIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATS 167
Query: 649 HLDMQSIDALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
LD +S A+ + + G V++++H RL + D I V+E G +
Sbjct: 168 ALDYESEHAIMRNMHDICAGRTVIIIAH--RLSTVKNAD----RIIVMEKGRI 214
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 58/238 (24%)
Query: 490 ELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVA----IVGPNGAGKSTLLNLLAG 545
E+ P++++ VS Y + + + VD + + + IVG +GAGK+TL ++AG
Sbjct: 274 EVGEPIIKVRNVSKRYISVDRGVVKAVD-NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG 332
Query: 546 DLSPTEGEV------------RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLH------ 587
L PT GEV + R GR + ++ +L E Y L H
Sbjct: 333 VLEPTSGEVNVRVGDEWVDMTKPGPDGR-GRAKR-YIGILHQE-----YDLYPHRTVLDN 385
Query: 588 ---------PDQEGLSKQEAVRA--------KLGKFGLPSHNHLTPIAKLSGGQKARVVF 630
PD+ L++ +AV + + L + +LS G++ RV
Sbjct: 386 LTEAIGLELPDE--LARMKAVITLKMVGFDEEKAEEILDKYPD-----ELSEGERHRVAL 438
Query: 631 TSISMSKPHILLLDEPTNHLD----MQSIDALADALDEFTGGVVLVSHDSRLISRVCD 684
+ + +P I++LDEPT +D + ++ A +E ++VSHD + VCD
Sbjct: 439 AQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 45/236 (19%)
Query: 486 PEP-TELTPPLLQLIEVSFSYPNR---------EDFKLSDVDVGIDMGTRVAIVGPNGAG 535
P P E PLL + ++ ++P R + + ++ + G + +VG +G+G
Sbjct: 265 PVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSG 324
Query: 536 KST----LLNLLAGDLSPTEGEV----------RRSQKLRIGRYSQ-HFVD-------LL 573
KST LL L+ ++GE+ R Q L + Q F D L
Sbjct: 325 KSTTGLALLRLIN-----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL 379
Query: 574 TMEETPVSYLLRLH-PDQEGLSKQEAVRAKLGKFGL-PSHNHLTPIAKLSGGQKARVVFT 631
+ + + LR+H P +++ V A + + GL P H P A+ SGGQ+ R+
Sbjct: 380 NVLQI-IEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP-AEFSGGQRQRIAIA 437
Query: 632 SISMSKPHILLLDEPTNHLD---MQSIDALADALDEFTG-GVVLVSHDSRLISRVC 683
+ KP +++LDEPT+ LD I AL +L + + +SHD ++ +C
Sbjct: 438 RALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALC 493
|
Length = 529 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 37/199 (18%)
Query: 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ--AV 242
S + G+ +GL+GPNG GK+T L++L + P + L + V R A Q V
Sbjct: 27 SFHVQRGECFGLLGPNGAGKTTTLRMLL--GLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE--KLQILGSDAAEAQA 300
V + L + +++ + V G G A A + L E KL+ + A+A+
Sbjct: 85 VPQFDNL----DPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE----NKADAKV 136
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLW 358
++ SGG + R++LARAL P +L+LDEPT LD R ++W
Sbjct: 137 GEL------------------SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMW 178
Query: 359 --LEEYLCRWKKTLVVVSH 375
L L R KT+++ +H
Sbjct: 179 ERLRSLLAR-GKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 23/198 (11%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----------RSQKLRIGR 564
+ + G ++GPNGAGK+T L +L G P G + R + R+G
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR--AKLGKFGLPSHNHLTPIAKLSG 622
Q D L + T V L + GLS A L +F + + +LSG
Sbjct: 85 VPQ--FDNLDPDFT-VRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSG 141
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSHDSRLI 679
G K R+ ++ P +L+LDEPT LD Q+ + + L ++L +H
Sbjct: 142 GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEA 201
Query: 680 SRVCDDEERSEIWVVENG 697
R+CD + V+E G
Sbjct: 202 ERLCD-----RLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 32/191 (16%)
Query: 464 DEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMG 523
+ P P+A W+ L+L V+F+Y + F + +++ I G
Sbjct: 308 KAEFPRPQAFPDWQT-----------------LELRNVTFAYQD-NGFSVGPINLTIKRG 349
Query: 524 TRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL----RIGRYSQHFVDLLTMEETP 579
+ ++G NG+GKSTL LL G P GE+ K + Y + F + T
Sbjct: 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVF----TD 405
Query: 580 VSYLLRLHPDQEGLSKQEAVRAKLGKFGLP-----SHNHLTPIAKLSGGQKARVVFTSIS 634
+L + + V L + + ++ + KLS GQK R+
Sbjct: 406 FHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNL-KLSKGQKKRLALLLAL 464
Query: 635 MSKPHILLLDE 645
+ ILLLDE
Sbjct: 465 AEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 14/201 (6%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
E LK + + + L+GP+G GKST L+ L ++ L+ + G+
Sbjct: 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTL--------NRMNDLIPGVTITGNVSL 69
Query: 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAE 297
Q + + +E++V+LR++V + + ++ G +LA + +K +L D A
Sbjct: 70 RGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVI-YGLRLAGVKDK-AVL--DEAV 125
Query: 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL 357
+ K A K+ S SGG + R+ +AR L V+P ++LLDEPT+ LD +
Sbjct: 126 ETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISST 185
Query: 358 WLEEYL--CRWKKTLVVVSHD 376
+E L R + T+++V+H
Sbjct: 186 QIENMLLELRDQYTIILVTHS 206
|
Length = 252 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 23/181 (12%)
Query: 527 AIVGPNGAGKSTLLNLL--AGDLSP---TEGEVRRSQKLRIGRYSQHF-----VDLLTME 576
AI+GP+G GKST L + DL P T G + + G+++ + ++ +
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 577 ETP--------VSYLLRLHPDQEGLSKQEAVRAKLGKFGL--PSHNHLTPIA-KLSGGQK 625
P ++Y RLH + +E V L K L + L A LSGGQ+
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188
Query: 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSHDSRLISRVC 683
R+ +P ILLLDEPT+ LD ++ + D + E G +++V+H+ + SRV
Sbjct: 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVS 248
Query: 684 D 684
D
Sbjct: 249 D 249
|
Length = 286 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 44/196 (22%)
Query: 510 DFKLSDVDVG-IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQH 568
+F L V+ G I + I+GPNG GK+T + +LAG L P EG++
Sbjct: 12 EFTLE-VEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE------------- 57
Query: 569 FVDLLTMEETPVSYLLR-LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAK-------- 619
++L T VSY + + D EG + ++ + + F + T IAK
Sbjct: 58 -IELDT-----VSYKPQYIKADYEG-TVRDLLSSITKDFYTHPY-FKTEIAKPLQIEQIL 109
Query: 620 ------LSGGQKARVVFTSISMSKP-HILLLDEPTNHLDMQSIDALADALDEFT----GG 668
LSGG+ RV +SK I LLDEP+ +LD++ + + F
Sbjct: 110 DREVPELSGGELQRVAIA-ACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKT 168
Query: 669 VVLVSHDSRLISRVCD 684
+V HD +I + D
Sbjct: 169 AFVVEHDIIMIDYLAD 184
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 27/225 (12%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
LK+ ++ I + ++GP+G GKST +K L VP + + E+ + + ++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPN----VKLTGEMNYNGSNILK 83
Query: 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
V +LV+LR+ + + + + D+ G ++ K ++
Sbjct: 84 GKV----DLVELRKNIGMVFQKGNPFPQSIFDNVA-YGPRIHGTKNKKKLQ------EIV 132
Query: 301 SKILAGLGFTKEMQGR---PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL 357
K L + E++ R S SGG + R+ +ARAL P +LL+DEPT+ LD +
Sbjct: 133 EKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTR 192
Query: 358 WLEEYLCRWKK--TLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400
+EE + + K+ T+V+V+H+ + + DQ FY G
Sbjct: 193 KIEELILKLKEKYTIVIVTHNMQ-------QAARVSDQTAFFYMG 230
|
Length = 259 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 36/213 (16%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK--IPVPKNIDVLLVEQEVVGD 234
+ L S+ + L+GP+G GKST L+ L IP + VE E++ D
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR------VEGEILLD 71
Query: 235 DRSAIQAVVSAHEELVKLREEVASL-QNS-----TSVDGEEDGDDANDAGEKLAELYEKL 288
+ + H ++V+LR V + Q + + G N +K A L E++
Sbjct: 72 GEN----IYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDK-AYLAERV 126
Query: 289 QILGSDAAEAQASKILAGLGFTKEMQGRPTKS---FSGGWRMRISLARALFVQPTLLLLD 345
+ + L E++ R +S SGG + R+ +ARAL V+P +LL+D
Sbjct: 127 E------------RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174
Query: 346 EPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
EP + LD A +EE + K T+++V+H+
Sbjct: 175 EPASALDPIATQKIEELIHELKARYTIIIVTHN 207
|
Length = 253 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 57/254 (22%)
Query: 166 ITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL--AWRKIPVPKN 221
++++N ++ G K L+ S + G+ ++GP+G GKSTL +L+ W P +
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW--PPTSGS 374
Query: 222 I-----DVLLVEQEVVGDDRSAI-QAVVSAHEELVK--LREEVASLQNSTSVDGEEDGDD 273
+ D+ ++E G + Q V EL + E +A G++
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYLPQDV-----ELFPGTVAENIARF-----------GEN 418
Query: 274 AND----AGEKLAELYEKLQIL--GSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRM 327
A+ KLA ++E + L G D L+G G R
Sbjct: 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG-----------------GQRQ 461
Query: 328 RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDRDFLNTVC 384
RI+LARAL+ P L++LDEP ++LD L + K T+VV++H L V
Sbjct: 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV- 520
Query: 385 TEIIHLHDQKLHFY 398
+I+ L D ++ +
Sbjct: 521 DKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK----TLV 371
R ++ SGG + R+++ARAL V P +LLLDEP + LD+R L E L + +K T++
Sbjct: 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184
Query: 372 VVSHD 376
V+HD
Sbjct: 185 HVTHD 189
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 61/202 (30%), Positives = 88/202 (43%), Gaps = 35/202 (17%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSP---TEGEVR----------- 555
+ VD+ I A++GP+G GKSTLL N L +L+ EGEVR
Sbjct: 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL-ELNEEARVEGEVRLFGRNIYSPDV 78
Query: 556 -----RSQKLRIGRYSQHFVDLLTMEETPVSYLL-RLHPDQEGLSKQEAVRAKLGKFGL- 608
R + + +Y F L + + L L ++ L E V L K L
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELD--ERVEWALKKAALW 136
Query: 609 -PSHNHLTPI-AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL---- 662
+ L + LSGGQ+ R+V KP ILL+DEPT ++D + + L
Sbjct: 137 DEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK 196
Query: 663 DEFTGGVVLVSHDSRLISRVCD 684
E+T +VLV+H +RV D
Sbjct: 197 KEYT--IVLVTHSPAQAARVSD 216
|
Length = 253 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 14/201 (6%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
K+ L ++ I K L+GP+G GKST L+ L + I + +E EV+ D ++
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLN----RMNDLISNVKIEGEVLLDGKN 72
Query: 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAE 297
V ++V+LR+ V + + D+ G ++ + +K ++ D
Sbjct: 73 IYDKDV----DVVELRKRVGMVFQKPNPFPMSIYDNVA-YGPRIHGIKDKKEL---DKIV 124
Query: 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL 357
A K A K+ + SGG + R+ +AR + V+P ++L+DEPT+ LD + L
Sbjct: 125 EWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTL 184
Query: 358 WLEEYLCRWKK--TLVVVSHD 376
+E+ + KK T+V+V+H+
Sbjct: 185 KIEDLMVELKKEYTIVIVTHN 205
|
Length = 251 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 52/230 (22%)
Query: 165 DITIDNFSVAARGKEL--LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
DI N + GKE+ L++ + +I GK LVG +G GKST+ LL +
Sbjct: 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT-------RFY 393
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA------SLQNSTSVDGEEDGDDAND 276
D+ E + G D ++ L LR +VA L N T AN+
Sbjct: 394 DIDEGEILLDGHD---LRDY-----TLASLRNQVALVSQNVHLFNDTI---------ANN 436
Query: 277 AGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM-QGRPT------KSFSGGWRMRI 329
E Y + QI +A+++ + F +M G T SGG R RI
Sbjct: 437 IAYARTEQYSREQI-------EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489
Query: 330 SLARALFVQPTLLLLDEPTNHLDL---RAV-LWLEEYLCRWKKTLVVVSH 375
++ARAL +L+LDE T+ LD RA+ L+E + +T +V++H
Sbjct: 490 AIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIAH 537
|
Length = 582 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L ++++ I+ G +AI G G+GK++LL L+ G+L P+EG+++ S ++ G
Sbjct: 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPG 112
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
++ + ++ +E +++ +E ++K E LG+ G+ LSG
Sbjct: 113 TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI----------TLSG 162
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDM 652
GQ+AR+ + LLD P +LD+
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDV 192
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---------------RRSQK 559
DV + + G I+G +G+GKSTLL + + PT G+V R ++
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 560 LRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQE----AVRAKLGKFGLPSHNH 613
+I Q F L T+ E V++ L + +G+ + E A A L GL H
Sbjct: 102 KKISMVFQSFALLPHRTVLEN-VAFGLEV----QGVPRAEREERAAEA-LELVGLEGWEH 155
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD------MQSIDALADALDEFTG 667
P +LSGG + RV P ILL+DE + LD MQ D L E
Sbjct: 156 KYP-DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQ--DELLRLQAELQK 212
Query: 668 GVVLVSHD 675
+V ++HD
Sbjct: 213 TIVFITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 167 TIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217
I+N S G+ L + S+ + G+ LVGPNG GKSTLL+ +A P
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP 51
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 33/205 (16%)
Query: 196 LVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREE 255
L+GP+G GKS+LL++L + +P++ + + D + + +LR
Sbjct: 33 LLGPSGAGKSSLLRVL--NLLEMPRSGTLNIAGNHF--DFSKTPSD-----KAIRELRRN 83
Query: 256 VA------SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGF 309
V +L +V + L E ++ L D A A+A K+L L
Sbjct: 84 VGMVFQQYNLWPHLTVQ------------QNLIEAPCRVLGLSKDQALARAEKLLERLRL 131
Query: 310 TKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD----LRAVLWLEEYLCR 365
R SGG + R+++ARAL ++P +LL DEPT LD + V + E L
Sbjct: 132 K-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE-LAE 189
Query: 366 WKKTLVVVSHDRDFLNTVCTEIIHL 390
T V+V+H+ + + ++++
Sbjct: 190 TGITQVIVTHEVEVARKTASRVVYM 214
|
Length = 242 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 42/215 (19%)
Query: 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239
+L+ S + G+ LVGP+G GKST++ LL P+ VLL + + + +
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALL--ENFYQPQGGQVLLDGKPISQYEHKYL 86
Query: 240 QAVVSA--HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAE 297
+ VS E ++ R SLQ++ + LQ + +
Sbjct: 87 HSKVSLVGQEPVLFAR----SLQDNIAYG---------------------LQSCSFECVK 121
Query: 298 AQASKILAGLGFTKEMQ-------GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNH 350
A K A F E+ G SGG + R+++ARAL P +L+LDE T+
Sbjct: 122 EAAQKAHAH-SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180
Query: 351 LDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTV 383
LD + +++ L W ++T++V++H L+TV
Sbjct: 181 LDAESEQQVQQALYDWPERRTVLVIAHR---LSTV 212
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 286 EKLQILGS--DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
E L G +AA A+A ++LA L + + P +FSGG + R+++AR +LL
Sbjct: 113 EPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILL 172
Query: 344 LDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEII 388
LDEPT LD + V+ L L+ + HD + V ++
Sbjct: 173 LDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVM 220
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 286 EKLQILG--SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
E L G + A A+A+ +L L + + +FSGG + R+++AR V +LL
Sbjct: 116 EPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILL 175
Query: 344 LDEPTNHLDL--RAVLWLEEYLCRWKKT----LVVVSHDRDFLNTVCTEII 388
LDEPT LD RAV+ +E L R K LV + HD + V ++
Sbjct: 176 LDEPTASLDATNRAVV-VE--LIREAKARGAALVGIFHDEEVREAVADRLL 223
|
Length = 235 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
SGG + R+ +ARAL V+P +LLLDEPT+ LD A +EE + KK T+V+V+H
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
SGG + R+ +ARAL V+P +LL+DEPT+ LD + L +EE + KK T+V+V+H
Sbjct: 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 33/195 (16%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG--------------EVRRSQ 558
L +V G V +GPNGAGKST + ++ G L P G EV+R+
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRN- 76
Query: 559 KLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHN 612
IG +H ++D+ E L+ G+ ++ V + GL
Sbjct: 77 ---IGYLPEHNPLYLDMYVRE------YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ 127
Query: 613 HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VV 670
H I +LS G + RV + P +L+LDEPT LD + + + + ++
Sbjct: 128 H-KKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTII 186
Query: 671 LVSHDSRLISRVCDD 685
L +H + + +CD
Sbjct: 187 LSTHIMQEVEAICDR 201
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 22/170 (12%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV- 554
++L V+ + N L D+++ I G V ++GP+G GK+T L ++AG PT G +
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 555 ---RRSQKLR-----IGRYSQHFVDL---LTMEETPVSYLLRLH--PDQEGLSKQEAVRA 601
R L I Q++ L +T+ + +++ L+L P E + V
Sbjct: 59 IGGRDVTDLPPKDRDIAMVFQNYA-LYPHMTVYDN-IAFGLKLRKVPKDEIDERVREVAE 116
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
L L +LSGGQ+ RV + +P + L+DEP ++LD
Sbjct: 117 LLQIEHLLDRK----PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 3e-08
Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 30/203 (14%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+++L VS+SYP+ L ++++ I G + I+G NG+GKSTL L G L P +G+V
Sbjct: 1 MIRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 555 ----------RRSQKLR--IGRYSQH----FVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598
+ Q +R +G Q+ FV T+EE L P+ L E
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR-TVEED-----LAFGPENLCLPPIEI 113
Query: 599 ---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
V L + GL + H +P LSGGQ V I +P L+ DE T+ LD S
Sbjct: 114 RKRVDRALAEIGLEKYRHRSP-KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
Query: 656 DALAD---ALDEFTGGVVLVSHD 675
A+ + L E +V ++H+
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHN 195
|
Length = 274 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 3e-08
Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 23/242 (9%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
K+ L +++I K L+G +G GKST L+ + K ID L+ E+ G D
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK-IDGLV---EIEGKD-- 68
Query: 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAE 297
++++V LR+ V + +V + ++ + A KL + I D E
Sbjct: 69 ------VKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA-PKLHGM-----IKNKDEEE 116
Query: 298 AQASKILAGLGFTKEMQGRPTK---SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
A L +G +E++ + + + SGG + R+ +ARAL ++P LLLLDEPT+ LD
Sbjct: 117 ALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPI 176
Query: 355 AVLWLEEYLCRWKKTL--VVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQR 412
+ +EE L L ++V+H+ V H +L + + + FE+ +++
Sbjct: 177 SSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEK 236
Query: 413 RK 414
K
Sbjct: 237 TK 238
|
Length = 246 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 40/233 (17%)
Query: 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244
+ + G+ ++GP+G GKSTLL L+A P + ++L+ + +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIA--GFETPASGEILINGVDHTASPPA------- 69
Query: 245 AHEELVKLREEVASL--QNS--TSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
V+ L +N+ + ++ G KL ++ ++ +AA AQ
Sbjct: 70 --------ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE-QREKV---EAAAAQ- 116
Query: 301 SKILAGL-GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRA-V 356
GL GF K + G SGG R R++LAR L + +LLLDEP + LD LRA +
Sbjct: 117 ----VGLAGFLKRLPG----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168
Query: 357 LWLEEYLCRWKK-TLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESG 408
L L LC +K TL++V+H + + ++ L + ++ +G+ + SG
Sbjct: 169 LALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLSG 220
|
Length = 231 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRD 378
SGG + R+++ARA+ QP +LL DEPT +LD ++ L E + R T+++ +HD +
Sbjct: 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE 198
Query: 379 FLNTVCTEIIHLHDQKLHFYRG 400
+N + ++ L D +L
Sbjct: 199 LVNRMRHRVLALEDGRLVRDES 220
|
Length = 223 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 55/211 (26%), Positives = 80/211 (37%), Gaps = 37/211 (17%)
Query: 155 GQDDADANVKDITIDNFSVAARG---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
G+ D + K + R K LLK+ S G+ ++G +G GK+TL+ L
Sbjct: 12 GRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNAL 71
Query: 212 AWRKIP-VPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVK---LREEVA-----SLQNS 262
A+R V + VLL + + AI A V + + +RE + +
Sbjct: 72 AFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR 131
Query: 263 TSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTKEMQGRPTKSF 321
+ EK + E LQ LG A T+ K
Sbjct: 132 VTKK------------EKRERVDEVLQALGLRKCAN------------TRIGVPGRVKGL 167
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SGG R R++ A L P LL DEPT+ LD
Sbjct: 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 40/226 (17%)
Query: 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234
+ G LK ++ I G+ ++G NG GKSTL + L I P + +L + +
Sbjct: 16 SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNL--NGILKPSSGRILFDGKPI--- 70
Query: 235 DRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKL--AELYEKLQI-- 290
D S + L+KLRE V G D +L A +Y+ +
Sbjct: 71 DYSR--------KGLMKLRESV--------------GMVFQDPDNQLFSASVYQDVSFGA 108
Query: 291 ----LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDE 346
L D + L G ++ +PT S G + R+++A L ++P +L+LDE
Sbjct: 109 VNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167
Query: 347 PTNHLDLRAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTEII 388
PT LD V + + L +K T+++ +HD D + C +
Sbjct: 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVF 213
|
Length = 283 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 51/165 (30%), Positives = 70/165 (42%), Gaps = 48/165 (29%)
Query: 523 GTRVAIVGPNGAGKSTLL---NLLAGDLSPTEGEV----------------------RRS 557
G ++I+G +G+GKST L N L P+ G + R+
Sbjct: 32 GDVISIIGSSGSGKSTFLRCINFLE---KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQL 88
Query: 558 QKLR--IGRYSQHF------VDLLTMEETPVSYLLRLHPDQEGLSKQEAV---RAKLGKF 606
Q+LR +G QHF L + E PV L G+SK EA+ L K
Sbjct: 89 QRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--------GVSKAEAIERAEKYLAKV 140
Query: 607 GLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
G+ P A LSGGQ+ RV +P ++L DEPT+ LD
Sbjct: 141 GIAEKADAYP-AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD 184
|
Length = 256 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 51/209 (24%), Positives = 101/209 (48%), Gaps = 30/209 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L ++ ++ G +A+ G G+GKS+LL ++ G+L P+EG+++ S ++ G
Sbjct: 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPG 501
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
+ + L+ +E + +++ +E ++ E + LG+ G+ LSG
Sbjct: 502 TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI----------TLSG 551
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVV-LVSHDSRLI-- 679
GQ+AR+ + LLD P HLD+ + + F + L+S+ +R++
Sbjct: 552 GQRARISLARAVYKDADLYLLDSPFTHLDVVT------EKEIFESCLCKLMSNKTRILVT 605
Query: 680 SRVCDDEERSEIWVVENGTVSRFPGTFEE 708
S++ ++ +I ++ G V F GTF E
Sbjct: 606 SKLEHLKKADKILLLHEG-VCYFYGTFSE 633
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 46/228 (20%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ +++ +V+ R L S + G+ LVGPNG GKSTLL +A +L
Sbjct: 1 MQLNDVAVSTR----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMA----------GLL 46
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA-EL 284
+ + + EL + R ++ Q A + L
Sbjct: 47 PGSGSIQFAGQPLEAW---SAAELARHRAYLSQQQTPPF---------AMPVFQYLTLHQ 94
Query: 285 YEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ--PT-- 340
+K + +A + +++ LG ++ GR SGG R+ LA A+ +Q P
Sbjct: 95 PDKTRT---EAVASALNEVAEALGLDDKL-GRSVNQLSGGEWQRVRLA-AVVLQVWPDIN 149
Query: 341 ----LLLLDEPTNHLDLRAVLWLE---EYLCRWKKTLVVVSHDRDFLN 381
LLLLDEP N LD+ L+ LC+ +V+ SHD LN
Sbjct: 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD---LN 194
|
Length = 248 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 42/245 (17%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
VK++++ F A + + S + G+ G+VG +G GKS L K + +P P
Sbjct: 4 VKNLSVS-FPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIM-GLLPKPNAR 61
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHE-ELVKLR-EEVAS-LQNSTS-------VDGEEDGD 272
+V E++ D + ++S E EL K+R +E+A Q+ + +
Sbjct: 62 ---IVGGEILFDGKD----LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTI------- 107
Query: 273 DANDAGEKLAELYEKLQILGSDA-AEAQASKILAGLGFTKEMQGRPTKS----FSGGWRM 327
G+++AE+ S A+ +A ++L +G R KS SGG R
Sbjct: 108 -----GDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGMRQ 160
Query: 328 RISLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKT-LVVVSHDRDFLNTV 383
R+ +A AL + P LL+ DEPT LD+ +L L + L R K T L++++HD + +
Sbjct: 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEI 220
Query: 384 CTEII 388
+
Sbjct: 221 ADRVA 225
|
Length = 316 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 288 LQILGSDAAEAQASKILAGLGFTK--EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
L++ AE + ++ L + R SGG + R+++ARAL +P +LLLD
Sbjct: 97 LRLKKLPKAEIKE-RVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155
Query: 346 EPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHD 376
EP LDL+ ++ L R +K T V V+HD
Sbjct: 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 5e-08
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 41/240 (17%)
Query: 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVE 228
+ ++ + ++ +V I G ++GPNG GKSTLL+ L+ ++ P + V L
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS--RLMTPAHGHVWL-- 66
Query: 229 QEVVGDDRSAIQAVVSAHEELVKLREEVAS-----LQNSTSVDGEEDGD-DANDAGEKLA 282
D IQ S +EVA QN+T+ GD + +
Sbjct: 67 ------DGEHIQHYAS---------KEVARRIGLLAQNATT-----PGDITVQELVARGR 106
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
++ L E +K + G T + + + SGG R R +A L + ++
Sbjct: 107 YPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIM 165
Query: 343 LLDEPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVC---TEIIHLHDQKL 395
LLDEPT LD+ + L E L + TL V HD LN C + +I L + K+
Sbjct: 166 LLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD---LNQACRYASHLIALREGKI 222
|
Length = 265 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD- 352
+A+ + L +G +P + SGG + R++LARAL +P +LLLDEP + LD
Sbjct: 111 AEIKARVEEALELVGLEGFADRKPHQ-LSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 353 -LR--AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
LR L+E T V V+HD++ + I ++D ++
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRI 215
|
Length = 352 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 19/234 (8%)
Query: 167 TIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL 226
++ N ++ K++L ++ I + +GP+G GKST L+ VP
Sbjct: 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPN----CK 62
Query: 227 VEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE 286
V+ E+ D V S +V LR +V + + + D+ G KL L +
Sbjct: 63 VKGELDIDGID----VYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVA-YGPKLHGLAK 117
Query: 287 KLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS---FSGGWRMRISLARALFVQPTLLL 343
+ L ++ L +G +E+ R S SGG + R+ +ARA+ V+PT+LL
Sbjct: 118 NKKKLDEIVEKS-----LTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLL 172
Query: 344 LDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+DEP + LD A +E + KK T++VV+H V + ++
Sbjct: 173 MDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226
|
Length = 251 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 7e-08
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFL 380
SGG R R+ +ARAL P++L+LDE T+ LD +++ L R T ++V+H R L
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH-R--L 672
Query: 381 NTV--CTEIIHL 390
+T+ C EII L
Sbjct: 673 STIRDCDEIIVL 684
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 7e-08
Identities = 56/223 (25%), Positives = 87/223 (39%), Gaps = 47/223 (21%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ +++ + + R L S + G+ LVGPNG GKSTLL +A +
Sbjct: 4 MQLNDVAESTR----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMA----------GMT 49
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
+ + SA E L + R ++ Q ++
Sbjct: 50 SGSGSIQFAGQPLEAW--SATE-LARHRAYLSQQQTPPF----------------AMPVW 90
Query: 286 EKLQILGSDAAEAQA-SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT---- 340
L + D + + + L ++ GR T SGG R+ LA A+ +Q T
Sbjct: 91 HYLTLHQPDKTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRVRLA-AVVLQITPDAN 148
Query: 341 ----LLLLDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSHD 376
LLLLDEP N LD+ A+ L LC+ +V+ SHD
Sbjct: 149 PAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
|
Length = 248 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 7e-08
Identities = 51/202 (25%), Positives = 78/202 (38%), Gaps = 33/202 (16%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---- 555
VS Y L ++ I G +V IVG G+GKS+LL L + + G +
Sbjct: 7 NVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV 66
Query: 556 -----RSQKLR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV-----RAKL 603
LR I Q D + T +R + D G E + R L
Sbjct: 67 DISKIGLHDLRSRISIIPQ---DPVLFSGT-----IRSNLDPFGEYSDEELWQALERVGL 118
Query: 604 GKFGLPSHNHL-TPIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
+F L T + + LS GQ+ + + K IL+LDE T +D ++ +
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 659 ADAL-DEFTGGVVL-VSHDSRL 678
+ + F VL ++H RL
Sbjct: 179 QKTIREAFKDCTVLTIAH--RL 198
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 8e-08
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 39/230 (16%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
G E LK + + G+ L+GPNG GKSTL L + I P + +VL+ + + D +
Sbjct: 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLF--LHFNGILKPTSGEVLIKGEPIKYDKK 71
Query: 237 SAIQAVVSAHEELVKLREEVA-SLQNSTSVDGEEDGDD---ANDAGEKLAELYEKLQI-L 291
S L+++R+ V QN DD A E +A + L + L
Sbjct: 72 S-----------LLEVRKTVGIVFQNP---------DDQLFAPTVEEDVA--FGPLNLGL 109
Query: 292 GSDAAEAQASKILAGLGFTKEMQG---RPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
+ E + + L +G M+G +P SGG + R+++A L ++P +++LDEPT
Sbjct: 110 SKEEVEKRVKEALKAVG----MEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165
Query: 349 NHLDLRAVLWLEEYLCRWKK---TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ LD + + L K T+++ +HD D + ++ + D K+
Sbjct: 166 SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 8e-08
Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 27/197 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTL---LNL---------LAGDLSPTEGEVRRSQ-- 558
L ++++ I AI+GP+G GKST LNL L G+++ + + +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 559 --KLR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL--PSHN 612
+LR IG Q V+Y R+H + QE V L L +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 613 HL-TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALDE-FTG 667
L T LSGGQ+ R+ + P +LL+DEPT+ LD S I+ L L E +T
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT- 206
Query: 668 GVVLVSHDSRLISRVCD 684
+V+V+H+ + +RV D
Sbjct: 207 -IVIVTHNMQQAARVSD 222
|
Length = 259 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 8e-08
Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 67/345 (19%)
Query: 146 IGSRTSVLEGQDDADA--NVKDITIDN--FSVAARGK-ELLKSTSVRISHGKRYGLVGPN 200
I +R ++E DD ++K I N F R E+ K + ++ GK Y VG +
Sbjct: 361 IINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGES 420
Query: 201 GMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD-----RSAIQAVVSAHEELV----- 250
G GKST+LKL+ ++ P D+++ + + D RS I VVS L
Sbjct: 421 GCGKSTILKLI--ERLYDPTEGDIIINDSHNLKDINLKWWRSKI-GVVSQDPLLFSNSIK 477
Query: 251 -KLREEVASLQN--STSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL 307
++ + SL++ + S EDG+D+ + K K +D + S L +
Sbjct: 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL--I 535
Query: 308 GFTKEMQ-------------------------------GRPTKSFSGGWRMRISLARALF 336
K Q G SGG + RIS+ARA+
Sbjct: 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII 595
Query: 337 VQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK----KTLVVVSHDRDFLNTV--CTEIIHL 390
P +L+LDE T+ LD ++ +++ + K + ++++H L+T+ I L
Sbjct: 596 RNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR---LSTIRYANTIFVL 652
Query: 391 HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGN 435
+++ RG+ D + E K+ + K + N
Sbjct: 653 SNRE----RGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNN 693
|
Length = 1466 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 8e-08
Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 37/247 (14%)
Query: 164 KDITIDNFSVAARGK-----ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV 218
KDI +DN S K + L +TS+ K ++G G GKST+++L
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQL-------- 56
Query: 219 PKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDA- 277
+ + Q +VGD AI A + +E+ +LR+E+ + ++ + + A
Sbjct: 57 TNGLIISETGQTIVGD--YAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAF 114
Query: 278 -----GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLA 332
GE E Y+K+ ++L + ++ R SGG + R++LA
Sbjct: 115 GPVNLGENKQEAYKKV------------PELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162
Query: 333 RALFVQPTLLLLDEPTNHLDLRA---VLWLEEYLCR-WKKTLVVVSHDRDFLNTVCTEII 388
+ + L+LDEPT LD + + L E L + +KK +++V+H+ D + + E+I
Sbjct: 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVI 222
Query: 389 HLHDQKL 395
+H+ K+
Sbjct: 223 VMHEGKV 229
|
Length = 289 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 9e-08
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 166 ITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
I N FS R K +LK S+ I G++ +VGP+G GKSTLLKLL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 9e-08
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 27/208 (12%)
Query: 171 FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230
F R + L S S+ I G+ LVG +G GKSTL+ L+ + P + +LL
Sbjct: 338 FRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILL---- 391
Query: 231 VVGDDRSAIQAVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQ 289
D + L LR +VA + Q+ + AN+ E ++ +
Sbjct: 392 ----DGHDLA-----DYTLASLRRQVALVSQDVVLFNDTI----ANNIAYGRTEQADRAE 438
Query: 290 ILGSDAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
I A A A + L G + G SGG R R+++ARAL +L+LDE
Sbjct: 439 IE-RALAAAYAQDFVDKLPLGLDTPI-GENGVLLSGGQRQRLAIARALLKDAPILILDEA 496
Query: 348 TNHLDL---RAVLWLEEYLCRWKKTLVV 372
T+ LD R V E L + + TLV+
Sbjct: 497 TSALDNESERLVQAALERLMQGRTTLVI 524
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 45/231 (19%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
E+LK S+ I G+ +VG +G GKSTL+ +L P V G D +
Sbjct: 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG-------TYRVAGQDVAT 74
Query: 239 IQAVVSAHEELVKLREE-----------VASLQNSTSVDGEEDGDDANDAGEKLAELYEK 287
+ A + L +LR E ++ L + +V+ A AG
Sbjct: 75 LDA-----DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVP-----AVYAG--------- 115
Query: 288 LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
L +A ++L LG ++ +P++ SGG + R+S+ARAL ++L DEP
Sbjct: 116 ---LERKQRLLRAQELLQRLGLEDRVEYQPSQ-LSGGQQQRVSIARALMNGGQVILADEP 171
Query: 348 TNHLDLRA---VLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
T LD + V+ + L T+++V+HD +I + D ++
Sbjct: 172 TGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQA-ERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 527 AIVGPNGAGKSTLLNLL--AGDLSP---------TEGEVRRSQKLRIGRYSQHFVDLLTM 575
AI+GP+G GK+TLL + D P +G+ +L + Y + V ++
Sbjct: 33 AIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKK-VGMVFQ 91
Query: 576 EETP--------VSYLLRLHPDQEGLSKQEAVRAKLGKFGL---PSHNHLTPIAKLSGGQ 624
+ TP V++ R+H + V L K L P +LSGGQ
Sbjct: 92 KPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQ 151
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALADALDEFTGGVVLVSHDSRLISR 681
+ R+ +P ++LLDEPT+ LD Q I+ L + L E +V+V+H+ R
Sbjct: 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENY-TIVIVTHNIGQAIR 210
Query: 682 VCD 684
+ D
Sbjct: 211 IAD 213
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 26/219 (11%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I N V ++K ++I + L+GP+G GKSTLL+ R + + +
Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFN-RLLELNE----- 58
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVA-------SLQNSTSVDGEEDGDDANDAG 278
E V G+ R + + S + +++R EV + T D G N
Sbjct: 59 --EARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLV 116
Query: 279 EKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338
+ EL E+++ AA K + P+ + SGG R R+ +ARAL ++
Sbjct: 117 KSKKELDERVEWALKKAALWDEVK--------DRLNDYPS-NLSGGQRQRLVIARALAMK 167
Query: 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
P +LL+DEPT ++D +EE L KK T+V+V+H
Sbjct: 168 PKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 30/195 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L D + G+ A+VG NG+GKSTL L G + G++ + ++ V
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 573 LTM-EETPVSY-----------------LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL 614
+ EE S+ LR ++ ++ V A L + + H
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRH- 137
Query: 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS----IDALADALDEFTGGVV 670
I +LSGGQK RV + ++LLDEP +D+++ I L + DE G +
Sbjct: 138 RQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE--GKTM 195
Query: 671 LVS-HDSRLISRVCD 684
LVS H+ ++ CD
Sbjct: 196 LVSTHNLGSVTEFCD 210
|
Length = 272 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 491 LTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT 550
+ P + + + S+ L V++ + G A++G NGAGKSTL+ +L+G PT
Sbjct: 1 MATPYISMAGIGKSFGPVH--ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT 58
Query: 551 EGEV------------RRSQKLRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLS-- 594
+G + + + +L IG Q +D LT+ E Y+ R H ++
Sbjct: 59 KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLEN--LYIGR-HLTKKVCGVN 115
Query: 595 ----KQEAVRAK--LGKFGLPSHNHL-TPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647
++ VRA L + GL L +A LS K + M ++++DEPT
Sbjct: 116 IIDWREMRVRAAMMLLRVGL--KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPT 173
Query: 648 NHLDMQSIDALADALDEFTG---GVVLVSHDSRLISRVCD 684
+ L + +D L +++ +V +SH I R+CD
Sbjct: 174 SSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICD 213
|
Length = 510 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 28/223 (12%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
+ I + + S + ++ S+ I K ++GP+G GKST +K L I
Sbjct: 5 IPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTL--------NRI 56
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASL---QNSTSVDGEEDGDDANDA-G 278
L +V G Q + + +LR ++ + N + E N A G
Sbjct: 57 SELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYE-----NVAYG 111
Query: 279 EKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS---FSGGWRMRISLARAL 335
+++ + + + L G +E++ + KS SGG + R+ +ARAL
Sbjct: 112 VRISAKLPQADL------DEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165
Query: 336 FVQPTLLLLDEPTNHLDLRAVLWLEEYL--CRWKKTLVVVSHD 376
++P +LL+DEP + LD A + +EE + R + T+ +V+H+
Sbjct: 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208
|
Length = 259 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVV 373
+ SGG + R+ +ARAL V+P +LL+DEPT+ LD + L +EE + KK T+V+V
Sbjct: 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIV 201
Query: 374 SHD 376
+H+
Sbjct: 202 THN 204
|
Length = 250 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 34/189 (17%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---------------RRS 557
++D + ++ G I+G +G+GKSTL+ LL + PT GE+ R
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 558 QKLRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHN 612
++ +I Q F L T+ E V++ L + +G+ K E L GL +
Sbjct: 104 RRKKISMVFQSFALLPHRTVLEN-VAFGLEV----QGVPKAEREERALEALELVGLEGYA 158
Query: 613 HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD------MQSIDALADALDEFT 666
P +LSGG + RV + P ILL+DE + LD MQ D L + +
Sbjct: 159 DKYP-NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQ--DELLELQAKLK 215
Query: 667 GGVVLVSHD 675
+V ++HD
Sbjct: 216 KTIVFITHD 224
|
Length = 386 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 28/201 (13%)
Query: 510 DFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR--YS 566
DFK L+++++ I + A++GP+G GKST L L EG + G+ YS
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78
Query: 567 QHFVDLLTME-------ETP----------VSYLLRLHPDQEGLSKQEAVRAKLGKFGLP 609
+F D+L + +TP +SY ++H ++ E V L K L
Sbjct: 79 NNF-DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALW 137
Query: 610 SH--NHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALD 663
+ + L A LSGGQ+ R+ +P+++L+DEPT+ LD S I+ L L
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK 197
Query: 664 EFTGGVVLVSHDSRLISRVCD 684
E + +++V+H+ + R+ D
Sbjct: 198 E-SYTIIIVTHNMQQAGRISD 217
|
Length = 254 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 61/244 (25%)
Query: 486 PEPTELTPPLLQL--IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKS----TL 539
P + LL + + V+FS P+ + ++D++ + G + IVG +G+GKS L
Sbjct: 3 PLAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFAL 62
Query: 540 LNLLAGDLSPTEGEVR------------RSQKLRIGRYSQHFVDLLT------------M 575
+ LLA + G KLR + S F D +T M
Sbjct: 63 MGLLAAN-GRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM 121
Query: 576 EETPVSYLLRLHPDQEGLSKQEA----VRAKLGKFGLPS-------HNHLTPIAKLSGGQ 624
E +L LH +G+SK EA VR L +P + H + SGG
Sbjct: 122 E------VLMLH---KGMSKAEAFEESVRM-LDAVKMPEARKRMKMYPH-----EFSGGM 166
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLDM----QSIDALADALDEFTGGVVLVSHDSRLIS 680
+ RV+ + +P +L+ DEPT LD+ Q + L + EF +++++HD +++
Sbjct: 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVA 226
Query: 681 RVCD 684
+CD
Sbjct: 227 GICD 230
|
Length = 330 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI----DVLLVEQEVVGDDR 236
++ + V I + G +GP+G GKST+L+ L R + K V + Q+V G
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLN-RMNDLVKGFRFEGHVHFLGQDVYGKGV 82
Query: 237 SAIQAVVSAHEELVKLREEVASLQNSTSVD-GEEDGDDANDAGEKLAELYEKLQILGSDA 295
+ VV + +V + S+ +V G D G+++ + +
Sbjct: 83 DPV--VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK 140
Query: 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA 355
+ + S + S SGG + R+ +ARA+ +P +LLLDEP + LD A
Sbjct: 141 DKLKVSGL----------------SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIA 184
Query: 356 VLWLEEYLCRWKK--TLVVVSHD 376
+EE + KK T+ +V+H+
Sbjct: 185 TRRVEELMVELKKDYTIALVTHN 207
|
Length = 261 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 65/214 (30%), Positives = 88/214 (41%), Gaps = 61/214 (28%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL------NLLAGDLSPTEGEVR-RSQKL----- 560
L D+ + I A +GP+G GKSTLL N L D EGE+R Q +
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLV-DNCRIEGEIRLDGQNIYDKKV 99
Query: 561 -------RIGRYSQHFVDLLTMEETP--------VSYLLRLHPDQEGLSKQ----EAVRA 601
R+G Q P V Y LRL G++ + EAV
Sbjct: 100 DVAELRRRVGMVFQ--------RPNPFPKSIYENVVYGLRLQ----GINNRRVLDEAVER 147
Query: 602 KLGKFGL-------PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 654
L L N LSGGQ+ R+V +P +LLLDEPT+ LD S
Sbjct: 148 SLRGAALWDEVKDRLHENAFG----LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203
Query: 655 ---IDALADALDE-FTGGVVLVSHDSRLISRVCD 684
I+ L L +T +V+V+H+ + +RV D
Sbjct: 204 TLKIEELITELKSKYT--IVIVTHNMQQAARVSD 235
|
Length = 272 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 46/182 (25%)
Query: 527 AIVGPNGAGKSTLLN----LLAGDLSPT------------EGEVRRSQKLRIGRYSQHFV 570
IVG NGAGK+T++ L G+L P EGEVR KL +
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK-- 83
Query: 571 DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA---- 626
T+ + + Q L L + SGG+K
Sbjct: 84 -KYTITRSLAIL------ENVIFCHQGESNWPL----------LDMRGRCSGGEKVLASL 126
Query: 627 --RVVFTSISMSKPHILLLDEPTNHLDMQSID-ALADALDEFTGG----VVLVSHDSRLI 679
R+ S IL LDEPT +LD ++I+ +LA+ ++E +++++HD L+
Sbjct: 127 IIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELV 186
Query: 680 SR 681
Sbjct: 187 DA 188
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 28/155 (18%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---------RRSQKLRIGRY 565
++++ I GT V ++GP+G GK+T+L L+AG PTEG++ R Q+ I
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83
Query: 566 SQHFVDLLTME-ETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA------ 618
Q + M V Y L++ G+ K+E R + K L L +A
Sbjct: 84 FQSYALFPHMSLGENVGYGLKM----LGVPKEE--RKQRVKEAL----ELVDLAGFEDRY 133
Query: 619 --KLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
++SGGQ+ RV + KP +LL DEP ++LD
Sbjct: 134 VDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 51.2 bits (124), Expect = 2e-07
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
I + N S K L S+ + G+ YGL+GPNG GK+TL+K++
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL 47
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 284 LYEKLQI--LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
L+E I L + + ++L +G +E R SGG R RI +ARAL + P L
Sbjct: 71 LFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKL 130
Query: 342 LLLDEPTNHLDL 353
++ DEP + LD+
Sbjct: 131 IVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 51/201 (25%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV------- 218
+ + N S+ G LL + + I+ G+ L+GP+G GKSTLL +
Sbjct: 3 LCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62
Query: 219 ---PKNIDVLLVEQEVVG----DDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDG 271
+ +D+L Q +G D +S + L+ ++ G
Sbjct: 63 WLNEQRLDMLPAAQRQIGILFQDALLFPH--LSVGQNLL--------FALPATLKGNARR 112
Query: 272 DDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331
+ AN A E+ L G + + SGG R R++L
Sbjct: 113 NAANAALERSG---------------------LDGAF------HQDPATLSGGQRARVAL 145
Query: 332 ARALFVQPTLLLLDEPTNHLD 352
RAL QP LLLDEP + LD
Sbjct: 146 LRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDRD 378
SGG R RI+LARAL+ P L++LDEP ++LD L + K T+VV++H R
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH-RP 532
Query: 379 FLNTVCTEIIHLHDQKLHFY 398
+I+ L D ++ +
Sbjct: 533 SALASVDKILVLQDGRIAAF 552
|
Length = 580 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 39/213 (18%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
G + LK S+ I G + L+GPNG GKSTLL L I +P+ V ++ +EV
Sbjct: 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLL--LHLNGIYLPQRGRVKVMGREV----- 69
Query: 237 SAIQAVVSAHEELVK-LREEVASLQNSTSVDGEEDGDD---ANDAGEKLAELYEKLQILG 292
+ E K +R +V + +D DD ++ + +A + L
Sbjct: 70 ---------NAENEKWVRSKVGLVF--------QDPDDQVFSSTVWDDVAFGPVNMG-LD 111
Query: 293 SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
D E + + L + + + +P S G + R+++A L + P +++LDEP +LD
Sbjct: 112 KDEVERRVEEALKAVRM-WDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170
Query: 353 ------LRAVLWLEEYLCRWKKTLVVVSHDRDF 379
L +L L KT++V +HD D
Sbjct: 171 PRGQETLMEILDR---LHNQGKTVIVATHDVDL 200
|
Length = 274 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLE--E 361
GL +E R SGG R R++LAR+L +P LLLLDEP LD LR + LE +
Sbjct: 135 GLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD 194
Query: 362 YLCRWKKTLVVVSHDRD 378
L R T V+V+HD++
Sbjct: 195 ILERVGVTCVMVTHDQE 211
|
Length = 377 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
+ AQ +++A LG + P SGG + R+++ RAL P LLL+DEP LDL
Sbjct: 103 KSMRAQFDQLVALLGIEHLLDRYPGT-LSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
Query: 354 ---RAVLWLEEYLCR-WKKTLVVVSHDRDFLNTVCTEIIHLHDQ 393
R +L E L ++ VSH D E++ L D+
Sbjct: 162 PRKREILPYLERLRDEINIPILYVSHSLD-------EVLRLADR 198
|
Length = 352 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-07
Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 29/198 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL------NLLAGDLSPTEGEVRRSQ-------- 558
L +D+ + A++GP+G GKST L N L ++ T R Q
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 559 --KLR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL----PS 610
+LR +G Q V Y LRL ++ EAV L + +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFT 666
H H + ++ LSGGQ+ RV + KP ++LLDEPT+ LD S + + L D++T
Sbjct: 141 HLHESALS-LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYT 199
Query: 667 GGVVLVSHDSRLISRVCD 684
++LV+H SR+ D
Sbjct: 200 --IILVTHSMHQASRISD 215
|
Length = 252 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-07
Identities = 50/213 (23%), Positives = 107/213 (50%), Gaps = 14/213 (6%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I +N ++ + L + +++I L+GP+G GKST L+ L + ++ +
Sbjct: 8 IETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLN----RMNDLVEGI 63
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
+E V+ + ++ + S + ++++LR ++ + + + D+ + G K+
Sbjct: 64 KIEGNVIYEGKN----IYSNNFDILELRRKIGMVFQTPNPFLMSIYDNIS-YGPKIHGTK 118
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
+K ++ D Q+ K A K+ S SGG + R+ +AR L ++P ++L+D
Sbjct: 119 DKKKL---DEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMD 175
Query: 346 EPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
EPT+ LD + +EE + K+ T+++V+H+
Sbjct: 176 EPTSALDPISTGKIEELIINLKESYTIIIVTHN 208
|
Length = 254 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 46/202 (22%)
Query: 520 IDMGTRVAIVGPNGAGKSTLLNLL------------------------AGDLSPTEGEVR 555
+ G +VA++GP+G+GKST+L +L G L P + +
Sbjct: 23 VAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82
Query: 556 RSQKLRIGRYSQHF------VDLLTMEETPVSYLLRLHPDQEGLSKQEA-VRAK--LGKF 606
R + +IG Q F L + E PV L G+++ EA RA L
Sbjct: 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--------GMARAEAEKRAMELLDMV 134
Query: 607 GLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ----SIDALADAL 662
GL P A+LSGGQ+ RV +P ++L DE T+ LD + ++ +
Sbjct: 135 GLADKADHMP-AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLA 193
Query: 663 DEFTGGVVLVSHDSRLISRVCD 684
E ++LV+H+ D
Sbjct: 194 SEHDLTMLLVTHEMGFAREFAD 215
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 59/251 (23%), Positives = 114/251 (45%), Gaps = 29/251 (11%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
L + ++ G++ L+GP+G GKST+L++L + P + + VE E +
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE---PIDEGQIQVEGEQLYHMPGRNG 72
Query: 241 AVVSAHEE-LVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQ 299
+V A E+ L ++R ++ + S ++ + + + E + + AE +
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKT------VLDNVTEAPVLVLGMARAEAEKR 126
Query: 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD---LRAV 356
A ++L +G + P + SGG + R+++ARAL ++P ++L DE T+ LD + V
Sbjct: 127 AMELLDMVGLADKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEV 185
Query: 357 LWLEEYLCRWKK-TLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNF-------DDFESG 408
L + L T+++V+H+ F D+ F +G + F
Sbjct: 186 LNVIRRLASEHDLTMLLVTHEMGFAREFA-------DRVCFFDKGRIVEQGKPDEIFRQP 238
Query: 409 YEQRRKEMNKK 419
E+R +E K
Sbjct: 239 KEERTREFLSK 249
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 27/204 (13%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
+K S+ I G+ + ++G +G GKST+++LL ++ P VL+ ++ + ++
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
V +++ + + A + + T +D G +++ G +A E +
Sbjct: 102 EV--RRKKIAMVFQSFALMPHMTVLDNTAFG----------------MELAGINAEERRE 143
Query: 301 SKI--LAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLW 358
+ L +G P + SGG R R+ LARAL + P +LL+DE + LD
Sbjct: 144 KALDALRQVGLENYAHSYPDE-LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
Query: 359 LEEYLCRW----KKTLVVVSHDRD 378
+++ L + ++T+V +SHD D
Sbjct: 203 MQDELVKLQAKHQRTIVFISHDLD 226
|
Length = 400 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 65/247 (26%), Positives = 97/247 (39%), Gaps = 50/247 (20%)
Query: 492 TPPLLQLIEVSFSYPNREDFKLSDVDV--GIDM----GTRVAIVGPNGAGKSTLLNLLAG 545
PPLL +S Y S V+V GID G A++G NGAGKSTL+ ++AG
Sbjct: 8 APPLLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59
Query: 546 DLSPTEGEVR------------RSQKLRIGRYSQ--HFVDLLTMEETPVSYLLRLHPDQE 591
+ P G + ++ +L I Q L+++E + L L Q
Sbjct: 60 IVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKE---NILFGLPKRQA 116
Query: 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS---MSKPHILLLDEPTN 648
+ K + + A LG L + + A I M IL+LDEPT
Sbjct: 117 SMQKMKQLLAALG-------CQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA 169
Query: 649 HLDMQSIDAL---ADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705
L + L L G+V +SH I ++ D I V+ +GT++ G
Sbjct: 170 SLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLAD-----RISVMRDGTIA-LSGK 223
Query: 706 FEEYKED 712
+ D
Sbjct: 224 TADLSTD 230
|
Length = 510 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+T N + A +G+ +++ S+ ++ G+ GL+GPNG GK+T ++ VP++ +
Sbjct: 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG---IVPRDAGNI 60
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
+++ E D S + A + L +E AS+ SV + L +
Sbjct: 61 IIDDE----DISLLPLHARARRGIGYLPQE-ASIFRRLSV------------YDNLMAVL 103
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
+ L ++ E +A++++ ++ +S SGG R R+ +ARAL P +LLD
Sbjct: 104 QIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162
Query: 346 EPTNHLDLRAVL 357
EP +D +V+
Sbjct: 163 EPFAGVDPISVI 174
|
Length = 241 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 3e-07
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 55/180 (30%)
Query: 198 GPNGMGKSTLLKLLA-----------WRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAH 246
GPNG GK++LL++LA W+ P+ + D + +G + I+ ++A
Sbjct: 34 GPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH-QPGIKTELTAL 92
Query: 247 EELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAG 306
E L Y++L G D A +A LA
Sbjct: 93 ENL---------------------------------RFYQRLHGPGDDEALWEA---LAQ 116
Query: 307 LGFTKEMQGR---PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL 363
+G + G P + S G + R++LAR + L +LDEP +D + V LE L
Sbjct: 117 VG----LAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172
|
Length = 204 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 48/245 (19%), Positives = 93/245 (37%), Gaps = 60/245 (24%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ ++N + L S + G+ +GL+GPNG GK+T ++++
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL------------- 47
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAE-- 283
++ D + DG+ A + L E
Sbjct: 48 ----GIILPDSGEVL------------------------FDGKPLDIAARNRIGYLPEER 79
Query: 284 -LYEKLQI------------LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRIS 330
LY K+++ L + A + + L L + E + + S G + ++
Sbjct: 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQ 138
Query: 331 LARALFVQPTLLLLDEPTNHLDLRAVLWLEEY---LCRWKKTLVVVSHDRDFLNTVCTEI 387
A+ P LL+LDEP + LD V L++ L R KT+++ +H + + +C +
Sbjct: 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRV 198
Query: 388 IHLHD 392
+ L+
Sbjct: 199 LLLNK 203
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 30/220 (13%)
Query: 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234
A ++L + S + G+ + GP+G GKSTLLK++A P LL E G+
Sbjct: 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFE----GE 69
Query: 235 DRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSD 294
D S ++ E R++V+ + ++ G+ D+ L QI
Sbjct: 70 DISTLKP-----EIY---RQQVSYCAQTPTLFGDTVYDN----------LIFPWQIRNQQ 111
Query: 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-- 352
A L + + SGG + RISL R L P +LLLDE T+ LD
Sbjct: 112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171
Query: 353 -LRAVLWLEEYLCRWKKTLVV-VSHDRDFLNTVCTEIIHL 390
V + R + V+ V+HD+D +N ++I L
Sbjct: 172 NKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITL 210
|
Length = 225 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVL--WLEEYLCRWKKTLVVVSHDR 377
SGG + R++LARAL V+P +LLLDEP LD +R L WL + K T V V+HD+
Sbjct: 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197
Query: 378 D 378
+
Sbjct: 198 E 198
|
Length = 353 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 36/239 (15%)
Query: 166 ITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKS----TLLKLLAWRKIP 217
++I N SVA E +K S I G+ LVG +G GKS ++L LL
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 218 VPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDA 277
P +L ++++ ++ V ++ +E + SL ++
Sbjct: 67 HPSG-SILFDGEDLLAASERQLRGVRGNKIGMI-FQEPMTSLNPLHTI------------ 112
Query: 278 GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF----SGGWRMRISLAR 333
G++LAE+ + L AA A+A ++L +G + + ++ SGG R R+ +A
Sbjct: 113 GKQLAEVLRLHRGLSRAAARARALELLELVGIPE--PEKRLDAYPHELSGGQRQRVMIAM 170
Query: 334 ALFVQPTLLLLDEPTNHLD--LRAVL--WLEEYLCRWKKTLVVVSHD----RDFLNTVC 384
AL +P LL+ DEPT LD ++A + L+E ++ ++HD R F + V
Sbjct: 171 ALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY 229
|
Length = 534 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 31/209 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG---------------EVRRS 557
+ D + I+ G I+G +G+GKST++ LL + PT G E+R
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 558 QKLRIGRYSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL 614
++ +I Q F + ++ T L +E ++E L + GL ++ H
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEE---RREKALDALRQVGLENYAHS 160
Query: 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDALADALDEFTGGVV 670
P +LSGG + RV P ILL+DE + LD + D L + +V
Sbjct: 161 YP-DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 671 LVSHDSRLISRVCDDEERSEIWVVENGTV 699
+SHD R+ D I +++NG V
Sbjct: 220 FISHDLDEAMRIGD-----RIAIMQNGEV 243
|
Length = 400 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 36/212 (16%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
K L ++ I + L+GP+G GKSTLL+ ++ L+ + GD
Sbjct: 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCF--------NRMNDLIPGCRITGDILY 70
Query: 238 AIQAVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQ------- 289
+ ++ + ++V LR ++ + Q +YE +
Sbjct: 71 NGENIMDSGADVVALRRKIGMVFQRPNPFP---------------KSIYENVAYGPRIHG 115
Query: 290 ILGSDAAEAQASKILAGLGFTKEMQGR---PTKSFSGGWRMRISLARALFVQPTLLLLDE 346
+ K L G E++ R S SGG + R+ +AR L V P ++L+DE
Sbjct: 116 EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDE 175
Query: 347 PTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
P + LD A +E+ + KK T+++V+H+
Sbjct: 176 PCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207
|
Length = 253 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L+L V F+Y + F + +++ I G V ++G NG+GKSTL LL G P GE+
Sbjct: 323 LELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381
Query: 556 ------------RSQKLRIGRYSQH--FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA 601
+KL +S + F LL E L+ + L+ + ++
Sbjct: 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLN- 440
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645
+ + KLS GQK R+ + + IL+LDE
Sbjct: 441 ---------DGRFSNL-KLSTGQKKRLALLLALLEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 501 VSFSYPNREDFK----LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG---- 552
VS+ Y + E+ L DV++ + G + I+G NG+GKST+ + L P+EG
Sbjct: 10 VSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV 69
Query: 553 ------------EVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR 600
++R + V T+ E V++ P+ G+ E +R
Sbjct: 70 DGLDTSDEENLWDIRNKAGMVFQNPDNQIV--ATIVEEDVAF----GPENLGI-PPEEIR 122
Query: 601 AK----LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----M 652
+ L K G+ + P LSGGQK RV I +P ++ DEPT LD
Sbjct: 123 ERVDESLKKVGMYEYRRHAP-HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181
Query: 653 QSIDALADALDEFTGGVVLVSH 674
+ ++ + + ++ ++L++H
Sbjct: 182 EVVNTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKK 368
E+ RP SGG R R+ +ARAL +P++LLLDEP LD+ + L L
Sbjct: 105 ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164
Query: 369 TLVVVSHD 376
+++ +HD
Sbjct: 165 AILMTTHD 172
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 33/206 (16%)
Query: 196 LVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREE 255
L+GP+G GK+TLL+LLA P + ++L ++V V H + + +
Sbjct: 1 LLGPSGCGKTTLLRLLA--GFEQPDSGSIMLDGEDVT---------NVPPHLRHINMVFQ 49
Query: 256 VASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK--EM 313
+L +V+ N A L++ AE ++L L + E
Sbjct: 50 SYALFPHMTVE-------ENVA--------FGLKMRKVPRAEI-KPRVLEALRLVQLEEF 93
Query: 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLE--EYLCRWKKT 369
R SGG + R++LARAL +P +LLLDEP + LD LR + LE + T
Sbjct: 94 ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGIT 153
Query: 370 LVVVSHDRDFLNTVCTEIIHLHDQKL 395
V V+HD++ T+ I + K+
Sbjct: 154 FVFVTHDQEEAMTMSDRIAIMRKGKI 179
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 47/214 (21%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN--IDVLLVEQEVVGDDRSA 238
+ S+ + G+ + ++G +G GKSTL++LL N I+ E V G D +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLL---------NRLIEPTRGEILVDGKDIAK 94
Query: 239 IQAVVSAHEELVKLR--------EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI 290
+ A EL +LR + A L + T ++ G L++
Sbjct: 95 LSA-----AELRELRRKKISMVFQSFALLPHRTVLENVAFG----------------LEV 133
Query: 291 LGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
G AE + A + L +G P SGG + R+ LARAL P +LL+DE
Sbjct: 134 QGVPKAEREERALEALELVGLEGYADKYP-NELSGGMQQRVGLARALANDPDILLMDEAF 192
Query: 349 NHLD--LRAVLW--LEEYLCRWKKTLVVVSHDRD 378
+ LD +R + L E + KKT+V ++HD D
Sbjct: 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226
|
Length = 386 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 24/180 (13%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK 559
VSF+Y R+D L ++++ + VA+VG G+GKSTL +LL G TEGE+R +
Sbjct: 346 VSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR 403
Query: 560 LRIGRYSQHFV---DLLTMEETPV----SYL----LRLHPDQEGLSKQ-EAVR-AKLGKF 606
+ S H V + +++ PV ++L L +E + + E V+ A+L +
Sbjct: 404 -PLSSLS-HSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELAR- 460
Query: 607 GLPSHNHLTPIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 662
LP + TP+ + LS GQK + + + P IL+LDE T ++D + A+ AL
Sbjct: 461 SLPDGLY-TPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519
|
Length = 592 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
+ SGG + R+ +ARA+ V+P +LL+DEP + LD + + LEE + KK T+++V+H+
Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN 221
|
Length = 267 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 5e-07
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 47/187 (25%)
Query: 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------------------------RS 557
G I+GPNG GK+T + +L+G+L P G+ +
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157
Query: 558 QKLRIGRYSQHFVDLLTME-ETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP 616
++++ Q +VDL+ + V LL+ D+ G K + V +LG L
Sbjct: 158 GEIKVVHKPQ-YVDLIPKVFKGKVRELLK-KVDERG--KLDEVVERLG---------LEN 204
Query: 617 -----IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM-QSIDALADALDEFTGG-- 668
I++LSGG+ RV + + DEPT++LD+ Q ++ A + E G
Sbjct: 205 ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV-ARLIRELAEGKY 263
Query: 669 VVLVSHD 675
V++V HD
Sbjct: 264 VLVVEHD 270
|
Length = 590 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 50/219 (22%), Positives = 79/219 (36%), Gaps = 46/219 (21%)
Query: 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244
+ + G +G GK+TL++L+A P I ++ + D R I +
Sbjct: 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI---VLNGRTLFDSRKGIF--LP 71
Query: 245 AHEELVKLREEVASLQNSTSVDG-------EEDGDDANDAGEKLAELYEKLQILGSDAAE 297
+ + + A L SV G + + E++ EL
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL------------ 119
Query: 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL 357
G+G + GR SGG + R+++ RAL P LLL+DEP LD
Sbjct: 120 --------GIG---HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168
Query: 358 WLEEYLCRWKKTL----VVVSHDRDFLNTVCTEIIHLHD 392
+ YL R + VSH E++ L D
Sbjct: 169 EILPYLERLHAEFGIPILYVSHSLQ-------EVLRLAD 200
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 52/211 (24%)
Query: 166 ITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKS-TLLKLLAWRKIPVPK 220
+ I+N SVA R + ++ S++I G+ LVG +G GKS T L +L R +P P
Sbjct: 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPP 63
Query: 221 NIDVLLVEQEVV---GDDRSAIQAVVSAHE-ELVKLR---------EEVASLQNSTSVDG 267
VV GD R ++++ A E L +R E + SL ++
Sbjct: 64 ----------VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTL-- 111
Query: 268 EEDGDDANDAGEKLAELYEKLQI---LGSDAAEAQASKILAGLGF---TKEMQGRPTKSF 321
EK +LYE L + + +AA + L +G K + P +
Sbjct: 112 -----------EK--QLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ-L 157
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SGG R R+ +A AL +P LL+ DEPT LD
Sbjct: 158 SGGERQRVMIAMALLTRPELLIADEPTTALD 188
|
Length = 529 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG- 552
+L +VS Y + L +V + I+ G V ++G NGAGK+TLL L GD T G
Sbjct: 4 VMLSFDKVSAHYGKIQ--ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR 61
Query: 553 ------EVRRSQKLRIGRYSQHFV-------DLLTMEETPVSYLLRLHPDQEGLSKQEAV 599
++ Q +I R + V +T+EE DQ QE +
Sbjct: 62 IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQ----FQERI 117
Query: 600 RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647
+ F + +SGG++ + MS+P +LLLDEP+
Sbjct: 118 KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
|
Length = 237 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 5e-07
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 27/205 (13%)
Query: 186 VRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245
V + G+ +GL+G NG GK+T K+L D + GD A +++++
Sbjct: 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTG---------DTTVTS----GDATVAGKSILT- 2005
Query: 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILA 305
++ + + + D D G + LY +L+ + ++ E A+ +
Sbjct: 2006 ---------NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQ 2056
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLW-LEEY 362
LG + R ++SGG + ++S A AL P L+LLDEPT +D R +LW
Sbjct: 2057 SLGLSL-YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115
Query: 363 LCRWKKTLVVVSHDRDFLNTVCTEI 387
+ R + +V+ SH + +CT +
Sbjct: 2116 IIREGRAVVLTSHSMEECEALCTRL 2140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 5e-07
Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 486 PEPTELTPPLLQLIEV---SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNL 542
E ++EV S Y + ++D+ + I+ A++GP+G GKST L
Sbjct: 9 IEIAPFPEAKEHILEVKDLSIYYGEKR--AVNDISMDIEKHAVTALIGPSGCGKSTFLRS 66
Query: 543 L--AGDLSP---TEGEVRR-------------SQKLRIGRYSQHFVDLLTMEETPVSYLL 584
+ DL P +EGE+ + + IG Q +++ L
Sbjct: 67 INRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHAL 126
Query: 585 RLHPDQEGLSKQEAVRAKLGKFGL----PSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640
+ ++ E V L K L H + ++ LSGGQ+ R+ KP +
Sbjct: 127 KYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALS-LSGGQQQRLCIARTLAMKPAV 185
Query: 641 LLLDEPTNHLDMQS---IDALADALDEFTGGVVLVSHDSRLISRVCD 684
LLLDEP + LD S I+ L L E +++V+H+ + RV D
Sbjct: 186 LLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSD 231
|
Length = 268 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 197 VGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEV 256
+GP+G GKST+L+ L +P VE EV+ D V V +R +
Sbjct: 36 IGPSGCGKSTVLRTLNRMHEVIPGA----RVEGEVLLDGEDLYGPGVDP----VAVRRTI 87
Query: 257 ASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGR 316
+ + D AG KL + K D E K L G E++ R
Sbjct: 88 GMVFQRPNPFPTMSIRDNVVAGLKLNGVRNK-----KDLDEL-VEKSLRGANLWNEVKDR 141
Query: 317 ---PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLV 371
P SGG + R+ +ARA+ V+P +LL+DEP + LD + L +E+ + K+ T+V
Sbjct: 142 LDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIV 201
Query: 372 VVSHD 376
+V+H+
Sbjct: 202 IVTHN 206
|
Length = 258 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 26/218 (11%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ + + SV K+ L S S+ + L+GP+G GKSTLL+ + ++ L
Sbjct: 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSI--------NRMNDL 57
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASL---QNSTSVDGEEDGDDANDAGEKLA 282
E + G + S + V LR+E+ + N + E+ G +L
Sbjct: 58 NPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYEN----VVYGLRLK 113
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS---FSGGWRMRISLARALFVQP 339
+ +K Q+L D A K L G E++ R S SGG + R+ +AR L P
Sbjct: 114 GIKDK-QVL--DEA---VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSP 167
Query: 340 TLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
++LLDEPT+ LD + +EE L K T+++V+
Sbjct: 168 KIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 60/197 (30%), Positives = 88/197 (44%), Gaps = 27/197 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSPT---EGEVRRSQK-------- 559
L+D+++ I A++GP+G GKST L L DL EGEV K
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 560 -----LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL--PSHN 612
R+G Q V+Y R+H ++ + V L K L +
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD 139
Query: 613 HLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI----DALADALDEFTG 667
L A KLSGGQ+ R+ KP ++L+DEPT+ LD S D + + E+T
Sbjct: 140 DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYT- 198
Query: 668 GVVLVSHDSRLISRVCD 684
+V+V+H+ + SRV D
Sbjct: 199 -IVIVTHNMQQASRVSD 214
|
Length = 251 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 7e-07
Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 43/189 (22%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L +I++ Y E K V + + G ++I+G +G+GKST L + P+EG +
Sbjct: 6 LNVIDLHKRYGEHEVLK--GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV 63
Query: 556 ------------------------RSQKLRIGRYSQHF------VDLLTMEETPVSYLLR 585
R + R+ QHF L + E P+ L
Sbjct: 64 VNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-- 121
Query: 586 LHPDQEGLSKQEA-VRAK--LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642
GLSKQEA RA L K G+ LSGGQ+ RV +P +LL
Sbjct: 122 ------GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL 175
Query: 643 LDEPTNHLD 651
DEPT+ LD
Sbjct: 176 FDEPTSALD 184
|
Length = 257 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHDR 377
SGG + R++LARAL P LLLLDEP + LD R L + + ++ T ++V+HD+
Sbjct: 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195
Query: 378 D 378
+
Sbjct: 196 E 196
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 7e-07
Identities = 54/194 (27%), Positives = 76/194 (39%), Gaps = 33/194 (17%)
Query: 528 IVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLH 587
+VG NG GKSTL L+G L P +G V K YS+ LL + + +
Sbjct: 32 LVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL--DYSKR--GLLALRQQVATVFQ--D 85
Query: 588 PDQE-----------------GLSKQEAVRAKLGKFGLPSHNHL--TPIAKLSGGQKARV 628
P+Q+ G+ + E R L H PI LS GQK RV
Sbjct: 86 PEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRV 145
Query: 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSHDSRLISRVCDD 685
+ + LLLDEPT LD + + V++ SHD LI + D
Sbjct: 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISD- 204
Query: 686 EERSEIWVVENGTV 699
++V+ G +
Sbjct: 205 ----AVYVLRQGQI 214
|
Length = 271 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 18/221 (8%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+++++ V LK S+ I L+GP+G GKST L+ L + I
Sbjct: 46 LSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLN----RMNDRIKAA 101
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
++ V D + Q V+ LV+LR+ V + S + + ++ + K ++
Sbjct: 102 RIDGSVELDGQDIYQDGVN----LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDIN 157
Query: 286 EKL--QILGSDAAEAQ---ASKILAGLGFTKEMQGRPTKS---FSGGWRMRISLARALFV 337
L ++LG D +A+ + L E+ R + SGG + R+ +AR L V
Sbjct: 158 TGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV 217
Query: 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
P ++L+DEP + LD A +E+ + + T+VVV+H+
Sbjct: 218 DPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN 258
|
Length = 305 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 7e-07
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 48/203 (23%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEET---- 578
G +AIVG +G+GKS L L G V+ K+ + R S+ ++L
Sbjct: 42 GETLAIVGESGSGKSVTALALMRLLEQAGGLVQ-CDKMLLRRRSRQVIELSEQSAAQMRH 100
Query: 579 ------------PVSYL-------------LRLHPDQEGLSKQEAVR-AK--LGKFGLP- 609
P++ L +RLH +G S++EA+ AK L + +P
Sbjct: 101 VRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH---QGASREEAMVEAKRMLDQVRIPE 157
Query: 610 SHNHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLD-------MQSIDALADA 661
+ L+ +LSGG + RV+ +P +L+ DEPT LD +Q I L
Sbjct: 158 AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ-- 215
Query: 662 LDEFTGGVVLVSHDSRLISRVCD 684
E + GV+ ++HD +++ + D
Sbjct: 216 -KEMSMGVIFITHDMGVVAEIAD 237
|
Length = 623 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLD---LRAVL-WLEEYLCRWKKTLVVVSHD 376
SGG + R++ AR L +P + LDE T+ LD + L+E T++ V H
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI----TVISVGH- 146
Query: 377 RDFLNTVCTEIIHLHDQKLHF 397
R + HD+ L
Sbjct: 147 R-------PSLWKFHDRVLDL 160
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 8e-07
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 287 KLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDE 346
KL+ + D + + ++ L + +P K SGG R R++L RA+ +P + L+DE
Sbjct: 98 KLRKVPKDEIDERVREVAELLQIEHLLDRKP-KQLSGGQRQRVALGRAIVREPKVFLMDE 156
Query: 347 PTNHLD--LRAVLWLE--EYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
P ++LD LR + E R T + V+HD+ T+ I ++D ++
Sbjct: 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-07
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
SGG + R+ +ARA+ ++P +LLLDEPT+ LD + L +EE + K T+V+V+H
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 33/219 (15%)
Query: 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLK-------LLAWRKIPVPK 220
I+N + + LKS ++ I + L+GP+G GKSTLL+ L+ KI
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65
Query: 221 NIDVLLVEQEV-VGDDRSAIQAVVSAHEEL-VKLREEVASLQNSTSVDGEEDGDDANDAG 278
+D + + V D R + V + + E VA + + ++ D+ +
Sbjct: 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS 125
Query: 279 EKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338
+ A L++++ K+ SGG + R+ +AR + ++
Sbjct: 126 LRGAALWDEV----------------------KDRLKSHAFGLSGGQQQRLCIARTIAME 163
Query: 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
P ++L+DEPT+ LD A +EE + KK T+V+V+H
Sbjct: 164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
S SGG + R+ +ARA+ VQP ++L+DEP + LD + L +EE + K+ T+++V+H+
Sbjct: 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
|
Length = 264 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 43/193 (22%)
Query: 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHE 247
IS + G++GPNG+GK+T +K+LA P +I++ L
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT------------------- 62
Query: 248 ELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL 307
V + + +V L + + ++I L
Sbjct: 63 --VSYKPQYIKADYEGTVR---------------DLLSSITKDFYTHPY--FKTEIAKPL 103
Query: 308 GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD----LRAVLWLEEYL 363
+ + R SGG R+++A L + LLDEP+ +LD L A + +
Sbjct: 104 QIEQILD-REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
Query: 364 CRWKKTLVVVSHD 376
+KT VV HD
Sbjct: 163 ENNEKTAFVVEHD 175
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 58/227 (25%)
Query: 178 KELLKSTSVR---------ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVE 228
+E+LK T + G+ + ++G +G GKSTLL+ + P +
Sbjct: 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV------ 81
Query: 229 QEVVGDDRSAIQAVVSAHEELVKLREEVAS--------LQNSTSVDGEEDGDDANDAGEK 280
+ G D +A+ + +EL +LR + S L + T ++ G
Sbjct: 82 -LIDGQDIAAM-----SRKELRELRRKKISMVFQSFALLPHRTVLENVAFG--------- 126
Query: 281 LAELYEKLQILGSDAAE--AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338
L++ G AE +A++ L +G P SGG + R+ LARAL V
Sbjct: 127 -------LEVQGVPRAEREERAAEALELVGLEGWEHKYP-DELSGGMQQRVGLARALAVD 178
Query: 339 PTLLLLDEPTNHLD--LRA-----VLWLEEYLCRWKKTLVVVSHDRD 378
P +LL+DE + LD +R +L L+ L +KT+V ++HD D
Sbjct: 179 PDILLMDEAFSALDPLIRREMQDELLRLQAEL---QKTIVFITHDLD 222
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 45/209 (21%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG-----DLSPTEGEVRRSQK---- 559
++ L DV + I A++GP+G GKST L + D + EGE+ K
Sbjct: 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110
Query: 560 ---------LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQ-----------EAV 599
RIG Q V+Y L++ + ++ + V
Sbjct: 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV 170
Query: 600 RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSID 656
+ +L GL LSGGQ+ R+ P ++L+DEP + LD I+
Sbjct: 171 KDQLDSSGL----------DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIE 220
Query: 657 ALADAL-DEFTGGVVLVSHDSRLISRVCD 684
L + L +E+T VV+V+H+ + +R+ D
Sbjct: 221 DLIEELAEEYT--VVIVTHNMQQAARISD 247
|
Length = 285 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTL----VV 372
P + SGG R+ LARAL +P LL+LDEPT +D+ + L + + + ++ L ++
Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM 176
Query: 373 VSHD 376
VSHD
Sbjct: 177 VSHD 180
|
Length = 251 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRA-VLWLEEYLCRWKK-TLVVVSH 375
SGG R R++LAR L + +LLLDEP + LD LR +L L +C+ ++ TL++VSH
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188
|
Length = 232 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
KE + + + SGG + +++ARAL +P LLLLDEP+
Sbjct: 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-------------RRSQ----------- 558
G V I+GPNG GKST L +LAG+L P G R ++
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159
Query: 559 KLRIGRYSQHFVDLLTME-ETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPI 617
+LR Q +VDL+ + V LL+ D+ G K + V +LG + + +
Sbjct: 160 ELRAVHKPQ-YVDLIPKVVKGKVGELLKKV-DERG--KFDEVVERLGLENVLDRD----V 211
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSH 674
++LSGG+ RV + + + DEP+++LD++ A + E V++V H
Sbjct: 212 SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
Query: 675 D 675
D
Sbjct: 272 D 272
|
Length = 591 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 60/199 (30%), Positives = 88/199 (44%), Gaps = 31/199 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSP---TEGEV------------- 554
L V++ I T A++GP+G+GKSTLL + +L P GEV
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 555 ---RRSQKLRIGRYSQHFVDLLTMEETPVSYLL-RLHPDQEGLSKQEAVRAKLGKFGL-- 608
RR Q + + +L E + L RL ++ L QE VR L K L
Sbjct: 79 ELRRRVQM--VFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL--QERVRWALEKAQLWD 134
Query: 609 PSHNHL-TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG 667
+ L P KLSGGQ+ R+ +P +LL DEPT +LD ++ + E
Sbjct: 135 EVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK 194
Query: 668 --GVVLVSHDSRLISRVCD 684
+VLV+H + +R+ D
Sbjct: 195 DMTIVLVTHFPQQAARISD 213
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 22/193 (11%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSPTEGEVR------RSQKLRIG 563
L D+++ I+ A++G +G GKST L N + ++ +G V ++Q +
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 564 R------YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV----RAKLGKFGLPSHNH 613
R + Q V + ++ E +SY +LH + ++EA+ K+G F
Sbjct: 78 RKNVGMVFQQPNVFVKSIYEN-ISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL 136
Query: 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG--GVVL 671
LSGGQ+ R+ KP +LLLDEPT+ LD S + + L E + +++
Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIM 196
Query: 672 VSHDSRLISRVCD 684
V+H+ + RV D
Sbjct: 197 VTHNMQQGKRVAD 209
|
Length = 246 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 21/227 (9%)
Query: 155 GQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214
G D DA + N ++ GK +L S+ L+GP G GK+T L+ L
Sbjct: 11 GAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70
Query: 215 KIPVPK---NIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDG 271
V + DVLL + + + ++++ R V L +
Sbjct: 71 NDKVSGYRYSGDVLLGGRSIFN------------YRDVLEFRRRVGMLFQRPNPFPMSIM 118
Query: 272 DDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331
D+ AG + +L + + G A+A+ +++ + P + SGG + + L
Sbjct: 119 DNVL-AGVRAHKLVPRKEFRG--VAQARLTEVGLWDAVKDRLSDSPFR-LSGGQQQLLCL 174
Query: 332 ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHD 376
AR L V P +LLLDEPT+ LD +EE++ + T+++V+H+
Sbjct: 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221
|
Length = 276 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 42/230 (18%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP--- 219
+ I ++N + +LK+ ++ I L+GP+G GKST ++ L +P
Sbjct: 1 MYRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 220 KNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA-----------SLQNSTSVDGE 268
+ L ++ ++V+LR++V S+ ++ +
Sbjct: 61 HEGHIYLDGVDIYDPAV-----------DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLR 109
Query: 269 EDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMR 328
G+D D E+ E K L D + + K GL SGG + R
Sbjct: 110 IHGEDDEDFIEERVEESLKAAALW-DEVKDKLDKSALGL--------------SGGQQQR 154
Query: 329 ISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
+ +AR + V P ++L+DEP + LD + +E+ + + K+ T+V+V+H+
Sbjct: 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 30/204 (14%)
Query: 495 LLQLIEVSFSYPNREDF-KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
+L++ + F Y D +L+ V I G V+I+G NG+GKST L+ G EG+
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 554 V---------------RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598
V RR + FV ++ + +G+ ++E
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM------ENQGIPREEM 117
Query: 599 VR---AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---- 651
++ L + P A+LSGGQK RV I +P I++LDE T+ LD
Sbjct: 118 IKRVDEALLAVNMLDFKTREP-ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 652 MQSIDALADALDEFTGGVVLVSHD 675
+ + + + +++ V+ ++HD
Sbjct: 177 QEIMRVIHEIKEKYQLTVLSITHD 200
|
Length = 277 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L ++++ I G VA+VG +GAGK+TLL ++ G E R ++ L
Sbjct: 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSAL 458
Query: 573 LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP-----------SHNHLTPIAKLS 621
+ E P+ ++ E +R+K G + + ++LS
Sbjct: 459 IPGE---------YEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELS 509
Query: 622 GGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALD----EFTGGVVLVSHDSR 677
GQK R + +P++LL+DE HLD + +A + E +++V+H
Sbjct: 510 TGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE 569
Query: 678 LI 679
+
Sbjct: 570 VG 571
|
Length = 593 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 299 QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL----R 354
A +L LG K + P + SGG + R++LARA +P +L DEPT +LD +
Sbjct: 126 GAKALLEQLGLGKRLDHLPAQ-LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDK 184
Query: 355 AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
L TL++V+HD L C + L + +L
Sbjct: 185 IADLLFSLNREHGTTLILVTHD-LQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 3e-06
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 33/218 (15%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
P +++ ++SF Y + + + + I AI+GP+G GKST + L +S EG
Sbjct: 6 PAIKVKDLSFYYNTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTL-NRISELEGP 62
Query: 554 VR------------RSQKLRIGRYSQHFVDLLTMEETP--------VSYLLRLHPDQEGL 593
V+ ++ I R + + ++ P V+Y +R+
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQ-IGMVFQRPNPFPMSIYENVAYGVRISAKLPQA 121
Query: 594 SKQEAVRAKLGKFGL--PSHNHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHL 650
E V + L L + L A LSGGQ+ R+ KP +LL+DEP + L
Sbjct: 122 DLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181
Query: 651 D----MQSIDALADALDEFTGGVVLVSHDSRLISRVCD 684
D M+ + + E T + +V+H+ + +RV D
Sbjct: 182 DPIATMKVEELIHSLRSELT--IAIVTHNMQQATRVSD 217
|
Length = 259 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-06
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLR 561
+F++ L+ + I G VA+VG G GKS+LL+ L ++ EG V K
Sbjct: 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV--HMKGS 700
Query: 562 IGRYSQH-FVDLLTMEETPVSYLLRLHPDQEGLSKQ--EAVRAKLGKFGLPSHNHLTPIA 618
+ Q ++ ++ E +L E +Q EA LPS + T I
Sbjct: 701 VAYVPQQAWIQNDSLREN----ILFGKALNEKYYQQVLEACALLPDLEILPSGDR-TEIG 755
Query: 619 K----LSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
+ LSGGQK RV S I L D+P + +D
Sbjct: 756 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 478 DYSVEFHFPEPTELTPPL--------------LQLIEVSFSYPN---REDFKLSDVDVGI 520
D+ F+ PEP ++L +V + E F L +D+ I
Sbjct: 306 DFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRI 365
Query: 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
G V IVG NG GKSTL L G P EGE+
Sbjct: 366 AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 30/156 (19%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTE---GEVRRSQ----KLRIGRY 565
D+++ I G V VGP+G GKSTLL ++AG D++ + GE R + + +G
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV 80
Query: 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVR-----AKLGKFGLPSHNHL---T 615
Q + L++ E +S+ L+L G K+E + A++ + HL
Sbjct: 81 FQSYALYPHLSVAEN-MSFGLKL----AGAKKEEINQRVNQVAEVLQLA-----HLLDRK 130
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
P A LSGGQ+ RV +++P + LLDEP ++LD
Sbjct: 131 PKA-LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
+++ +V+ G +L+ S + G+ +VGPNG GKSTLLK +
Sbjct: 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL 46
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
+ I + V+ GKE+LK ++ I G+ + L+GPNG GKSTL K +
Sbjct: 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM 47
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 46/213 (21%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI--DVLLVEQEVVGDD 235
+L S+ + G+ ++G +G GK+TLL ++ ++ +L Q D
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAIS-GRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 236 RSAIQAVVSAHEELVK---LREEVA-----SLQNSTSVDGEEDGDDANDAGEKLAELYEK 287
A V + L+ +RE + L +S + +K E
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSS----------DAIRKKRVE---- 124
Query: 288 LQILGSDAAEAQ-ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDE 346
+L D A + ++ G+ SGG R R+S+A L P +L+LDE
Sbjct: 125 -DVLLRDLALTRIGGNLVKGI--------------SGGERRRVSIAVQLLWDPKVLILDE 169
Query: 347 PTNHLD----LRAVLWLEEYLCRWKKTLVVVSH 375
PT+ LD L V L + R + +++ H
Sbjct: 170 PTSGLDSFTALNLVSTLSQL-ARRNRIVILTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 4e-06
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 33/219 (15%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
P +++ +SF Y ++ L V + I AI+GP+G GKST L L ++ E E
Sbjct: 6 PAIKVNNLSFYYDTQK--ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNELESE 62
Query: 554 VR------------RSQKLRIGRYSQHFV------DLLTME-ETPVSYLLRL---HPDQE 591
VR +++ + R + +L M V+Y +++ P E
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
E+ + H LSGGQ+ R+ KP +LL+DEP LD
Sbjct: 123 IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
Query: 652 ---MQSIDALADAL---DEFTGGVVLVSHDSRLISRVCD 684
+++L +L E T +V+VSH+ +SR+ D
Sbjct: 183 PIASMKVESLIQSLRLRSELT--MVIVSHNLHQVSRLSD 219
|
Length = 261 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK-----TLVVVSH 375
SGG + RI++ARA+ ++P +LLLDEP + LD + E + + T++ V+H
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197
Query: 376 DRDFLNTVCTEIIHLHDQKL 395
D+D T+ + + D +L
Sbjct: 198 DQDDALTLADKAGIMKDGRL 217
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 35/212 (16%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI---DVLLVEQ---E 230
GK+ + + I+ G+ + ++G +G GKST +++L P I +++Q E
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 231 VVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI 290
+ R I V L + LQN TS+ E G + EK EL +
Sbjct: 65 LREVRRKKIGMVFQQ----FALFPHMTILQN-TSLGPELLGWPEQERKEKALELLK---- 115
Query: 291 LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNH 350
L GL +E + R SGG + R+ LARAL +P +LL+DE +
Sbjct: 116 -------------LVGL---EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159
Query: 351 LDLRAVLWLEEYLCRWK----KTLVVVSHDRD 378
LD +++ L + + KT+V ++HD D
Sbjct: 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 59/226 (26%)
Query: 151 SVLEGQDDADA----NVK------DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPN 200
SV + ++ ADA NVK IT + F+ +++G + S G+ +VGP
Sbjct: 315 SVFQREEPADAPELPNVKGAVEFRHITFE-FANSSQG---VFDVSFEAKAGQTVAIVGPT 370
Query: 201 GMGKSTLLKLLAWRKIPVPKN-------IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR 253
G GK+TL+ LL +++ P ID+ V +E + R +I V
Sbjct: 371 GAGKTTLINLL--QRVYDPTVGQILIDGIDINTVTRESL---RKSIATVF---------- 415
Query: 254 EEVASLQNSTSVD----GEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASK--ILAGL 307
+ A L N + + G E D E+YE AA+A A+ IL
Sbjct: 416 -QDAGLFNRSIRENIRLGREGATDE--------EVYE--------AAKAAAAHDFILKRS 458
Query: 308 GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
+ G SGG R R+++ARA+ +L+LDE T+ LD+
Sbjct: 459 NGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDV 504
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL 543
V+F+YP +E L +++ I G VA+VG +G+GKST+ NLL
Sbjct: 346 NVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLL 389
|
Length = 582 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 68/278 (24%), Positives = 110/278 (39%), Gaps = 53/278 (19%)
Query: 149 RTSVLEGQDDADANVK---------DITIDNFSVAARGK-ELLKSTSVRISHGKRYGLVG 198
R S ++ +D+ +K +I NF +R + K + K +VG
Sbjct: 1142 RKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVG 1201
Query: 199 PNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD-------DRSAIQAVVSAHEELVK 251
G GKST++ LL + KN ++ + E D Q V +
Sbjct: 1202 ETGSGKSTVMSLLM--RFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259
Query: 252 LREEVASLQNSTSV--DGEEDGDDANDAGEKLAEL------------------YEKLQIL 291
L +E S ++ST G+ D + L +L YE ++
Sbjct: 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG 1319
Query: 292 GSDAAE---AQASKILAGLGFTKEMQ-------GRPTKSFSGGWRMRISLARALFVQPTL 341
DA +A K A F + + G KS SGG + RI++ARAL +P +
Sbjct: 1320 KEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKI 1379
Query: 342 LLLDEPTNHLDLRAVLWLEEYLCRWK----KTLVVVSH 375
LLLDE T+ LD + +E+ + K KT++ ++H
Sbjct: 1380 LLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
|
Length = 1466 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 4e-06
Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 18/213 (8%)
Query: 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK--IPVPKNIDVL 225
+ + S+ K + S+ I L+GP+G GKST L+ + IP ++ +
Sbjct: 24 VKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
L E + D VV+ E+ + ++ S N+ L
Sbjct: 84 LYEGLNILDSNIN---VVNLRREIGMVFQKPNPFPKSIY----------NNITHALKYAG 130
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
E+ + + + E +K A K+ S SGG + R+ +AR L ++P +LLLD
Sbjct: 131 ERRKSVLDEIVEESLTKA-ALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189
Query: 346 EPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
EP + LD + +EE + K+ ++++V+H+
Sbjct: 190 EPASALDPISNAKIEELITELKEEYSIIIVTHN 222
|
Length = 268 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 4e-06
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 24/232 (10%)
Query: 488 PTELTPPLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546
P + P + + FS+ ++ LSD+++ I +G+ VAIVG G GK++L++ + G+
Sbjct: 607 PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE 666
Query: 547 LSPTEGE--VRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS-KQEAVRAKL 603
LS E V R + + S F T+ E + + ++ + A++ L
Sbjct: 667 LSHAETSSVVIRGSVAYVPQVSWIFN--ATVREN-ILFGSDFESERYWRAIDVTALQHDL 723
Query: 604 GKFGLPSHNHLTPIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA 659
P + LT I + +SGGQK RV S I + D+P + LD +
Sbjct: 724 DLL--PGRD-LTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
Query: 660 DAL--DEFTGGV-VLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
D+ DE G VLV++ + + I +V G + GTF E
Sbjct: 781 DSCMKDELKGKTRVLVTNQLHFLPLM------DRIILVSEGMIKE-EGTFAE 825
|
Length = 1495 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 4e-06
Identities = 63/281 (22%), Positives = 112/281 (39%), Gaps = 45/281 (16%)
Query: 158 DADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK-- 215
D + ++ + G + LK+ ++ + + L+GP+G GKST L+
Sbjct: 9 DVSPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL 68
Query: 216 ----------IPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVK-LREEVASLQNSTS 264
I P N+++L E + + + R I V K + E VA
Sbjct: 69 YPGNHYEGEIILHPDNVNILSPEVDPI-EVRMRISMVFQKPNPFPKSIFENVAYGLRIRG 127
Query: 265 VDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324
V ++ + + A L++++ K+ G + SGG
Sbjct: 128 VKRRSILEERVENALRNAALWDEV----------------------KDRLGDLAFNLSGG 165
Query: 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC--RWKKTLVVVSHDRDFLNT 382
+ R+ +ARAL P +LL DEPT+ LD A +EE + + K T+++V+H+
Sbjct: 166 QQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQ---- 221
Query: 383 VCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIY 423
+ + D + Y G +F + K NK+ E Y
Sbjct: 222 ---QAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQTEDY 259
|
Length = 265 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 34/180 (18%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEG------------------------EVRRSQ 558
G + +VGPNG GKST L +LAG L P G
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 559 KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA 618
+++ Q +VDL+ L D+ G K + + +L + N I
Sbjct: 86 DVKVIVKPQ-YVDLIPKAVKGKVGELLKKKDERG--KLDELVDQLELRHVLDRN----ID 138
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM-QSIDA--LADALDEFTGGVVLVSHD 675
+LSGG+ RV + DEP+++LD+ Q ++A L L E V++V HD
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
KEM GR SGG + ++++ARAL +P LLLLDEPT
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 527 AIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLL-- 584
AI G +GAGK++L+N ++G P +G + + ++ L E+ + Y+
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIC---LPPEKRRIGYVFQD 84
Query: 585 -RLHPD-------QEGLSKQEAVRAKLGKF----GLPSHNHLT---PIAKLSGGQKARVV 629
RL P + G++K +F L L P + LSGG+K RV
Sbjct: 85 ARLFPHYKVRGNLRYGMAKSMV-----AQFDKIVALLGIEPLLDRYPGS-LSGGEKQRVA 138
Query: 630 FTSISMSKPHILLLDEPTNHLDM 652
++ P +LL+DEP LD+
Sbjct: 139 IGRALLTAPELLLMDEPLASLDL 161
|
Length = 352 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 15/88 (17%)
Query: 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD----- 352
A + LA +G P + SGG + R++LARAL +P LLLLDEP LD
Sbjct: 112 DAALQALAAVGLADRANEWPA-ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170
Query: 353 ----LRAVLWLEEYLCRWKKTLVVVSHD 376
L LW + T+++V+HD
Sbjct: 171 EMQDLIESLWQQHGF-----TVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 5e-06
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 26/200 (13%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSPT---EGEVRRSQK---- 559
E L +V + I + A++GP+G GKST + L DL EG+V +
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 560 ---------LRIGRYSQHFVDLLTMEETPVSYLLRLH----PDQEGLSKQEAVRAKLGKF 606
+G Q V+Y R+H D +G+ + A L +
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAAL--W 141
Query: 607 GLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT 666
S +P LSGGQ+ R+ KP I+L DEPT+ LD S + D +
Sbjct: 142 DETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK 201
Query: 667 GG--VVLVSHDSRLISRVCD 684
+V+V+H+ + +R+ D
Sbjct: 202 KDYTIVIVTHNMQQAARISD 221
|
Length = 258 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 287 KLQILGSDAAEAQASKILAGLGF-TKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
KL + +A ++LA +G E R SGG + R+ +ARAL P LLL+D
Sbjct: 101 KLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
Query: 346 EPTNHLDLRAVLWLEEYLCRWK----KTLVVVSHDRD 378
EP LD L+E R + KT+V V+HD D
Sbjct: 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 501 VSFSYPNRED--FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
V+F Y R D L DV + I+ G VAIVGP+G+GKSTLL LL G +P G V
Sbjct: 457 VTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 5e-06
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL--CRWKKTLVVVSHDRD 378
SGG + R+ +AR L V+P +LLLDEPT+ LD +A +E+ + R T+++V+H+
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242
Query: 379 FLNTVCTEIIHLHDQKLHFYRG 400
+ V D + FY G
Sbjct: 243 QASRV-------SDYTMFFYEG 257
|
Length = 286 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 36/173 (20%), Positives = 54/173 (31%), Gaps = 49/173 (28%)
Query: 517 DVGIDMGTRVAIVGPNGAGKSTLLN---LLAGDLSPTEGEVRRSQKLRIGRYSQ--HFVD 571
DV G+ I GPNG+GKST+L+ L G R + V
Sbjct: 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALG---------GAQSATRRRSGVKAGCIVA 65
Query: 572 LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFT 631
++ E + LS E + L L+
Sbjct: 66 AVSAE-----LIFTRL----QLSGGEKELSAL-------------ALILALASLKPRPL- 102
Query: 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSHDSRLISR 681
+LDE LD + ALA+A+ E V++++H L
Sbjct: 103 ---------YILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL 146
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 23/59 (38%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
S SGG + R+ +AR + ++P ++L+DEP + LD + L +EE + KK T+V+V+H+
Sbjct: 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
|
Length = 269 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 307 LGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
L F +++G SGG R R+S+A L P+LL LDEPT+ LD
Sbjct: 103 LMFAAKLRG-----LSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 166 ITIDNFSVAA-RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA--WR----KIPV 218
I ++N S+A G+ LLK S I G R + GP+G GKS+L + LA W +I +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 219 PKNIDVLLVEQ 229
P+ D+L + Q
Sbjct: 61 PEGEDLLFLPQ 71
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 465 EDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGT 524
E LPE + S P P + L SY +R L ++ ++ G
Sbjct: 238 EGVQLPEP----DEPSARHALPANE----PRIVLNNGVVSYNDRP--ILHNLSWQVNPGE 287
Query: 525 RVAIVGPNGAGKSTLLNLLAGD 546
IVGPNGAGKSTLL+L+ GD
Sbjct: 288 HWQIVGPNGAGKSTLLSLITGD 309
|
Length = 490 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 39/172 (22%)
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN----IDVLLVEQEVVGDDRSAIQAVVSAH 246
G+ +VGP G GKSTL+ LL +++ P++ ID + R I AVV
Sbjct: 361 GQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRTVTRASLRRNI-AVV--- 414
Query: 247 EELVKLREEVASLQNSTSVD----GEEDGDDANDAGEKLAELYEKLQILGSDAAE-AQAS 301
++ A L N + D G D D E+ AAE AQA
Sbjct: 415 -----FQD--AGLFNRSIEDNIRVGRPDATDE--------EMRA--------AAERAQAH 451
Query: 302 K-ILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
I + G + SGG R R+++ARAL P +L+LDE T+ LD
Sbjct: 452 DFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503
|
Length = 588 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 300 ASKILAGLGFTKEMQGRPTKSF----SGGWRMRISLARALFVQPTLLLLDEPTNHLD--- 352
A +++ LG TK SF SGG R R+S+A + + P+LL+LDEPT+ LD
Sbjct: 182 AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241
Query: 353 -LRAVLWLEEYLCRWKKTLVVVSH 375
R VL L L + KT+V H
Sbjct: 242 AYRLVLTLGS-LAQKGKTIVTSMH 264
|
Length = 659 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-LRAVLWLEEYLCRW--KKTLVVVSHD 376
+ SGG R RISLARA++ L LLD P HLD + E LC+ KT ++V+
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSK 607
Query: 377 RDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+ L +I+ LH+ +FY G F + ++
Sbjct: 608 LEHLKKA-DKILLLHEGVCYFY-GTFSELQA 636
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 49/164 (29%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQH---- 568
L V + + G ++G NG GK+TLL L G L G +R + I + H
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE-DITKLPPHERAR 74
Query: 569 ----FV-------DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPI 617
+V LT+EE L GL A + + L P+
Sbjct: 75 AGIAYVPQGREIFPRLTVEEN-----LLT-----GL----AALPRRSRKIPDEIYELFPV 120
Query: 618 AK---------LSGGQK-----ARVVFTSISMSKPHILLLDEPT 647
K LSGGQ+ AR + +++P +LLLDEPT
Sbjct: 121 LKEMLGRRGGDLSGGQQQQLAIARAL-----VTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 6e-06
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVL-WLEEYLCRWKKTLVVVSH 375
S SGG + R+++ RAL P LLL+DEP LDL R +L +LE ++ VSH
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSH 187
Query: 376 DRDFLNTVCTEIIHLHDQ 393
D EI+ L D+
Sbjct: 188 SLD-------EILRLADR 198
|
Length = 352 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 52/183 (28%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT---EGEVRRS--QKLRIGRYSQ 567
L D + G V ++G G+G STLL LA EG++ +
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82
Query: 568 H----------FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPI 617
LT+ ET + + LR ++ VR
Sbjct: 83 GEIIYVSEEDVHFPTLTVRET-LDFALRCKGNE-------FVR----------------- 117
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD-------MQSIDALADALDEFTGGVV 670
+SGG++ RV +S+ +L D T LD ++ I +AD L
Sbjct: 118 -GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL----KTTT 172
Query: 671 LVS 673
VS
Sbjct: 173 FVS 175
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 6e-06
Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 30/208 (14%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
++LK+ ++ + ++GP+G GKSTLL+ L + + +E V+ D+ +
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALN----RMNDIVSGARLEGAVLLDNEN- 72
Query: 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDD--------ANDAGEKLAELYEKLQI 290
+ S + ++V LR+ V + + + D+ A +L E+ EK
Sbjct: 73 ---IYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLR 129
Query: 291 LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNH 350
+ E + + +GL + SGG + R+ +AR L ++P ++L+DEP +
Sbjct: 130 QAALWDEVKDNLHKSGL------------ALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 351 LDLRAVLWLEEYLCRWKK--TLVVVSHD 376
LD + + +EE + K+ T+ +V+H+
Sbjct: 178 LDPVSTMRIEELMQELKQNYTIAIVTHN 205
|
Length = 251 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 40/180 (22%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
L S G+ G +GPNG GKST +K++ P ++ +V G+D +Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV-------QVCGED--VLQ 68
Query: 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY--EKLQILGS----- 293
+ L E N +D +Y E LQ +
Sbjct: 69 NPKEVQRNIGYLPE-----HNPLYLD-----------------MYVREYLQFIAGIYGMK 106
Query: 294 -DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
+ + +++ +G E Q + S G+R R+ LA+AL P +L+LDEPT LD
Sbjct: 107 GQLLKQRVEEMIELVGLRPE-QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 7e-06
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+L L ++ F+ + F LS + I G NG GKS+LL ++AG + P+ G +
Sbjct: 1 MLSLHQLQFNIEQKNLFDLS---ITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57
Query: 555 --RRSQKLRIGR----YSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGK 605
+ I + Y H + L +T+ E + E + E + A +
Sbjct: 58 YYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFW-------SEIYNSAETLYAAIHY 110
Query: 606 FGLPSHNHLT-PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD--AL 662
F L H+ L LS G + V + + + LLDE +L ++ D L + +
Sbjct: 111 FKL--HDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVM 168
Query: 663 DEFTGGVVLVS 673
+GG+VL+S
Sbjct: 169 KANSGGIVLLS 179
|
Length = 195 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 42/172 (24%), Positives = 62/172 (36%), Gaps = 49/172 (28%)
Query: 196 LVGPNGMGKSTLLKLLA-----------WRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244
+ GPNG GK+TLL++LA W+ P+ + +G + I+ ++
Sbjct: 33 ITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGH-QPGIKTELT 91
Query: 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKIL 304
A E L + N A ++E L +G L
Sbjct: 92 ALENLHFWQR---------------FHGSGNAAT-----IWEALAQVG-----------L 120
Query: 305 AGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAV 356
AGL P S G + R++LAR L +LDEP LD V
Sbjct: 121 AGLEDL------PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
|
Length = 209 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 49/234 (20%)
Query: 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP-- 219
++ + T F K L S+ I+ G ++G NG GKSTLL +A P
Sbjct: 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ 62
Query: 220 -----KNIDVLLVEQE------VVGD--DRSAIQAVVSAHEELVKLREEVASLQNSTSVD 266
++ V + V D +A + + + L + R + L ++
Sbjct: 63 ILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSAL--- 119
Query: 267 GEEDGDDANDAGEKLAELY-EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325
E+ + E+L LG LG + SGG
Sbjct: 120 -----------NERRRSSFRERLARLG--------------LGLENRL-SDRIGLLSGGQ 153
Query: 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWL----EEYLCRWKKTLVVVSH 375
R +SL A P +LLLDE T LD + ++ + + K T ++V+H
Sbjct: 154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 62/210 (29%)
Query: 166 ITIDN----FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221
I + N F R L + S+ I G+ +G++G +G GKSTL++
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRC----------- 50
Query: 222 IDVLLVEQ----EVV--GDDRSAIQAVVSAHEELVKLREEVA------SLQNSTSVDG-- 267
+ L+E+ V+ G D +A+ +EL K R ++ +L +S +V
Sbjct: 51 --INLLERPTSGRVLVDGQDLTALSE-----KELRKARRQIGMIFQHFNLLSSRTVFDNV 103
Query: 268 ----EEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTKEMQGRPTKSFS 322
E G + ++ EL L+++G SD A+ +++ S
Sbjct: 104 ALPLELAGTPKAEIKARVTEL---LELVGLSDKADRYPAQL------------------S 142
Query: 323 GGWRMRISLARALFVQPTLLLLDEPTNHLD 352
GG + R+++ARAL P +LL DE T+ LD
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 8e-06
Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 33/236 (13%)
Query: 498 LIEVSFSYPNREDFK---LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE- 553
L VS++Y + F+ L++ + ++G G+GKST++ L G + G+
Sbjct: 9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT 68
Query: 554 -------------VRRSQKLR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598
++ ++LR IG Q F + +ET + + P G +KQEA
Sbjct: 69 IVGDYAIPANLKKIKEVKRLRKEIGLVFQ-FPEYQLFQET-IEKDIAFGPVNLGENKQEA 126
Query: 599 ---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
V L LP +LSGGQK RV I + L+LDEPT LD +
Sbjct: 127 YKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGE 186
Query: 656 DALADALD----EFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707
+ + + E+ +++V+H+ + R+ D E+ V+ G V FE
Sbjct: 187 EDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD-----EVIVMHEGKVISIGSPFE 237
|
Length = 289 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKS-TLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239
+++ S + G+ +VG +G GKS T L L+ L+EQ G +
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMR-------------LLEQAG-GLVQCDK 77
Query: 240 QAVVSAHEELVKLREEVAS-LQNSTSVD----GEEDGDDAN---DAGEKLAELYEKLQIL 291
+ ++++L E+ A+ +++ D +E N GE++AE Q
Sbjct: 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA 137
Query: 292 GSDAAEAQASKILAGLGF--TKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN 349
+ A +A ++L + + + R SGG R R+ +A AL +P +L+ DEPT
Sbjct: 138 SREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTT 197
Query: 350 HLDL 353
LD+
Sbjct: 198 ALDV 201
|
Length = 623 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
SGG + R+ +AR L ++P ++L+DEPT+ LD + L +EE + KK ++++V+H+
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN 225
|
Length = 271 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 9e-06
Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 50/228 (21%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL----VEQEVVGDDR 236
L +RI+ G +VG NG GKSTL KL + +P+ ++LL V + D R
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC--GLYIPQEGEILLDGAAVSADSRDDYR 415
Query: 237 SAIQAVVSAH---EELVKLRE-EVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG 292
A+ + ++L+ E E ASL N+ LQ L
Sbjct: 416 DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY----------------------LQRLE 453
Query: 293 SDAAEAQASKI-LAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHL 351
A K+ + GF+ T + S G + R++L A +LL DE
Sbjct: 454 I------ADKVKIEDGGFS------TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQ 501
Query: 352 D--LRAVLWLEEY--LCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
D + + E L R KT++++SHD + + +II L +
Sbjct: 502 DPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 9e-06
Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 40/212 (18%)
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR-SAIQAVVSAHEEL 249
G+ GLVGPNG+GKST LK+LA + P D E++ + R S +Q
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ------NYF 79
Query: 250 VKLREE----VASLQN----STSVDGE-EDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
KL E + Q +V G+ + D KL EL ++L++
Sbjct: 80 TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL---------- 129
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL--- 357
+ + R SGG R+++A AL DEP+++LD++ L
Sbjct: 130 ----------RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAA 179
Query: 358 WLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIH 389
L L ++VV HD L+ + ++ IH
Sbjct: 180 RLIRELAEDDNYVLVVEHDLAVLDYL-SDYIH 210
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 31/201 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------RSQKLRIGRYS 566
L +V + G ++ IVG GAGKSTL+ L L EG++ + L R S
Sbjct: 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83
Query: 567 QHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKL--GKFGLPSHNHLTPIAKLSGGQ 624
+ ++ + T S +R + D E + L + GL LS GQ
Sbjct: 84 ---LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGL----------NLSQGQ 130
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL--DEFTGGVVL-VSHDSRLISR 681
+ + + +P +L+LDE T +D + DAL +EFT +L ++H R I
Sbjct: 131 RQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTIREEFTNSTILTIAHRLRTIID 189
Query: 682 VCDDEERSEIWVVENGTVSRF 702
D +I V++ G V +
Sbjct: 190 -YD-----KILVMDAGEVKEY 204
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
+ + N S K +L S+ I G+ L+GP+G GKSTLL+ +A
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA 47
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDR 377
FSGG + R + + L ++P L +LDEP + LD+ A+ + E + + K++++++H +
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 378 DFLNTVCTEIIHL 390
L+ + + +H+
Sbjct: 165 RLLDYIKPDRVHV 177
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 48/290 (16%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ I+ + + K+ + + S + G+ +GL+GPNG GK+T +++ + P ++
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMIL--GLLEPTEGEIT 60
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVD-----GEEDGDDANDAGEK 280
+ + ++ I L EE T D E G + +K
Sbjct: 61 WNGGPLSQEIKNRIGY----------LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK 110
Query: 281 LAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
L E+L+I + + K S G + +I A+ +P
Sbjct: 111 LQAWLERLEI--------------------VGKKTKKIKELSKGNQQKIQFISAVIHEPE 150
Query: 341 LLLLDEPTNHLDLRAVLWLEEY---LCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397
LL+LDEP + LD V L++ L T++ SH + + +C ++ L +
Sbjct: 151 LLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVL 210
Query: 398 YRGNFDDFESGYEQRRKEMNKKFEIYE-------KQVKAAKRSGNRVQQE 440
Y G +D + ++R + + E ++ K R+Q E
Sbjct: 211 Y-GTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGSWRIQIE 259
|
Length = 300 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLE--EYLCRWKKTLVVVSHDR 377
SGG + R+ +ARAL P +LL+DEP LD R L E E KT+V V+HD
Sbjct: 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196
Query: 378 DFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRV 437
D E + L D+ G +++ E N + E ++R +
Sbjct: 197 D-------EALKLADRIAVMDAGEIVQYDTPDEILANPAN---DFVEDFFGESERGLRLL 246
Query: 438 QQEKVKDRAKSAAAKEASKNKAKGKVDED 466
V D + + + +G VD D
Sbjct: 247 SLVSVADAVRRGEPAD-GEPLLEGFVDRD 274
|
Length = 309 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 40/261 (15%)
Query: 161 ANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK 220
N + +D SV+ G + L S + G+ L+GPNG GK+TL+
Sbjct: 1 MNPIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLM------------ 48
Query: 221 NIDVLLVEQEVVGDDRSAIQAV-VSAHEELVKLRE-EVASL------QNSTSVDG---EE 269
DV + G R V +L KL E +A Q T + E
Sbjct: 49 --DV------ITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRE 100
Query: 270 DGDDANDAGEKL-AELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMR 328
+ + A + + + A L+ +L + ++LA +G E + R S G +
Sbjct: 101 NLELALNRDKSVFASLFARL----RAEERRRIDELLATIGLGDE-RDRLAALLSHGQKQW 155
Query: 329 ISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDRDFLNTVCTE 386
+ + L P LLLLDEP + E L +++VV HD F+ + +
Sbjct: 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADK 215
Query: 387 IIHLHDQKLHFYRGNFDDFES 407
+ LH+ + G+ D+ ++
Sbjct: 216 VTVLHEGSV-LAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 48/230 (20%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
+ +L S I GK +VG +G GKST+L+LL +R V + D
Sbjct: 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLL-FR---------FYDVNSGSITIDGQ 325
Query: 238 AIQAVVSAHEELVKLREEVA------SLQNST-----SVDGEEDGDDANDAGEKLAELYE 286
I+ V LR + L N T + + A + A++++
Sbjct: 326 DIRDVTQQS-----LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHD 380
Query: 287 KLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDE 346
+Q L E + + G SGG + R+++AR + P +L+LDE
Sbjct: 381 FIQSL----PEGYDTGV-GERGL----------KLSGGEKQRVAIARTILKNPPILILDE 425
Query: 347 PTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDRDFLNTV--CTEIIHLHD 392
T+ LD ++ L T +V++H L+T+ EII L +
Sbjct: 426 ATSALDTHTEQAIQAALREVSAGRTTLVIAHR---LSTIIDADEIIVLDN 472
|
Length = 497 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 40/181 (22%)
Query: 176 RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVG-- 233
++++ S+ + G+ GL+GPNG GK+T ++ + P + +LL Q++
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV--GLVKPDSGKILLDGQDITKLP 68
Query: 234 -DDRSAIQAVVSAHEELVKLREEVASLQNSTSVDG------EEDGDDANDAGEKLAELYE 286
R A + L +E AS+ +V+ E G + EKL EL E
Sbjct: 69 MHKR--------ARLGIGYLPQE-ASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE 119
Query: 287 KLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDE 346
+ I ++ S SGG R R+ +ARAL P LLLDE
Sbjct: 120 EFHI--------------------THLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
Query: 347 P 347
P
Sbjct: 160 P 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 27/201 (13%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSP---TEGEVR-RSQKL-- 560
E L D+ + I A++GP+G GKSTLL DL P G++ + +
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 561 ----------RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-- 608
+IG Q V+Y R+H ++ + V L L
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 609 PSHNHL-TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALADAL-D 663
+ L LSGGQ+ R+ P ++L+DEP + LD I+ L + L
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 664 EFTGGVVLVSHDSRLISRVCD 684
E+T V++V+H+ + +RV D
Sbjct: 198 EYT--VIIVTHNMQQAARVSD 216
|
Length = 253 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+L+L E++ Y + + VG+ G ++G NGAGK+T +L GD + T G+
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 555 RRSQKLRIGRYSQ------------HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK 602
+ K + S DLLT E L L+ G+ +E K
Sbjct: 1997 TVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH-----LYLYARLRGVPAEEI--EK 2049
Query: 603 LGKFGLPSHNHLTPIAKLSG---GQKARVVFTSISMSK-PHILLLDEPTNHLDMQSIDAL 658
+ + + S +L+G G R + T+I++ P ++LLDEPT +D Q+ L
Sbjct: 2050 VANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML 2109
Query: 659 ADALDEFT---GGVVLVSHDSRLISRVC 683
+ + VVL SH +C
Sbjct: 2110 WNTIVSIIREGRAVVLTSHSMEECEALC 2137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 527 AIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIGRYSQHFVDLLTME 576
A +G NGAGK+T L++L G L PT G V K +G QH ++L
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQH--NILFHH 1017
Query: 577 ETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633
T ++L + +G S +EA + A L GL H LSGG + ++
Sbjct: 1018 LTVAEHIL-FYAQLKGRSWEEAQLEMEAMLEDTGL-HHKRNEEAQDLSGGMQRKLSVAIA 1075
Query: 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSH 674
+ +++LDEPT+ +D S ++ D L ++ G +++ +H
Sbjct: 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 43/178 (24%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQH---F 569
L ++DV I + V + G +G+GKSTL+N + G+ R L ++S++ F
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN----EGLYASGKARLISFLP--KFSRNKLIF 64
Query: 570 VDLL-TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628
+D L + + + YL LG+ ++ LSGG+ RV
Sbjct: 65 IDQLQFLIDVGLGYL------------------TLGQ----------KLSTLSGGELQRV 96
Query: 629 VFTSISMSKPH--ILLLDEPTNHLDMQSIDALADALDEFTG---GVVLVSHDSRLISR 681
S S+P + +LDEP+ L Q I+ L + + V+L+ H+ ++S
Sbjct: 97 KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLE--EYLCRWKKTLVVVSHDR 377
SGG + R+ LARA + +LL+DEP + LD +R L E E + KKT+V VSHD
Sbjct: 166 SGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDL 225
Query: 378 D 378
D
Sbjct: 226 D 226
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 65/224 (29%), Positives = 85/224 (37%), Gaps = 52/224 (23%)
Query: 444 DRAKSAAAKEASKNKAKGKVDEDEPLPEA-PKKWRDYSVEFHFPEPTELTPPLLQLIEVS 502
D ++A G E P E K + + +F EP L
Sbjct: 627 DYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVL----------- 675
Query: 503 FSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV--RRS--- 557
L DV V + G ++G G+GKSTLL L +EG V RS
Sbjct: 676 ----------LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAY 725
Query: 558 --QKLRIG----RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH 611
Q+ I R + F D EE RL D +S+ EA A+LG GL
Sbjct: 726 VPQQAWIMNATVRGNILFFD----EEDAA----RLA-DAVRVSQLEADLAQLGG-GLE-- 773
Query: 612 NHLTPIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
T I + LSGGQKARV + + LLD+P + LD
Sbjct: 774 ---TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 1e-05
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDR 377
+ SGG + R+ +ARA+ ++P +LL+DEPT+ LD A +EE + KK ++++V+H
Sbjct: 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSM 284
Query: 378 DFLNTVCTEIIHLHDQKLHFYRG 400
+ + D+ + FY+G
Sbjct: 285 -------AQAQRISDETVFFYQG 300
|
Length = 329 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQKL 560
F+YP + L +V+ + G + I GP G+GKSTLL+L+ +EG++R L
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 561 RIGRYSQHFVDLLTMEETP------VSYLLRL-HPDQEGLSKQEAVRAKLGK-----FGL 608
+ L + +TP V+ + L PD + A+L L
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHV--ARLASVHDDILRL 437
Query: 609 PSHNHLTPIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664
P + T + + LSGGQK R+ + IL+LD+ + +D ++ + L +
Sbjct: 438 P-QGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496
Query: 665 FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ G ++ RL + E SEI V+++G +
Sbjct: 497 WGEGRTVIISAHRLSALT----EASEILVMQHGHI 527
|
Length = 569 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
+ + N + E+LK ++ I G+ L+GP+G GKSTLL+++A
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA 50
|
Length = 338 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRA-VLWLEEYLCRWKK-TLV 371
R + SGG R R++LAR L +LLLDEP + LD LR +L L + LC ++ TL+
Sbjct: 124 RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLL 183
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKL 395
+V+H + ++I + K+
Sbjct: 184 MVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
KE + + + SGG + +++ARAL +P LLLLDEP+
Sbjct: 123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (110), Expect = 2e-05
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 26/199 (13%)
Query: 186 VRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245
+ + G L+G G GKSTLL+ L P + V GD + + S
Sbjct: 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV--------GD---IVVSSTSK 75
Query: 246 HEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQ--ASK 302
+E+ +R++V + Q S EE L ++ Q G +A+ A++
Sbjct: 76 QKEIKPVRKKVGVVFQFPESQLFEE---------TVLKDVAFGPQNFGIPKEKAEKIAAE 126
Query: 303 ILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA---VLWL 359
L +G E + SGG R+++A L ++P +L+LDEPT LD +A ++ L
Sbjct: 127 KLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL 186
Query: 360 EEYLCRWKKTLVVVSHDRD 378
E + + +T+V+V+H D
Sbjct: 187 FESIHQSGQTVVLVTHLMD 205
|
Length = 288 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 28/197 (14%)
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVG-DDRSAIQAVVSAHEEL 249
G+ G+VG +G GKSTLL LA R L + RS + + E
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGR----------LAPDHGTATYIMRSGAELELYQLSEA 78
Query: 250 VK---LREEVASLQNSTSVDGEEDGDDAN-DAGEKLAELYEKLQILGSDAAEAQA--SKI 303
+ +R E + + DG A + GE+L + + G+ A AQ ++
Sbjct: 79 ERRRLMRTEWGFVHQN-PRDGLRMRVSAGANIGERLMAIGARH--YGNIRATAQDWLEEV 135
Query: 304 LAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL 363
++ P +FSGG + R+ +AR L +P L+ +DEPT LD+ L + L
Sbjct: 136 EIDPTRIDDL---PR-AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 191
Query: 364 CRWKKTL----VVVSHD 376
+ L ++V+HD
Sbjct: 192 RGLVRDLGLAVIIVTHD 208
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 39/199 (19%)
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR-SAIQAVVSAHEEL 249
GK G++GPNG+GKST LK+LA P + EV+ R + +Q
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFK----- 154
Query: 250 VKLRE-EVASLQNSTSVD-------GE-EDGDDANDAGEKLAELYEKLQILGSDAAEAQA 300
KL E E+ ++ VD G+ + D K E+ E+L +
Sbjct: 155 -KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGL---------- 203
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR---AVL 357
+ + R SGG R+++A AL + DEP+++LD+R
Sbjct: 204 ----------ENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253
Query: 358 WLEEYLCRWKKTLVVVSHD 376
+ L K ++VV HD
Sbjct: 254 RVIRELAEDGKYVIVVEHD 272
|
Length = 591 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
S SGG + R+ +AR + ++P +LLLDEP + LD + +EE + K+ T+V+V+H+
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN 214
|
Length = 260 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 37/230 (16%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI-----DVLLVEQEV 231
G++ L+ + + G+ L G +G GKSTLLKL+ + P I D+ ++
Sbjct: 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73
Query: 232 VGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL 291
V R I + H L+ ++ ++ ++ L I
Sbjct: 74 VPFLRRQIGMIFQDHHLLMD-----RTVYDNVAI---------------------PLIIA 107
Query: 292 G--SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN 349
G D + S L +G + + P + SGG + R+ +ARA+ +P +LL DEPT
Sbjct: 108 GASGDDIRRRVSAALDKVGLLDKAKNFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTG 166
Query: 350 HLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396
+LD +L L E R T+++ +HD ++ ++ L D LH
Sbjct: 167 NLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 49/233 (21%)
Query: 492 TPPLLQL--IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKS----TLLNLL-- 543
T PLL + + V+F ++DV + I+ G +A+VG +G+GKS ++L LL
Sbjct: 2 TQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS 61
Query: 544 ------AGD--------LSPTEGEVRRSQKLRIGRYSQH-FVDL--LTMEETPVSYLLRL 586
+GD L +E +R + +I Q V L L E + +L L
Sbjct: 62 PPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSL 121
Query: 587 HPDQEGLSKQEAVRAK----LGKFG-------LPSHNHLTPIAKLSGGQKARVVFTSISM 635
H G+ ++EA R + L + G L + H +LSGG++ RV+ +
Sbjct: 122 H---RGM-RREAARGEILNCLDRVGIRQAAKRLTDYPH-----QLSGGERQRVMIAMALL 172
Query: 636 SKPHILLLDEPTNHLDM----QSIDALADALDEFTGGVVLVSHDSRLISRVCD 684
++P +L+ DEPT LD+ Q + L + E G++ ++H+ ++ ++ D
Sbjct: 173 TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLAD 225
|
Length = 529 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 17/185 (9%)
Query: 488 PTELTPPLLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545
P PP ++ ++ RE D L ++V I G +V IVG GAGKS+L L
Sbjct: 1275 PPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334
Query: 546 DLSPTEGEVRRS--QKLRIGRYSQHFVDLLTMEETPV--SYLLRLHPDQEGLSKQEAV-- 599
EGE+ +IG + F + + + PV S LR++ D E V
Sbjct: 1335 INESAEGEIIIDGLNIAKIGLHDLRF-KITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWW 1393
Query: 600 ---RAKLGKF--GLPS---HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
A L F LP H LS GQ+ V + K IL+LDE T +D
Sbjct: 1394 ALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
Query: 652 MQSID 656
+++ +
Sbjct: 1454 LETDN 1458
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 27/235 (11%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
+K I V A L + + G+ GL G NG GKSTL+K+L+ +
Sbjct: 4 MKGIVKTFGGVKA-----LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDG 58
Query: 223 DVLLVEQEVVGDDRSAIQA--VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEK 280
++ + + + +V H+EL L E++ +N +
Sbjct: 59 EIYWSGSPLKASNIRDTERAGIVIIHQELT-LVPELSVAENIFLGN-------------- 103
Query: 281 LAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
E+ + +A +A +L L + RP + GG + + +A+AL Q
Sbjct: 104 --EITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR 161
Query: 341 LLLLDEPTNHL---DLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392
LL+LDEP++ L + +L + L V +SH + + VC I + D
Sbjct: 162 LLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRD 216
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 37/184 (20%)
Query: 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS-QKLRIGRYSQHFV 570
+ DV + G V I G G G++ L L G P GE+ + +
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRD--- 71
Query: 571 DLLTMEETPVSYLL--RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGG--QK- 625
++Y+ R EGL +V + L S LSGG QK
Sbjct: 72 ----AIRAGIAYVPEDRKR---EGLVLDLSVAENIA---LSSL--------LSGGNQQKV 113
Query: 626 --ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLIS 680
AR + P +L+LDEPT +D+ + + + E V+L+S + +
Sbjct: 114 VLARWL-----ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELL 168
Query: 681 RVCD 684
+CD
Sbjct: 169 GLCD 172
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 30/188 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
LS++++ I G IVG G GKS+LL + G++ EG+V S K F
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKN---ESEPSFEAT 73
Query: 573 LTMEETPVSY------LLRLHPDQ-----EGLSKQ------EAVRAKLGKFGLPSHNHLT 615
+ V+Y LL ++ +KQ +A + LP T
Sbjct: 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLP-FGDQT 132
Query: 616 PIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA-----LDEFT 666
I + LSGGQ+ R+ +I+ LD+P + LD+ D L L +
Sbjct: 133 EIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDK 192
Query: 667 GGVVLVSH 674
+VLV+H
Sbjct: 193 RTLVLVTH 200
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 19/216 (8%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ ++ +V +K S+ ++GP+G GKST+L+ + VP
Sbjct: 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPS----A 60
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
V +++ DD V V +R V + + D AG KL
Sbjct: 61 RVTGKILLDDTDIYDRGVDP----VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRV 116
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS---FSGGWRMRISLARALFVQPTLL 342
+ S+A E S L + E++ R + SGG + R+ +AR + V+P ++
Sbjct: 117 NR-----SEADEIVESS-LKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI 170
Query: 343 LLDEPTNHLDLRAVLWLEEYL--CRWKKTLVVVSHD 376
L+DEP + LD + L +EE + + K T+++V+H+
Sbjct: 171 LMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
SGG + RI++ARAL P +LLLDE T+ LD + ++E L R K T +V++H
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 288 LQILGSDAAEA-----QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
L++ G+ E Q +++L L + R K+ SGG R R+++ R L +P++
Sbjct: 100 LKLAGAKKEEINQRVNQVAEVLQ-LAHLLD---RKPKALSGGQRQRVAIGRTLVAEPSVF 155
Query: 343 LLDEPTNHLD--LRAVLWLE--EYLCRWKKTLVVVSHD 376
LLDEP ++LD LR + +E R +T++ V+HD
Sbjct: 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
|
Length = 369 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 41/205 (20%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL--------------------------NLLAGD 546
L ++++ + A++GP+G GKST L N+L+ +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 547 LSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF 606
+ P E VR +RI Q V+Y LR+ + +E V L
Sbjct: 92 VDPIE--VR----MRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNA 145
Query: 607 GL--PSHNHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDAL-A 659
L + L +A LSGGQ+ R+ + P ILL DEPT+ LD SI+ L +
Sbjct: 146 ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELIS 205
Query: 660 DALDEFTGGVVLVSHDSRLISRVCD 684
D ++ T +++V+H+ + +RV D
Sbjct: 206 DLKNKVT--ILIVTHNMQQAARVSD 228
|
Length = 265 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 19/163 (11%)
Query: 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFV 570
+ L+++ + G V I+G NG+GKSTL NL+AG P +G V + S
Sbjct: 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLN 97
Query: 571 DLLTMEETPVSYLLRLHPDQEGLSKQEAVR--------AKLGKFGLPSHNHLTPIAKLSG 622
LT E + L GL+K++ A +GKF P+ S
Sbjct: 98 GQLTGIEN-----IELKGLMMGLTKEKIKEIIPEIIEFADIGKF------IYQPVKTYSS 146
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665
G K+R+ F P IL++DE + D D ++EF
Sbjct: 147 GMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF 189
|
Length = 549 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSHDRD 378
SGG + R+++ARA+ P +LLLDE T+ LD R + + + +T +V++H
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHR-- 195
Query: 379 FLNTV--CTEIIHLHD 392
L+T+ +II L D
Sbjct: 196 -LSTIVNADKIIVLKD 210
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVE 228
D G + L S G+ + L+G NG GKSTLLK+L+ P +I L+
Sbjct: 8 DGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI--LIDG 65
Query: 229 QEVV-GDDRSAIQA-VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE 286
QE+ +A+ A V ++EL L E+ +N L +L
Sbjct: 66 QEMRFASTTAALAAGVAIIYQEL-HLVPEMTVAENLY-----------------LGQLPH 107
Query: 287 KLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDE 346
K I+ +A + L LG + P K S G R + +A+AL ++ DE
Sbjct: 108 KGGIVNRRLLNYEAREQLEHLGVDIDPD-TPLKYLSIGQRQMVEIAKALARNARVIAFDE 166
Query: 347 PTNHLDLR 354
PT+ L R
Sbjct: 167 PTSSLSAR 174
|
Length = 501 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 34/204 (16%)
Query: 510 DFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSP---TEGEVRRSQKLRIG 563
DF+ L +++ I+ A++GP+G GKST L L DL P EGEV +
Sbjct: 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ---D 71
Query: 564 RYSQHF--------VDLLTMEETP--------VSYLLRLHPDQEGLSKQEAVRAKLGKFG 607
Y V ++ + P V+Y R H ++ E V L
Sbjct: 72 IYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAA 131
Query: 608 L--PSHNHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADA 661
L + L A LSGGQ+ R+ +P +LL+DEPT+ LD S I+ L
Sbjct: 132 LWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE 191
Query: 662 L-DEFTGGVVLVSHDSRLISRVCD 684
L ++T +V+V+H+ + SR+ D
Sbjct: 192 LKKDYT--IVIVTHNMQQASRISD 213
|
Length = 250 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 65/246 (26%), Positives = 93/246 (37%), Gaps = 67/246 (27%)
Query: 155 GQDDADANVKDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL-- 211
G DD I IDN S A R +L++ ++ + LVG G GKSTL LL
Sbjct: 330 GNDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG 389
Query: 212 --AWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEE 269
E E+ D R +S+ V LR+ VA +Q V
Sbjct: 390 YYPLT-------------EGEIRLDGRP-----LSSLSHSV-LRQGVAMVQQDPVV---- 426
Query: 270 DGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT----------K 319
LA+ + LG D +E Q + L + + + P
Sbjct: 427 -----------LADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN 475
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLD----------LRAVLWLEEYLCRWKKT 369
+ S G + ++LAR L P +L+LDE T ++D L AV R T
Sbjct: 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV--------REHTT 527
Query: 370 LVVVSH 375
LVV++H
Sbjct: 528 LVVIAH 533
|
Length = 592 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 26/200 (13%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLL-------NLLAG---------DLSPTEG 552
E+ L +++ I A++GP+G GKSTLL +L+ G D G
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 553 EVRRSQ-KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL--P 609
+ + ++++G Q V+Y LR ++ E V L L
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 610 SHNHL-TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALADAL-DE 664
+ L + LSGGQ+ R+ +P ++L+DEPT+ LD I+ L + L
Sbjct: 135 VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN 194
Query: 665 FTGGVVLVSHDSRLISRVCD 684
+T +V+V+H + R+ D
Sbjct: 195 YT--IVIVTHSMQQARRISD 212
|
Length = 249 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 4e-05
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 25/194 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSPT---EGEVRRSQKLRIGRYSQ 567
L +V++ I + A++GP+G GKST + L DL P EG + I +
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV-DIYDPAV 77
Query: 568 HFVDL------LTMEETP--------VSYLLRLHPDQEGLSKQEAVRAKLGKFGL--PSH 611
V+L + + P V+Y LR+H + + +E V L L
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 612 NHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG-- 668
+ L A LSGGQ+ R+ P ++L+DEP + LD S + D + +
Sbjct: 138 DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYT 197
Query: 669 VVLVSHDSRLISRV 682
+V+V+H+ + +RV
Sbjct: 198 IVIVTHNMQQATRV 211
|
Length = 250 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSH 375
FSGG R R++LAR L ++LLDEPT LD L + KTL+ ++H
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE----FTGGVVL 671
P LSGGQ+ R+ +P +LL+DEP + LD S A+ D ++E +T +V+
Sbjct: 145 PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYT--IVI 202
Query: 672 VSHDSRLISRVCD 684
V+H+ + +RV D
Sbjct: 203 VTHNMQQAARVSD 215
|
Length = 258 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 57/198 (28%)
Query: 526 VAIVGPNGAGKSTLL------------------------NLLAGDLSPTEGEVRRSQKLR 561
A +GP+G GKST+L NL A D+ P E VRR R
Sbjct: 39 TAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE--VRR----R 92
Query: 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS-------KQEA----VRAKLGKFGLPS 610
IG Q ++Y R++ + + +Q A V+ KL + GL
Sbjct: 93 IGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGL-- 150
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALDE-FT 666
LSGGQ+ R+ +P ++L+DEP + LD S I+ L L E +T
Sbjct: 151 --------SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT 202
Query: 667 GGVVLVSHDSRLISRVCD 684
+++V+H+ + +RV D
Sbjct: 203 --IIIVTHNMQQAARVSD 218
|
Length = 264 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 51/184 (27%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV----VG 233
K LL+ SV + GK ++G G GKSTLL+ LL + E+ V
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQ--------------SLLSQFEISEGRVW 718
Query: 234 DDRSAIQAVVSAHEELVKLREEVASLQNSTSVDG-----EEDGDDANDAGEKLAELYEKL 288
+RS A V + A + N+T EED DA ++++L L
Sbjct: 719 AERSI--AYVP----------QQAWIMNATVRGNILFFDEEDAARLADA-VRVSQLEADL 765
Query: 289 QILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
LG G E+ G + SGG + R+SLARA++ + LLD+P
Sbjct: 766 AQLGG--------------GLETEI-GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810
Query: 349 NHLD 352
+ LD
Sbjct: 811 SALD 814
|
Length = 1560 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR---YSQHF 569
L DVD+ I T A +GP+G GKST L L ++ T R + K+ + Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCL-NRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 570 --------VDLLTMEETP--------VSYLLRLHPDQEGLSKQEA-----VRAKLGKFGL 608
V ++ + P V+Y R+H GL++ +A V L K GL
Sbjct: 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIH----GLARSKAELDEIVETSLRKAGL 149
Query: 609 --PSHNHLT-PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALADAL 662
+ L P LSGGQ+ R+ P ++L+DEP + LD ++ L D L
Sbjct: 150 WEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209
Query: 663 -DEFTGGVVLVSHDSRLISRV 682
+T +V+V+H + +RV
Sbjct: 210 RQNYT--IVIVTHSMQQAARV 228
|
Length = 267 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 54/166 (32%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSY 582
G + IVGPNG GK+T + +LAG L P D +T P Y
Sbjct: 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE--------------WDGITPVYKP-QY 69
Query: 583 LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642
+ LSGG+ RV + + L
Sbjct: 70 I-----------------------------------DLSGGELQRVAIAAALLRNATFYL 94
Query: 643 LDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCD 684
DEP+ +LD++ A A+ + ++V HD ++ + D
Sbjct: 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD 140
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWL-EEYLCRW--KKTLVVVSHD 376
+ SGG R RISLARA++ L LLD P +LD+ + E +C+ KT ++V+
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSK 218
Query: 377 RDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+ L +I+ LH+ +FY G F + +S
Sbjct: 219 MEHLKKA-DKILILHEGSSYFY-GTFSELQS 247
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL--CRWKK 368
K+ P SGG + R+ +ARA+ V P ++L+DEP + LD A +EE + R
Sbjct: 154 KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNY 213
Query: 369 TLVVVSH 375
T+V+V+H
Sbjct: 214 TIVIVTH 220
|
Length = 267 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 6e-05
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 526 VAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564
+VG +G GKSTLLN L +L GE+ S+KL GR
Sbjct: 88 SVLVGQSGVGKSTLLNALLPELVLATGEI--SEKLGRGR 124
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
PL++L +S S+ +E +S++D+ I+ G + ++GP+G GK+T+L L+AG +P
Sbjct: 11 LSPLVELRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS 68
Query: 552 GEV 554
G +
Sbjct: 69 GRI 71
|
Length = 375 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-05
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 388 IHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKV-KDRA 446
+ L + KL Y+GN+ + EQ+ + + ++ + YEKQ K K+ +E + + RA
Sbjct: 1 LELENGKLTTYKGNYSQYL---EQKEERLEQQEKAYEKQQKEIKK-----LEEFIDRFRA 52
Query: 447 KSAAAKEA-SKNKAKGKVDEDEPLPEAPKKWR 477
K++ AK+A S+ KA K++ E E K R
Sbjct: 53 KASKAKQAQSRIKALEKMERIEKPVEKKPKIR 84
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 7e-05
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDL---SP 549
+ ++ +F Y NR L D+++ I A +GP+G GKST L L DL +
Sbjct: 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTS 139
Query: 550 TEGEV------RRSQKL-------RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQ 596
EGE+ RS+K+ RIG Q T E + + P G++ +
Sbjct: 140 HEGEIYFLGTNTRSKKISSLELRTRIGMVFQK----PTPFEMSIFDNVAYGPRNNGINDR 195
Query: 597 EAVRAKLGKFGLPSHNHLTPIAK--------LSGGQKARVVFTSISMSKPHILLLDEPTN 648
+ + K+ + L S + LSGGQ+ R+ +P +LL+DEPT+
Sbjct: 196 K-ILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 649 HLDMQSIDALADALDEFTG--GVVLVSHDSRLISRVCDD 685
LD + + + + E +++V+H R+ D+
Sbjct: 255 ALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDE 293
|
Length = 329 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L+L V SY + + +D+ + G + +VGP+G GKSTLL ++AG T GE+
Sbjct: 4 LKLQAVRKSYDGKT-QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
|
Length = 356 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 29/212 (13%)
Query: 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHE 247
I G L+GP+G GK+T+L+L+A + P I ++ E V +IQ
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI---FIDGEDVTH--RSIQ-----QR 78
Query: 248 ELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL 307
++ + + A L S+ GE G G E ++++ EA LAG
Sbjct: 79 DICMVFQSYA-LFPHMSL-GENVGYGLKMLGVPKEERKQRVK-------EALELVDLAG- 128
Query: 308 GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLW--LEEYL 363
+ R SGG + R++LARAL ++P +LL DEP ++LD LR + + E
Sbjct: 129 -----FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183
Query: 364 CRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
++ T + V+HD+ V +I ++ K+
Sbjct: 184 QQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215
|
Length = 351 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 32/168 (19%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS----PTEGEVR------------- 555
L +D I G ++G G+G STLL +A + EG +
Sbjct: 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHY 136
Query: 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ---EGLSKQEAVRAK----LGKFGL 608
R + HF LT+ ET + + R Q +G+S++E + + +GL
Sbjct: 137 RGDVVYNAETDVHF-PHLTVGET-LDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL 194
Query: 609 PSHNHLTP-----IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
SH T + +SGG++ RV S+ I D T LD
Sbjct: 195 -SHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 30/215 (13%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
LLQL + ++P + LS + + G +A+VG NGAGKST++ +L G + G
Sbjct: 3 ALLQLKGIDKAFPGVK--ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS 60
Query: 554 V------------RRSQKLRIGRYSQ--HFVDLLTMEET------PVSYLLRLHPDQEGL 593
+ + SQ+ IG Q + + LT+ E V+ R+ +
Sbjct: 61 ILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKK--- 117
Query: 594 SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
EA + L + L + + +LS G++ V + + ++++DEPT+ L
Sbjct: 118 MYAEADKL-LARLNLRFSSD-KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
Query: 654 SIDALADALDEFTG---GVVLVSHDSRLISRVCDD 685
++L + E G+V +SH + I +CDD
Sbjct: 176 ETESLFRVIRELKSQGRGIVYISHRLKEIFEICDD 210
|
Length = 501 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYL 363
GLG+ G+ + SGG R+ LA LF +P TL +LDEP+ L + + L E +
Sbjct: 75 GLGYLT--LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI 132
Query: 364 CRW---KKTLVVVSHDRDFLNT 382
T++++ H+ D L++
Sbjct: 133 KGLIDLGNTVILIEHNLDVLSS 154
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
+ + S L S+ + G+ L+GP+G GK+TLL+L+A
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA 47
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-04
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDRD 378
S G R + +ARAL LL+LDEPT L V L + + R + ++ +SH D
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143
Query: 379 FLNTVCTEIIHLHD 392
+ + + L D
Sbjct: 144 EVFEIADRVTVLRD 157
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 24/195 (12%)
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELV 250
G+ G+VG +G GK+TLLK ++ R P + + + + R S E
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQ----PRDLYTM--SEAERRR 85
Query: 251 KLREEVASLQNSTSVDGEEDGDDAN-DAGEKL----AELYEKLQILGSDAAEAQASKILA 305
LR E + + DG A + GE+L A Y ++ D E ++
Sbjct: 86 LLRTEWGFVHQNPR-DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLE----EVEI 140
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL----RAVLWLEE 361
L + P +FSGG + R+ +AR L +P L+ +DEPT LD+ R + L
Sbjct: 141 DLDRIDD---LPR-TFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 196
Query: 362 YLCRWKKTLVVVSHD 376
+ +V+V+HD
Sbjct: 197 LVRELGLAVVIVTHD 211
|
Length = 258 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSPTE--GEV 554
+V SY N E L + + + A++GP+G GKST L N + D+ + GE+
Sbjct: 9 DVHLSYGNYE--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI 66
Query: 555 R------RSQKLRIGRYSQHFVDLLTMEETP--------VSYLLRLH--PDQEGLSKQEA 598
+ K+ + + V ++ + TP V+Y L++ D+E + ++
Sbjct: 67 KFEGQNIYGSKMDLVELRKE-VGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVE 125
Query: 599 VRAKLGKFGLPSHNHLTPIAK-LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDA 657
K + ++L A+ SGGQ+ R+ +P ++LLDEPT+ LD S
Sbjct: 126 ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185
Query: 658 LADALDEFTG--GVVLVSHDSRLISRVCD 684
+ + L E ++V+H+ + R+ D
Sbjct: 186 IEETLMELKHQYTFIMVTHNLQQAGRISD 214
|
Length = 251 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 28/197 (14%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
L+ S+ ++ G + VG NG GKS L + LA + G+ +S
Sbjct: 19 LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS-------------GERQSQFS 65
Query: 241 AVVS-AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQ 299
+ + E+L KL + N+ + ED D G AE+ I A+
Sbjct: 66 HITRLSFEQLQKLVSDEWQRNNTDMLSPGED-----DTGRTTAEI-----IQDEVKDPAR 115
Query: 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWL 359
++ G T + R K S G + L +AL +P LL+LDEP + LD+ + L
Sbjct: 116 CEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174
Query: 360 EEYLCRWKK---TLVVV 373
E L + TLV+V
Sbjct: 175 AELLASLHQSGITLVLV 191
|
Length = 490 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHD 376
+ S G R +++ARA+ P +L+LDE T+++D ++E L + K T ++++H
Sbjct: 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHR 197
Query: 377 RDFLNTV--CTEIIHLHDQKL 395
L+T+ +I+ L D K+
Sbjct: 198 ---LSTIKNADKILVLDDGKI 215
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 49/242 (20%)
Query: 517 DVGIDMGTR--VAIVGPNGAGKSTLLNLL--AGDLSP---TEGEVRRSQKLRIGRYSQHF 569
D+ +D+ R A +GP+G GKST L D P +GE+ I YS
Sbjct: 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG---IDVYSVDT 79
Query: 570 --------VDLLTMEETP--------VSYLLRLHPDQEGLSKQ-----EAVRAKLGKFGL 608
V ++ + P V+Y +LH GL+K E V L GL
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLH----GLAKNKKKLDEIVEKSLTSVGL 135
Query: 609 PSH--NHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE- 664
+ L A +LSGGQ+ R+ KP +LL+DEP + LD + + + + + E
Sbjct: 136 WEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL 195
Query: 665 ---FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKAEV 721
FT +++V+H + +V D + ++G + + T E +K + K +
Sbjct: 196 KKNFT--IIVVTHSMKQAKKVSD-----RVAFFQSGRIVEYNTTQEIFKNPQSSKTKRYI 248
Query: 722 DD 723
D
Sbjct: 249 VD 250
|
Length = 251 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
FSGG R R+ +A AL +P LL+ DEPT LD
Sbjct: 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 36/203 (17%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--------------DLS--PTEGEVRR 556
+ DV + ++ G V ++GPNGAGK+T ++ G D+S P RR
Sbjct: 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78
Query: 557 S-----QKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH 611
Q+ I R + +L+ +L++ D +++ + +F + H
Sbjct: 79 GIGYLPQEASIFRRLSVYDNLMA--------VLQIRDDLSAEQREDRANELMEEFHI-EH 129
Query: 612 NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALDEFTGG 668
+ LSGG++ RV + P +LLDEP +D S I + + L + G
Sbjct: 130 LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG 189
Query: 669 VVLVSHDSRLISRVCDDEERSEI 691
V++ H+ R VC ER+ I
Sbjct: 190 VLITDHNVRETLAVC---ERAYI 209
|
Length = 241 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 27/211 (12%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
+ +LK ++ S GLVG NG GKSTL N+ LL Q+ G
Sbjct: 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFM-----------NLSGLLRPQK--GAVLW 60
Query: 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAE 297
+ + + L+ LR++VA++ +D + + +++ L+ LG AE
Sbjct: 61 QGKPLDYSKRGLLALRQQVATVF--------QDPEQQIFYTDIDSDIAFSLRNLGVPEAE 112
Query: 298 AQASKILAGLGFTKEMQGR--PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA 355
++ L R P + S G + R+++A AL +Q LLLDEPT LD
Sbjct: 113 I-TRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171
Query: 356 ---VLWLEEYLCRWKKTLVVVSHDRDFLNTV 383
++ + + +++ SHD D + +
Sbjct: 172 RTQMIAIIRRIVAQGNHVIISSHDIDLIYEI 202
|
Length = 271 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 290 ILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN 349
+L AA A+ + +L +G E R FSGG R RI +ARAL + P +++ DE +
Sbjct: 433 LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVS 492
Query: 350 HLDL 353
LD+
Sbjct: 493 ALDV 496
|
Length = 623 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLEEYLCRWKKT 369
E R SGG + R+++ARA+ +P +LLLDE + LD LR + E L ++
Sbjct: 136 EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE--LKALQRK 193
Query: 370 L----VVVSHDR 377
L V V+HD+
Sbjct: 194 LGITFVFVTHDQ 205
|
Length = 375 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 609 PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALDEF 665
P H T I LSGG + +V+ +++P IL+LDEPT +D+ + I L L +
Sbjct: 383 PGHR--TQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK 440
Query: 666 TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREI 717
G++++S + + + D I V+ NG V+ T K Q EI
Sbjct: 441 DKGIIIISSEMPELLGITD-----RILVMSNGLVAGIVDT----KTTTQNEI 483
|
Length = 491 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 46/231 (19%)
Query: 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID--VLLVEQEVVG-------DD 235
++R+ G+ G+VG +G GKST + + I + K D V + ++++G
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAI----IGLVKATDGEVAWLGKDLLGMKDDEWRAV 96
Query: 236 RSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI-LGSD 294
RS IQ + ++ +ASL ++ GE +AE L
Sbjct: 97 RSDIQMI---------FQDPLASLNPRMTI------------GEIIAEPLRTYHPKLSRQ 135
Query: 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL- 353
+ + ++ +G + R FSGG RI +ARAL ++P L++ DEP + LD+
Sbjct: 136 EVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195
Query: 354 ---RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401
+ V L++ +L+ ++HD L V H+ D+ L Y G+
Sbjct: 196 IQAQVVNLLQQLQREMGLSLIFIAHD---LAVV----KHISDRVLVMYLGH 239
|
Length = 331 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 53/206 (25%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVRRSQKLRIGRYSQHFV 570
L +++ I+ G AI+GPNG+GKSTL ++AG EG++ +
Sbjct: 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGE----------- 71
Query: 571 DLLTMEETPVSYL--------------------LRL----------HPDQEGLSKQEAVR 600
+L +E ++L LRL P+ + L E +
Sbjct: 72 SILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIIN 131
Query: 601 AKLGKFGL-PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL- 658
KL G+ PS SGG+K R +++ + +LDE + LD IDAL
Sbjct: 132 EKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD---IDALK 188
Query: 659 --ADALDEF---TGGVVLVSHDSRLI 679
A+ +++ ++L++H RL+
Sbjct: 189 IIAEGINKLMTSENSIILITHYQRLL 214
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 42/208 (20%)
Query: 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244
++ I G +G G GKST+++LL + VP V + + + ++ +
Sbjct: 27 NLTIEDGSYTAFIGHTGSGKSTIMQLL--NGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84
Query: 245 AHEELV------KLREE-----VASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS 293
LV +L EE VA + V EE
Sbjct: 85 KKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE------------------------ 120
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD- 352
AEA A + LA +G ++ + + SGG R+++A L ++P +L+LDEPT LD
Sbjct: 121 --AEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
Query: 353 --LRAVLWLEEYLCRWKKTLVVVSHDRD 378
+ ++ L + L + T+V+V+H D
Sbjct: 179 KGRKELMTLFKKLHQSGMTIVLVTHLMD 206
|
Length = 280 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLW-LEEYLCRWKKTLVVVSHDR 377
S G R++LARAL LLLLDEPT LD + V+ L R +T ++V+H
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR--QTTLMVTHQL 544
Query: 378 DFLNTVCTEIIHLHDQKLHFYRGNFDD 404
+ L +I + D ++ +G++ +
Sbjct: 545 EDL-AQWDQIWVMQDGQI-VQQGDYAE 569
|
Length = 588 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 291 LGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348
+G EA+ A+K + +G + R SGG + R++LA L ++P L+ DEPT
Sbjct: 134 MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPT 193
Query: 349 NHLDLRAV---LWLEEYLCRWKKTLVVVSHDRD 378
LD + V L + + L + KT+++V+HD D
Sbjct: 194 AGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226
|
Length = 305 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 24/60 (40%), Positives = 29/60 (48%)
Query: 293 SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SD + A + L LG K P S S G + + RAL PTLL+LDEP LD
Sbjct: 374 SDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Query: 620 LSGGQKARV-VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE----FTGGVVLVSH 674
LSGGQ+ R+ + +I++ KP ILL+DEP + LD S L + + E +T +++V+H
Sbjct: 164 LSGGQQQRLCIARAIAV-KPDILLMDEPASALDPISTMQLEETMFELKKNYT--IIIVTH 220
Query: 675 DSRLISRVCD 684
+ + +R D
Sbjct: 221 NMQQAARASD 230
|
Length = 267 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 42/212 (19%)
Query: 514 SDVDVGIDMGTRVAIVGPNGAGKS----TLLNLLAGDLSPTEGEVR------RSQKLRIG 563
V + + G +A+VG +G+GKS L +L + T G V LR G
Sbjct: 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR-G 78
Query: 564 RY--------SQHFVDLLTMEETPVSYLL---RLHPDQEGLSKQEAVRAKLGKFGLPSHN 612
R F L TM L + D + EAV GL +
Sbjct: 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAV-------GLENAA 131
Query: 613 ---HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDALADALDEF 665
L P ++SGG R++ + + ++ DEPT LD + +D L + +
Sbjct: 132 RVLKLYPF-EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190
Query: 666 TGGVVLVSHDSRLISRVCDDEERSEIWVVENG 697
G++LV+HD +++R+ DD + V+ +G
Sbjct: 191 ALGMLLVTHDMGVVARLADD-----VAVMSHG 217
|
Length = 254 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 35/165 (21%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP--TEGEVRRS-----QKL--RIG 563
L +V G A++G +GAGK+TL+++LAG + EG++R S Q+ RI
Sbjct: 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 955
Query: 564 RYSQ----HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR-------------AKLGKF 606
Y + H + E S LRL P + +SK+E + K
Sbjct: 956 GYCEQNDIHSPQVTVRESLIYSAFLRL-PKE--VSKEEKMMFVDEVMELVELDNLKDAIV 1012
Query: 607 GLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
GLP + LS Q+ R+ ++ P I+ +DEPT+ LD
Sbjct: 1013 GLPG------VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
Length = 1470 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 32/154 (20%)
Query: 528 IVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLH 587
I+G +G+GKSTL+ G + G ++ + IG + + + L
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQ-VGDIYIGDKKNNHELITNPYSKKIKNFKELR 115
Query: 588 --------------------------PDQEGLSKQEAV-RAK--LGKFGLP-SHNHLTPI 617
P G+ K EA AK L K GL S+ +P
Sbjct: 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
LSGGQK RV I +P IL+ DEPT LD
Sbjct: 176 -GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLD 208
|
Length = 320 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 58/250 (23%), Positives = 112/250 (44%), Gaps = 34/250 (13%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK-------IPV 218
++I + V+ K +L+ ++ + G+ + ++GPNG GKSTL LA R+
Sbjct: 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 61
Query: 219 PKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS---LQNSTSVDGEEDGDDAN 275
K D+L + E DR A + + A + V++ V++ LQ + + G +
Sbjct: 62 FKGKDLLELSPE----DR-AGEGIFMAFQYPVEI-PGVSNQFFLQTALNAVRSYRGQEPL 115
Query: 276 DAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL 335
D + + EK+ +L S +GF SGG + R + +
Sbjct: 116 DRFDFQDLMEEKIALLKMPEDLLTRS---VNVGF------------SGGEKKRNDILQMA 160
Query: 336 FVQPTLLLLDEPTNHLDLRAVLWLEE---YLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392
++P L +LDE + LD+ A+ + + L K++ ++V+H + L+ + + +H+
Sbjct: 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLY 220
Query: 393 QKLHFYRGNF 402
Q G+F
Sbjct: 221 QGRIVKSGDF 230
|
Length = 248 |
| >gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 2e-04
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 617 IAKLSGGQKARVVFTSISMS------------KPHILLLDEPTNHLDMQSIDALADALDE 664
LSGG+K + + +++ + P ++ LDE LD ++I +L + L E
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
|
Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 44/244 (18%)
Query: 148 SRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTL 207
SR+ + D +V ++ + V G L ++I K +GP+G GKSTL
Sbjct: 5 SRSQSDSATINPDHSVFEV--EGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTL 62
Query: 208 LKLLAWRK--IPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA-------- 257
L+ IP K VE ++ DR+ + +++ VKLR +V
Sbjct: 63 LRCFNRMNDLIPGAK------VEGRLLYRDRNIYDSQINS----VKLRRQVGMVFQRPNP 112
Query: 258 ---SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314
S+ + + +G N L EL E L A + L G
Sbjct: 113 FPKSIYENIAFAPRANGYKGN-----LDELVE--DSLRRAAIWEEVKDKLKEKG------ 159
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVV 372
+ SGG + R+ +ARA+ ++P +LL+DEP + LD + +EE K+ T+++
Sbjct: 160 ----TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIM 215
Query: 373 VSHD 376
V+H+
Sbjct: 216 VTHN 219
|
Length = 274 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 526 VAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564
+ G +G GKSTLLN L +L GE+ S+KL GR
Sbjct: 38 SVLAGQSGVGKSTLLNALLPELDLRTGEI--SEKLGRGR 74
|
Length = 161 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
L + S+ I G++ ++G G GKSTLLKLLA
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA 51
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA 355
A+ +A +++ +G +E+ R SGG R+++A L ++P +L+LDEPT LD +
Sbjct: 121 AKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180
Query: 356 VLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTEIIHLH 391
+ E + K T V+V+H + +I+ +H
Sbjct: 181 RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH 220
|
Length = 290 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 32/219 (14%)
Query: 166 ITIDNFSVAARGKE--LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
I N S + LK S I G+ +VG NG GKST+ KL+ I K+ +
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMI--GIEKVKSGE 65
Query: 224 VLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA-SLQN-STSVDGEEDGDDANDAGEKL 281
+ Q + D+ KLR+ + QN G D E
Sbjct: 66 IFYNNQAITDDN-------------FEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH 112
Query: 282 AELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
A Y+++ + S+ L + + P + SGG + R+++A L + P++
Sbjct: 113 AVPYDEMH--------RRVSEALKQVDMLERADYEP-NALSGGQKQRVAIAGVLALNPSV 163
Query: 342 LLLDEPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHD 376
++LDE T+ LD A L + + + K T++ ++HD
Sbjct: 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
PT +FSGG + R+ +AR L P L+ +DEPT LD
Sbjct: 148 LPT-TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
++ S SGG R R+ +ARAL P +LLDEP
Sbjct: 130 THLRDSKAYSLSGGERRRVEIARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 34/211 (16%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L D+ ++ G RV ++G G+GKSTLL+ L LS TEGE+ +I S + V L
Sbjct: 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEI------QIDGVSWNSVTL 1287
Query: 573 LTMEET----P-----VSYLLRLHPD-QEGLSKQEAVRAKLGKFGLPSHNHLTPIA---- 618
T + P S R + D E S +E + + GL S P
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVA-EEVGLKSVIEQFPDKLDFV 1346
Query: 619 ------KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE-FTGGVVL 671
LS G K + +SK ILLLDEP+ HLD ++ + L + F+ V+
Sbjct: 1347 LVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVI 1406
Query: 672 VSHDSRLISRVCDDEERSEIWVVENGTVSRF 702
+S RV E + V+E +V ++
Sbjct: 1407 LSE-----HRVEALLECQQFLVIEGSSVKQY 1432
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLE-----EYLCRWKKTLVVVS 374
+ SGG R RI +ARAL+ ++ LD+P + LD+ L ++L K+TLV+V+
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 375 HDRDFL 380
H +L
Sbjct: 200 HKLQYL 205
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 28/198 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSPT----------------EGEV 554
+ DV + + AI+GP+G GKST+L + DL P+ G
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 555 RRSQKLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL--P 609
S + R+G Q F + + Y L ++ E V + L + L
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRS--EADEIVESSLKRVALWDE 137
Query: 610 SHNHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG- 667
+ L A +LSGGQ+ R+ KP ++L+DEP + LD S + + ++E
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 668 -GVVLVSHDSRLISRVCD 684
+++V+H+ + +RV D
Sbjct: 198 YTIIIVTHNMQQAARVSD 215
|
Length = 252 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS----QKLRIGRYSQH 568
L ++ I G RV ++G G+GKSTLL+ L+ TEG+++ + + ++ +
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78
Query: 569 FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA---------- 618
F ++ + S R + D G E + + GL S P
Sbjct: 79 F-GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGC 137
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE-FTGGVVLVS 673
LS G K + +SK ILLLDEP+ HLD + + L + F V++S
Sbjct: 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS 193
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 48/244 (19%)
Query: 488 PTELTPPLLQLIEVSFSY-PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546
P E P + + FS+ E LS++++ + +G+ VAIVG G GK++L++ + G+
Sbjct: 607 PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE 666
Query: 547 LSPTEGE--VRRSQKLRIGRYSQHFVD------LLTMEETPVSY-----LLRLHPDQEGL 593
L P V R + + S F L P Y + L D + L
Sbjct: 667 LPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLL 726
Query: 594 SKQEAVRAKLGKFGLPSHNHLTPIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNH 649
P + LT I + +SGGQK RV S + + D+P +
Sbjct: 727 ---------------PGGD-LTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770
Query: 650 LDM----QSIDA-LADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPG 704
LD Q D + D L T VLV++ +S+V I +V G + G
Sbjct: 771 LDAHVGRQVFDKCIKDELRGKTR--VLVTNQLHFLSQV------DRIILVHEGMIKE-EG 821
Query: 705 TFEE 708
T+EE
Sbjct: 822 TYEE 825
|
Length = 1622 |
| >gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 38/180 (21%)
Query: 527 AIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRL 586
I GP GAGKST+L+ + L G+ R + R + + VS+ +L
Sbjct: 32 LICGPTGAGKSTILDAITYALY---GKTPRYGRQENLRSVFAPGE----DTAEVSFTFQL 84
Query: 587 HPD------QEGLSKQEAVRAKL---GKFGLPSHNHLT--PIAKLSGGQKARVVFTSISM 635
GL + R L G+F + P++ LSGG+ S+++
Sbjct: 85 GGKKYRVERSRGLDYDQFTRIVLLPQGEF-----DRFLARPVSTLSGGETFLASL-SLAL 138
Query: 636 SKPHI-----------LLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSHDSRLISR 681
+ + L +DE LD ++++A+A AL+ V ++SH L R
Sbjct: 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKER 198
|
SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
A +A ++LA LG + S R + +ARAL +L+LDEPT L +
Sbjct: 120 KAMRRRARELLARLGLDIDPD-TLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178
Query: 354 RAVLWLEEYLCRWKK---TLVVVSHDRDFLNTVCTEIIHLHD 392
+ L + + R K ++ +SH D + + I L D
Sbjct: 179 KETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRD 220
|
Length = 500 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 42/215 (19%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
KE L + + R ++GPNG GKSTL + I P + VL+ + + ++
Sbjct: 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHF--NGILKPTSGSVLIRGEPITKENIR 74
Query: 238 AIQAVVSAHEELVKLREEVASLQN------STSVDGEEDGDDANDAGEKLAELYEKLQIL 291
++ V LV QN S +V+ + N L
Sbjct: 75 EVRKFVG----LV--------FQNPDDQIFSPTVEQDIAFGPIN---------------L 107
Query: 292 GSD--AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN 349
G D + S L LG +E++ R SGG + R+++A + ++P +L+LDEPT
Sbjct: 108 GLDEETVAHRVSSALHMLGL-EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166
Query: 350 HLDLRAV----LWLEEYLCRWKKTLVVVSHDRDFL 380
LD + V +L + + T++ +H D +
Sbjct: 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201
|
Length = 277 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
G+ +LK S I GK+ +VGP+G GKST+L+LL
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL 47
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSH 375
S SGG + RI+LARAL +L+LDE T++LD + + + L KT++ V+H
Sbjct: 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI--VNNLLNLQDKTIIFVAH 667
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 42/231 (18%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
K L S I G L+G NG GKST+ KL I+ LL+ + + S
Sbjct: 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKL-----------INGLLLPDD---NPNS 65
Query: 238 AIQ--AVVSAHEELVKLREEVA-SLQN-STSVDGEEDGDDANDAGEKLAELYEKLQILGS 293
I + + + +RE+V QN G GDD E A ++ +
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-- 123
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD- 352
+LA +G + P + SGG + R+++A L V+P +++LDE T+ LD
Sbjct: 124 ------VRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP 176
Query: 353 ------LRAVLWLEEYLCRWKKTLVVVS--HDRDFLNTVCTEIIHLHDQKL 395
L+ + L++ K L V+S HD D N + +++ L D KL
Sbjct: 177 AGKEQILKLIRKLKK-----KNNLTVISITHDIDEAN-MADQVLVLDDGKL 221
|
Length = 282 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
+T D+ VA R + +L+ S+RI G+ L+G NG GKSTLLK LA
Sbjct: 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALA 48
|
Length = 272 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSHD 675
LSGGQ+ R+ + IL+LDE T+ LD +S A+ ALDE ++++H
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH- 537
Query: 676 SRLISRVCDDEERSEIWVVENGTV 699
R+ E+ EI VVE+G +
Sbjct: 538 -----RLSTIEKADEILVVEDGEI 556
|
Length = 582 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 316 RPTKSFSGGWRM------RISLARALFVQPTLLLLDEPTNHLD---LRAVL--WLEEYLC 364
SGG ++ R++LA +L LDEPT +LD + L +EE
Sbjct: 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170
Query: 365 RWKKTLVVVSHDRDFLN 381
+ L+V++HD + ++
Sbjct: 171 QKNFQLIVITHDEELVD 187
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 32/199 (16%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L V +G +++GP G+GK+T L L G L GR ++ D+
Sbjct: 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96
Query: 573 LTMEET-----------PVSYL------LRLH---PDQEGLSKQEAVRAKLGKFGLPSHN 612
L P+S + +R H P +E +A ++G +
Sbjct: 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDR 156
Query: 613 HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS-------IDALADALDEF 665
+LSGGQ+ + P +LLLDEPT+ LD + I +LAD L
Sbjct: 157 LSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT-- 214
Query: 666 TGGVVLVSHDSRLISRVCD 684
V++V+H+ +R+ D
Sbjct: 215 ---VIIVTHNLAQAARISD 230
|
Length = 276 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK---KTLVV 372
+P K++S G + R+ A ++ + P +L++DE + D + + +K KT+
Sbjct: 139 QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFF 198
Query: 373 VSHDRDFLNTVCTEIIHLHDQKLHFY------RGNFDDFESGYEQRRKEMNKKFEIYEKQ 426
+SH + + CT+ + LH ++ Y ++D+F Y Q E K F E+Q
Sbjct: 199 ISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVEERKDFR--EEQ 256
Query: 427 V------------KAAKRSGNRVQQEKVKDRAK 447
+ +R + ++ K + K
Sbjct: 257 ISQFQHGLLQEDQTGRERKRKKGKKTSRKFKKK 289
|
Length = 549 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 523 GTRVAIVG-PNGAGKSTLLNLLAGD 546
G +V I G PN GKS+LLN LAG
Sbjct: 3 GIKVVIAGKPN-VGKSSLLNALAGR 26
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 23/206 (11%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
+ + + GK Y +VG G GKSTL++ + P + V DD +
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV---------DDIT 70
Query: 238 AIQAVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAA 296
+ + +R+ + + Q S E D E+ K + D
Sbjct: 71 ITHKTKDKY--IRPVRKRIGMVFQFPESQLFE-------DTVEREIIFGPKNFKMNLDEV 121
Query: 297 EAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA- 355
+ A ++L LGF++++ + SGG +I++ L + P +++LDEPT LD ++
Sbjct: 122 KNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSK 181
Query: 356 ---VLWLEEYLCRWKKTLVVVSHDRD 378
+ L+ KT+++VSHD +
Sbjct: 182 RQVMRLLKSLQTDENKTIILVSHDMN 207
|
Length = 286 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLD--MQSIDALADALDEFTGGVVLVSHDSR 677
LSGGQ+ R++ + KP ILL DE T+ LD Q+I ++++L+ ++++H R
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI--VSESLERLKVTRIVIAH--R 644
Query: 678 LIS-RVCDDEERSEIWVVENGTVSRFPGTFEE 708
L + R D I+V++ G V + GT++E
Sbjct: 645 LSTIRNAD-----RIYVLDAGRVVQ-QGTYDE 670
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 5e-04
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 37/220 (16%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTR--VAIVGPNGAGKSTLLNLL--AGDL-- 547
P +++ V+F Y + K ++ +D R AI+GP+G GKSTLL L D+
Sbjct: 3 PKIKIRGVNFFYHKHQVLK----NINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVS 58
Query: 548 -SPTEGEVRRSQKLRIGRYSQHF--------VDLLTMEETPVSYLL----RLHPDQEGLS 594
+ EG V + YS + V ++ + P + P G +
Sbjct: 59 GARLEGAVLLDNE---NIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTT 115
Query: 595 KQ----EAVRAKLGKFGL----PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646
Q E V L + L + H + +A LSGGQ+ R+ + +P ++L+DEP
Sbjct: 116 AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA-LSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 647 TNHLDMQSIDALADALDEFTGG--VVLVSHDSRLISRVCD 684
+ LD S + + + E + +V+H+ + +R D
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASD 214
|
Length = 251 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 39/205 (19%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVRRSQK----------- 559
L +++ + G AI+GPNG+GKSTL LAG D T G V K
Sbjct: 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA 76
Query: 560 -----------LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK---QEAVRAKLGK 605
+ I S F +T ++ +R + QE L + Q+ + K+
Sbjct: 77 GEGIFMAFQYPVEIPGVSNQF-----FLQTALN-AVRSYRGQEPLDRFDFQDLMEEKIAL 130
Query: 606 FGLPSHNHLTPIAKL--SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALD 663
+P + LT + SGG+K R +++ +P + +LDE + LD+ ++ +AD ++
Sbjct: 131 LKMPE-DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189
Query: 664 EFTGG---VVLVSHDSRLISRVCDD 685
G ++V+H R++ + D
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPD 214
|
Length = 248 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 45/205 (21%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSP---TEGEVR-RSQKLRIGRYS 566
L DV + I +A +GP+G GKSTLL DL P EG + R + + + +
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 567 ----QHFVDLLTMEETP--------VSYLLRLHPDQEGLSK-----------QEAVRAKL 603
+ V ++ P +++ R + + L + E V+ KL
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKL 155
Query: 604 GKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALAD 660
+ G LSGGQ+ R+ KP +LL+DEP + LD + ++ L
Sbjct: 156 KEKG----------TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205
Query: 661 ALDE-FTGGVVLVSHDSRLISRVCD 684
L E +T +++V+H+ + SRV D
Sbjct: 206 ELKEQYT--IIMVTHNMQQASRVAD 228
|
Length = 274 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK----TLVVVSH 375
+ SGG + R+++ARAL Q ++L DEP LD + + + L + T+VV H
Sbjct: 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLH 211
Query: 376 DRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAA 430
D+ C I+ L Q FY G+ F++ +R + + E+ KAA
Sbjct: 212 QVDYALRYCERIVALR-QGHVFYDGSSQQFDN---ERFDHLYRSINRVEENAKAA 262
|
Length = 262 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 57/212 (26%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSP---TEGEVRRSQKLRIGR--Y 565
L D+ + + A++GP+G GKST L L DL P EGE+ G Y
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD-----GENIY 76
Query: 566 SQHFVDLLTME-------ETP----------VSYLLRLH--PDQEGLSKQ---------- 596
H VD++ + + P V+Y LR++ D+ L+++
Sbjct: 77 DPH-VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL 135
Query: 597 -EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---M 652
+ V+ +L + L LSGGQ+ R+ +P +LL+DEP + LD
Sbjct: 136 WDEVKDRLHESAL----------GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 653 QSIDALADALDEFTGGVVLVSHDSRLISRVCD 684
Q I+ L L +++V+H+ + +RV D
Sbjct: 186 QKIEELIHELKA-RYTIIIVTHNMQQAARVSD 216
|
Length = 253 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 41/248 (16%)
Query: 466 DEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYP---------NREDFKLSDV 516
+ P + P +D V+ P+LQ+ + +P RE + V
Sbjct: 293 EHPAKQEPPIEQDTVVD---------GEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKV 343
Query: 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----RRSQKLRIGRYSQHFVDL 572
+ G +++VG +G+GKST L + GE+ +R L G+ D+
Sbjct: 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI 403
Query: 573 LTMEETPVSYL-------------LRLHPDQEGLSKQEAVRAKLGKFGL-PSHNHLTPIA 618
+ + P + L LR+H G + V L + GL P H P
Sbjct: 404 QFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP-H 462
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM----QSIDALADALDEFTGGVVLVSH 674
+ SGGQ+ R+ P +++ DE + LD+ Q I+ L D +F + +SH
Sbjct: 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522
Query: 675 DSRLISRV 682
D ++ R+
Sbjct: 523 DMAVVERI 530
|
Length = 623 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
+ I+ S + G E+L+ ++ + G+ ++GP+G GKSTLL+L+A
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA 50
|
Length = 248 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 48/254 (18%)
Query: 477 RDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGK 536
R+ F P + P+L++ +S K+ DV + G + I G GAG+
Sbjct: 245 RELEDLFPEPPEEGIGEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGR 298
Query: 537 STLLNLLAGDLSPTEGEV------------RRSQKLRIG-----RYSQHFVDLLTMEETP 579
+ L L G + GE+ R + K I R S+ V +++ E
Sbjct: 299 TELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENI 358
Query: 580 VSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGG--QKARVVFTSIS 634
LR + + ++ + + + + + PI LSGG QK VV
Sbjct: 359 TLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK--VVLARWL 416
Query: 635 MSKPHILLLDEPTNHLDM-------QSIDALADALDEFTG-GVVLVSHDSRLISRVCDDE 686
+ P +L+LDEPT +D+ + I LA G ++++S + + + D
Sbjct: 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-----GKAILMISSELPELLGLSD-- 469
Query: 687 ERSEIWVVENGTVS 700
R I V+ G +
Sbjct: 470 -R--ILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 15/59 (25%), Positives = 35/59 (59%)
Query: 594 SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652
++ + + + + + + + + PI +LSGG + + V + ++ P +L+LDEPT +D+
Sbjct: 378 AELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 8e-04
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
L + S+ I G++ ++G G GKSTLLKLL
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL 512
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 165 DITIDNFSV-AARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
I ++ + + GK L + + G+R LVGP+G GK++LL L
Sbjct: 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNAL 396
|
Length = 588 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
IA+LSGG + + V + P IL+LDEPT +D
Sbjct: 402 AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 9e-04
Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 47/204 (23%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L +VDV I V I G +G+GKS+ LA D EG+ R + L Y++ F+
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSS----LAFDTIYAEGQRRYVESL--SAYARQFLGQ 64
Query: 573 LTMEETPVSYLLRLHP----DQEGLSK---------------------QEAVRAKLG--- 604
M++ V + L P DQ+ S+ + +R +LG
Sbjct: 65 --MDKPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLV 122
Query: 605 KFGLPSHNHLTP---IAKLSGGQKARV-VFTSISMSKPHIL-LLDEPTNHLDMQSIDALA 659
GL +LT LSGG+ R+ + T I +L +LDEP+ L + D L
Sbjct: 123 DVGLG---YLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLI 179
Query: 660 DALDEFT---GGVVLVSHDSRLIS 680
+ L V++V HD I
Sbjct: 180 ETLKRLRDLGNTVLVVEHDEDTIR 203
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
++++N SV+ + +L S+ + GK L+GPNG GKSTL++++
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVV 50
|
Length = 251 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
+ I N S + + S+ I G+ L+GP+G GK+TLL+++A
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52
|
Length = 352 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 294 DAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
D A+ +A K L +G ++++ + SGG R+++A + +P +L LDEP LD
Sbjct: 119 DEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178
Query: 354 RAVLWLEEYLCRWKK---TLVVVSHDRD 378
+ + ++K T+++V+H+ D
Sbjct: 179 EGRKEMMQLFKDYQKAGHTVILVTHNMD 206
|
Length = 287 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 41/201 (20%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLL--AGDLSPT---EGEVRRSQKLRIGR----- 564
D V I +GP+G GKST+L L DL EG V + G+
Sbjct: 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85
Query: 565 YSQHFVDLLTMEETP--------VSYLLRLHPDQEGLSKQ-----------EAVRAKLGK 605
+ ++ ++ + P V++ LRL+ + L + + V+ KL
Sbjct: 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV 145
Query: 606 FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665
GL LSGGQ+ R+ ++P +LLLDEP + LD + + + + E
Sbjct: 146 SGL----------SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195
Query: 666 TGG--VVLVSHDSRLISRVCD 684
+ LV+H+ + RV D
Sbjct: 196 KKDYTIALVTHNMQQAIRVAD 216
|
Length = 261 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 34/207 (16%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
L S+ I + ++GP+G GKST L+ + + ID VE E+ ++
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN----RMNDLIDAARVEGELTFRGKNVYD 110
Query: 241 AVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEK----LQILGSDA 295
A V V LR + + Q +Y+ L+I G D
Sbjct: 111 ADVDP----VALRRRIGMVFQKPNPFP---------------KSIYDNVAYGLKIQGYDG 151
Query: 296 -AEAQASKILAGLGFTKEMQGRPTKS---FSGGWRMRISLARALFVQPTLLLLDEPTNHL 351
+ + + L E++ + S SGG + R+ +ARA+ P ++L+DEP + L
Sbjct: 152 DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211
Query: 352 DLRAVLWLEEYLCRWKK--TLVVVSHD 376
D A +E+ + + T+V+V+H+
Sbjct: 212 DPVATSKIEDLIEELAEEYTVVIVTHN 238
|
Length = 285 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 52/196 (26%)
Query: 165 DITIDNFSV--AARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK-- 220
+I ++N SV A +LK+ S ++ G++ G+VG G GKSTL+ L +R + +
Sbjct: 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILAL-FRFLEAEEGK 64
Query: 221 -NIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASL-QNSTSVDG--EEDGDDAND 276
ID G D S I L LR + + Q+ T G + D ++
Sbjct: 65 IEID---------GIDISTI--------PLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE 107
Query: 277 AGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALF 336
++ E+Y L++ GL + S G R + LARAL
Sbjct: 108 YSDE--EIYGALRVSEG------------GL------------NLSQGQRQLLCLARALL 141
Query: 337 VQPTLLLLDEPTNHLD 352
+P +L+LDE T +D
Sbjct: 142 KRPRVLVLDEATASID 157
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSH 375
SGG R+++A AL T L DEP+ +LD+ L + R KKT +VV H
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
Query: 376 D 376
D
Sbjct: 131 D 131
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVD- 571
++DV + G + + G GAG++ L+ +L G L T G V + R Q +
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 572 --------------LL------TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH 611
+L M T + Y R + +Q+AV + F + +
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP 387
Query: 612 NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
+ I LSGG + +V M++P +L+LDEPT +D
Sbjct: 388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 482 EFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLN 541
P E P + + + + N L ++ V I +G I G +G+GKSTL+N
Sbjct: 597 RKKIEVPAERRPGNGKFLTLKGAREN----NLKNITVSIPLGLFTCITGVSGSGKSTLIN 652
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.001
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 523 GTRVAIVG-PNGAGKSTLLNLLAG 545
G +V I G PN GKS+LLN L G
Sbjct: 215 GLKVVIAGRPN-VGKSSLLNALLG 237
|
Length = 449 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564
G ++G +G GKSTL+N L +L+ GE+ S+KL GR
Sbjct: 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEI--SEKLGRGR 203
|
Length = 301 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
E LK ++ I G+ +VGP+G GKSTLL LL
Sbjct: 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG 52
|
Length = 226 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLK 209
+ ++N + ++L S+ + G+ L+G NG GK+TLLK
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLK 44
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.002
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 190 HGKRYGLVGPNGMGKSTLLKLLAW 213
G+ +VGP G GK+TL + LA
Sbjct: 1 PGEVILIVGPPGSGKTTLARALAR 24
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 496 LQLIEVSFSYPNREDFKL-SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+Q V F Y R+D ++ D++ + G A VG +G GKST+L L+ PTEG++
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
|
Length = 1466 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 27/202 (13%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSP---TEGEV-RRSQKLRI 562
ED L ++++ I AI+GP+G GKST + L +L P T G++ R Q +
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 563 GRYSQH----FVDLLTMEETP--------VSYLLRLHPDQEGLSKQEAVRAKLGKFGL-- 608
YS V ++ + P V+Y ++H ++ + E V L +
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD 155
Query: 609 PSHNHLTPIA-KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALDE 664
+ L A LSGGQ+ R+ +P ++L+DEPT+ LD S ++ L L +
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK 215
Query: 665 -FTGGVVLVSHDSRLISRVCDD 685
++ +++V+H+ + +R+ D
Sbjct: 216 DYS--IIIVTHNMQQAARISDK 235
|
Length = 271 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 29/197 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT---EGE------------VRRS 557
L +D+ + G V + G NGAGKSTL+ +L+G + P +GE +R +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 558 QKLRIGRYSQHFVDLLTMEETPVSYLLRL-----HPDQEGLSKQEAVRAK--LGKFGLPS 610
++ I Q +L + E V+ + L P +RAK L + L +
Sbjct: 76 ERAGIVIIHQ---ELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA 132
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG-GV 669
N P+ GGQ+ V + +L+LDEP++ L + + L D + + GV
Sbjct: 133 DNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 670 --VLVSHDSRLISRVCD 684
V +SH + VCD
Sbjct: 193 ACVYISHKLNEVKAVCD 209
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 304 LAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV---QPTLLLLDEPTNHL---DLRAVL 357
L LG GRP S SGG R+ LA L +PTL +LDEPT L D++A++
Sbjct: 793 LCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI 852
Query: 358 WLEEYLCRWKKTLVVVSHD 376
++ + L T+V++ H+
Sbjct: 853 YVLQSLTHQGHTVVIIEHN 871
|
Length = 1809 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 272 DDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331
++A + E + ++ KLQ L GLG+ K G+P + SGG RI L
Sbjct: 134 EEALEFFENIPKIARKLQTLCD-----------VGLGYIK--LGQPATTLSGGEAQRIKL 180
Query: 332 ARALFVQ---PTLLLLDEPTNHL---DLRAVLWLEEYLCRWKKTLVVVSHDRD 378
A+ L + TL +LDEPT L D++ +L + + L T+VV+ H+ D
Sbjct: 181 AKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 36/179 (20%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQKLRIGRYSQH-FVDLLTMEETPV 580
G + I GPNG GKS+L +L L P G + K ++ Q ++ L T+ + +
Sbjct: 478 GNNLLICGPNGCGKSSLFRILGE-LWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQII 536
Query: 581 SYLLRLHPD------QEGLSKQEAVRAKLGKFGLPSHNHLTPIAK--------------L 620
+PD + GLS ++ + + + LT I + L
Sbjct: 537 ------YPDSSEDMKRRGLSDKDLEQ-------ILDNVQLTHILEREGGWSAVQDWMDVL 583
Query: 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI 679
SGG+K R+ + KP +LDE T+ + + + EF + VSH L
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW 642
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 166 ITIDNFSVA-ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
I +N S A G+E L+ S I G+ L GP+G GKSTLLKL+
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLI 48
|
Length = 223 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
I ID+ VA +L S+ I G+ L+G +G GK+TLL+ +A
Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIA 52
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
I + N + GKE+LK+ S I G+ G++G +G GKS L+ +L
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVL 46
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS----IDALADALDEFTGGVVLVSHD 675
LSGGQK R+ + +P ILLLDE T+ LD S + D D+ ++ ++H
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
Query: 676 SRLISR-----VCDDEERSEIWVVENGT 698
I R V ++ +R+ +V +GT
Sbjct: 1419 IASIKRSDKIVVFNNPDRTGSFVQAHGT 1446
|
Length = 1466 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 159 ADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
D+ I F+ L++ + + G+ G+ GP G GKSTLL L+
Sbjct: 309 EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361
|
Length = 569 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
+ I N + E+LK ++ I+ G+ + ++GPNG GKSTL K++A
Sbjct: 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA 54
|
Length = 252 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVL--WLEEYLCRWKKTLVVVSHD 376
SGG + R+S+ARA++ + + D+P + LD R V +++ L KT V+V++
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQ 799
Query: 377 RDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNK--KFEIY---EKQVKAAK 431
FL+ V II +H+ + G +++ + +K M K E Y + + +
Sbjct: 800 LHFLSQV-DRIILVHEGMIK-EEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQ 857
Query: 432 RSGNRVQQEKVKDRAKSAAAKEASKNKAKGK 462
S V + K +++K K +GK
Sbjct: 858 TSSKPVANGNANNLKKDSSSK---KKSKEGK 885
|
Length = 1622 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 57/324 (17%), Positives = 114/324 (35%), Gaps = 27/324 (8%)
Query: 76 DDEDDYALDEEIDAK-KQLHRQQKDESKQLEISVTDKELKKREKKDMLAAHHAEQAKKEA 134
+ ++ L + ++L + K+ K+L+ + ++ + E L AE +EA
Sbjct: 573 ELLEELRLLRTRKEELEELRERLKELKKKLK-ELEERLSQLEELLQSLELSEAENELEEA 631
Query: 135 LRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRY 194
+ + E ++ A ++++ + A + L+ ++
Sbjct: 632 EEELESE----LEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEK- 686
Query: 195 GLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLRE 254
L+ L + K + + E + ++ ++ + E+L K E
Sbjct: 687 ---LEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALE 743
Query: 255 EVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM- 313
+ L+ G N + AE E L L + + + I +
Sbjct: 744 LLEELREKLGKAGLRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGNGGLVVV 803
Query: 314 -----QGRPTKSFSGGWRMRISLARAL----FVQPT----LLLLDEPTNHLD---LRAVL 357
+ RP K+ SGG R SLA L +Q LL LDEP LD L +
Sbjct: 804 VYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLA 863
Query: 358 WLEEYLCRWKKTLVVVSHDRDFLN 381
+ E L + ++++SH +
Sbjct: 864 EILEELLSDGRQIIIISHVEELKE 887
|
Length = 908 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 654
+KLSGGQK R+ + P IL+LDE T+ LD +S
Sbjct: 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614
|
Length = 1466 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA 355
A+ A L +G R SGG + R+++A L +QP +L+ DEPT LD +
Sbjct: 152 AKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKG 211
Query: 356 VLWLEEYLCRWK---KTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ + + K KT+ V++H + + V E+I + K+
Sbjct: 212 EHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254
|
Length = 320 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 723 | |||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-90 Score=776.58 Aligned_cols=518 Identities=41% Similarity=0.654 Sum_probs=404.4
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE------EEEEeeeeecCC-Ch
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI------DVLLVEQEVVGD-DR 236 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~------~i~~~~q~~~~~-~~ 236 (723)
.+|+++|++++|+++++|+|+||+|.+|++|||||+||||||||||+|+|...|..|++ .+.+..|+.... ..
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 46999999999999999999999999999999999999999999999999987777664 467777776543 34
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCC
Q 048654 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGR 316 (723)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 316 (723)
+.+..++....+...+..+...+.... +.. ....+..+...+..+..+..++++..+|..||++.. ++
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~ 149 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALL-------ADP---DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DR 149 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhc-------ccc---hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cC
Confidence 666666555544444444333221100 000 111222233333344457788999999999999854 79
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
++.+||||||+||+||+||+.+|+||||||||||||..++.||.++|.++..|||+||||++|++++|++|+.++.|++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 99999999999999999999999999999999999999999999999999779999999999999999999999999999
Q ss_pred EecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccc
Q 048654 397 FYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKW 476 (723)
Q Consensus 397 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (723)
.|.|+|+.|.+.++.+.....+.++.+++++++......+......+. + +...+.+...++..... ...+ ..
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~--k----~a~sr~k~l~k~~~~~~-~~~~-~~ 301 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKA--K----KAKSRIKRLEKLEARLA-EERP-VE 301 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--H----HHHHHHHHHHHHHhhhh-hccc-cc
Confidence 999999999998887776666666655555554432211110000000 0 00000011111111000 0001 00
Q ss_pred cccceeeecCCCC-CCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEE
Q 048654 477 RDYSVEFHFPEPT-ELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555 (723)
Q Consensus 477 ~~~~~~~~~~~~~-~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~ 555 (723)
......+.|+.+. ..+.++++++|+++.|++. ..+++++||.|.+|++||||||||+|||||||+|+|.+.|.+|.|.
T Consensus 302 ~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~ 380 (530)
T COG0488 302 EGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380 (530)
T ss_pred ccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE
Confidence 1122334555544 3568899999999999764 4689999999999999999999999999999999999999999999
Q ss_pred ECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 556 ~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
+....++||+.|+..... ...+++.++...++.. ....++.+|++|++......+++..||||||.||+||++++
T Consensus 381 ~g~~v~igyf~Q~~~~l~-~~~t~~d~l~~~~~~~----~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 381 VGETVKIGYFDQHRDELD-PDKTVLEELSEGFPDG----DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred eCCceEEEEEEehhhhcC-ccCcHHHHHHhhCccc----cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhc
Confidence 998899999999874433 4456777765555432 25779999999999988888999999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~~ 713 (723)
.+|+||||||||||||+.++++|.++|.+|.+|||+||||.+|+..+| +++|++++ .+..|.|++++|.+..
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va-----~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVA-----TRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc-----ceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999 49999998 8888999999997753
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-90 Score=723.74 Aligned_cols=539 Identities=52% Similarity=0.879 Sum_probs=466.5
Q ss_pred cccCCccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH
Q 048654 158 DADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 158 ~~~~~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~ 237 (723)
++..+.++|.|+|++++-.|+.+|.|.||.|-.|.+||||||||-||||||+.|+-.-...|.++.+.+++|++..++.+
T Consensus 257 A~lEna~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 257 AQLENAMDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTS 336 (807)
T ss_pred HHHhhcccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcH
Confidence 34567789999999999999999999999999999999999999999999999998777788999999999999988888
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
++..++..+.....+..+...++..... + .....+++..++..+..++.+.++++++.+|..|||+..+.++|
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~-----G--d~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rP 409 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEE-----G--DTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERP 409 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHc-----C--chHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCC
Confidence 8888877766655555544433221100 1 23556778888888888999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
...+|||||+||+|||||+.+|.+|+|||||||||..++.||-+||+.|++|++|||||-.|+.++|+.||+|++.++++
T Consensus 410 t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhh--HHHHHHHHHHHHHHHhhhhcc-CcccCCCCCCCCCc
Q 048654 398 YRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQ--EKVKDRAKSAAAKEASKNKAK-GKVDEDEPLPEAPK 474 (723)
Q Consensus 398 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 474 (723)
|+|+|.-|..+|.+.+.++.+.|+.++++++.++..|....+ ..++... .+.+.+.+.+ ...+++..+++...
T Consensus 490 YrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~l----trKq~K~~~Knq~dded~gapELL~ 565 (807)
T KOG0066|consen 490 YRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQL----TRKQKKGGKKNQNDDEDAGAPELLQ 565 (807)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH----HHHHHhccccccCccccccCHHHHh
Confidence 999999999999999999999999999999998877753322 1122111 1111111111 12223333333344
Q ss_pred cccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 475 KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
+..+|.+.|.||.|+...+|+|-+.+|+|.|++. .++|.+++|-|....+||||||||.||||||++|.|-+.|+.|+.
T Consensus 566 RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~ 644 (807)
T KOG0066|consen 566 RPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL 644 (807)
T ss_pred CchheEEEEecCCCCCCCCCeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchh
Confidence 5567899999999999999999999999999875 578999999999999999999999999999999999999999999
Q ss_pred EECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 555 RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 555 ~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral 634 (723)
+.+.+.+||++.|+....+...+++++|+.+.|.. ..+.++..|..|||..+.+.-.+..|||||+.||+||-..
T Consensus 645 RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl-----pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 645 RKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNL-----PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred hccceeeeechhhhhHHhhccccCHHHHHHHhcCC-----ChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHh
Confidence 99999999999999988999999999998776643 3567899999999998887778899999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHHHH
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQ 714 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~~~ 714 (723)
+..|+|||||||||+||++++.+|.++|++|.++|||||||..++.+.- ..+||+++..|..++|++++|+.+++
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~-----C~LwVvE~Q~i~eIdGdFeDYkkEVL 794 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETD-----CNLWVVENQGIDEIDGDFEDYKKEVL 794 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecC-----ceEEEEccCChhhccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987652 47999999999999999999999988
Q ss_pred HHHH
Q 048654 715 REIK 718 (723)
Q Consensus 715 ~~~~ 718 (723)
..+-
T Consensus 795 daLG 798 (807)
T KOG0066|consen 795 DALG 798 (807)
T ss_pred HHHH
Confidence 7764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-85 Score=767.44 Aligned_cols=532 Identities=47% Similarity=0.823 Sum_probs=395.2
Q ss_pred cCCccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC-CCCCcEEEEEeeeeecCCChHH
Q 048654 160 DANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI-PVPKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 160 ~~~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~-~~~~~~~i~~~~q~~~~~~~~~ 238 (723)
.....+|+++||+++|+++++|+|+||+|.+|+++||||+|||||||||++|+|... ..|..+.|.+++|++.+.+.+.
T Consensus 172 ~~~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~ 251 (718)
T PLN03073 172 GPAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTA 251 (718)
T ss_pred CCCceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCH
Confidence 345678999999999999999999999999999999999999999999999998642 2467788999898866554444
Q ss_pred HHHHHHhhHHHHH-HHHHHHhhhcC------cCCC----CCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 048654 239 IQAVVSAHEELVK-LREEVASLQNS------TSVD----GEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL 307 (723)
Q Consensus 239 ~~~~~~~~~~~~~-l~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l 307 (723)
.+.+.....+... +...+.++.+. .... .............++..+++.+...+.+..++++..+|..+
T Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l 331 (718)
T PLN03073 252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL 331 (718)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 4333222222111 11222222110 0000 00001112233455666667776667778889999999999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEE
Q 048654 308 GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEI 387 (723)
Q Consensus 308 gl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~I 387 (723)
||.....++++.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 99755567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCC
Q 048654 388 IHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDE 467 (723)
Q Consensus 388 i~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (723)
++|++|++..|.|+|+.|......++....+.++.++++.+..+....+ ....+.... ......+...++....
T Consensus 412 ~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~-----~~~~a~~~~-~~~s~~k~l~~~~~~~ 485 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDK-----FRYNAKRAS-LVQSRIKALDRLGHVD 485 (718)
T ss_pred EEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhH-HHhhcchHHHHHhhhh
Confidence 9999999988999999998776666655555666555555443321110 000000000 0000000000110000
Q ss_pred CCCCCCccccccceeeecCCCC-CCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 468 PLPEAPKKWRDYSVEFHFPEPT-ELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.... .....+.++.+. ..+.++|+++||++.|++. ..+|+||||+|.+|++++|+|||||||||||++|+|+
T Consensus 486 ~~~~------~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl 558 (718)
T PLN03073 486 AVVN------DPDYKFEFPTPDDRPGPPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE 558 (718)
T ss_pred cccc------CCCceeecCCCccCCCCceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 0000 011223344321 2245799999999999643 3589999999999999999999999999999999999
Q ss_pred CCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Q 048654 547 LSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA 626 (723)
Q Consensus 547 ~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkq 626 (723)
++|++|+|.+.++.+++|++|++...+.+..+....+...++.. ..+.++.+|+.|||......+++.+|||||||
T Consensus 559 l~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkq 634 (718)
T PLN03073 559 LQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 634 (718)
T ss_pred CCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHH
Confidence 99999999998878899999986444444444332222222211 24568899999999754445678999999999
Q ss_pred HHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 627 RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 627 Rv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
||+|||+|+.+|+||||||||+|||+.++..+.+.|.++.+|||+||||++++..+|| +||+|++|+|+.+.|++
T Consensus 635 RvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~d-----rv~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 635 RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVD-----ELWVVSEGKVTPFHGTF 709 (718)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC-----EEEEEECCEEEEeCCCH
Confidence 9999999999999999999999999999999999999988899999999999999995 99999999998788999
Q ss_pred HHHHHHH
Q 048654 707 EEYKEDL 713 (723)
Q Consensus 707 ~~~~~~~ 713 (723)
++|++.+
T Consensus 710 ~~~~~~~ 716 (718)
T PLN03073 710 HDYKKTL 716 (718)
T ss_pred HHHHHHh
Confidence 9887654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-85 Score=763.00 Aligned_cols=511 Identities=37% Similarity=0.642 Sum_probs=372.5
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEE------EEEeeeeecCCChHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID------VLLVEQEVVGDDRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~------i~~~~q~~~~~~~~~ 238 (723)
+|+++||+++|+++++|+||||+|.+|+++|||||||||||||||+|+|+..|..|.+. +.|+.|.......+.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 48899999999999999999999999999999999999999999999998766544432 122333221111223
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
+..+.........+...+....... . ...+......+...+.+....++..+|+.|||.....++++
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 147 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERN----------D---GHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV 147 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccC----------C---HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence 3322211111111111111110000 0 00111111111122233456789999999999644457999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|++|++|++..|
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999989
Q ss_pred cCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHH-hhhhccCcccCCCCCCCCCcccc
Q 048654 399 RGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEA-SKNKAKGKVDEDEPLPEAPKKWR 477 (723)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 477 (723)
.|+|+.|......+.....+.++.+++.+++......+.. ..+.. .+.+ .+.+...++....+ +. .
T Consensus 228 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~-----~~a~~--~~~a~~r~~~l~~~~~~~~----~~--~ 294 (638)
T PRK10636 228 TGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFR-----AKATK--AKQAQSRIKMLERMELIAP----AH--V 294 (638)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhh--HHHHHHHHHHHHHhhcccc----cc--c
Confidence 9999999876665555555555555555544322111000 00000 0000 00000011110000 00 0
Q ss_pred ccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC
Q 048654 478 DYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS 557 (723)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~ 557 (723)
.....+.|+.+...+.++|+++||++.|+++ .+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~ 372 (638)
T PRK10636 295 DNPFHFSFRAPESLPNPLLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372 (638)
T ss_pred CCceeEecCCCccCCCceEEEEeeEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 1234456665544567899999999999753 58999999999999999999999999999999999999999999987
Q ss_pred CceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 558 QKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 558 ~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
....+||++|+....+....++...+....+. .....++.+|..|++......+++..|||||||||+||++|+.+
T Consensus 373 ~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 373 KGIKLGYFAQHQLEFLRADESPLQHLARLAPQ----ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred CCEEEEEecCcchhhCCccchHHHHHHHhCch----hhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 66789999996433333333443332222111 13456889999999975444578899999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
|+||||||||||||+.++..|.++|.++.+|||+||||++++..+|| +|++|++|+|+.+.|++++|.+.
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d-----~i~~l~~G~i~~~~g~~~~~~~~ 518 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTD-----DLYLVHDGKVEPFDGDLEDYQQW 518 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCC-----EEEEEECCEEEEcCCCHHHHHHH
Confidence 99999999999999999999999999998899999999999999995 99999999998789999998543
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-86 Score=713.59 Aligned_cols=538 Identities=44% Similarity=0.795 Sum_probs=442.5
Q ss_pred CCccccCCccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCC
Q 048654 155 GQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234 (723)
Q Consensus 155 ~~~~~~~~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~ 234 (723)
|.......+.++.+.|++++|.++.+++|+.|++.+|+.|||+|+|||||||+|++|+|...|.|.+..+++..+++...
T Consensus 65 g~l~s~~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps 144 (614)
T KOG0927|consen 65 GNLFSHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPS 144 (614)
T ss_pred cccccCcccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCc
Confidence 43344556678999999999999999999999999999999999999999999999999999999999998888877655
Q ss_pred ChHHHHHHH-HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccc
Q 048654 235 DRSAIQAVV-SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM 313 (723)
Q Consensus 235 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~ 313 (723)
..+.+..++ ....+..++....-.+.... .....+.+...++++..++.+..+.++..+|..+||...+
T Consensus 145 ~~~av~~v~~~~~~e~~rle~~~E~l~~~~----------d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 145 EKQAVQAVVMETDHERKRLEYLAEDLAQAC----------DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhhc----------cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 555555555 22233333322222221110 0011234455677777778888899999999999999888
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCc-EEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK-TLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~-TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
.++.+..||||||+|++|||+|+.+|++|||||||||||+.++.||.++|.++.. ++|+++|+.+|++.+|++||+|++
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 8999999999999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred CEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhH--HHHHHHHHHHHHHHhhhhccCcccCCCCCC
Q 048654 393 QKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQE--KVKDRAKSAAAKEASKNKAKGKVDEDEPLP 470 (723)
Q Consensus 393 G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (723)
+++++|.|||+.|...+.+......+.|+.+++++...+......... ....++. .+.+-..++....- .
T Consensus 295 kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~-------s~~K~~~km~~~gL-~ 366 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQ-------SKEKTLDKMEADGL-T 366 (614)
T ss_pred cceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHh-------hhhhhHHHHhhccc-c
Confidence 999999999999998888888888888888888877655332211111 1111111 01111112221110 1
Q ss_pred CCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 471 EAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
+.+ ..+....|.|+.-...++|++.+.||+|+|.+.. .++++++|.|..++++++|||||+|||||||+|+|.+.|+
T Consensus 367 ek~--~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~ 443 (614)
T KOG0927|consen 367 EKV--VGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT 443 (614)
T ss_pred ccc--cCCceEEEEcccccCCCCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc
Confidence 111 1234567778776666789999999999998764 7899999999999999999999999999999999999999
Q ss_pred cceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHH
Q 048654 551 EGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 551 ~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~l 630 (723)
.|.|..+...+++++.|+..+.+.+..+.+++++..+++. ...+.++.+|++|||.+.....|+.+||+|||.||+|
T Consensus 444 ~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~---~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 444 IGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE---KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLF 520 (614)
T ss_pred cccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc---chHHHHHHHHHHhCCCccccccchhhcccccchhHHH
Confidence 9999998888899999998888888888888887777641 2567899999999999888889999999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+.++.+|+||||||||||||+.+++++.++|++|.++||+||||+.++.++++ +||++.+|.+..++|++..|+
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVae-----Ei~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAE-----EIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHH-----HhHhhccCceeecCccHHHHH
Confidence 999999999999999999999999999999999999999999999999999994 999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 048654 711 EDLQREIKAEV 721 (723)
Q Consensus 711 ~~~~~~~~~~~ 721 (723)
+.+.+.+..|.
T Consensus 596 ~~l~~~~~~e~ 606 (614)
T KOG0927|consen 596 EHLKKKRAKED 606 (614)
T ss_pred HHHHHHHhhhh
Confidence 98887776654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-82 Score=738.09 Aligned_cols=517 Identities=27% Similarity=0.470 Sum_probs=363.9
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeee--------eecC-C
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ--------EVVG-D 234 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q--------~~~~-~ 234 (723)
.+|+++||+++|+++++|+||||+|++|+++||||||||||||||++|+|+..|.. |.|.+.+. .... .
T Consensus 2 ~~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~--G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD--GRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred cEEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC--eEEEeCCCCEEEEeccCCCCCC
Confidence 36999999999999999999999999999999999999999999999999876544 44443321 1100 0
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc
Q 048654 235 DRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
.......+................+...... .. .......+..+...+...+......++.++|+.|||. .
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~ 150 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVET----DP--SEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---P 150 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhcc----Cc--hHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---C
Confidence 1111221110000000000000001000000 00 0000111111111122222234567889999999996 2
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++++.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|.+++.|||+||||++++..+||+|++|++|+
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~ 230 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGK 230 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 68999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred EEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCc
Q 048654 395 LHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPK 474 (723)
Q Consensus 395 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (723)
++.|.|+|+.|...++.+.......++.+++.+++......+. .+ +... +...+.+...++... . .. +.
T Consensus 231 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--a~~~--~~~~r~~~~~~~~~~-~-~~-~~ 299 (635)
T PRK11147 231 LVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQG----IK--ARRT--RNEGRVRALKALRRE-R-SE-RR 299 (635)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hh--hhhh--hHHHHHHHHHHhhhh-h-cc-cc
Confidence 9889999999988766655444444444444443322111100 00 0000 000000000011000 0 00 00
Q ss_pred cccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 475 KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
. ......+.|+.+...+.++|+++||++.|+++ .+|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|
T Consensus 300 ~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i 376 (635)
T PRK11147 300 E-VMGTAKMQVEEASRSGKIVFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376 (635)
T ss_pred c-cCCceeEEeCCCCCCCCceEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 0 01123455554444467799999999999753 58999999999999999999999999999999999999999999
Q ss_pred EECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 555 RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 555 ~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral 634 (723)
.+.....+||++|+.. .+....++...+...............++.+|+.|++......+++.+|||||||||+||++|
T Consensus 377 ~~~~~~~i~y~~q~~~-~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 377 HCGTKLEVAYFDQHRA-ELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLF 455 (635)
T ss_pred EECCCcEEEEEeCccc-ccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHH
Confidence 9865567999999642 122222333332221111000012346788999999965444578899999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEE-CCeEEecCCCHHHHHH
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVE-NGTVSRFPGTFEEYKE 711 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~-~G~i~~~~g~~~~~~~ 711 (723)
+.+|+||||||||||||+.++..|.++|+++++|||+||||++++..+|| +||+|+ +|+|+.|.|++++|.+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d-----~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVT-----ECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcC-----EEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999998899999999999999995 999998 8999999999999965
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-84 Score=696.59 Aligned_cols=500 Identities=47% Similarity=0.761 Sum_probs=401.6
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
...+|.+.+++..||++.+|++.++++..|.+|||||+||+|||||||+|+. +++++..++|++.+........
T Consensus 77 ~~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 77 KSKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQS 150 (582)
T ss_pred cccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhh
Confidence 3568999999999999999999999999999999999999999999999984 3445555666766655444333
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCch-HHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSD-AAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+...+.....+... .-. +... ...+.+.++|..|||++++..+++.+
T Consensus 151 ~l~~D~~~~dfl~~-------------------------------e~~-l~~~~~l~ei~~~~L~glGFt~emq~~pt~s 198 (582)
T KOG0062|consen 151 VLESDTERLDFLAE-------------------------------EKE-LLAGLTLEEIYDKILAGLGFTPEMQLQPTKS 198 (582)
T ss_pred hhhccHHHHHHHHh-------------------------------hhh-hhccchHHHHHHHHHHhCCCCHHHHhccccc
Confidence 33222211111100 000 0000 11222333899999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||||||+|++|||||+.+|||||||||||+||..++.||.++|..|+.|+|+||||..|++++|+.||++++-++.+|.|
T Consensus 199 lSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkG 278 (582)
T KOG0062|consen 199 LSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKG 278 (582)
T ss_pred cCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccccc
Q 048654 401 NFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYS 480 (723)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (723)
||+.|.....++...++..|+.+.+.....+.+.. +.+..+..+. ..+.+.+-.+++ +.......+..
T Consensus 279 N~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid-----~FrYna~ra~-svqSRIk~L~kl------~~lk~~~~~~~ 346 (582)
T KOG0062|consen 279 NYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFID-----KFRYNAARAS-SVQSRIKMLGKL------PALKSTLIEVL 346 (582)
T ss_pred cHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHH-----HhccCcccch-hHHHHHHHhccC------CCCCccceecc
Confidence 99999998888887777777765554443322111 0001010000 000011111111 11111122344
Q ss_pred eeeecCCC-CCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc
Q 048654 481 VEFHFPEP-TELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK 559 (723)
Q Consensus 481 ~~~~~~~~-~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~ 559 (723)
+.|.||++ ....+|+|++.+|+|.|+....+.+.++++.++.-++++++|+||+||||+++++.|.+.|..|.+.++++
T Consensus 347 ~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r 426 (582)
T KOG0062|consen 347 IGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR 426 (582)
T ss_pred cceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc
Confidence 67788874 34568999999999999865436789999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 560 LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 560 ~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
.+++|++|+..+.+....+.+.++...++.. .++.++..|+.|||++.+..+++.+||||||-||+||.+.+.+|+
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence 9999999998888777767777776666654 567899999999999988888899999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHHHHHHHHh
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKA 719 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~~~~~~~~ 719 (723)
+|||||||||||..+..+|.++|+.|+++|||||||.+|+..+|+ ++|++++|+|+.+.|...+|+.-...++++
T Consensus 503 lLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~-----E~Wvve~g~vt~ieg~~~~yKkl~~~e~~~ 577 (582)
T KOG0062|consen 503 LLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCK-----ELWVVEDGKVTPIEGGIDKYKKLLGAELRA 577 (582)
T ss_pred EEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCc-----eeEEEcCCcEEeeeccHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999994 999999999999999999999888877765
Q ss_pred h
Q 048654 720 E 720 (723)
Q Consensus 720 ~ 720 (723)
.
T Consensus 578 ~ 578 (582)
T KOG0062|consen 578 K 578 (582)
T ss_pred h
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-80 Score=707.92 Aligned_cols=519 Identities=31% Similarity=0.554 Sum_probs=358.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEE------EEEeeeeecC-CChH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID------VLLVEQEVVG-DDRS 237 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~------i~~~~q~~~~-~~~~ 237 (723)
+|+++|++++|+++++|+|+||+|.+|++++|+|||||||||||++|+|+..|..|.+. +.++.|+... ...+
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 48899999999999999999999999999999999999999999999998766555432 2333343221 1223
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
..+++................+...... .... ...+......+..........++.++|+.+|+.....+++
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEM-----SEED---GMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccccc-----ccch---HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 3333321100000000000000000000 0000 0111111111222222334567889999999974344578
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|.+.+.|||+||||++++..+||+|++|++|+++.
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 89999999999999999999999999999999999999999999999888999999999999999999999999999977
Q ss_pred ecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCcccc
Q 048654 398 YRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWR 477 (723)
Q Consensus 398 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (723)
+.|++++|............+.++.++++++.......+..... ...... ... .+........ ... +....
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~--~~~~~~~~~~-~~~--~~~~~ 303 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA--SKAKQA--TSR--AKQIDKIKLE-EVK--PSSRQ 303 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhhHHH--HHH--HHHHhhcccc-ccC--Ccccc
Confidence 88999998765554433333333334433332221100000000 000000 000 0000000000 000 00000
Q ss_pred ccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC
Q 048654 478 DYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS 557 (723)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~ 557 (723)
. ....++......+++|+++||++.|+++ .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.
T Consensus 304 ~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~ 379 (530)
T PRK15064 304 N--PFIRFEQDKKLHRNALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS 379 (530)
T ss_pred C--ceeeCCCCCCCCCceEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 0 0112222222245799999999999753 48999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 558 QKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 558 ~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
++..++|++|.....+....+....+. .+... ......++.+|+.+|+.....++++.+|||||||||+|||+|+.+
T Consensus 380 ~~~~i~~~~q~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 456 (530)
T PRK15064 380 ENANIGYYAQDHAYDFENDLTLFDWMS-QWRQE--GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQK 456 (530)
T ss_pred CceEEEEEcccccccCCCCCcHHHHHH-HhccC--CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcC
Confidence 888899999975321211122222221 11111 112456788999999953334577899999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
|+||||||||+|||+.++..|.+.|+++++|||+||||++++..+|| +|++|++|+++.+.|++.++.+.
T Consensus 457 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d-----~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 457 PNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLAT-----RIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999998899999999999999995 99999999997678888877543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=700.66 Aligned_cols=520 Identities=27% Similarity=0.411 Sum_probs=359.9
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEE------EEEeeeeecCC-C
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID------VLLVEQEVVGD-D 235 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~------i~~~~q~~~~~-~ 235 (723)
++|+++||+++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+..|..|.+. +.|+.|+.... .
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 3699999999998 78999999999999999999999999999999999998777665542 44555554322 2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHhhh-cCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc
Q 048654 236 RSAIQAVVSAHEELVKLREEVASLQ-NSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
.+..+++................+. ..... .............+.+.+...+.+....++..+++.+|+. . .
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~ 157 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEP-----DADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-W 157 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccC-----chhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-c
Confidence 2444433211000000000000000 00000 0000000111112222223333334467789999999995 3 4
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++++.+|||||||||+|||||+.+|+|||||||||+||+.++.+|.++|++++.|||+||||++++..+||+|++|++|+
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 78999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCc
Q 048654 395 LHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPK 474 (723)
Q Consensus 395 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (723)
++.|.|+++.|..............++..++++.+.......... .. .. .. . ...+...+.... .....+
T Consensus 238 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~-~---~~~~~~~~~~~~-~~~~~~- 307 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPK--AR-QA-KS-K---ARLARYEELLSE-EYQKRN- 307 (556)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hh-HH-HH-H---HHHHHHHHhhcc-cccccC-
Confidence 987899999987655433333222232222222221111000000 00 00 00 0 000000000000 000000
Q ss_pred cccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 475 KWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
....+.++.......++|+++||++.|+++ .+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|
T Consensus 308 ----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i 381 (556)
T PRK11819 308 ----ETNEIFIPPGPRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381 (556)
T ss_pred ----CCceeecCCCCCCCCeEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 001122232222245799999999999753 58999999999999999999999999999999999999999999
Q ss_pred EECCceeEEEEccccccccCccccHHHHHHhhCCCCCCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 555 RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 555 ~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
.+.+...+||++|... .+....++.+.+.... ...+. .....++.+|+.||+.....++++.+|||||||||+|||+
T Consensus 382 ~~~~~~~i~~v~q~~~-~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 382 KIGETVKLAYVDQSRD-ALDPNKTVWEEISGGL-DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EECCceEEEEEeCchh-hcCCCCCHHHHHHhhc-ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 9866667999999741 1111223332221111 00010 1123456789999996433356789999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEEC-CeEEecCCCHHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVEN-GTVSRFPGTFEEYKED 712 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~-G~i~~~~g~~~~~~~~ 712 (723)
|+.+|+||||||||+|||+.++..|.++|.++.+|||+||||++++..+|| +|++|++ |++..+.|++++|.+.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d-----~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIAT-----HILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCC-----EEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999999998899999999999999995 9999986 8888889999988765
Q ss_pred H
Q 048654 713 L 713 (723)
Q Consensus 713 ~ 713 (723)
.
T Consensus 535 ~ 535 (556)
T PRK11819 535 K 535 (556)
T ss_pred H
Confidence 4
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-78 Score=695.64 Aligned_cols=520 Identities=28% Similarity=0.407 Sum_probs=360.3
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEE------EEEeeeeecC-CCh
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID------VLLVEQEVVG-DDR 236 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~------i~~~~q~~~~-~~~ 236 (723)
+|+++||+++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+..|..|.+. |.|+.|.+.. ...
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCC
Confidence 689999999998 78899999999999999999999999999999999998777665542 4455555432 223
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccC
Q 048654 237 SAIQAVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
+..+++.............+... ...... ..+..........+.+.+..++.+....++.++++.+|+. . .+
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~ 156 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEP-----DADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-P-WD 156 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccC-----chhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-c-cc
Confidence 44444321100000000000000 000000 0000000001112222333344444556788999999995 3 47
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+++.+|||||||||+|||||+.+|+|||||||||+||+.++.+|.++|++++.|||+||||++++..+||+|++|++|++
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999999888999999999999999999999999998
Q ss_pred EEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCcc
Q 048654 396 HFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKK 475 (723)
Q Consensus 396 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (723)
+.+.|++++|.+............++.+++++.+........ ... ..+.... . .....+.... .....+
T Consensus 237 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~-~----~~~~~~~~~~-~~~~~~-- 305 (552)
T TIGR03719 237 IPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSS--PKA-RQAKSKA-R----LARYEELLSQ-EFQKRN-- 305 (552)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhh-HHHHHHH-H----HHHHHhhhhh-cccccC--
Confidence 878899999876554333333333333333332211100000 000 0000000 0 0000000000 000000
Q ss_pred ccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEE
Q 048654 476 WRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555 (723)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~ 555 (723)
....+.++.+.....++|+++|+++.|+++ .+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|+
T Consensus 306 ---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~ 380 (552)
T TIGR03719 306 ---ETAEIYIPPGPRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380 (552)
T ss_pred ---CCceeecCCCCCCCCeEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence 011122232222246799999999999753 589999999999999999999999999999999999999999999
Q ss_pred ECCceeEEEEccccccccCccccHHHHHHhhCCCCCCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 556 ~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral 634 (723)
+.+...++|++|.... +....++...+..... ..+. .....++.+|+.+||.....++++.+|||||||||+|||+|
T Consensus 381 ~~~~~~i~~v~q~~~~-~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 381 IGETVKLAYVDQSRDA-LDPNKTVWEEISGGLD-IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred ECCceEEEEEeCCccc-cCCCCcHHHHHHhhcc-ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 8666679999997421 1111233332221111 0011 11234667899999964434567899999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEEC-CeEEecCCCHHHHHHHH
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVEN-GTVSRFPGTFEEYKEDL 713 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~-G~i~~~~g~~~~~~~~~ 713 (723)
+.+|+||||||||+|||+.++..|.++|.++.++||+||||++++..+|| +|++|++ |++..+.|++++|.+..
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d-----~i~~l~~~~~~~~~~g~~~~~~~~~ 533 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIAT-----HILAFEGDSHVEWFEGNYSEYEEDK 533 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCC-----EEEEEECCCeEEEeCCCHHHHHHHH
Confidence 99999999999999999999999999999998899999999999999995 9999987 68887899998887654
Q ss_pred H
Q 048654 714 Q 714 (723)
Q Consensus 714 ~ 714 (723)
.
T Consensus 534 ~ 534 (552)
T TIGR03719 534 K 534 (552)
T ss_pred H
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-78 Score=668.50 Aligned_cols=473 Identities=24% Similarity=0.345 Sum_probs=353.3
Q ss_pred ceEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC--CcEEEEEeeeeecCCChHH
Q 048654 165 DITIDNFSVAARGK----ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP--KNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~~----~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~--~~~~i~~~~q~~~~~~~~~ 238 (723)
.|+++||++.|... ++++||||+|.+||++||||.|||||||++++|.|+..+.+ ..|+|.|.++++.+.....
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 69999999998532 69999999999999999999999999999999999865432 3688988887665544332
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc-CCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ-GRP 317 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~-~~~ 317 (723)
...+ ....++++.+.... ...+...++..+.+.+........++..+++.++|+.+||++... +++
T Consensus 85 ~r~~---------rg~~Ia~i~Q~p~~----slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~y 151 (539)
T COG1123 85 MRKL---------RGKRIAMIFQDPMT----SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRY 151 (539)
T ss_pred HHHh---------ccccEEEEecCchh----hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccC
Confidence 2111 11223333221111 012234566666665544333346778899999999999986543 369
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+++|||||||||+||+||+++|+|||+||||.+||+..+.+|.++|+++ +.++|+||||+..+.++||||+||++|
T Consensus 152 PheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G 231 (539)
T COG1123 152 PHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231 (539)
T ss_pred CcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECC
Confidence 9999999999999999999999999999999999999999999998754 689999999999999999999999999
Q ss_pred EEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCC
Q 048654 394 KLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAP 473 (723)
Q Consensus 394 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (723)
+++.. |+.+++.... ...|.+.+-.. .|
T Consensus 232 ~iVE~-G~~~~i~~~p----------~hpYT~~Ll~a-----------------------------------------~p 259 (539)
T COG1123 232 EIVET-GPTEEILSNP----------QHPYTRGLLAA-----------------------------------------VP 259 (539)
T ss_pred EEEEe-cCHHHHHhcc----------CCcccHHHHhh-----------------------------------------CC
Confidence 99864 7776653311 01111111000 00
Q ss_pred ccccccceeeecCCCCCCCCCeEEEEEEEEEcCCC---------cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 474 KKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNR---------EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~---------~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
..............+ ....|+++++||++.|..+ ...+++||||+|.+||++||||++|||||||.|+|+
T Consensus 260 ~~~~~~~~~~~~~~~-~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~ 338 (539)
T COG1123 260 RLGDEKIIRLPRRGP-LRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILA 338 (539)
T ss_pred Ccccccccccccccc-cccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHh
Confidence 000000000000000 1157899999999999741 235799999999999999999999999999999999
Q ss_pred cCCCCCcceEEECCce-------------eEEEEccccccccCccccHHHHH---HhhCCCCCCCcHHHHHHHHHHhCCC
Q 048654 545 GDLSPTEGEVRRSQKL-------------RIGRYSQHFVDLLTMEETPVSYL---LRLHPDQEGLSKQEAVRAKLGKFGL 608 (723)
Q Consensus 545 Gl~~p~~G~I~~~~~~-------------~ig~~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~gl 608 (723)
|+++|++|.|.+.+.. ++-+++|++...+....++...+ +..+.........+++.++|+.+||
T Consensus 339 gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL 418 (539)
T COG1123 339 GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL 418 (539)
T ss_pred CCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCC
Confidence 9999999999987632 46678888655554444432222 2222211111233568889999999
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcC
Q 048654 609 PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 609 ~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d 684 (723)
+.....+.+.+|||||||||+|||||+.+|+|||+||||+.||+..+..+.++|+++ +.|.|+||||+.++..+||
T Consensus 419 ~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~d 498 (539)
T COG1123 419 PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIAD 498 (539)
T ss_pred CHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCc
Confidence 875445667999999999999999999999999999999999999999999998776 4699999999999999995
Q ss_pred cCCCcEEEEEECCeEEecCCCHHHH
Q 048654 685 DEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 685 ~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||+||++|+|++. |+.+.+
T Consensus 499 -----rv~vm~~G~iVE~-G~~~~v 517 (539)
T COG1123 499 -----RVAVMYDGRIVEE-GPTEKV 517 (539)
T ss_pred -----eEEEEECCeEEEe-CCHHHH
Confidence 9999999999974 665554
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-77 Score=679.27 Aligned_cols=459 Identities=20% Similarity=0.268 Sum_probs=333.6
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
++|+++|++++|+++++|+||||+|.+|++++|+||||||||||+++|+|+..|.|..|.|.+.+.++.......
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~----- 78 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD----- 78 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH-----
Confidence 369999999999999999999999999999999999999999999999998765346788887776553221110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHH--HhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL--QILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
..+..++++.+.... .....+.+++....... ..........++.++++.+|+.. ..++++.+|
T Consensus 79 -------~~~~~i~~v~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 144 (506)
T PRK13549 79 -------TERAGIAIIHQELAL------VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-NPATPVGNL 144 (506)
T ss_pred -------HHHCCeEEEEecccc------CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-CcccchhhC
Confidence 011122333221100 00112222221111000 00112234567889999999964 457999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
||||||||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 145 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~- 223 (506)
T PRK13549 145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG- 223 (506)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee-
Confidence 999999999999999999999999999999999999999998765 5799999999999999999999999999864
Q ss_pred cCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccc
Q 048654 399 RGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRD 478 (723)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (723)
.|+.+++... .. ++.. .+. . .. ...+.
T Consensus 224 ~~~~~~~~~~------~~----------~~~~--~~~-----------------------~---~~-----~~~~~---- 250 (506)
T PRK13549 224 TRPAAGMTED------DI----------ITMM--VGR-----------------------E---LT-----ALYPR---- 250 (506)
T ss_pred ecccccCCHH------HH----------HHHh--hCc-----------------------C---cc-----ccccc----
Confidence 4665444210 00 0000 000 0 00 00000
Q ss_pred cceeeecCCCCCCCCCeEEEEEEEEEcCC-CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCcceEEE
Q 048654 479 YSVEFHFPEPTELTPPLLQLIEVSFSYPN-REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-PTEGEVRR 556 (723)
Q Consensus 479 ~~~~~~~~~~~~~~~~~l~~~~ls~~y~~-~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-p~~G~I~~ 556 (723)
+ +.....++|+++||++.|+. ....+|+||||+|++|++++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 251 -------~-~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~ 322 (506)
T PRK13549 251 -------E-PHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322 (506)
T ss_pred -------c-ccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEE
Confidence 0 00113568999999999952 12358999999999999999999999999999999999998 59999998
Q ss_pred CCc------------eeEEEEccccc-----cccCccccHHHHHHhhCCC---CCCCcHHHHHHHHHHhCCCCCCCCcCC
Q 048654 557 SQK------------LRIGRYSQHFV-----DLLTMEETPVSYLLRLHPD---QEGLSKQEAVRAKLGKFGLPSHNHLTP 616 (723)
Q Consensus 557 ~~~------------~~ig~~~q~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~~gl~~~~~~~~ 616 (723)
+++ ..++|++|... ..+++.++........+.. .......+.+.++|+.|++.....+++
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 402 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA 402 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc
Confidence 652 23899999742 2233333321110000100 000012345788999999963334577
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEE
Q 048654 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWV 693 (723)
Q Consensus 617 i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~v 693 (723)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++.++|| ++++
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d-----~v~~ 477 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSD-----RVLV 477 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCC-----EEEE
Confidence 8999999999999999999999999999999999999999999998876 4689999999999999995 9999
Q ss_pred EECCeEEecCCCHHHH
Q 048654 694 VENGTVSRFPGTFEEY 709 (723)
Q Consensus 694 l~~G~i~~~~g~~~~~ 709 (723)
|++|+|+ +.|+++++
T Consensus 478 l~~G~i~-~~~~~~~~ 492 (506)
T PRK13549 478 MHEGKLK-GDLINHNL 492 (506)
T ss_pred EECCEEE-EEeccccC
Confidence 9999997 45677666
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-76 Score=675.18 Aligned_cols=462 Identities=23% Similarity=0.333 Sum_probs=331.0
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEee----------eeec---
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVE----------QEVV--- 232 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~----------q~~~--- 232 (723)
|+++|++++|+++++|+|+||+|.+|++++|+|||||||||||++|+|+....|..|+|.+.+ |...
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 578999999998899999999999999999999999999999999999852124456665531 1000
Q ss_pred -----CCChHH-HHHHHH-hhHHHHHHHHHHHhhhcC-cCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 048654 233 -----GDDRSA-IQAVVS-AHEELVKLREEVASLQNS-TSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKIL 304 (723)
Q Consensus 233 -----~~~~~~-~~~~~~-~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L 304 (723)
+.+... ...+.. .......++..++++.+. ... .....+.+.+...+.. ..........++.++|
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~------~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l 153 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL------YGDDTVLDNVLEALEE-IGYEGKEAVGRAVDLI 153 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEecccccc------CCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 000000 000000 000111122333333321 100 0111223333222111 1122334457889999
Q ss_pred HhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHH
Q 048654 305 AGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFL 380 (723)
Q Consensus 305 ~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l 380 (723)
+.+|+.. ..++++.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++
T Consensus 154 ~~~gl~~-~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 154 EMVQLSH-RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HHcCChh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 9999964 457899999999999999999999999999999999999999999998888654 57999999999999
Q ss_pred HhhCCEEEEEeCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhcc
Q 048654 381 NTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAK 460 (723)
Q Consensus 381 ~~iad~Ii~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (723)
..+||+|++|++|+++. .|+++++..... .... .
T Consensus 233 ~~~~d~i~~l~~G~i~~-~g~~~~~~~~~~-----------------~~~~----------------~------------ 266 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKE-EGTPDEVVAVFM-----------------EGVS----------------E------------ 266 (520)
T ss_pred HHhcCEEEEEeCCEEee-ecCHHHHHHHHH-----------------hhch----------------h------------
Confidence 99999999999999864 577765521100 0000 0
Q ss_pred CcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCC---CcccceeceEEEEecCcEEEEEcCCCCcHH
Q 048654 461 GKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPN---REDFKLSDVDVGIDMGTRVAIVGPNGAGKS 537 (723)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~---~~~~~L~~isl~i~~Ge~vaIvGpNGsGKS 537 (723)
.. .. .+.....++|+++||++.|++ ....+|+|+||+|.+|++++|+||||||||
T Consensus 267 --~~-------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKS 324 (520)
T TIGR03269 267 --VE-------KE-------------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKT 324 (520)
T ss_pred --hc-------cc-------------cccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHH
Confidence 00 00 000013468999999999953 223589999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcceEEEC-Cc-----------------eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHH
Q 048654 538 TLLNLLAGDLSPTEGEVRRS-QK-----------------LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQE 597 (723)
Q Consensus 538 TLlk~L~Gl~~p~~G~I~~~-~~-----------------~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (723)
||+++|+|+++|++|+|.++ +. .+++|++|... ..+++.++.... ... .........
T Consensus 325 TLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~-~~~--~~~~~~~~~ 401 (520)
T TIGR03269 325 TLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEA-IGL--ELPDELARM 401 (520)
T ss_pred HHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHH-HHc--CCCHHHHHH
Confidence 99999999999999999884 21 24899999742 223333332111 111 100001234
Q ss_pred HHHHHHHhCCCCCC----CCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceE
Q 048654 598 AVRAKLGKFGLPSH----NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGV 669 (723)
Q Consensus 598 ~~~~~L~~~gl~~~----~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tV 669 (723)
.+.++|+.+||... ..++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|+++ +.||
T Consensus 402 ~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 481 (520)
T TIGR03269 402 KAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481 (520)
T ss_pred HHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEE
Confidence 57789999999742 235678999999999999999999999999999999999999999999999654 4689
Q ss_pred EEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 670 VLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 670 IivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
|+||||++++..+|| +|++|++|+++ +.|+++++.+.
T Consensus 482 i~vsHd~~~~~~~~d-----~i~~l~~G~i~-~~g~~~~~~~~ 518 (520)
T TIGR03269 482 IIVSHDMDFVLDVCD-----RAALMRDGKIV-KIGDPEEIVEE 518 (520)
T ss_pred EEEeCCHHHHHHhCC-----EEEEEECCEEE-EECCHHHHHhh
Confidence 999999999999995 99999999997 45777776543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-76 Score=674.56 Aligned_cols=465 Identities=22% Similarity=0.341 Sum_probs=334.1
Q ss_pred cceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCCh
Q 048654 164 KDITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDR 236 (723)
Q Consensus 164 ~~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~ 236 (723)
++|+++|++++|++ +++|+||||+|.+|+++||+|||||||||||++|+|+..|. +..|+|.+.+..+.....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 36999999999963 68999999999999999999999999999999999987653 257888877766532221
Q ss_pred HHHHHHHHhhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc--c
Q 048654 237 SAIQAVVSAHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE--M 313 (723)
Q Consensus 237 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~--~ 313 (723)
... ..++ ..++++.+..... ......+.+.+.................++.++|+.+|+... .
T Consensus 84 ~~~----------~~~~~~~ig~v~Q~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (529)
T PRK15134 84 QTL----------RGVRGNKIAMIFQEPMVS----LNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR 149 (529)
T ss_pred HHH----------HHHhcCceEEEecCchhh----cCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH
Confidence 110 0111 1233332211000 000111112221111100112233456788999999999641 3
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
.++++.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++
T Consensus 150 ~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~ 229 (529)
T PRK15134 150 LTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAV 229 (529)
T ss_pred HhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEE
Confidence 47899999999999999999999999999999999999999999999999763 67999999999999999999999
Q ss_pred EeCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCC
Q 048654 390 LHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPL 469 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (723)
|++|+++.+ |+..++...... . +... +. . . ..
T Consensus 230 l~~G~i~~~-g~~~~~~~~~~~---~-------~~~~---------------~~----~---~------~~--------- 261 (529)
T PRK15134 230 MQNGRCVEQ-NRAATLFSAPTH---P-------YTQK---------------LL----N---S------EP--------- 261 (529)
T ss_pred EECCEEEEe-CCHHHHhhCCCC---H-------HHHH---------------HH----H---h------Cc---------
Confidence 999999744 665444210000 0 0000 00 0 0 00
Q ss_pred CCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCC---------cccceeceEEEEecCcEEEEEcCCCCcHHHHH
Q 048654 470 PEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNR---------EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLL 540 (723)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~---------~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLl 540 (723)
...+ .+.+ ....++|+++|+++.|+.. ...+|++|||+|.+|++++|+||||||||||+
T Consensus 262 ~~~~-----------~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl 329 (529)
T PRK15134 262 SGDP-----------VPLP-EPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTG 329 (529)
T ss_pred cccc-----------cccC-CCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHH
Confidence 0000 0000 1135689999999999621 23589999999999999999999999999999
Q ss_pred HHHHcCCCCCcceEEECCc--------------eeEEEEccccc----cccCccccHHHHHHhhCCC-CCCCcHHHHHHH
Q 048654 541 NLLAGDLSPTEGEVRRSQK--------------LRIGRYSQHFV----DLLTMEETPVSYLLRLHPD-QEGLSKQEAVRA 601 (723)
Q Consensus 541 k~L~Gl~~p~~G~I~~~~~--------------~~ig~~~q~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 601 (723)
++|+|+++ ++|+|++++. ..++|++|... ..+++.++.... ...+.. .........+.+
T Consensus 330 k~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~ 407 (529)
T PRK15134 330 LALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG-LRVHQPTLSAAQREQQVIA 407 (529)
T ss_pred HHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH-HHhccccCChHHHHHHHHH
Confidence 99999985 8999998762 24899999742 223333332211 111110 000112346788
Q ss_pred HHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHH
Q 048654 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSR 677 (723)
Q Consensus 602 ~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~ 677 (723)
+|+.|||.....++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++
T Consensus 408 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~ 487 (529)
T PRK15134 408 VMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH 487 (529)
T ss_pred HHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 9999999633335678999999999999999999999999999999999999999999999865 468999999999
Q ss_pred HHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 678 LISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 678 ~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
++..+|| +|++|++|+|+. .|+++++.
T Consensus 488 ~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~ 514 (529)
T PRK15134 488 VVRALCH-----QVIVLRQGEVVE-QGDCERVF 514 (529)
T ss_pred HHHHhcC-----eEEEEECCEEEE-EcCHHHHh
Confidence 9999995 999999999974 57777764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-75 Score=679.61 Aligned_cols=499 Identities=19% Similarity=0.248 Sum_probs=337.8
Q ss_pred ccceEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHH
Q 048654 163 VKDITIDNFSVAAR----GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 163 ~~~I~l~nls~~y~----~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~ 238 (723)
.++|+++||++.|+ +.++|+||||+|.+|+++||||+||||||||+++|+|++.| ..|.|.+.+..+.+.....
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEeccccccc
Confidence 34699999999996 35799999999999999999999999999999999998755 4556655444331110000
Q ss_pred HHHHHH-hhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc--ccc
Q 048654 239 IQAVVS-AHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK--EMQ 314 (723)
Q Consensus 239 ~~~~~~-~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~ 314 (723)
. .+.. .......++ ..++++.+.... .......+.+++.........+.......++.++|+.+||.. ...
T Consensus 88 ~-~~~~~~~~~~~~~r~~~ig~v~Q~~~~----~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 162 (623)
T PRK10261 88 I-ELSEQSAAQMRHVRGADMAMIFQEPMT----SLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTIL 162 (623)
T ss_pred c-ccccCCHHHHHHHhCCCEEEEEeCchh----hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHH
Confidence 0 0000 000111111 123333321100 000112334444332221112233455678999999999953 235
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 7899999999999999999999999999999999999999999888888754 679999999999999999999999
Q ss_pred eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCC
Q 048654 391 HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLP 470 (723)
Q Consensus 391 ~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (723)
++|+++. .|+++++..... ..|.+.+... ..... . . .... .....+..
T Consensus 243 ~~G~i~~-~g~~~~~~~~~~----------~~~~~~l~~~---~~~~~-~-~---------------~~~~-~~~~~~~~ 290 (623)
T PRK10261 243 YQGEAVE-TGSVEQIFHAPQ----------HPYTRALLAA---VPQLG-A-M---------------KGLD-YPRRFPLI 290 (623)
T ss_pred eCCeecc-cCCHHHhhcCCC----------Chhhhhhhhc---cCccc-c-c---------------cccc-CCcccccc
Confidence 9999974 577766532100 0000000000 00000 0 0 0000 00000000
Q ss_pred C-CCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCC---------cccceeceEEEEecCcEEEEEcCCCCcHHHHH
Q 048654 471 E-APKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNR---------EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLL 540 (723)
Q Consensus 471 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~---------~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLl 540 (723)
. ....... ...++.......++|+++||++.|+.. ...+|+||||+|.+|++++|+|+||||||||+
T Consensus 291 ~~~~~~~~~---~~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLl 367 (623)
T PRK10261 291 SLEHPAKQE---PPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG 367 (623)
T ss_pred ccccccccC---cccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHH
Confidence 0 0000000 000111111235799999999999621 13589999999999999999999999999999
Q ss_pred HHHHcCCCCCcceEEECCc--------------eeEEEEccccc----cccCccccHHHHHHhhCCCCCCCcHHHHHHHH
Q 048654 541 NLLAGDLSPTEGEVRRSQK--------------LRIGRYSQHFV----DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK 602 (723)
Q Consensus 541 k~L~Gl~~p~~G~I~~~~~--------------~~ig~~~q~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (723)
++|+|+++|++|+|++++. ..++|++|+.. ..+++.++.... +..............+.++
T Consensus 368 k~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~~ 446 (623)
T PRK10261 368 RALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEP-LRVHGLLPGKAAAARVAWL 446 (623)
T ss_pred HHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHH-HHHcCCCCHHHHHHHHHHH
Confidence 9999999999999998663 24899999742 222333332211 1111100000123567889
Q ss_pred HHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHH
Q 048654 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRL 678 (723)
Q Consensus 603 L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~ 678 (723)
|+.+||.....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+++
T Consensus 447 L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~ 526 (623)
T PRK10261 447 LERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV 526 (623)
T ss_pred HHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999633334677999999999999999999999999999999999999999999999664 4689999999999
Q ss_pred HHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 679 ISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 679 ~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+..+|| ||++|++|+|+. .|+++++.
T Consensus 527 v~~~~d-----ri~vl~~G~iv~-~g~~~~i~ 552 (623)
T PRK10261 527 VERISH-----RVAVMYLGQIVE-IGPRRAVF 552 (623)
T ss_pred HHHhCC-----EEEEEECCEEEE-ecCHHHHh
Confidence 999995 999999999975 57776653
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=667.35 Aligned_cols=459 Identities=19% Similarity=0.298 Sum_probs=328.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++|++++|+++++|+||||+|++|++++|+||||||||||+++|+|+..|.|.+|.|.+.++.+.......
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~------ 74 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD------ 74 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH------
Confidence 37899999999999999999999999999999999999999999999998654345788887776653222110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHH-H--hcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL-Q--ILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~--~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
..+..++++.+.... .....+.+++....... . .........++.++++.+|+.....++++.+|
T Consensus 75 ------~~~~~i~~v~q~~~~------~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 142 (500)
T TIGR02633 75 ------TERAGIVIIHQELTL------VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDY 142 (500)
T ss_pred ------HHhCCEEEEeecccc------CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhC
Confidence 001112222221100 00112222221111000 0 01122345678899999999643335789999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+++.+
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 999999999999999999999999999999999999999998764 57999999999999999999999999998743
Q ss_pred cCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccc
Q 048654 399 RGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRD 478 (723)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (723)
++...+... .. ..... + .. . . ...+.
T Consensus 223 -~~~~~~~~~------~~----------~~~~~--~-----------------------~~---~----~-~~~~~---- 248 (500)
T TIGR02633 223 -KDMSTMSED------DI----------ITMMV--G-----------------------RE---I----T-SLYPH---- 248 (500)
T ss_pred -cCcccCCHH------HH----------HHHHh--C-----------------------cc---c----c-ccccc----
Confidence 444332110 00 00000 0 00 0 0 00000
Q ss_pred cceeeecCCCCCCCCCeEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CcceEEE
Q 048654 479 YSVEFHFPEPTELTPPLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVRR 556 (723)
Q Consensus 479 ~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-~~G~I~~ 556 (723)
.+....+++|+++|+++.|++. ...+|+|+||+|.+|++++|+|||||||||||++|+|+++| ++|+|.+
T Consensus 249 --------~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~ 320 (500)
T TIGR02633 249 --------EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI 320 (500)
T ss_pred --------cccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEE
Confidence 0001134689999999999421 23589999999999999999999999999999999999995 8999998
Q ss_pred CCc------------eeEEEEccccc-----cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCC
Q 048654 557 SQK------------LRIGRYSQHFV-----DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTP 616 (723)
Q Consensus 557 ~~~------------~~ig~~~q~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~ 616 (723)
+++ ..++|++|.+. ..+++.++................ ....+.++|+.|++.....+++
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 400 (500)
T TIGR02633 321 NGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP 400 (500)
T ss_pred CCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc
Confidence 652 24799999742 122222221110000010000111 2345788999999964334578
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEE
Q 048654 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWV 693 (723)
Q Consensus 617 i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~v 693 (723)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| ++++
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d-----~v~~ 475 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD-----RVLV 475 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC-----EEEE
Confidence 8999999999999999999999999999999999999999999888776 4689999999999999995 9999
Q ss_pred EECCeEEecCCCHHHH
Q 048654 694 VENGTVSRFPGTFEEY 709 (723)
Q Consensus 694 l~~G~i~~~~g~~~~~ 709 (723)
|++|+|+. ..+..++
T Consensus 476 l~~G~i~~-~~~~~~~ 490 (500)
T TIGR02633 476 IGEGKLKG-DFVNHAL 490 (500)
T ss_pred EECCEEEE-EEccccC
Confidence 99999974 3443443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-75 Score=665.24 Aligned_cols=450 Identities=19% Similarity=0.263 Sum_probs=326.3
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
++|+++|++++|+++++|+|+||+|++|+++||+|||||||||||++|+|+..| ..|+|.+.+.++........
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~---- 77 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHKLA---- 77 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEECCCCCHHHH----
Confidence 369999999999999999999999999999999999999999999999998654 45677776665532221100
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH---HHh---cCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK---LQI---LGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~---~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
.+..++++.+.... .....+.+.+...... ... ........++.++|+.+|+.. ..+++
T Consensus 78 --------~~~~i~~v~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~ 142 (510)
T PRK09700 78 --------AQLGIGIIYQELSV------IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-DLDEK 142 (510)
T ss_pred --------HHCCeEEEeecccc------cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-Ccccc
Confidence 01112222221100 0011122222110000 000 011234567889999999974 45899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 143 ~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~ 222 (510)
T PRK09700 143 VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGS 222 (510)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998765 5799999999999999999999999999
Q ss_pred EEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCc
Q 048654 395 LHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPK 474 (723)
Q Consensus 395 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (723)
++ +.|+++++... .. .+.. .+.. ... .. +.
T Consensus 223 i~-~~g~~~~~~~~------~~----------~~~~--~~~~--------------------------~~~--~~---~~ 252 (510)
T PRK09700 223 SV-CSGMVSDVSND------DI----------VRLM--VGRE--------------------------LQN--RF---NA 252 (510)
T ss_pred Ee-eecchhhCCHH------HH----------HHHh--cCCC--------------------------ccc--cc---cc
Confidence 96 56777655311 00 0000 0000 000 00 00
Q ss_pred cccccceeeecCC-CCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcce
Q 048654 475 KWRDYSVEFHFPE-PTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553 (723)
Q Consensus 475 ~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~ 553 (723)
. .+. .....+++|+++|+++.|+ .+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+
T Consensus 253 ~---------~~~~~~~~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~ 319 (510)
T PRK09700 253 M---------KENVSNLAHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE 319 (510)
T ss_pred c---------ccccccCCCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence 0 000 0011356899999999763 2799999999999999999999999999999999999999999
Q ss_pred EEECCc------------eeEEEEccccc-cccCccccHHHHHHhh-C------CCCCCC----cHHHHHHHHHHhCCCC
Q 048654 554 VRRSQK------------LRIGRYSQHFV-DLLTMEETPVSYLLRL-H------PDQEGL----SKQEAVRAKLGKFGLP 609 (723)
Q Consensus 554 I~~~~~------------~~ig~~~q~~~-~~~~~~~~~~~~~~~~-~------~~~~~~----~~~~~~~~~L~~~gl~ 609 (723)
|++++. ..++|++|... ..+....++...+... . ....+. .....+.++|+.|||.
T Consensus 320 I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 399 (510)
T PRK09700 320 IRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399 (510)
T ss_pred EEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence 998662 24899999631 1111112222222110 0 000010 1224577899999996
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcC
Q 048654 610 SHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDE 686 (723)
Q Consensus 610 ~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~ 686 (723)
....++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||
T Consensus 400 ~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d-- 477 (510)
T PRK09700 400 CHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCD-- 477 (510)
T ss_pred CCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC--
Confidence 33345788999999999999999999999999999999999999999999999876 4689999999999999995
Q ss_pred CCcEEEEEECCeEEec
Q 048654 687 ERSEIWVVENGTVSRF 702 (723)
Q Consensus 687 ~~drv~vl~~G~i~~~ 702 (723)
+|++|++|+|+..
T Consensus 478 ---~i~~l~~G~i~~~ 490 (510)
T PRK09700 478 ---RIAVFCEGRLTQI 490 (510)
T ss_pred ---EEEEEECCEEEEE
Confidence 9999999999753
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-75 Score=662.71 Aligned_cols=454 Identities=18% Similarity=0.233 Sum_probs=328.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+..| ..|.|.+.+..+........
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~----- 83 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPCARLTPAKA----- 83 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHH-----
Confidence 69999999999999999999999999999999999999999999999998654 56677776655432221110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
....++++.+.... .....+.+++.... ........++.++++.+|+.. ..++++.+||||
T Consensus 84 -------~~~~i~~v~q~~~~------~~~~tv~e~l~~~~-----~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG 144 (510)
T PRK15439 84 -------HQLGIYLVPQEPLL------FPNLSVKENILFGL-----PKRQASMQKMKQLLAALGCQL-DLDSSAGSLEVA 144 (510)
T ss_pred -------HhCCEEEEeccCcc------CCCCcHHHHhhccc-----ccchHHHHHHHHHHHHcCCCc-cccCChhhCCHH
Confidence 00112222221100 01112222221110 011234567889999999974 457999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|+
T Consensus 145 ~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~ 223 (510)
T PRK15439 145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGK 223 (510)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecC
Confidence 999999999999999999999999999999999999998765 579999999999999999999999999996 4688
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccccce
Q 048654 402 FDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSV 481 (723)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (723)
++++.... . ++... +.... . .... ... .
T Consensus 224 ~~~~~~~~------~----------~~~~~--~~~~~-------------------~---~~~~-------~~~-----~ 251 (510)
T PRK15439 224 TADLSTDD------I----------IQAIT--PAARE-------------------K---SLSA-------SQK-----L 251 (510)
T ss_pred hHHcCHHH------H----------HHHHh--Ccccc-------------------c---cccc-------ccc-----c
Confidence 76653210 0 00000 00000 0 0000 000 0
Q ss_pred eeecCC---CCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 482 EFHFPE---PTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 482 ~~~~~~---~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.+.++. +....+++|+++|+++ . +|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~l~~--~-----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g 324 (510)
T PRK15439 252 WLELPGNRRQQAAGAPVLTVEDLTG--E-----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNG 324 (510)
T ss_pred cccccccccccCCCCceEEEeCCCC--C-----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECC
Confidence 000110 1112456899999983 1 58999999999999999999999999999999999999999999876
Q ss_pred c------------eeEEEEccccc-cccCccccHHHHHHhh----CCCC-CCCcHHHHHHHHHHhCCCCCCCCcCCCCCC
Q 048654 559 K------------LRIGRYSQHFV-DLLTMEETPVSYLLRL----HPDQ-EGLSKQEAVRAKLGKFGLPSHNHLTPIAKL 620 (723)
Q Consensus 559 ~------------~~ig~~~q~~~-~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~L~~~gl~~~~~~~~i~~L 620 (723)
. ..++|++|.+. ..+....+....+... .... ......+.+.++|+.|||.....++++.+|
T Consensus 325 ~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 404 (510)
T PRK15439 325 KEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTL 404 (510)
T ss_pred EECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccC
Confidence 3 24899998632 1111111222221110 0000 001123457789999999633345778999
Q ss_pred CHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECC
Q 048654 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENG 697 (723)
Q Consensus 621 SGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G 697 (723)
||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++.++|| ++++|++|
T Consensus 405 SgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d-----~i~~l~~G 479 (510)
T PRK15439 405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMAD-----RVLVMHQG 479 (510)
T ss_pred CcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC-----EEEEEECC
Confidence 999999999999999999999999999999999999999999876 4689999999999999995 99999999
Q ss_pred eEEecCCCHHHHH
Q 048654 698 TVSRFPGTFEEYK 710 (723)
Q Consensus 698 ~i~~~~g~~~~~~ 710 (723)
+|+. .|+++++.
T Consensus 480 ~i~~-~~~~~~~~ 491 (510)
T PRK15439 480 EISG-ALTGAAIN 491 (510)
T ss_pred EEEE-EEccccCC
Confidence 9974 56665543
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-74 Score=656.21 Aligned_cols=449 Identities=22% Similarity=0.300 Sum_probs=325.0
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|+++++|+|+||+|.+|+++||+|||||||||||++|+|+..| ..|.|.+.+.++........
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~----- 76 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVTFNGPKSS----- 76 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHH-----
Confidence 59999999999999999999999999999999999999999999999998755 45667766665432211100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHH---HhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL---QILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
.+..++++.+.... .....+.+++....... ..........++.++++.+|+.. ..++++.+|
T Consensus 77 -------~~~~i~~v~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 142 (501)
T PRK10762 77 -------QEAGIGIIHQELNL------IPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGEL 142 (501)
T ss_pred -------HhCCEEEEEcchhc------cCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-CccCchhhC
Confidence 01112222211000 00112222221111000 00112234567889999999974 457899999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 143 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~- 221 (501)
T PRK10762 143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA- 221 (501)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-
Confidence 999999999999999999999999999999999999999888764 5799999999999999999999999999964
Q ss_pred cCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccc
Q 048654 399 RGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRD 478 (723)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (723)
.|+.+++... .. .+.. .+. ... ...+.
T Consensus 222 ~~~~~~~~~~------~~----------~~~~--~~~--------------------------~~~-----~~~~~---- 248 (501)
T PRK10762 222 EREVADLTED------SL----------IEMM--VGR--------------------------KLE-----DQYPR---- 248 (501)
T ss_pred ecCcCcCCHH------HH----------HHHh--cCC--------------------------Ccc-----ccccc----
Confidence 4555443110 00 0000 000 000 00000
Q ss_pred cceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 479 YSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 479 ~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
++. ....++|+++|+++ .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 249 ------~~~--~~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g 313 (501)
T PRK10762 249 ------LDK--APGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG 313 (501)
T ss_pred ------ccc--CCCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 000 11346899999984 259999999999999999999999999999999999999999999876
Q ss_pred c------------eeEEEEccccc-----cccCccccHHHHHHhhCCCCCC-C---cHHHHHHHHHHhCCCCCCCCcCCC
Q 048654 559 K------------LRIGRYSQHFV-----DLLTMEETPVSYLLRLHPDQEG-L---SKQEAVRAKLGKFGLPSHNHLTPI 617 (723)
Q Consensus 559 ~------------~~ig~~~q~~~-----~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~L~~~gl~~~~~~~~i 617 (723)
. ..++|++|... ..+++.++.............+ . ...+.++++|+.|||.....++++
T Consensus 314 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 393 (501)
T PRK10762 314 HEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI 393 (501)
T ss_pred EECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch
Confidence 2 24899999742 2223332221100000000000 1 123457889999999533345788
Q ss_pred CCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEE
Q 048654 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVV 694 (723)
Q Consensus 618 ~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl 694 (723)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|
T Consensus 394 ~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d-----~v~~l 468 (501)
T PRK10762 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD-----RILVM 468 (501)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC-----EEEEE
Confidence 9999999999999999999999999999999999999999999998873 589999999999999995 99999
Q ss_pred ECCeEEecCCCHHHH
Q 048654 695 ENGTVSRFPGTFEEY 709 (723)
Q Consensus 695 ~~G~i~~~~g~~~~~ 709 (723)
++|+|+. .|+++++
T Consensus 469 ~~G~i~~-~~~~~~~ 482 (501)
T PRK10762 469 HEGRISG-EFTREQA 482 (501)
T ss_pred ECCEEEE-EeccccC
Confidence 9999974 4565554
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-74 Score=654.16 Aligned_cols=455 Identities=24% Similarity=0.284 Sum_probs=321.5
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|+++++|+|+||+|.+|++++|+|||||||||||++|+|+..| .+|.|.+.++.+.......
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~~~~~~~------ 74 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSHITRLSFEQ------ 74 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccccCCHHH------
Confidence 59999999999988899999999999999999999999999999999998655 4456655444332111110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
++..++++.+....... ... ..... ..+.+.+. . ......++.++++.+|+.+ ..++++.+||||
T Consensus 75 -------~~~~i~~~~q~~~~~~~-~~~-~~~~~---~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG 139 (490)
T PRK10938 75 -------LQKLVSDEWQRNNTDML-SPG-EDDTG---RTTAEIIQ-D-EVKDPARCEQLAQQFGITA-LLDRRFKYLSTG 139 (490)
T ss_pred -------HHHHhceeccCcchhhc-ccc-hhhcc---ccHHHhcc-c-chhHHHHHHHHHHHcCCHh-hhhCCcccCCHH
Confidence 11122222211000000 000 00000 00111110 0 1123567889999999964 458999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~ 218 (490)
T PRK10938 140 ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE-TGE 218 (490)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-eCC
Confidence 999999999999999999999999999999999999999876 5799999999999999999999999999974 466
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccccce
Q 048654 402 FDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSV 481 (723)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (723)
++++.... .+..... . ..+... +.+.... .
T Consensus 219 ~~~~~~~~----------------~~~~~~~---------------~------------~~~~~~-~~~~~~~----~-- 248 (490)
T PRK10938 219 REEILQQA----------------LVAQLAH---------------S------------EQLEGV-QLPEPDE----P-- 248 (490)
T ss_pred HHHHhcch----------------hhhhhhh---------------h------------hccCcc-ccCcccc----c--
Confidence 55442110 0000000 0 000000 0000000 0
Q ss_pred eeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CcceEEECCc-
Q 048654 482 EFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVRRSQK- 559 (723)
Q Consensus 482 ~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-~~G~I~~~~~- 559 (723)
..+.......++|+++|+++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+.+| ++|+|+++++
T Consensus 249 --~~~~~~~~~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~ 324 (490)
T PRK10938 249 --SARHALPANEPRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR 324 (490)
T ss_pred --ccccccCCCCceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc
Confidence 0000001235789999999999753 489999999999999999999999999999999998876 6999988652
Q ss_pred -----------eeEEEEccccccccCccccHHHHHHh-hCC--CC-CCCc--HHHHHHHHHHhCCCCCCCCcCCCCCCCH
Q 048654 560 -----------LRIGRYSQHFVDLLTMEETPVSYLLR-LHP--DQ-EGLS--KQEAVRAKLGKFGLPSHNHLTPIAKLSG 622 (723)
Q Consensus 560 -----------~~ig~~~q~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~--~~~~~~~~L~~~gl~~~~~~~~i~~LSG 622 (723)
..++|++|..........+....... ... .. .... ..+.+.++++.+||.....++++.+|||
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 404 (490)
T PRK10938 325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSW 404 (490)
T ss_pred CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCH
Confidence 23789998642111111111111111 010 00 0011 2346788999999975234577899999
Q ss_pred HHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHh-cCcCCCcEEEEEECC
Q 048654 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRV-CDDEERSEIWVVENG 697 (723)
Q Consensus 623 GqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~-~d~~~~drv~vl~~G 697 (723)
||||||+|||||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+ | |++++|++|
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~-----d~v~~l~~G 479 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACIT-----HRLEFVPDG 479 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhh-----eeEEEecCC
Confidence 99999999999999999999999999999999999999998873 3699999999999874 6 599999999
Q ss_pred eEEec
Q 048654 698 TVSRF 702 (723)
Q Consensus 698 ~i~~~ 702 (723)
+|+.+
T Consensus 480 ~i~~~ 484 (490)
T PRK10938 480 DIYRY 484 (490)
T ss_pred ceEEe
Confidence 98754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-74 Score=654.00 Aligned_cols=453 Identities=22% Similarity=0.262 Sum_probs=323.8
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
++|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+..| ..|.|.+.++.+.......
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~~~~~~~----- 75 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEMRFASTTA----- 75 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHH-----
Confidence 469999999999999999999999999999999999999999999999998755 4566766666543211100
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHH-HH-HhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE-KL-QILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l-~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
.++..++++.+.... .....+.+++..... .. ..........++.++|+.+|+.. ..++++.+|
T Consensus 76 -------~~~~~i~~v~q~~~~------~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 141 (501)
T PRK11288 76 -------ALAAGVAIIYQELHL------VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-DPDTPLKYL 141 (501)
T ss_pred -------HHhCCEEEEEechhc------cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-CcCCchhhC
Confidence 011122222221100 001112222221100 00 00122344567889999999974 457899999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 142 SIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999999865 57999999999999999999999999998632
Q ss_pred cCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccc
Q 048654 399 RGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRD 478 (723)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (723)
...+.... . ..+ .+.. .+ ... . ... .
T Consensus 222 ~~~~~~~~--~----~~~----------~~~~--~~-----------------------~~~---------~-~~~---~ 247 (501)
T PRK11288 222 FDDMAQVD--R----DQL----------VQAM--VG-----------------------REI---------G-DIY---G 247 (501)
T ss_pred cCccccCC--H----HHH----------HHHh--cC-----------------------CCc---------c-ccc---c
Confidence 11111100 0 000 0000 00 000 0 000 0
Q ss_pred cceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 479 YSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 479 ~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
. .+....+++++++|+++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|++++
T Consensus 248 ------~-~~~~~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g 314 (501)
T PRK11288 248 ------Y-RPRPLGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG 314 (501)
T ss_pred ------c-cccCCCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECC
Confidence 0 011113457999999842 279999999999999999999999999999999999999999999875
Q ss_pred c------------eeEEEEccccc-cccCccccHHHHHHhh-CCC--CCC----C-cHHHHHHHHHHhCCCCCCCCcCCC
Q 048654 559 K------------LRIGRYSQHFV-DLLTMEETPVSYLLRL-HPD--QEG----L-SKQEAVRAKLGKFGLPSHNHLTPI 617 (723)
Q Consensus 559 ~------------~~ig~~~q~~~-~~~~~~~~~~~~~~~~-~~~--~~~----~-~~~~~~~~~L~~~gl~~~~~~~~i 617 (723)
+ ..++|++|... ..+....+....+... ... ..+ . ...+.+.++|+.|++.....++++
T Consensus 315 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 394 (501)
T PRK11288 315 KPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI 394 (501)
T ss_pred EECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc
Confidence 3 24789998642 1111112222221110 000 000 0 112457889999999533445788
Q ss_pred CCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE
Q 048654 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV 694 (723)
Q Consensus 618 ~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl 694 (723)
.+|||||||||+|||||+.+|+||||||||+|||+.++..|.++|.++ +.|||+||||++++..+|| ++++|
T Consensus 395 ~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d-----~i~~l 469 (501)
T PRK11288 395 MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVAD-----RIVVM 469 (501)
T ss_pred ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCC-----EEEEE
Confidence 999999999999999999999999999999999999999999998765 4699999999999999995 99999
Q ss_pred ECCeEEecCCCHHHHH
Q 048654 695 ENGTVSRFPGTFEEYK 710 (723)
Q Consensus 695 ~~G~i~~~~g~~~~~~ 710 (723)
++|+++. .|+.+++.
T Consensus 470 ~~g~i~~-~~~~~~~~ 484 (501)
T PRK11288 470 REGRIAG-ELAREQAT 484 (501)
T ss_pred ECCEEEE-EEccccCC
Confidence 9999974 56666654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=650.13 Aligned_cols=449 Identities=19% Similarity=0.258 Sum_probs=322.5
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhH
Q 048654 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHE 247 (723)
Q Consensus 168 l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 247 (723)
++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| .+|.|.+.++.+.......
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~--------- 69 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKE--------- 69 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHH---------
Confidence 36899999999999999999999999999999999999999999998654 5677777766553221110
Q ss_pred HHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHh--cCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 248 ELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI--LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 248 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.++..++++.+.... .....+.+++......... ........++.++++.+|+.. ..++++.+|||||
T Consensus 70 ---~~~~~i~~v~q~~~~------~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq 139 (491)
T PRK10982 70 ---ALENGISMVHQELNL------VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-DPRAKVATLSVSQ 139 (491)
T ss_pred ---HHhCCEEEEeccccc------ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHH
Confidence 011112222221100 0011222222111000000 112233467889999999974 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCCh
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNF 402 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~ 402 (723)
||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+.
T Consensus 140 ~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~ 218 (491)
T PRK10982 140 MQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA-TQPL 218 (491)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe-ecCh
Confidence 99999999999999999999999999999999999998764 5799999999999999999999999999964 4554
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCcccccccee
Q 048654 403 DDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVE 482 (723)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (723)
+++... .. ..... +. ... .
T Consensus 219 ~~~~~~------~~----------~~~~~--~~--------------------------~~~--------~--------- 237 (491)
T PRK10982 219 AGLTMD------KI----------IAMMV--GR--------------------------SLT--------Q--------- 237 (491)
T ss_pred hhCCHH------HH----------HHHHh--CC--------------------------Ccc--------c---------
Confidence 433110 00 00000 00 000 0
Q ss_pred eecCC-CCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-
Q 048654 483 FHFPE-PTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL- 560 (723)
Q Consensus 483 ~~~~~-~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~- 560 (723)
.++. .....+++|+++|+++.|. .+|++|||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 238 -~~~~~~~~~~~~~i~~~~l~~~~~----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 312 (491)
T PRK10982 238 -RFPDKENKPGEVILEVRNLTSLRQ----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI 312 (491)
T ss_pred -ccccccCCCCCcEEEEeCcccccC----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEEC
Confidence 0000 0011346899999999752 38999999999999999999999999999999999999999999987631
Q ss_pred -----------eEEEEccccc-----cccCcccc-HHHHHHhhCCC---CCCCcHHHHHHHHHHhCCCCCCCCcCCCCCC
Q 048654 561 -----------RIGRYSQHFV-----DLLTMEET-PVSYLLRLHPD---QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKL 620 (723)
Q Consensus 561 -----------~ig~~~q~~~-----~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~L 620 (723)
.++|++|... ..+++.++ ....+...... .........++.+++.+++.....++++.+|
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 392 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSL 392 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccC
Confidence 2788888631 22222111 11111111110 0001123457889999999643345788999
Q ss_pred CHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECC
Q 048654 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENG 697 (723)
Q Consensus 621 SGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G 697 (723)
||||||||+||||++.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| |+++|++|
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d-----~v~~l~~g 467 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITD-----RILVMSNG 467 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCC-----EEEEEECC
Confidence 999999999999999999999999999999999999999998665 5799999999999999995 99999999
Q ss_pred eEEecCCCHHHHH
Q 048654 698 TVSRFPGTFEEYK 710 (723)
Q Consensus 698 ~i~~~~g~~~~~~ 710 (723)
+++.+ ++.+.|.
T Consensus 468 ~i~~~-~~~~~~~ 479 (491)
T PRK10982 468 LVAGI-VDTKTTT 479 (491)
T ss_pred EEEEE-EccccCC
Confidence 99843 4444444
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=581.92 Aligned_cols=466 Identities=24% Similarity=0.349 Sum_probs=357.1
Q ss_pred ccceEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeeecCCC
Q 048654 163 VKDITIDNFSVAAR----GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEVVGDD 235 (723)
Q Consensus 163 ~~~I~l~nls~~y~----~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~~~~~ 235 (723)
.+.|.++|+++.|. ...++++|||+|.+||.+||||.||||||-..+.|+|++.. ...++.|.|.+.++....
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 45799999999995 57899999999999999999999999999999999997543 123468888887765443
Q ss_pred hHHHHHHHHhhHHHHHHHH-HHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc--
Q 048654 236 RSAIQAVVSAHEELVKLRE-EVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK-- 311 (723)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-- 311 (723)
...+. .++. .++++ +..+. ...+...++..+.+....-..+...++++++.++|+.+|+.+
T Consensus 84 e~~lr----------~iRG~~I~MIFQEPMt-----SLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~ 148 (534)
T COG4172 84 ERQLR----------GVRGNKIGMIFQEPMT-----SLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE 148 (534)
T ss_pred HHHHh----------hhcccceEEEeccccc-----ccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh
Confidence 33222 2221 12222 22211 112344667777777766666777888999999999999964
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEE
Q 048654 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEI 387 (723)
Q Consensus 312 ~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~I 387 (723)
...+.++++|||||||||+||.||+++|+|||.||||.+||..-+.+|.++|+++ +.++++||||+..+..+||||
T Consensus 149 ~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV 228 (534)
T COG4172 149 KRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV 228 (534)
T ss_pred hhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhE
Confidence 3457899999999999999999999999999999999999999999998888754 789999999999999999999
Q ss_pred EEEeCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCC
Q 048654 388 IHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDE 467 (723)
Q Consensus 388 i~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (723)
+||.+|+++. .|..+.+... ....|.+.+-.+
T Consensus 229 ~VM~~G~ivE-~~~t~~lF~~----------PqHpYTr~Ll~a------------------------------------- 260 (534)
T COG4172 229 YVMQHGEIVE-TGTTETLFAA----------PQHPYTRKLLAA------------------------------------- 260 (534)
T ss_pred EEEeccEEee-cCcHHHHhhC----------CCChHHHHHHhc-------------------------------------
Confidence 9999999975 4655443221 001111111100
Q ss_pred CCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCc---------ccceeceEEEEecCcEEEEEcCCCCcHHH
Q 048654 468 PLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNRE---------DFKLSDVDVGIDMGTRVAIVGPNGAGKST 538 (723)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~---------~~~L~~isl~i~~Ge~vaIvGpNGsGKST 538 (723)
.|.. ..+......+++|+.++|.+.|+-+. ..++++|||++++|+.+||||.+||||||
T Consensus 261 ----eP~g--------~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsT 328 (534)
T COG4172 261 ----EPSG--------DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKST 328 (534)
T ss_pred ----CCCC--------CCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcch
Confidence 0100 00011123568999999999986321 24689999999999999999999999999
Q ss_pred HHHHHHcCCCCCcceEEECCc--------------eeEEEEccccccccCccccHHHH---HHhhC-CCCCCCcHHHHHH
Q 048654 539 LLNLLAGDLSPTEGEVRRSQK--------------LRIGRYSQHFVDLLTMEETPVSY---LLRLH-PDQEGLSKQEAVR 600 (723)
Q Consensus 539 Llk~L~Gl~~p~~G~I~~~~~--------------~~ig~~~q~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~ 600 (723)
|-.+|.+++++. |.|++.+. .++-.+||+++..+...-++.+. -+..+ +........+++.
T Consensus 329 lG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~ 407 (534)
T COG4172 329 LGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVI 407 (534)
T ss_pred HHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHH
Confidence 999999999987 99998763 24677899876665544443221 12222 2222223456788
Q ss_pred HHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCH
Q 048654 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDS 676 (723)
Q Consensus 601 ~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~ 676 (723)
+.|..+||+....++.+.+.|||||||++||||++.+|.+++|||||++||..-+..+.++|+.+. -+-++||||+
T Consensus 408 ~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL 487 (534)
T COG4172 408 EALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487 (534)
T ss_pred HHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 999999999877778889999999999999999999999999999999999999999999998874 4899999999
Q ss_pred HHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 677 RLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 677 ~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
..+..+|+ +|+||.+|+|++ .|+.+++.
T Consensus 488 ~VvrAl~~-----~viVm~~GkiVE-~G~~~~if 515 (534)
T COG4172 488 AVVRALCH-----RVIVMRDGKIVE-QGPTEAVF 515 (534)
T ss_pred HHHHHhhc-----eEEEEeCCEEee-eCCHHHHh
Confidence 99999995 999999999996 46666543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-68 Score=610.81 Aligned_cols=440 Identities=25% Similarity=0.311 Sum_probs=303.2
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHH
Q 048654 170 NFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEE 248 (723)
Q Consensus 170 nls~~y~~~-~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 248 (723)
+++++|+++ .+|++++ .+++|+++||+|||||||||||++|+|+..|.. |+|.. .+ .. ...+..+-+ .+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~--G~i~~---~~-~~-~~~~~~~~G--~~ 147 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL--GDYEE---EP-SW-DEVLKRFRG--TE 147 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC--ccccC---CC-cH-HHHHHHhCC--hH
Confidence 488999874 6999999 899999999999999999999999999876654 44431 00 00 000000000 01
Q ss_pred HHHHHHHH-------HhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 249 LVKLREEV-------ASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 249 ~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
.......+ ....+... .... ..... +.+.+. ......++.++++.+||.. ..++++.+|
T Consensus 148 l~~~~~~~~~~~~~~~~~~q~~~------~~p~-~~~~t---v~e~l~---~~~~~~~~~~~l~~l~l~~-~~~~~~~~L 213 (590)
T PRK13409 148 LQNYFKKLYNGEIKVVHKPQYVD------LIPK-VFKGK---VRELLK---KVDERGKLDEVVERLGLEN-ILDRDISEL 213 (590)
T ss_pred HHHHHHHHhccCcceeecccchh------hhhh-hhcch---HHHHHH---hhhHHHHHHHHHHHcCCch-hhcCChhhC
Confidence 11111100 00000000 0000 00001 111111 1123457889999999974 458999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
||||||||+||+||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++.
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~----- 288 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP----- 288 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc-----
Confidence 999999999999999999999999999999999999999999877 7899999999999999999999998642
Q ss_pred CChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCcccccc
Q 048654 400 GNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDY 479 (723)
Q Consensus 400 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (723)
|.|..+...... +...+. +... .. ..... ... ..
T Consensus 289 g~~g~~~~~~~~-~~~i~~----~~~~------~~---~~e~~-------------------~~~-------------~~ 322 (590)
T PRK13409 289 GAYGVVSKPKGV-RVGINE----YLKG------YL---PEENM-------------------RIR-------------PE 322 (590)
T ss_pred cccceecchhHH-HHhHHH----HHHh------cc---hhhhh-------------------hcc-------------cc
Confidence 111111111000 000000 0000 00 00000 000 00
Q ss_pred ceeeecCCCC--CCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC
Q 048654 480 SVEFHFPEPT--ELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS 557 (723)
Q Consensus 480 ~~~~~~~~~~--~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~ 557 (723)
...+.++.+. ....++|+++|+++.|++. .|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 399 (590)
T PRK13409 323 PIEFEERPPRDESERETLVEYPDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE 399 (590)
T ss_pred CcceecCCCccccCCceEEEEcceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe
Confidence 0011111111 1245789999999999752 4899999999999999999999999999999999999999999886
Q ss_pred CceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 558 QKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 558 ~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
..++|++|+.... ...++.+.+...... . .....+.++|+.|+|... .++++.+|||||||||+|||||+.+
T Consensus 400 --~~i~y~~Q~~~~~--~~~tv~e~l~~~~~~-~--~~~~~~~~~L~~l~l~~~-~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 400 --LKISYKPQYIKPD--YDGTVEDLLRSITDD-L--GSSYYKSEIIKPLQLERL-LDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred --eeEEEecccccCC--CCCcHHHHHHHHhhh-c--ChHHHHHHHHHHCCCHHH-HhCCcccCCHHHHHHHHHHHHHhcC
Confidence 5799999975321 122322222211111 1 122356789999999754 4578899999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++ ++..
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aD-----rvivl~~-~~~~ 533 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISD-----RLMVFEG-EPGK 533 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEcC-ccee
Confidence 9999999999999999999999999887 4699999999999999995 9999964 6643
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-66 Score=568.01 Aligned_cols=443 Identities=22% Similarity=0.321 Sum_probs=333.1
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHH-HHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA-IQA 241 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~-~~~ 241 (723)
.+.++++|++|+|++.++|++|||+|.+||++||+|.||||||||+|+|+|.+.| ++|+|.+.++.+...+... ...
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEccCCCHHHHHhC
Confidence 3469999999999999999999999999999999999999999999999998764 5667777777665433321 111
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH---HHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK---LQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
.+ ..++|+++.+++. .+.+++....+. +..+++.....++.++|+.+|+... .+.++
T Consensus 84 GI------~~V~QEl~L~p~L-------------sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v 143 (500)
T COG1129 84 GI------ATVHQELSLVPNL-------------SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLV 143 (500)
T ss_pred Cc------EEEeechhccCCc-------------cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhh
Confidence 11 1122333333332 222222111111 2234556778899999999998634 57899
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
.+||+||||.|+|||||..+++||||||||++|+......|+++++++ |.+||+|||+++++..+||||.||++|++
T Consensus 144 ~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~ 223 (500)
T COG1129 144 GDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223 (500)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999988865 67999999999999999999999999998
Q ss_pred EEecCC-hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCc
Q 048654 396 HFYRGN-FDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPK 474 (723)
Q Consensus 396 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (723)
+.. .+ ..++... ++.+ .. .++ .+.
T Consensus 224 v~~-~~~~~~~~~~------~lv~----------~M--vGr--------------------------~~~---------- 248 (500)
T COG1129 224 VGT-RPTAAETSED------ELVR----------LM--VGR--------------------------ELE---------- 248 (500)
T ss_pred eee-cccccCCCHH------HHHH----------Hh--hCc--------------------------chh----------
Confidence 632 33 1222110 0000 00 000 000
Q ss_pred cccccceeeecC--CCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 475 KWRDYSVEFHFP--EPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 475 ~~~~~~~~~~~~--~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
..|| ......+++++++|++..- .++|+||++++|||+||.|-=|||+|-|+++|.|..++.+|
T Consensus 249 --------~~~~~~~~~~~~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G 314 (500)
T COG1129 249 --------DLFPEPPEEGIGEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSG 314 (500)
T ss_pred --------hhcccccccCCCCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc
Confidence 0011 0012356789999998531 47899999999999999999999999999999999999999
Q ss_pred eEEECCce------------eEEEEccccc-----cccCccccHHHHHHhhCC-C-CCC-CcHHHHHHHHHHhCCCCCCC
Q 048654 553 EVRRSQKL------------RIGRYSQHFV-----DLLTMEETPVSYLLRLHP-D-QEG-LSKQEAVRAKLGKFGLPSHN 612 (723)
Q Consensus 553 ~I~~~~~~------------~ig~~~q~~~-----~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~L~~~gl~~~~ 612 (723)
+|.++++. .++|++-+.. ..+++.+|.....+..+. . ... ....+.++.+...+++....
T Consensus 315 ~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s 394 (500)
T COG1129 315 EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394 (500)
T ss_pred eEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC
Confidence 99998852 4788876432 223333332211111111 1 111 11234578899999998877
Q ss_pred CcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCc
Q 048654 613 HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERS 689 (723)
Q Consensus 613 ~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~d 689 (723)
...++.+||||+||||.|||+|+.+|+||||||||.|+|+.++..|+++|+++. .+|||||.++.++..+||
T Consensus 395 ~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~D----- 469 (500)
T COG1129 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSD----- 469 (500)
T ss_pred ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCC-----
Confidence 778999999999999999999999999999999999999999999999999884 589999999999999995
Q ss_pred EEEEEECCeEEe
Q 048654 690 EIWVVENGTVSR 701 (723)
Q Consensus 690 rv~vl~~G~i~~ 701 (723)
||+||++|+|+.
T Consensus 470 RIlVm~~Gri~~ 481 (500)
T COG1129 470 RILVMREGRIVG 481 (500)
T ss_pred EEEEEECCEEEE
Confidence 999999999985
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-63 Score=580.86 Aligned_cols=247 Identities=26% Similarity=0.348 Sum_probs=178.3
Q ss_pred HHhhhhhcccccccccCccccccCCccccCCccceEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEECCCCccHHHHH
Q 048654 132 KEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGK---ELLKSTSVRISHGKRYGLVGPNGMGKSTLL 208 (723)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~nls~~y~~~---~vL~~isl~i~~Ge~~~LvG~NGsGKSTLl 208 (723)
...+++.+++.+.+++... .+. ........|+++||+|+|+.+ ++|+|+||.|++|+.++|||||||||||++
T Consensus 321 a~~I~~~i~~~~~i~~~~~---~~~-~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i 396 (1228)
T KOG0055|consen 321 AYRIFETIDRKPSIDPYSK---GGR-VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLI 396 (1228)
T ss_pred hHHHHHHhcCCCCCCcccc---cCC-cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHH
Confidence 3568899999998877762 222 224455689999999999876 599999999999999999999999999999
Q ss_pred HHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH-
Q 048654 209 KLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK- 287 (723)
Q Consensus 209 k~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 287 (723)
++|.|++.|. .|+|.+.+.++...+.. .++..++.+.+.... ....+.+++....+.
T Consensus 397 ~LL~RfydP~--~G~V~idG~di~~~~~~-------------~lr~~iglV~QePvl-------F~~tI~eNI~~G~~da 454 (1228)
T KOG0055|consen 397 QLLARFYDPT--SGEVLIDGEDIRNLNLK-------------WLRSQIGLVSQEPVL-------FATTIRENIRYGKPDA 454 (1228)
T ss_pred HHHHHhcCCC--CceEEEcCccchhcchH-------------HHHhhcCeeeechhh-------hcccHHHHHhcCCCcc
Confidence 9999998765 55666665554433222 234444444332111 011112221110000
Q ss_pred -HHhcCchHHHHHHHHHHHhC--CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 048654 288 -LQILGSDAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC 364 (723)
Q Consensus 288 -l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~ 364 (723)
...+......+.+.+++..+ |+.... .....+|||||||||||||||+.+|+||||||||++||+.+...+++.|.
T Consensus 455 t~~~i~~a~k~ana~~fi~~lp~g~~T~v-ge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd 533 (1228)
T KOG0055|consen 455 TREEIEEAAKAANAHDFILKLPDGYDTLV-GERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALD 533 (1228)
T ss_pred cHHHHHHHHHHccHHHHHHhhHHhhcccc-cCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHH
Confidence 00000111123456666665 665433 56667899999999999999999999999999999999999999999998
Q ss_pred hc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChhhHHh
Q 048654 365 RW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407 (723)
Q Consensus 365 ~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~~~~~ 407 (723)
+. ++|.|+|+|+++.+.+ ||+|++|++|+|++ .|+.+++..
T Consensus 534 ~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE-~G~h~ELi~ 576 (1228)
T KOG0055|consen 534 KASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVE-QGTHDELIA 576 (1228)
T ss_pred HhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEE-ecCHHHHHh
Confidence 76 6799999999999999 99999999999975 588777654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=514.54 Aligned_cols=454 Identities=23% Similarity=0.297 Sum_probs=337.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH-HHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS-AIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~-~~~~~~ 243 (723)
.|++++++|.|++..+++||||+|.+||++||+|.|||||||||++|.|++.| ++|+|.+.++++...+.. +...-+
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P--~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC--CcceEEECCEEeccCCHHHHHHcCC
Confidence 58999999999999999999999999999999999999999999999998765 566778888877644332 222222
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH--HHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK--LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
+...++..+.+.++. .+++.-..+. ...++.....+++.++.+++||.-+. ++++..|
T Consensus 82 GMVhQHF~Lv~~lTV-------------------~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-~~~V~dL 141 (501)
T COG3845 82 GMVHQHFMLVPTLTV-------------------AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-DAKVADL 141 (501)
T ss_pred cEEeeccccccccch-------------------hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc-cceeecC
Confidence 222222222222222 2222211111 11234556788999999999997554 7999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|-|+||||.|-+||+++|+||||||||+.|-|...+.|+..|+++ |+|||+|||.++++..+|||+.||+.|+++
T Consensus 142 sVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv-- 219 (501)
T COG3845 142 SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV-- 219 (501)
T ss_pred CcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE--
Confidence 999999999999999999999999999999999999999998865 789999999999999999999999999975
Q ss_pred cCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccc
Q 048654 399 RGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRD 478 (723)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (723)
|.++...+.-.. .+..+. .+. . ..
T Consensus 220 -gt~~~~~~~t~~--------------ela~lM-vG~-------------------------~----------v~----- 243 (501)
T COG3845 220 -GTVDPVAETTEE--------------ELAELM-VGR-------------------------E----------VV----- 243 (501)
T ss_pred -eeecCCCCCCHH--------------HHHHHh-cCC-------------------------c----------cc-----
Confidence 333311100000 000000 000 0 00
Q ss_pred cceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 479 YSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 479 ~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.... + .+..+++++|+++++++.-. +....+++|||+|+.|||+||.|-.|.|.+.|+.+|+|+.+|.+|+|.+++
T Consensus 244 ~~~~--~-~~~~pg~~vL~V~~L~v~~~-~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G 319 (501)
T COG3845 244 LRVV--K-PPSTPGEVVLEVEDLSVKDR-RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNG 319 (501)
T ss_pred cccc--c-CCCCCCCeEEEEeeeEeecC-CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECC
Confidence 0000 1 12234578999999998654 234579999999999999999999999999999999999999999999887
Q ss_pred ce-------------eEEEEcccc-----ccccCccccHHHHHHhhCC-CCCCCc----HHHHHHHHHHhCCCCCCCCcC
Q 048654 559 KL-------------RIGRYSQHF-----VDLLTMEETPVSYLLRLHP-DQEGLS----KQEAVRAKLGKFGLPSHNHLT 615 (723)
Q Consensus 559 ~~-------------~ig~~~q~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~L~~~gl~~~~~~~ 615 (723)
.. .++|+|.+. ...+++.+|.+.......+ ...++- ....++++++.|++.......
T Consensus 320 ~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~ 399 (501)
T COG3845 320 KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA 399 (501)
T ss_pred EeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc
Confidence 53 367777643 1223333443222111000 001111 234467889999998666667
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEE
Q 048654 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIW 692 (723)
Q Consensus 616 ~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~ 692 (723)
|+.+||||++||+.+||-|..+|++||+.+||.|||..+.+.+.+.|.+.. .+|++||-|++++..+|| ||+
T Consensus 400 ~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsD-----rIa 474 (501)
T COG3845 400 PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSD-----RIA 474 (501)
T ss_pred chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhh-----eee
Confidence 889999999999999999999999999999999999999999999987763 579999999999999995 999
Q ss_pred EEECCeEEecCCCHHH
Q 048654 693 VVENGTVSRFPGTFEE 708 (723)
Q Consensus 693 vl~~G~i~~~~g~~~~ 708 (723)
||.+|+|+. ..++++
T Consensus 475 Vi~~Gri~~-~~~~~~ 489 (501)
T COG3845 475 VIYEGRIVG-IVPPEE 489 (501)
T ss_pred eeeCCceec-cccccc
Confidence 999999973 344443
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=560.48 Aligned_cols=211 Identities=27% Similarity=0.373 Sum_probs=172.9
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIG 563 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig 563 (723)
.+|+++||++.|+++...+|+||||+|.+||++||+||||||||||+|+|+|+++|++|+|++++. ..+|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 479999999999753346899999999999999999999999999999999999999999998763 2489
Q ss_pred EEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 564 RYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 564 ~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
|++|.. .+.+++.++...+ ...... ......+.+..+|+.+||.... ++++.+|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~-a~l~g~-~~~~~~~~v~~lLe~lgL~~~~-dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLY-ARLRGV-PAEEIEKVANWSIQSLGLSLYA-DRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHH-HHhcCC-CHHHHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999963 3344555443221 111111 0001234567889999997654 4678999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~~ 713 (723)
||||||+|||+.+++.+.+.|.++ +.|||++||+++++..+|| ||++|.+|+++ ..|++++++.++
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcD-----rV~IL~~G~i~-~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCT-----RLAIMVKGAFQ-CLGTIQHLKSKF 2161 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEE-EECCHHHHHHHh
Confidence 999999999999999999999886 3589999999999999995 99999999997 468988876654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-57 Score=568.45 Aligned_cols=202 Identities=22% Similarity=0.284 Sum_probs=162.1
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
.-|+++||+|+|++...++|+||||+|++||+|||||++|||||||+++|.|+++|++|+|.+++. .++
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 369999999999754346999999999999999999999999999999999999999999998873 368
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC-----------CCCcCCCCCCCHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS-----------HNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~-----------~~~~~~i~~LSGGqkqRv~lA 631 (723)
++++|+..- ...++...+ ..+.. ...+++.++|+..++.+ ... .....||||||||++||
T Consensus 1316 siVpQdp~L---F~GTIreNL-d~~~~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg-e~G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130 1316 GIIPQAPVL---FSGTVRFNL-DPFNE----HNDADLWESLERAHLKDVIRRNSLGLDAEVS-EAGENFSVGQRQLLSLA 1386 (1622)
T ss_pred EEECCCCcc---ccccHHHHh-CcCCC----CCHHHHHHHHHHcCcHHHHHhCccccCcccc-CCCCCCCHHHHHHHHHH
Confidence 999997531 122322222 22111 13455666666655521 111 12347999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+++|+||||||||++||.++...|.+.|++. +.|||+|+|+++.+.. | |+|+||++|+|+++ |+++++
T Consensus 1387 RALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~-----DrIlVLd~G~IvE~-Gt~~eL 1459 (1622)
T PLN03130 1387 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-C-----DRILVLDAGRVVEF-DTPENL 1459 (1622)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-C-----CEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999999999876 3699999999999975 5 59999999999875 888887
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
.+
T Consensus 1460 l~ 1461 (1622)
T PLN03130 1460 LS 1461 (1622)
T ss_pred Hh
Confidence 54
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-57 Score=569.46 Aligned_cols=202 Identities=19% Similarity=0.251 Sum_probs=161.8
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
.|+++||+|+|++...++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.+++. .+++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 59999999999654346999999999999999999999999999999999999999999998873 3589
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCC-------C---cCCCCCCCHHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHN-------H---LTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~-------~---~~~i~~LSGGqkqRv~lAra 633 (723)
+++|+..- ...+....+ ..+.. ...+++.++++..++.+.. . ......||||||||++||||
T Consensus 1314 iVpQdp~L---F~gTIr~NL-~~~~~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1314 IIPQSPVL---FSGTVRFNI-DPFSE----HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred EECCCCee---eCccHHHHc-CCCCC----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 99997531 122322222 22211 1345566666666553211 1 11235799999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+++|+||||||||++||.++...|.+.|++. +.|||+|+|+++.+.. | |+|+||++|+|+++ |+++++.+
T Consensus 1386 LLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~-----DrIlVL~~G~ivE~-Gt~~eLl~ 1458 (1495)
T PLN03232 1386 LLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-C-----DKILVLSSGQVLEY-DSPQELLS 1458 (1495)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-C-----CEEEEEECCEEEEE-CCHHHHHh
Confidence 99999999999999999999999999999886 3699999999999975 5 59999999999875 88888753
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=556.63 Aligned_cols=204 Identities=25% Similarity=0.305 Sum_probs=159.9
Q ss_pred eEEEEEEEEEcCCCc-ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC------------------------
Q 048654 495 LLQLIEVSFSYPNRE-DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP------------------------ 549 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~-~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p------------------------ 549 (723)
-|+++||+|+|++++ .++|+|+||+|++|+++|||||||||||||+++|.|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 499999999997542 4689999999999999999999999999999999999998
Q ss_pred ------------------------------CcceEEECCc-----------eeEEEEccccccccCccccHHHHHHhhCC
Q 048654 550 ------------------------------TEGEVRRSQK-----------LRIGRYSQHFVDLLTMEETPVSYLLRLHP 588 (723)
Q Consensus 550 ------------------------------~~G~I~~~~~-----------~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 588 (723)
++|+|.+++. ..++|++|+..- ...++.+.+....+
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L---F~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML---FNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc---ccccHHHHHhcCCC
Confidence 6999998773 358999997431 12233333222212
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCCC------CcCC----CCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHH
Q 048654 589 DQEGLSKQEAVRAKLGKFGLPSHN------HLTP----IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658 (723)
Q Consensus 589 ~~~~~~~~~~~~~~L~~~gl~~~~------~~~~----i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l 658 (723)
.. ..+++.++++..++.+.. .++. ...||||||||++|||||+++|+||||||||++||.++...|
T Consensus 1322 ~a----t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I 1397 (1466)
T PTZ00265 1322 DA----TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397 (1466)
T ss_pred CC----CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 21 334566666655542210 0122 357999999999999999999999999999999999999999
Q ss_pred HHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC----CeEEecCCCHHHHHH
Q 048654 659 ADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN----GTVSRFPGTFEEYKE 711 (723)
Q Consensus 659 ~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~----G~i~~~~g~~~~~~~ 711 (723)
.+.|.+. +.|+|+|||++..+. .| |+|+||++ |+++...|+.+++.+
T Consensus 1398 ~~~L~~~~~~~~~TvIiIaHRlsti~-~a-----D~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1398 EKTIVDIKDKADKTIITIAHRIASIK-RS-----DKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHhccCCCEEEEEechHHHHH-hC-----CEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999887 369999999999886 46 59999999 896544699998864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-56 Score=558.49 Aligned_cols=204 Identities=24% Similarity=0.281 Sum_probs=163.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
.-|+++||+|+|++...++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.+++. .++
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 469999999999765446999999999999999999999999999999999999999999998873 368
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCC------CcCCC----CCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHN------HLTPI----AKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~~~i----~~LSGGqkqRv~lAr 632 (723)
++++|+..- ...++...+ ..+.. ...+++.++|+..++.+.. .+..+ ..||||||||++|||
T Consensus 1363 ~iVpQdp~L---F~gTIr~NL-dp~~~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LAR 1434 (1522)
T TIGR00957 1363 TIIPQDPVL---FSGSLRMNL-DPFSQ----YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLAR 1434 (1522)
T ss_pred eEECCCCcc---cCccHHHHc-CcccC----CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHH
Confidence 999997531 122322222 21111 1345566777776653210 11223 469999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+++|+||||||||++||.++...|.+.|++. +.|||+|+|+++.+.. | |+|+||++|+|+++ |+++++.
T Consensus 1435 ALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~-----DrIlVld~G~IvE~-G~~~eLl 1507 (1522)
T TIGR00957 1435 ALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-Y-----TRVIVLDKGEVAEF-GAPSNLL 1507 (1522)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-C-----CEEEEEECCEEEEE-CCHHHHH
Confidence 999999999999999999999999999999875 3699999999999875 4 59999999999875 8998876
Q ss_pred HH
Q 048654 711 ED 712 (723)
Q Consensus 711 ~~ 712 (723)
+.
T Consensus 1508 ~~ 1509 (1522)
T TIGR00957 1508 QQ 1509 (1522)
T ss_pred hC
Confidence 53
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-54 Score=541.12 Aligned_cols=202 Identities=22% Similarity=0.277 Sum_probs=163.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
-|+++||+|+|++...++|+||||+|++||+|||||++|||||||+++|.|+++|++|+|.+++. ..++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 59999999999765446899999999999999999999999999999999999999999998873 3589
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCC------CcCCC----CCCCHHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHN------HLTPI----AKLSGGQKARVVFTSI 633 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~~~i----~~LSGGqkqRv~lAra 633 (723)
+++|+..- +..++...+ ..+.. ...+++.++|+..++.+.. .+..+ ..||||||||++||||
T Consensus 1388 iVpQdp~L---F~gTIreNI-dp~~~----~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243 1388 MIPQDPVL---FDGTVRQNV-DPFLE----ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred EECCCCcc---ccccHHHHh-CcccC----CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence 99997531 122332222 22211 1346677888887764321 11222 4799999999999999
Q ss_pred HccC-CCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 634 SMSK-PHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 634 l~~~-p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+++ |+||||||||++||.++...|.+.|++. +.|||+|+|+++.+.. | |+|+||++|+|+++ |+++++.
T Consensus 1460 LL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~-----DrIlVLd~G~VvE~-Gt~~eLl 1532 (1560)
T PTZ00243 1460 LLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-Y-----DKIIVMDHGAVAEM-GSPRELV 1532 (1560)
T ss_pred HhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-C-----CEEEEEECCEEEEE-CCHHHHH
Confidence 9995 8999999999999999999999999875 3699999999999864 5 59999999999875 8998876
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 1533 ~ 1533 (1560)
T PTZ00243 1533 M 1533 (1560)
T ss_pred h
Confidence 4
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-53 Score=529.17 Aligned_cols=202 Identities=26% Similarity=0.366 Sum_probs=162.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
.-|+++||+++|++...++|+||||+|++||+|||+|++|||||||+++|+|+++ .+|+|.+++. .++
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 4699999999997644579999999999999999999999999999999999997 7999998773 368
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCC------cCCC----CCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH------LTPI----AKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~------~~~i----~~LSGGqkqRv~lAr 632 (723)
++++|++.- +..++...+ ..+. ....+++..+|+.+++..... +..+ ..||||||||++|||
T Consensus 1295 s~IpQdp~L---F~GTIR~NL-dp~~----~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1295 GVIPQKVFI---FSGTFRKNL-DPYE----QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred EEEeCCCcc---CccCHHHHh-Cccc----CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence 999997531 122322222 2111 113566778888877642111 1222 369999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+++|+||||||||++||..+...|.+.|++. +.|||+|||+++.+.. | |+|++|++|+|+++ |++.++.
T Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~-----DrIlvL~~G~ivE~-g~p~~Ll 1439 (1490)
T TIGR01271 1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-C-----QQFLVIEGSSVKQY-DSIQKLL 1439 (1490)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-C-----CEEEEEECCEEEEe-CCHHHHH
Confidence 999999999999999999999999999999886 3699999999998875 6 59999999999976 7888775
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 1440 ~ 1440 (1490)
T TIGR01271 1440 N 1440 (1490)
T ss_pred c
Confidence 3
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-53 Score=525.66 Aligned_cols=204 Identities=23% Similarity=0.324 Sum_probs=161.0
Q ss_pred eEEEEEEEEEcCC--CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC---CCcceEEECCc-------eeE
Q 048654 495 LLQLIEVSFSYPN--REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS---PTEGEVRRSQK-------LRI 562 (723)
Q Consensus 495 ~l~~~~ls~~y~~--~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~---p~~G~I~~~~~-------~~i 562 (723)
+|+++||++.|+. ....+|+|||++|++|++++|+|||||||||||++|+|+.+ |++|+|.+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 5899999999952 23468999999999999999999999999999999999997 78899998874 247
Q ss_pred EEEcccc--ccccCccccHHHHHHhhC-CCCCC-CcHHHHHHHHHHhCCCCCCCCcCCCC----CCCHHHHHHHHHHHHH
Q 048654 563 GRYSQHF--VDLLTMEETPVSYLLRLH-PDQEG-LSKQEAVRAKLGKFGLPSHNHLTPIA----KLSGGQKARVVFTSIS 634 (723)
Q Consensus 563 g~~~q~~--~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~L~~~gl~~~~~~~~i~----~LSGGqkqRv~lAral 634 (723)
+|++|+. ...+++.++... ..... +.... ....+.+.++++.++|.+.. ++.++ .|||||||||+||++|
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~-~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~-d~~v~~~~~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRF-SAYLRQPKSVSKSEKMEYVEEVIKLLEMESYA-DAVVGVPGEGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred eeecccccCCCCCCHHHHHHH-HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhC-CCeeCCCCCCCCHHHhhHHHHHHHH
Confidence 9999963 334455554321 11111 11100 01234578899999997544 35555 7999999999999999
Q ss_pred ccCCC-eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHH-HHHhcCcCCCcEEEEEECC-eEEecCCCH
Q 048654 635 MSKPH-ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRL-ISRVCDDEERSEIWVVENG-TVSRFPGTF 706 (723)
Q Consensus 635 ~~~p~-lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~-~~~~~d~~~~drv~vl~~G-~i~~~~g~~ 706 (723)
+.+|+ ||||||||+|||..+...+.+.|+++ +.|||+++|+++. +...| |+|++|.+| +++ +.|++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~-----D~vl~L~~GG~iv-~~G~~ 988 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEF-----DRLLLLQKGGQTV-YFGDL 988 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhc-----CEEEEEcCCCEEE-EECCc
Confidence 99997 99999999999999999999999887 3599999999986 45677 499999997 987 45665
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=509.03 Aligned_cols=205 Identities=23% Similarity=0.308 Sum_probs=158.5
Q ss_pred eEEEEEEEEEcCC-----------CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CcceEEECCc--
Q 048654 495 LLQLIEVSFSYPN-----------REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP--TEGEVRRSQK-- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~-----------~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p--~~G~I~~~~~-- 559 (723)
.+.++||++.++. ....+|+|||+.|++|++++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5889999988742 123589999999999999999999999999999999999773 6899998763
Q ss_pred ------eeEEEEcccc--ccccCccccHHHHHHhhCCCCCC-CcHHHHHHHHHHhCCCCCCCCcCCC-----CCCCHHHH
Q 048654 560 ------LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEG-LSKQEAVRAKLGKFGLPSHNHLTPI-----AKLSGGQK 625 (723)
Q Consensus 560 ------~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gl~~~~~~~~i-----~~LSGGqk 625 (723)
..+||++|.. ...+++.++.........+.... ....+.+.++++.+||.+..+ +.+ ..||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~-~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-AIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhC-CccCCCCCCCcCHHHH
Confidence 2479999963 33445555532211111111100 012235788999999975443 443 58999999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHH-HHHHhcCcCCCcEEEEEEC-CeEE
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSR-LISRVCDDEERSEIWVVEN-GTVS 700 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~-~~~~~~d~~~~drv~vl~~-G~i~ 700 (723)
|||+||++|+.+|+||||||||+|||..+...+++.|+++ +.|||+++|+++ .+..+|| ++++|.+ |+++
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D-----~vllL~~gG~~v 1100 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-----ELLLMKRGGQVI 1100 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCC-----EEEEEcCCCEEE
Confidence 9999999999999999999999999999999999999887 369999999998 4677884 9999996 8986
Q ss_pred ecCCCH
Q 048654 701 RFPGTF 706 (723)
Q Consensus 701 ~~~g~~ 706 (723)
+.|+.
T Consensus 1101 -~~G~~ 1105 (1470)
T PLN03140 1101 -YSGPL 1105 (1470)
T ss_pred -EECCc
Confidence 45664
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=481.66 Aligned_cols=205 Identities=23% Similarity=0.299 Sum_probs=163.1
Q ss_pred CCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC-----------c
Q 048654 491 LTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ-----------K 559 (723)
Q Consensus 491 ~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~-----------~ 559 (723)
+...-|+++|++++|......+|+||||+|++||+|||||..|||||||+.+|.++..|.+|+|.+++ +
T Consensus 1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 34457999999999987666899999999999999999999999999999999999999999999887 3
Q ss_pred eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCC------cC----CCCCCCHHHHHHH
Q 048654 560 LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH------LT----PIAKLSGGQKARV 628 (723)
Q Consensus 560 ~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~------~~----~i~~LSGGqkqRv 628 (723)
.+++.+||++.-. -++..| -+......++++.++|+..+|..... +. --..+|-||||.|
T Consensus 1214 srlsIIPQdPvLFsGTvR~N---------LDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSGTVRFN---------LDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred hcCeeeCCCCceecCccccc---------cCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence 4688999985311 122222 11111123455666666555432111 11 2357999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH-cC-ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE-FT-GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~-~~-~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
+|||||+++++||+|||+|+++|+++-..|.+.|++ |+ .|||.|.|.++.+.++ |||+||++|+|++| |+|
T Consensus 1285 CLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~------DrVlVld~G~v~Ef-dsP 1357 (1381)
T KOG0054|consen 1285 CLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDS------DRVLVLDAGRVVEF-DSP 1357 (1381)
T ss_pred HHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhc------CeEEEeeCCeEeec-CCh
Confidence 999999999999999999999999999999999987 44 7999999999999853 69999999999988 677
Q ss_pred HHHHH
Q 048654 707 EEYKE 711 (723)
Q Consensus 707 ~~~~~ 711 (723)
.++.+
T Consensus 1358 ~~Ll~ 1362 (1381)
T KOG0054|consen 1358 AELLS 1362 (1381)
T ss_pred HHHHh
Confidence 77653
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-49 Score=416.76 Aligned_cols=423 Identities=26% Similarity=0.364 Sum_probs=275.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDG 267 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (723)
..+|+++||+|+||-||||-+++|+|...|.-|.. +. ..++ ..++..+- ..+++..+..+..- +..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~-----~~-pp~w-deVi~~Fr--GtELq~YF~~l~~g-~~r---- 162 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY-----ED-PPSW-DEVIKRFR--GTELQNYFKKLYEG-ELR---- 162 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC-----CC-CCCH-HHHHHHhh--hhHHHHHHHHHHcC-Ccc----
Confidence 46799999999999999999999999876643321 00 1111 11122111 12222222222100 000
Q ss_pred CCCCCchhhHHHHHHHHHH-HHH-hcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048654 268 EEDGDDANDAGEKLAELYE-KLQ-ILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345 (723)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLD 345 (723)
...-....+.+..++. ... .+..........++++.|+|. ...+|.+.+|||||-||++||.|++++.+++++|
T Consensus 163 ---~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FD 238 (591)
T COG1245 163 ---AVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDADVYFFD 238 (591)
T ss_pred ---eecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEc
Confidence 0000000111110000 000 000111123678899999997 4568999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChhhHHhhHHHHHHHHHHHHHH
Q 048654 346 EPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEI 422 (723)
Q Consensus 346 EPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 422 (723)
|||+.||...+...-+.++++ +++||+|.||+..+.-++|-|.++-.- .|-|.-+...+. .+..++....-
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~-----pg~YGvvs~p~s-vr~gIN~yL~G 312 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE-----PGVYGVVSKPKS-VRVGINEYLKG 312 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC-----CccceEeccchH-HHHHHHHHHhc
Confidence 999999999888777777765 579999999999999999999888632 122222211111 01111111000
Q ss_pred HHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCC-CC-CCeEEEEE
Q 048654 423 YEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTE-LT-PPLLQLIE 500 (723)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~~ 500 (723)
| .+....+.+.+.+.|...++.. .. ..+++..+
T Consensus 313 y---------------------------------------------l~~EN~R~R~~~I~F~~~~~~~~~~~~~lv~y~~ 347 (591)
T COG1245 313 Y---------------------------------------------LPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPD 347 (591)
T ss_pred c---------------------------------------------CchhcccccccceeeeccCcccccccceeeecch
Confidence 0 0011122233444554433321 12 45677777
Q ss_pred EEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHH
Q 048654 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPV 580 (723)
Q Consensus 501 ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~ 580 (723)
+++.|++ +.|.-=.=+|..||+++++||||-||||++++|+|.++|++|. ....+++|-||.....+. .++.
T Consensus 348 ~~k~~g~---F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~~~~--gtV~ 419 (591)
T COG1245 348 LKKTYGD---FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISPDYD--GTVE 419 (591)
T ss_pred heeecCc---eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecCCCC--CcHH
Confidence 8888863 2333333456788999999999999999999999999999998 556789999997644322 2322
Q ss_pred HHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHH
Q 048654 581 SYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD 660 (723)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~ 660 (723)
.++....+...+ ....-.+++.-|+|...+ .+++..|||||.|||+||.+|.++++|.|||||+++||.+.+-.+.+
T Consensus 420 ~~l~~~~~~~~~--~s~~~~ei~~pl~l~~i~-e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vak 496 (591)
T COG1245 420 DLLRSAIRSAFG--SSYFKTEIVKPLNLEDLL-ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAK 496 (591)
T ss_pred HHHHHhhhhhcc--cchhHHhhcCccchHHHH-hcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHH
Confidence 222221111111 112234567778887544 58899999999999999999999999999999999999999998888
Q ss_pred HHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEE
Q 048654 661 ALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVE 695 (723)
Q Consensus 661 ~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~ 695 (723)
.|+++ ..|.++|-||+.++.-++| |++|++
T Consensus 497 vIRR~~e~~~kta~vVdHDi~~~dyvsD-----r~ivF~ 530 (591)
T COG1245 497 VIRRFIENNEKTALVVDHDIYMIDYVSD-----RLIVFE 530 (591)
T ss_pred HHHHHHhhcCceEEEEecceehhhhhhc-----eEEEEe
Confidence 88876 3689999999999998884 999886
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-48 Score=376.92 Aligned_cols=221 Identities=27% Similarity=0.382 Sum_probs=180.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++||+..||+||||+|.+||+++||||||||||||||||+|+..+ .+|.|.+.++.+....
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~~~~--------- 70 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVGDKK--------- 70 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEeccchh---------
Confidence 58999999999999999999999999999999999999999999999988765 4556666555443211
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
+...+++.++++.+.... ++...+.+++....-.......+++++++.++|+++||.+ ..+.+|.+||||
T Consensus 71 ---~~~~~R~~vGmVFQ~fnL------FPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~-ka~~yP~qLSGG 140 (240)
T COG1126 71 ---DILKLRRKVGMVFQQFNL------FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD-KADAYPAQLSGG 140 (240)
T ss_pred ---hHHHHHHhcCeecccccc------cccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-hhhhCccccCcH
Confidence 334566777765432211 2234555555554444555667888999999999999985 468999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||||||||+++|+++|+|||||+|||+.+..+.+.++++ |.|.|+|||++.|+.++||||++|++|+++.. |+
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~-g~ 219 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE-GP 219 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe-cC
Confidence 999999999999999999999999999999999888887755 78999999999999999999999999998754 67
Q ss_pred hhhHHh
Q 048654 402 FDDFES 407 (723)
Q Consensus 402 ~~~~~~ 407 (723)
++++..
T Consensus 220 p~~~f~ 225 (240)
T COG1126 220 PEEFFD 225 (240)
T ss_pred HHHHhc
Confidence 776654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=374.95 Aligned_cols=208 Identities=26% Similarity=0.451 Sum_probs=175.0
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------ee
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ 561 (723)
++|+++||+++|++. .+|++|||+|.+||+++|+||+|||||||||||.||.+|++|+|.+++. .+
T Consensus 1 ~mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 1 MMIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred CeEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 479999999999864 5899999999999999999999999999999999999999999999873 25
Q ss_pred EEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
+|++||+| ++++++-+|........... ......+.+.++|+++||.+..+.. +.+|||||||||||||||+.+|+
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~-~k~eA~~~A~~lL~~VGL~~ka~~y-P~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKL-SKAEAREKALELLEKVGLADKADAY-PAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCC-CHHHHHHHHHHHHHHcCchhhhhhC-ccccCcHHHHHHHHHHHHcCCCC
Confidence 89999976 45666666654332221111 0112345678899999998776654 48999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
++|+|||||+|||+....+.+.++++. .|+|+|||++.|+.++|| ||++|++|+|++ .|+++++..
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vad-----rviFmd~G~iie-~g~p~~~f~ 225 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVAD-----RVIFMDQGKIIE-EGPPEEFFD 225 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhh-----eEEEeeCCEEEE-ecCHHHHhc
Confidence 999999999999999999999988874 599999999999999995 999999999975 578887753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=374.22 Aligned_cols=212 Identities=34% Similarity=0.479 Sum_probs=177.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
+|+++|++++|++ .++|+|+||+|.+|++++|+||||||||||||+|+|+++|.+|+|+++++ ..++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 6899999999985 46899999999999999999999999999999999999999999999884 2689
Q ss_pred EEccccc--cccCccccHHHHHHhhCCCCC-----CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 564 RYSQHFV--DLLTMEETPVSYLLRLHPDQE-----GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 564 ~~~q~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
|++|... ..+++.+.+. +..+|... +..+.+.+..+|+.+|+.+.. .+++.+|||||||||.|||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~---~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-~r~~~~LSGGerQrv~iArALaQ 155 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVL---LGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-DRPVDELSGGERQRVLIARALAQ 155 (258)
T ss_pred EeccCCCCCCCcEEeehHh---hcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-cCcccccChhHHHHHHHHHHHhc
Confidence 9999753 2344444321 22222211 112345688899999998654 57899999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH-HHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE-EYKE 711 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~-~~~~ 711 (723)
+|+||||||||++||+.++..++++|+++. .|||+|+||++++.++|| ++++|++|+|+. .|+++ .+.+
T Consensus 156 ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad-----~~i~lk~G~i~a-~G~p~evlT~ 229 (258)
T COG1120 156 ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD-----HLILLKDGKIVA-QGTPEEVLTE 229 (258)
T ss_pred CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEEECCeEEe-ecCcchhcCH
Confidence 999999999999999999999999998875 589999999999999995 999999999985 57765 4566
Q ss_pred HHHHHHH
Q 048654 712 DLQREIK 718 (723)
Q Consensus 712 ~~~~~~~ 718 (723)
+.+++++
T Consensus 230 e~l~~Vy 236 (258)
T COG1120 230 ENLREVY 236 (258)
T ss_pred HHHHHHh
Confidence 7777664
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=368.43 Aligned_cols=209 Identities=32% Similarity=0.460 Sum_probs=171.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------eeEEE
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------LRIGR 564 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------~~ig~ 564 (723)
.++|+++|+++.|++. ++|+||||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.++ .+|||
T Consensus 2 ~~~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 2 MPMIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred CcEEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 3579999999999864 4999999999999999999999999999999999999999999997664 47999
Q ss_pred EccccccccCccccHHHHHHh-hCCCC-----CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 565 YSQHFVDLLTMEETPVSYLLR-LHPDQ-----EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
+||...-...++-++...+.. .+... ....+.+.+.++|+++|+.+. .++++++|||||+|||.|||||+++|
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-~~r~i~~LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-RDRQIGELSGGQKQRVLLARALAQNP 158 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-hCCcccccCcHHHHHHHHHHHhccCC
Confidence 999652223333343333221 11111 111235779999999999855 45899999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+||||||||+|+|+.+...|.++|+++. .||||||||+..+..+|| +|+.|+ +++. +.|+++++..
T Consensus 159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D-----~vi~Ln-~~~~-~~G~~~~~~~ 227 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFD-----RVICLN-RHLI-ASGPPEEVLT 227 (254)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCC-----EEEEEc-CeeE-eccChhhccC
Confidence 9999999999999999999999998874 599999999999999995 899995 5564 4588877544
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=357.56 Aligned_cols=218 Identities=27% Similarity=0.358 Sum_probs=179.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||||.|+++.+++|+||+|++|++++|||||||||||+||+|+++..| ++|+|.+.+.++...+.
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~~~d~-------- 70 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDISDLDP-------- 70 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecccCCH--------
Confidence 58999999999999999999999999999999999999999999999988654 56677777777654332
Q ss_pred hhHHHHHHHHHHHhhh-cCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc-cccCCCCCCCC
Q 048654 245 AHEELVKLREEVASLQ-NSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK-EMQGRPTKSFS 322 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LS 322 (723)
..++..++|+- +..+ ++...+.+++..+. .+..+.....++++.++|+.+||++ .+.+|++++||
T Consensus 71 -----~~LRr~IGYviQqigL-------FPh~Tv~eNIa~VP-~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLS 137 (309)
T COG1125 71 -----VELRRKIGYVIQQIGL-------FPHLTVAENIATVP-KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELS 137 (309)
T ss_pred -----HHHHHhhhhhhhhccc-------CCCccHHHHHHhhh-hhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcC
Confidence 24555666552 2211 12334445444432 3445566778899999999999975 57899999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||.+||||+.+|+||||||||++|||.++..|++.+.+ +++|||+||||++++..++|||++|++|+++.|
T Consensus 138 GGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~ 217 (309)
T COG1125 138 GGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY 217 (309)
T ss_pred cchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe
Confidence 9999999999999999999999999999999999999887754 478999999999999999999999999999887
Q ss_pred cCChhhHH
Q 048654 399 RGNFDDFE 406 (723)
Q Consensus 399 ~g~~~~~~ 406 (723)
++++++.
T Consensus 218 -~~P~~il 224 (309)
T COG1125 218 -DTPDEIL 224 (309)
T ss_pred -CCHHHHH
Confidence 5655553
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=363.82 Aligned_cols=220 Identities=25% Similarity=0.385 Sum_probs=179.8
Q ss_pred ceEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAARG-----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~-----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
+|++++|+|.|.. .++|+||||+|++|+++||||.||||||||+|||+++.. |.+|.|.+.++++...+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~-- 76 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEA-- 76 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChH--
Confidence 5899999999976 479999999999999999999999999999999998765 4566777777776554332
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
.+..+++.++++.+.... .....+.++++..++. ......+.++|+.++|+.+||+ +..++++.
T Consensus 77 --------~Lr~~R~~IGMIFQhFnL------LssrTV~~NvA~PLei-ag~~k~ei~~RV~elLelVgL~-dk~~~yP~ 140 (339)
T COG1135 77 --------ELRQLRQKIGMIFQHFNL------LSSRTVFENVAFPLEL-AGVPKAEIKQRVAELLELVGLS-DKADRYPA 140 (339)
T ss_pred --------HHHHHHhhccEEeccccc------cccchHHhhhhhhHhh-cCCCHHHHHHHHHHHHHHcCCh-hhhccCch
Confidence 345567788776443211 1122344555544432 3355678899999999999998 56789999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+|||||||||+|||||+.+|+|||+|||||+|||.+...+.++|++ ++.||++|||.|+.+..+|||+.+|++|++
T Consensus 141 qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~l 220 (339)
T COG1135 141 QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220 (339)
T ss_pred hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEE
Confidence 9999999999999999999999999999999999999999998875 478999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+.. |+..+.
T Consensus 221 vE~-G~v~~v 229 (339)
T COG1135 221 VEE-GTVSEV 229 (339)
T ss_pred EEe-ccHHHh
Confidence 864 665544
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=363.25 Aligned_cols=222 Identities=32% Similarity=0.388 Sum_probs=171.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++||+++|+++++|+|+||+|++|++++|+||||||||||||+|+|+..| ..|.|.+.+..+......
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~~~~~k------- 72 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIASLSPK------- 72 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchhhcCHH-------
Confidence 58999999999999999999999999999999999999999999999997654 566777777665443322
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.+.+.++++++...........+....++ ..+..+......++.+.+.++|+.+|+. ++.+|++.+||||
T Consensus 73 ------elAk~ia~vpQ~~~~~~~~tV~d~V~~GR---~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGG 142 (258)
T COG1120 73 ------ELAKKLAYVPQSPSAPFGLTVYELVLLGR---YPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGG 142 (258)
T ss_pred ------HHhhhEEEeccCCCCCCCcEEeehHhhcC---CcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChh
Confidence 23445566655432211111111111111 0111111112445566899999999997 4668999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||.|||||+++|+||||||||++||..++..++++++++ +.|||+|.||++++..+||++++|++|+++. .|
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a-~G 221 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA-QG 221 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe-ec
Confidence 999999999999999999999999999999999999999865 4799999999999999999999999999975 57
Q ss_pred ChhhHH
Q 048654 401 NFDDFE 406 (723)
Q Consensus 401 ~~~~~~ 406 (723)
.+.+..
T Consensus 222 ~p~evl 227 (258)
T COG1120 222 TPEEVL 227 (258)
T ss_pred Ccchhc
Confidence 766543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=352.59 Aligned_cols=210 Identities=33% Similarity=0.441 Sum_probs=177.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
.++|++++|+++|+++ .+|+||||+|++||+++|+||+|||||||||+|.|+++|++|+|++.+.
T Consensus 6 ~~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 5789999999999874 5899999999999999999999999999999999999999999998763
Q ss_pred -eeEEEEccc--cccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQH--FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
.++|++||+ +++.+++.+|+.. .++.+........++.+...|+.+||.....+..+++|||||++||+||||++.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVaf-plre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAF-PLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HhheeEEeeccccccccchhHhhhe-ehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 358999996 4667788777433 233332221111234466678999999874445669999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+|+||++||||+||||.+...+-++|++++ .|+||||||++.+..+|| ||+++.+|+|. +.|+++++.+
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~D-----rv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIAD-----RVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhc-----eEEEEeCCEEE-EeCCHHHHHh
Confidence 999999999999999999999888887764 699999999999999995 99999999997 6799998765
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=410.75 Aligned_cols=336 Identities=26% Similarity=0.326 Sum_probs=229.8
Q ss_pred HHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEE
Q 048654 297 EAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLV 371 (723)
Q Consensus 297 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVI 371 (723)
..++. +|+.+||.....++++.+|||||+|||+||+||+.+| +||||||||++||+..+.+|.++|+++ +.|||
T Consensus 467 ~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVI 545 (943)
T PRK00349 467 RERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLI 545 (943)
T ss_pred HHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34453 7888899643258999999999999999999999997 999999999999999999999998765 67999
Q ss_pred EEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHH
Q 048654 372 VVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDR 445 (723)
Q Consensus 372 ivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (723)
+|+||++++. .||+|++| ++|+++ +.|+++++..... .+...+ +.
T Consensus 546 vVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~~~~~~----~l~~~~---------------------l~-- 596 (943)
T PRK00349 546 VVEHDEDTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEIMKNPN----SLTGQY---------------------LS-- 596 (943)
T ss_pred EEeCCHHHHH-hCCEEEEeccccCCCCCEEe-eccCHHHHhcChh----heeehh---------------------hc--
Confidence 9999999987 59999999 899985 5687766532100 000000 00
Q ss_pred HHHHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcE
Q 048654 446 AKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTR 525 (723)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~ 525 (723)
.. . ....+.. + .....+.|+++|++. ..|+|+||+|..|++
T Consensus 597 -------------~~-~------~~~~~~~----------~--~~~~~~~L~v~~l~~-------~~L~~isl~Ip~Gei 637 (943)
T PRK00349 597 -------------GK-K------KIEVPKE----------R--RKGNGKFLKLKGARE-------NNLKNVDVEIPLGKF 637 (943)
T ss_pred -------------cc-c------ccccccc----------c--cCCCcceEEecCCcc-------CCcCceEEEEeCCCE
Confidence 00 0 0000000 0 001235788998862 148999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHH---------cCCCCCcce------------EEECCc-------e-----------------
Q 048654 526 VAIVGPNGAGKSTLLNLLA---------GDLSPTEGE------------VRRSQK-------L----------------- 560 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~---------Gl~~p~~G~------------I~~~~~-------~----------------- 560 (723)
++|+|+||||||||++.+. +...+..+. |.++.. .
T Consensus 638 vgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa 717 (943)
T PRK00349 638 TCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFA 717 (943)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhc
Confidence 9999999999999998763 111111100 111000 0
Q ss_pred ------eEEEEcccccccc----------------------C--cc--------------------ccH-------HHHH
Q 048654 561 ------RIGRYSQHFVDLL----------------------T--ME--------------------ETP-------VSYL 583 (723)
Q Consensus 561 ------~ig~~~q~~~~~~----------------------~--~~--------------------~~~-------~~~~ 583 (723)
..||.++.|..+. . .. .+. +...
T Consensus 718 ~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~ 797 (943)
T PRK00349 718 GTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEA 797 (943)
T ss_pred cCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccccccceEEEECCCCHHHHhcCcHHHH
Confidence 0111111110000 0 00 000 0000
Q ss_pred HhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC---CeEEeccCCCCCCHHHHHHHHH
Q 048654 584 LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP---HILLLDEPTNHLDMQSIDALAD 660 (723)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p---~lLlLDEPT~~LD~~s~~~l~~ 660 (723)
+.++... .......+.|..+||......+++.+|||||+|||.||++|+.+| +|+||||||+|||+..+..|.+
T Consensus 798 l~~f~~~---~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~ 874 (943)
T PRK00349 798 LEFFEAI---PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE 874 (943)
T ss_pred HHHHHhc---hhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH
Confidence 1111000 011223467888999754345678999999999999999999999 9999999999999999999999
Q ss_pred HHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHHH
Q 048654 661 ALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 661 ~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~~ 711 (723)
+|+++ +.|||+||||++++. .| |+|++| .+|+|+ +.|+++++..
T Consensus 875 ~L~~l~~~G~TVIiitH~~~~i~-~a-----D~ii~Lgp~~G~~~G~Iv-~~Gt~~el~~ 927 (943)
T PRK00349 875 VLHRLVDKGNTVVVIEHNLDVIK-TA-----DWIIDLGPEGGDGGGEIV-ATGTPEEVAK 927 (943)
T ss_pred HHHHHHhCCCEEEEEecCHHHHH-hC-----CEEEEecCCcCCCCCEEE-EeCCHHHHHh
Confidence 99876 359999999999985 67 499999 689997 5688887653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=352.16 Aligned_cols=217 Identities=30% Similarity=0.438 Sum_probs=181.5
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC--------------c
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ--------------K 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~--------------~ 559 (723)
.+|+++||++.|+++ ..+|++|||+|++||+|+||||+|||||||||+|.|+..|++|+|.+++ +
T Consensus 2 ~~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 579999999999754 4689999999999999999999999999999999999999999999876 2
Q ss_pred eeEEEEccccc--cccCccccHHHHHHh-------hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHH
Q 048654 560 LRIGRYSQHFV--DLLTMEETPVSYLLR-------LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 ~~ig~~~q~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~l 630 (723)
.++|+++|++. ..+++.+|++...+. ++.. ....+...+-++|+++||.+... ++..+|||||||||+|
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfgl-fsk~dk~~Al~aLervgi~~~A~-qra~~LSGGQQQRVaI 158 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL-FSKEDKAQALDALERVGILDKAY-QRASTLSGGQQQRVAI 158 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCC-CCHHHHHHHHHHHHHcCcHHHHH-HHhccCCcchhHHHHH
Confidence 36999999763 333333343222111 1111 11123455778999999986554 6779999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
||||+++|+|||.|||+++|||.+.+.+++.|++.+ .|||+..|+++++.++|+ ||+-|++|+|+ |+|++
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~-----Riigl~~G~iv-fDg~~ 232 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYAD-----RIIGLKAGRIV-FDGPA 232 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHh-----hheEecCCcEE-EeCCh
Confidence 999999999999999999999999999999998764 699999999999999995 99999999997 89999
Q ss_pred HHHHHHHHHHHHh
Q 048654 707 EEYKEDLQREIKA 719 (723)
Q Consensus 707 ~~~~~~~~~~~~~ 719 (723)
.++.++.+.+++.
T Consensus 233 ~el~~~~~~~iYg 245 (258)
T COG3638 233 SELTDEALDEIYG 245 (258)
T ss_pred hhhhHHHHHHHhc
Confidence 9999988888865
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=363.42 Aligned_cols=207 Identities=32% Similarity=0.443 Sum_probs=171.5
Q ss_pred eEEEEEEEEEcCCC---cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 495 LLQLIEVSFSYPNR---EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~---~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
||++++|++.|+.+ ...+|+||||+|++||++||||.+|||||||+|+|.++.+|++|+|.+++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 68999999999862 235899999999999999999999999999999999999999999998872
Q ss_pred --eeEEEEcccccc--ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 560 --LRIGRYSQHFVD--LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 560 --~~ig~~~q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
.+||++||+|.- ..++.+|+ .+.+..... ......+++.++|+.+||.+... +.+.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~Nv-A~PLeiag~-~k~ei~~RV~elLelVgL~dk~~-~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENV-AFPLELAGV-PKAEIKQRVAELLELVGLSDKAD-RYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEeccccccccchHHhhh-hhhHhhcCC-CHHHHHHHHHHHHHHcCChhhhc-cCchhcCcchhhHHHHHHHHh
Confidence 369999998742 23444442 222222211 11123567889999999997665 455899999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
.+|+|||+|||||+|||++...|+++|++.+ .||++|||.|+.+.++|| ||.||++|+|++ .|+..++.
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~-----rVavm~~G~lvE-~G~v~~vF 230 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICD-----RVAVLDQGRLVE-EGTVSEVF 230 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhh-----hheEeeCCEEEE-eccHHHhh
Confidence 9999999999999999999999999998764 699999999999999995 999999999986 47666543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=347.38 Aligned_cols=226 Identities=24% Similarity=0.325 Sum_probs=183.6
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
...|++++|+++||++.||+||||+|++||+++|+||||||||||||+|.|+..| ..|+|.+.+.++.....
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i~~ls~------ 77 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDIPQLSE------ 77 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcchhccCH------
Confidence 4579999999999999999999999999999999999999999999999998765 45666777766554332
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
.+...++..++.+.+.... +....+.++++..+.....+.....++.+..-|+.+||.....+.++++||
T Consensus 78 ----~~~~~ir~r~GvlFQ~gAL------FssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELS 147 (263)
T COG1127 78 ----EELYEIRKRMGVLFQQGAL------FSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELS 147 (263)
T ss_pred ----HHHHHHHhheeEEeecccc------ccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhc
Confidence 2334566666665443221 112344555555444444556667778888899999998765789999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||++|++|||||+.+|+||++||||+||||.+...+.++|+++ +.|+|+||||++.+..+||||++|.+|+|. +
T Consensus 148 GGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~ 226 (263)
T COG1127 148 GGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-A 226 (263)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-E
Confidence 99999999999999999999999999999999988887777654 679999999999999999999999999996 5
Q ss_pred cCChhhHHh
Q 048654 399 RGNFDDFES 407 (723)
Q Consensus 399 ~g~~~~~~~ 407 (723)
.|+++++..
T Consensus 227 ~Gt~~el~~ 235 (263)
T COG1127 227 EGTPEELLA 235 (263)
T ss_pred eCCHHHHHh
Confidence 699877643
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=421.60 Aligned_cols=330 Identities=24% Similarity=0.370 Sum_probs=225.0
Q ss_pred HHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCH
Q 048654 303 ILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDR 377 (723)
Q Consensus 303 ~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl 377 (723)
+|..+||.....++++.+|||||+|||+||+||+.+| +||||||||++||+..+.+|.++|+++ +.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4556788643257999999999999999999999999 899999999999999999999988865 67999999999
Q ss_pred HHHHhhCCEEEEEe------CCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHH
Q 048654 378 DFLNTVCTEIIHLH------DQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAA 451 (723)
Q Consensus 378 ~~l~~iad~Ii~L~------~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (723)
++ ..+||+|++|. +|+++ +.|+++++...... +...+ . +
T Consensus 539 ~v-i~~aDrVi~L~pGag~~gG~Iv-~~G~~~eil~~~~~----l~~~~----------l--~----------------- 583 (1809)
T PRK00635 539 QM-ISLADRIIDIGPGAGIFGGEVL-FNGSPREFLAKSDS----LTAKY----------L--R----------------- 583 (1809)
T ss_pred HH-HHhCCEEEEEcCCcccCCCEEE-EecCHHHHhhChHH----HHHHH----------h--c-----------------
Confidence 95 57899999996 67875 56777665321000 00000 0 0
Q ss_pred HHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcC
Q 048654 452 KEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGP 531 (723)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGp 531 (723)
. .. ... .+.. .....+.|++++++. ..|+++||+|+.|++++|+|+
T Consensus 584 -------~--~~----~~~-~~~~-------------~~~~~~~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~ 629 (1809)
T PRK00635 584 -------Q--EL----TIP-IPEK-------------RTNSLGTLTLSKATK-------HNLKDLTISLPLGRLTVVTGV 629 (1809)
T ss_pred -------C--cc----ccc-Cccc-------------ccCCCCeEEEecccc-------CCccceEEEEcCCcEEEEEcC
Confidence 0 00 000 0000 000124688888863 158999999999999999999
Q ss_pred CCCcHHHHHH---------HHHcCCCCCc----ce--------------------EEECC-----c---------eeEE-
Q 048654 532 NGAGKSTLLN---------LLAGDLSPTE----GE--------------------VRRSQ-----K---------LRIG- 563 (723)
Q Consensus 532 NGsGKSTLlk---------~L~Gl~~p~~----G~--------------------I~~~~-----~---------~~ig- 563 (723)
||||||||++ .|.|...+.. +. +++.+ + ...|
T Consensus 630 nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~ 709 (1809)
T PRK00635 630 SGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGL 709 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCC
Confidence 9999999999 5666543211 11 21000 0 0000
Q ss_pred ----EEccc---------------c---ccccCc------------------cccHHHHH-------HhhCCCCCCCcHH
Q 048654 564 ----RYSQH---------------F---VDLLTM------------------EETPVSYL-------LRLHPDQEGLSKQ 596 (723)
Q Consensus 564 ----~~~q~---------------~---~~~~~~------------------~~~~~~~~-------~~~~~~~~~~~~~ 596 (723)
+.++. + ...+.. ..++.+.+ ..++... ....
T Consensus 710 ~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~--~~i~ 787 (1809)
T PRK00635 710 TKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDE--PSIH 787 (1809)
T ss_pred CcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccCh--HHHH
Confidence 11110 0 000000 00000000 0000000 0012
Q ss_pred HHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc---cCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEE
Q 048654 597 EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM---SKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVV 670 (723)
Q Consensus 597 ~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~---~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVI 670 (723)
..+ .+|+.+||......+++.+|||||+|||+||++|+ .+|+||||||||+|||+.++..|.++|.++ +.|||
T Consensus 788 ~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVI 866 (1809)
T PRK00635 788 EKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866 (1809)
T ss_pred HHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 234 57888999754235678999999999999999997 699999999999999999999999999876 35899
Q ss_pred EEecCHHHHHHhcCcCCCcEEEEEE------CCeEEecCCCHHHHHH
Q 048654 671 LVSHDSRLISRVCDDEERSEIWVVE------NGTVSRFPGTFEEYKE 711 (723)
Q Consensus 671 ivSHD~~~~~~~~d~~~~drv~vl~------~G~i~~~~g~~~~~~~ 711 (723)
+||||++++ .+|| +|++|. +|+++ ..|+++++..
T Consensus 867 iIsHdl~~i-~~aD-----rVi~L~p~gg~~~G~iv-~~Gtpeel~~ 906 (1809)
T PRK00635 867 IIEHNMHVV-KVAD-----YVLELGPEGGNLGGYLL-ASCSPEELIH 906 (1809)
T ss_pred EEeCCHHHH-HhCC-----EEEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence 999999999 7884 999996 78887 5689888753
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=350.80 Aligned_cols=196 Identities=34% Similarity=0.458 Sum_probs=162.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------eeEEEEcc
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------LRIGRYSQ 567 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------~~ig~~~q 567 (723)
.++.++++++.|++ ..+|+||||+|.+||+++|+||+|||||||||+|+|+.+|++|+|.+.++ ..++|++|
T Consensus 2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 46899999999986 46899999999999999999999999999999999999999999998775 36899999
Q ss_pred cc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEecc
Q 048654 568 HF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645 (723)
Q Consensus 568 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDE 645 (723)
+. .+..++.+|+...+ .... .......+.+.++|+.+||.+.... .+.+|||||||||+|||||+.+|+||||||
T Consensus 80 ~~~LlPW~Tv~~NV~l~l-~~~~-~~~~e~~~~a~~~L~~VgL~~~~~~-~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 80 EDALLPWLTVLDNVALGL-ELRG-KSKAEARERAKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred cCcccchhhHHhhheehh-hccc-cchHhHHHHHHHHHHHcCCcchhhc-CccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 75 34455555532221 1111 1111234578999999999887664 559999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC--CeE
Q 048654 646 PTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN--GTV 699 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~--G~i 699 (723)
|+++||..++..+.+.|.++ +.|||+||||.+++..++| ||++|.+ |+|
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~Lsd-----Rivvl~~~P~~i 211 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLAD-----RVVVLSNRPGRI 211 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhC-----EEEEecCCCcce
Confidence 99999999988888777654 5799999999999999985 9999998 445
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=351.60 Aligned_cols=204 Identities=28% Similarity=0.440 Sum_probs=174.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
||+++||++.|++. .+++|+||+|+.||+++|+||+||||||+||+|.+++.|++|+|++++. .+||
T Consensus 1 MI~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 68999999999854 5899999999999999999999999999999999999999999998874 3699
Q ss_pred EEccc--cccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCC-CCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 564 RYSQH--FVDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPS-HNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 564 ~~~q~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~-~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
|+-|. +++++++.+|.... |...++. ..+++.++|..+||+. ...++.+.+|||||||||.+||||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-----P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-----PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-----hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 99986 46677777764321 2222222 3456889999999975 355577799999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+|||+||||++|||.++..+.+.+.++ +.|||+||||++++.+++| ||++|++|+|+-| ++|+++..
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLad-----ri~vm~~G~i~Q~-~~P~~il~ 225 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLAD-----RIAVMDAGEIVQY-DTPDEILA 225 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhc-----eEEEecCCeEEEe-CCHHHHHh
Confidence 9999999999999999999988887654 5799999999999999995 9999999999866 78777643
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=347.83 Aligned_cols=203 Identities=31% Similarity=0.446 Sum_probs=168.6
Q ss_pred CeEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 494 PLLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
++|+++|+++.|+.+. ..+|++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++++
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5899999999998642 14899999999999999999999999999999999999999999999883
Q ss_pred eeEEEEccccccccCccccHHHHHHhhCCCCCCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 560 LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 560 ~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
..+.++||++...+....++-..+.... ...+. ..++++.++|+.+||+.....+.+.+|||||+|||||||||+.+|
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl-~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPL-RPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhh-ccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 2467899987655544333222111111 11121 134558999999999877666777999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEec
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~ 702 (723)
++|||||||++||+..+..++++|.++. -|+|+||||+..+..+|| ||+||++|+|++.
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd-----Ri~Vm~~G~ivE~ 223 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD-----RIAVMDNGQIVEI 223 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh-----heeeeeCCeEEEe
Confidence 9999999999999999999999997764 599999999999999995 9999999999874
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=346.07 Aligned_cols=198 Identities=34% Similarity=0.491 Sum_probs=164.3
Q ss_pred eEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+++++||++.|+... ..+|++|||+|++||+++|+||+||||||||++|.|+.+|++|.|++.+.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 467999999996432 35899999999999999999999999999999999999999999988762
Q ss_pred --eeEEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 560 --LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 560 --~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
..+||++|.+ .+.+++.+|+...+ .+.....+ .....+..+++.+||.+...++++.+|||||||||+|||||+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl-~~~~~~~~-~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPL-LIAGKSAG-RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHH-HHcCCChh-HHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 2599999975 45566666643221 11111111 235667889999999876665677999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
.+|+|||+||||.+||..+.+.++++|.++. .||||||||...+. +| ||++.|.+|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~-----dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YA-----DRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hC-----CEEEEEeCCeee
Confidence 9999999999999999999999999998873 59999999999886 67 599999999964
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=344.86 Aligned_cols=219 Identities=28% Similarity=0.454 Sum_probs=169.4
Q ss_pred cceEEEeEEEEeCCee----eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 164 KDITIDNFSVAARGKE----LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~----vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
++|+++|+++.|++.. +|++|||+|.+||++||||+||||||||+++|+|+..| ..|+|.+.+.......+..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~~~~~~~- 78 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLAPKKRAK- 78 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccCccccch-
Confidence 4699999999999877 99999999999999999999999999999999998765 5667777776554332211
Q ss_pred HHHHHhhHHHHHHHHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 240 QAVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
..+..+.++ |+.... ..+...+.+-+. +.+...+....+.++.++|+.+|+...+.+|++
T Consensus 79 -----------~~~~~VQmVFQDp~~S-----LnP~~tv~~~l~---Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P 139 (252)
T COG1124 79 -----------AFYRPVQMVFQDPYSS-----LNPRRTVGRILS---EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP 139 (252)
T ss_pred -----------hhccceeEEecCCccc-----cCcchhHHHHHh---hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 111222222 221111 111122233222 223323345566679999999999998999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+|||||+|||||||||+.+|++|||||||++||+..+..++++|.+. +.|+|+||||+..+..+||||+||++|+
T Consensus 140 ~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ 219 (252)
T COG1124 140 HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQ 219 (252)
T ss_pred hhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCe
Confidence 999999999999999999999999999999999999999999988754 5699999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++.. ++..++
T Consensus 220 ivE~-~~~~~l 229 (252)
T COG1124 220 IVEI-GPTEEL 229 (252)
T ss_pred EEEe-echhhh
Confidence 9854 444443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=347.43 Aligned_cols=200 Identities=30% Similarity=0.417 Sum_probs=155.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.+.++++++.|++..+|+||||+|.+||+++||||||||||||||+|+|+..| ..|+|.+.++.+.+....
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v~~p~~~------- 73 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPVTGPGPD------- 73 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCcccCCCCCC-------
Confidence 58999999999999999999999999999999999999999999999998765 555666666655332211
Q ss_pred hhHHHHHHHHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 245 AHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
++++ |+..+. +...+.+++...... ......+..+++.++|+.+||.. ..+++|++|||
T Consensus 74 -----------~~~vFQ~~~Ll-------PW~Tv~~NV~l~l~~-~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSG 133 (248)
T COG1116 74 -----------IGYVFQEDALL-------PWLTVLDNVALGLEL-RGKSKAEARERAKELLELVGLAG-FEDKYPHQLSG 133 (248)
T ss_pred -----------EEEEeccCccc-------chhhHHhhheehhhc-cccchHhHHHHHHHHHHHcCCcc-hhhcCccccCh
Confidence 0111 111110 011222222211111 11234556679999999999974 56899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
||||||+|||||+.+|+||||||||++||..++..+++.|.+ .+.|||+||||++++..++|||++|.++
T Consensus 134 GMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 134 GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999887777654 4689999999999999999999999984
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=397.88 Aligned_cols=330 Identities=25% Similarity=0.322 Sum_probs=222.0
Q ss_pred HHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCC
Q 048654 302 KILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHD 376 (723)
Q Consensus 302 ~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHd 376 (723)
++|..+||.....++++.+|||||+|||+||++|+.+| .||||||||++||+..+.+|.++|+++ +.|||+|+||
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 34677788643257999999999999999999999986 899999999999999999999998765 6799999999
Q ss_pred HHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHH
Q 048654 377 RDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAA 450 (723)
Q Consensus 377 l~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (723)
++++. +||+|++| ++|+|+ +.|+++++..... .+... .+.
T Consensus 549 ~~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el~~~~~----~lt~~---------------------~l~------- 594 (924)
T TIGR00630 549 EETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEILANPD----SLTGQ---------------------YLS------- 594 (924)
T ss_pred HHHHh-hCCEEEEecccccCCCCEEe-eccCHHHHhcCch----heeee---------------------ccc-------
Confidence 99997 89999999 899986 5577655421100 00000 000
Q ss_pred HHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEc
Q 048654 451 AKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVG 530 (723)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvG 530 (723)
. . .....+.. ......++|+++|++. ..|+|+||+|+.|++++|+|
T Consensus 595 --------~--~-----~~~~~~~~------------~~~~~~~~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtG 640 (924)
T TIGR00630 595 --------G--K-----KKIEVPKE------------RRPGNGKFLTLKGARE-------NNLKNITVSIPLGLFTCITG 640 (924)
T ss_pred --------c--c-----cccccccc------------ccCCCcceEEEEeCcc-------CCcCceEEEEeCCCEEEEEC
Confidence 0 0 00000000 0001234789999873 14899999999999999999
Q ss_pred CCCCcHHHHHH-HHH--------c-CCCCC-cce----------EEECCc-------e----------------------
Q 048654 531 PNGAGKSTLLN-LLA--------G-DLSPT-EGE----------VRRSQK-------L---------------------- 560 (723)
Q Consensus 531 pNGsGKSTLlk-~L~--------G-l~~p~-~G~----------I~~~~~-------~---------------------- 560 (723)
+||||||||++ +|. + ..+|. ... |.++.+ .
T Consensus 641 vsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a 720 (924)
T TIGR00630 641 VSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEA 720 (924)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCcc
Confidence 99999999998 331 1 11110 011 111100 0
Q ss_pred -----------------------eEEEEccc--cccccCc----------c----------ccH-------HHHHHhhCC
Q 048654 561 -----------------------RIGRYSQH--FVDLLTM----------E----------ETP-------VSYLLRLHP 588 (723)
Q Consensus 561 -----------------------~ig~~~q~--~~~~~~~----------~----------~~~-------~~~~~~~~~ 588 (723)
..|++..+ |.....+ . .+. +.....++.
T Consensus 721 ~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~ 800 (924)
T TIGR00630 721 KARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFE 800 (924)
T ss_pred ccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHH
Confidence 00110000 0000000 0 000 000000000
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc---CCCeEEeccCCCCCCHHHHHHHHHHHHHc
Q 048654 589 DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS---KPHILLLDEPTNHLDMQSIDALADALDEF 665 (723)
Q Consensus 589 ~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~---~p~lLlLDEPT~~LD~~s~~~l~~~L~~~ 665 (723)
.. ........+|..|||......+++.+|||||+|||.||++|+. +|+||||||||+|||+.++..|.++|.++
T Consensus 801 ~~---~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l 877 (924)
T TIGR00630 801 AV---PSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL 877 (924)
T ss_pred hc---cchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 00 0111234678889997543457789999999999999999997 59999999999999999999999999887
Q ss_pred ---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHH
Q 048654 666 ---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEY 709 (723)
Q Consensus 666 ---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~ 709 (723)
+.|||+||||++++. .| |+|++| ++|+|+ +.|+++++
T Consensus 878 ~~~G~TVIvi~H~~~~i~-~a-----D~ii~Lgp~~G~~gG~iv-~~G~~~~l 923 (924)
T TIGR00630 878 VDQGNTVVVIEHNLDVIK-TA-----DYIIDLGPEGGDGGGTIV-ASGTPEEV 923 (924)
T ss_pred HhCCCEEEEEeCCHHHHH-hC-----CEEEEecCCccCCCCEEE-EeCCHHHh
Confidence 369999999999985 57 499999 689997 56887654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=348.09 Aligned_cols=219 Identities=26% Similarity=0.373 Sum_probs=161.9
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+.|+++|+++.|++.++|+||||+|++|++++||||||||||||+|+|+|+..|..| +|.+.+........
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G--~i~~~g~~~~~~~~------- 73 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG--EIKIFGKPVRKRRK------- 73 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcc--eEEEcccccccccc-------
Confidence 469999999999976899999999999999999999999999999999998766554 44444433221110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHH-HHHH--HhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAEL-YEKL--QILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
...++++++....+... ...+.+.+... +... .........+.+.++|+++|+. +..++++.+
T Consensus 74 ---------~~~IgYVPQ~~~~d~~f----P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~ 139 (254)
T COG1121 74 ---------RLRIGYVPQKSSVDRSF----PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGE 139 (254)
T ss_pred ---------CCeEEEcCcccccCCCC----CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccc
Confidence 01122333221111000 01111111110 0111 1111234478899999999997 567899999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
|||||+|||.|||||+++|+||||||||+|+|+.++..|.++|+++ ++|||+||||++.+..+||+|+.|+.. ++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~- 217 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH-LI- 217 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe-eE-
Confidence 9999999999999999999999999999999999999999998765 679999999999999999999999865 43
Q ss_pred ecCChhhHHh
Q 048654 398 YRGNFDDFES 407 (723)
Q Consensus 398 ~~g~~~~~~~ 407 (723)
+.|+++++..
T Consensus 218 ~~G~~~~~~~ 227 (254)
T COG1121 218 ASGPPEEVLT 227 (254)
T ss_pred eccChhhccC
Confidence 4588777643
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=338.33 Aligned_cols=222 Identities=27% Similarity=0.366 Sum_probs=175.9
Q ss_pred cceEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAA-RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y-~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
++|+++||++.| +++++|+||||+|++||+++|||+||||||||||+|+|+.. ++.|+|.+.+.++.....
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~------ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKG------ 73 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccch------
Confidence 469999999999 78899999999999999999999999999999999998654 566677776665554332
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHH-------HHHHHHhcCchHHHHHHHHHHHhCCCCccccC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAE-------LYEKLQILGSDAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
.+...++..++++.+..... ....+.+++.. .+..+..+...+.+.++.++|+++|+.+. ..
T Consensus 74 ----k~lr~~r~~iGmIfQ~~nLv------~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-A~ 142 (258)
T COG3638 74 ----KELRKLRRDIGMIFQQFNLV------PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-AY 142 (258)
T ss_pred ----HHHHHHHHhceeEeccCCcc------cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-HH
Confidence 23445566666654322211 11122222211 12223334456778899999999999754 45
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
.+..+|||||+|||+|||||+++|+|||.|||+++|||.+...++++|++. +.|||+..|+++++.++||||+-|+
T Consensus 143 qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 143 QRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred HHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence 889999999999999999999999999999999999999999999999865 6899999999999999999999999
Q ss_pred CCEEEEecCChhhH
Q 048654 392 DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 ~G~i~~~~g~~~~~ 405 (723)
+|+++ |.|+..+.
T Consensus 223 ~G~iv-fDg~~~el 235 (258)
T COG3638 223 AGRIV-FDGPASEL 235 (258)
T ss_pred CCcEE-EeCChhhh
Confidence 99996 67887765
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=347.20 Aligned_cols=209 Identities=36% Similarity=0.508 Sum_probs=176.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------ee
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ 561 (723)
+++.+++++|.|+++ ..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|.|.+++. .+
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 478999999999876 57899999999999999999999999999999999999999999987663 35
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
+|+++|++..++... ++... ..+.+...+.. ...++..+|..+|+.+.. ++++.+|||||||||+||.+|+++|
T Consensus 81 vG~VfQnpd~q~~~~-tV~~e-vafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-~r~p~~LSGGqkqRvaIA~vLa~~P 157 (235)
T COG1122 81 VGLVFQNPDDQLFGP-TVEDE-VAFGLENLGLPREEIEERVAEALELVGLEELL-DRPPFNLSGGQKQRVAIAGVLAMGP 157 (235)
T ss_pred eEEEEECcccccccC-cHHHH-HhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-cCCccccCCcceeeHHhhHHHHcCC
Confidence 899999876554432 32332 22222223332 245688899999998764 5778999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
++|||||||++||+.+++.+++.|+++. .|||+||||++++..+|| |+|+|++|+++ +.|++.++...
T Consensus 158 ~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad-----~v~vl~~G~i~-~~g~p~~i~~~ 229 (235)
T COG1122 158 EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYAD-----RVVVLDDGKIL-ADGDPAEIFND 229 (235)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCC-----EEEEEECCEEe-ecCCHHHHhhh
Confidence 9999999999999999999999999874 489999999999999995 99999999997 57888777654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=325.75 Aligned_cols=200 Identities=31% Similarity=0.455 Sum_probs=166.7
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------e
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------L 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------~ 560 (723)
||+++||++.|++. ..+|+||||+|.+||++-|+||+|||||||||+|++..+|++|+|++++. .
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 68999999999976 57999999999999999999999999999999999999999999998652 3
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
+||+++|++. ...++.+|+. +.+..... ......+++.+.|+.+||.+....-| .+|||||||||+||||++.+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA-~pL~v~G~-~~~~i~~rV~~~L~~VgL~~k~~~lP-~~LSGGEQQRvaIARAiV~~P 156 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVA-LPLRVIGK-PPREIRRRVSEVLDLVGLKHKARALP-SQLSGGEQQRVAIARAIVNQP 156 (223)
T ss_pred eeeeEeeeccccccchHhhhhh-hhhhccCC-CHHHHHHHHHHHHHHhccchhhhcCc-cccCchHHHHHHHHHHHccCC
Confidence 6999999863 3344555532 22221111 01123466889999999987765444 799999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecC
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~ 703 (723)
.+||.||||.+|||.....|++++.+++ .||||.|||.+++.++- .|++.+++|+++.++
T Consensus 157 ~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~-----~rvl~l~~Grl~~d~ 219 (223)
T COG2884 157 AVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR-----HRVLALEDGRLVRDE 219 (223)
T ss_pred CeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc-----CcEEEEeCCEEEecc
Confidence 9999999999999999999999988875 58999999999999875 599999999998653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=360.79 Aligned_cols=209 Identities=31% Similarity=0.465 Sum_probs=175.0
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEE
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIG 563 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig 563 (723)
.+.|+++||++.|++ ..+++||||+|.+||+++|+||||||||||||+|+|+..|++|+|.++++ ..+|
T Consensus 3 ~~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 3 KPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred CceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 468999999999984 46899999999999999999999999999999999999999999998874 3689
Q ss_pred EEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 564 RYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 564 ~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
++||+. ++++++.+|+ .|-+............+++.++|+.++|.+... +.+.+|||||||||+|||||+.+|++|
T Consensus 81 ~VFQ~YALFPHltV~~NV-afGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 81 MVFQSYALFPHMTVEENV-AFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-RKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred eeecCcccCCCCcHHHHh-hhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-hChhhhChHHHHHHHHHHHhhcCcchh
Confidence 999974 6778888874 333331111111113457899999999988665 566999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHH----cCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDE----FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~----~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||.++||..-+..+...|++ .+.|.|+||||.+++..++| ||.||++|+|.- -|+|+++..
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msD-----rI~Vm~~G~I~Q-~gtP~eiY~ 226 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSD-----RIAVMNDGRIEQ-VGTPEEIYE 226 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcc-----ceEEccCCceee-cCCHHHHhh
Confidence 99999999999887777666655 45799999999999999995 999999999974 588888643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=334.48 Aligned_cols=212 Identities=26% Similarity=0.373 Sum_probs=162.8
Q ss_pred ceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++||++.|+. ..+|++|||+|++||+++|+|||||||||||++|.|+..| +.|.+.+.+.++...+...+.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHH
Confidence 3679999999953 3799999999999999999999999999999999988665 566777777776544332211
Q ss_pred HHHHhhHHHHHHHHHHHhhhc-CcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQN-STSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
. .-+..++++.+ ..+. +...+.+++.... .+..........++..+++.+|+.+...++++.
T Consensus 79 ~---------~R~~~iGfvFQ~~nLl-------~~ltv~ENv~lpl-~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~ 141 (226)
T COG1136 79 K---------LRRKKIGFVFQNFNLL-------PDLTVLENVELPL-LIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS 141 (226)
T ss_pred H---------HHHHhEEEECccCCCC-------CCCCHHHHHHhHH-HHcCCChhHHHHHHHHHHHhcCChhhhccCCch
Confidence 1 12334555533 2222 2233444443222 122222224577889999999998665558899
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+|||||||||||||||+.+|+|||.||||.+||..+...++++|.++ +.||||||||...+. +|||++.|.+|++
T Consensus 142 eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999999988765 579999999999887 6999999999985
Q ss_pred E
Q 048654 396 H 396 (723)
Q Consensus 396 ~ 396 (723)
.
T Consensus 221 ~ 221 (226)
T COG1136 221 E 221 (226)
T ss_pred e
Confidence 3
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=324.93 Aligned_cols=223 Identities=26% Similarity=0.340 Sum_probs=177.9
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCC---cEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK---NIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~---~~~i~~~~q~~~~~~~~~~~ 240 (723)
..|+++||++.||.+.+|+|||+.|++++++|||||||||||||||+|++.....|+ +|+|.+.++++.....
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~---- 81 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV---- 81 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCC----
Confidence 458999999999999999999999999999999999999999999999988766654 3788888887764422
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
+...++..++++.+... ++ ...+.++++.... +..+.....++.++..|....|.+ +..++.
T Consensus 82 -------d~~~lRr~vGMVFQkPn------PF-p~SIydNVayG~r-~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s 146 (253)
T COG1117 82 -------DVVELRRRVGMVFQKPN------PF-PMSIYDNVAYGLR-LHGIKDKELDEIVESSLKKAALWDEVKDRLHKS 146 (253)
T ss_pred -------CHHHHHHHheeeccCCC------CC-CchHHHHHHHhHH-hhccchHHHHHHHHHHHHHhHhHHHhHHHhhCC
Confidence 22356777777644321 12 1344555544332 222223556677888888877753 334678
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~--~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
...||||||||++|||||+.+|+|||||||||+|||.+...+.+++.+++ -|||+|||++..+.+++|++.++..|++
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~L 226 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEE
Confidence 88999999999999999999999999999999999999999999998875 4999999999999999999999999999
Q ss_pred EEecCChhhHH
Q 048654 396 HFYRGNFDDFE 406 (723)
Q Consensus 396 ~~~~g~~~~~~ 406 (723)
++| |+.+.+.
T Consensus 227 vE~-g~T~~iF 236 (253)
T COG1117 227 VEF-GPTDKIF 236 (253)
T ss_pred EEE-cCHHhhh
Confidence 987 5555443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=352.71 Aligned_cols=209 Identities=31% Similarity=0.472 Sum_probs=175.4
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIG 563 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig 563 (723)
.+++++||++.|++. ..+|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.+.+. .++|
T Consensus 3 ~~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 3 EVIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred ceeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 367889999999831 35899999999999999999999999999999999999999999998762 3589
Q ss_pred EEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 564 RYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 564 ~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
|++|.+ .+.+++.++. .+....+.... ....+.++++|+.|||.... ++++.+||+||||||.||+||+.+|+||
T Consensus 82 y~~~~~~~~~~lT~~e~l-~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 82 YVPQEPSLYPELTVRENL-EFFARLYGLSK-EEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred EEccCCCCCccccHHHHH-HHHHHHhCCCh-hHHHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999974 4556665553 33333332211 12356789999999998744 5788999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
||||||+|||+.++..+.++|+++. .|||++||.++.+..+|| +|++|++|+++ +.|+++++...
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d-----~v~il~~G~~~-~~g~~~~l~~~ 227 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCD-----RVIILNDGKII-AEGTPEELKEK 227 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC-----EEEEEeCCEEE-EeCCHHHHHHh
Confidence 9999999999999999999999873 389999999999999995 99999999997 45788876554
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=356.95 Aligned_cols=218 Identities=25% Similarity=0.333 Sum_probs=173.8
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
..|+++||+++|++..+|+|+||+|.+||+++|+||||||||||||+|+|+.. |++|.|.+.++.+.+.....
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~k----- 76 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEK----- 76 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhh-----
Confidence 46999999999999999999999999999999999999999999999999875 45677888888876543221
Q ss_pred HhhHHHHHHHHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
+.++++ |+..+ ++...+.+++++.+........++..+++.++|+.+++.. ..+|++.+||
T Consensus 77 ----------R~ig~VFQ~YAL-------FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLS 138 (352)
T COG3842 77 ----------RPIGMVFQSYAL-------FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLS 138 (352)
T ss_pred ----------cccceeecCccc-------CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhC
Confidence 122222 22211 1233455666554441112233457789999999999975 5689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC----RWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~----~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||||||||+.+|+|||||||.++||..-+..++..|+ +.+.|.|+||||.+++..++|||++|++|+|..
T Consensus 139 GGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q- 217 (352)
T COG3842 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ- 217 (352)
T ss_pred hHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee-
Confidence 999999999999999999999999999999988777666555 457899999999999999999999999999964
Q ss_pred cCChhhHHh
Q 048654 399 RGNFDDFES 407 (723)
Q Consensus 399 ~g~~~~~~~ 407 (723)
.|++++++.
T Consensus 218 ~gtP~eiY~ 226 (352)
T COG3842 218 VGTPEEIYE 226 (352)
T ss_pred cCCHHHHhh
Confidence 577766643
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=341.32 Aligned_cols=207 Identities=28% Similarity=0.392 Sum_probs=171.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------eeE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LRI 562 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~i 562 (723)
+|+++++++.|+.. .+++||||+|+.||.+||+|||||||||||++|+|++.|+.|.|.++++ .+|
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence 57889999999863 5799999999999999999999999999999999999999999998875 369
Q ss_pred EEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 563 GRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 563 g~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
|+++|+. +.++++.+|+...+..............++.++|..+.|.+... +.+.+|||||||||||||||+..|++
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-RYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-cCchhcChHHHHHHHHHHHhhcCCCe
Confidence 9999984 45667776643222111111111124567888999999987655 55689999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||||+++||...+..|...|+++ +.|+|+||||.+++.++|| ||++|++|+|.. .|+++++.
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~lad-----rvvvl~~G~Ieq-vg~p~ev~ 226 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELAD-----RVVVLNQGRIEQ-VGPPDEVY 226 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcc-----eEEEecCCeeee-eCCHHHHh
Confidence 9999999999999988888777664 5799999999999999995 999999999975 47887764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=351.65 Aligned_cols=210 Identities=25% Similarity=0.368 Sum_probs=172.2
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------ee
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LR 561 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ 561 (723)
..++|+++||++.|++ ..+|+||||+|.+|+++||+||||||||||+++|+|+++|++|+|++++. .+
T Consensus 4 ~~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 4 SVAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR 81 (306)
T ss_pred CCceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhc
Confidence 3468999999999975 35899999999999999999999999999999999999999999998763 35
Q ss_pred EEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
+||++|... ..+++.++... ....+.. ........+.++++.++|.... ++++..|||||||||+||+||+.+|+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~-~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLV-FGRYFGL-SAAAARALVPPLLEFAKLENKA-DAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHH-HHHHcCC-CHHHHHHHHHHHHHHcCCchHh-cCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 899999742 23444444221 1112111 0011234567889999997544 46789999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
+|||||||+|||+.++..+.++|+++ +.|||++||+++++..+|| +|++|++|+++ +.|+++++...
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d-----~i~il~~G~i~-~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCD-----RLCVIEEGRKI-AEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC-----EEEEEECCEEE-EECCHHHHHhc
Confidence 99999999999999999999999887 3589999999999999995 99999999997 46888887543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=355.67 Aligned_cols=207 Identities=28% Similarity=0.396 Sum_probs=168.1
Q ss_pred eEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
||+++||++.|++. ...+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 58999999999632 236899999999999999999999999999999999999999999988653
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..++|++|++. ...++.++.. +.+.... .......+++.++|+.+||.+.. ++++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~-~~~~~~~-~~~~~~~~~v~e~l~~vgL~~~~-~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVA-LPLELDN-TPKDEIKRKVTELLALVGLGDKH-DSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHHh
Confidence 25899999853 2233444422 1111111 10011234578899999997654 46679999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+|+||||||||++||+.+...+.++|+++ +.|||+||||++.+.++|| +|++|++|+|+. .|+++++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d-----~v~vl~~G~iv~-~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICD-----CVAVISNGELIE-QGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999999999876 4699999999999999995 999999999985 57776653
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=339.33 Aligned_cols=205 Identities=34% Similarity=0.422 Sum_probs=164.3
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------ee
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------LR 561 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------~~ 561 (723)
|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 468999999975 35899999999999999999999999999999999999999999987652 24
Q ss_pred EEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
++|++|... ..+++.++.... ...+...........+..+++.+||.... .+++.+|||||||||+|||||+.+|+
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFP-LREHTRLSEEEIREIVLEKLEAVGLRGAE-DLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHH-HhhccCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 789998742 222333332111 11111110001234577889999997654 46779999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+++ +.|+++++.
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d-----~v~~l~~G~i~-~~g~~~~~~ 225 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIAD-----RIAVLYDGKIV-AEGTPEELR 225 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcC-----EEEEEECCeEE-EecCHHHHc
Confidence 99999999999999999999999875 4689999999999999995 99999999997 467877654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=337.30 Aligned_cols=221 Identities=31% Similarity=0.425 Sum_probs=171.5
Q ss_pred cceEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~~~-~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
++++++++++.|++. .+|+++||+|.+|++++|+|+||||||||+++|+|++.|..| .|.+.+.....
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G--~v~~~g~~~~~--------- 70 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG--EVLVDGLDTSS--------- 70 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCC--EEEECCeeccc---------
Confidence 468999999999775 999999999999999999999999999999999999876554 45433333221
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
......+++.++++.+.... ......+.+.+++....+ .+..++.++++.++|+.+|+... .++++..||
T Consensus 71 ---~~~~~~~~~~vG~VfQnpd~-----q~~~~tV~~evafg~~n~-g~~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LS 140 (235)
T COG1122 71 ---EKSLLELRQKVGLVFQNPDD-----QLFGPTVEDEVAFGLENL-GLPREEIEERVAEALELVGLEEL-LDRPPFNLS 140 (235)
T ss_pred ---hhhHHHhhcceEEEEECccc-----ccccCcHHHHHhhchhhc-CCCHHHHHHHHHHHHHHcCchhh-ccCCccccC
Confidence 01122345555554332111 011123344444433332 23345688999999999999754 689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+||.+|+++|++|||||||++||+.++.++.++|+++ ++|||+||||++++..+||++++|++|+++ +
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~ 219 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-A 219 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-e
Confidence 99999999999999999999999999999999999999999876 469999999999999999999999999996 5
Q ss_pred cCChhhHH
Q 048654 399 RGNFDDFE 406 (723)
Q Consensus 399 ~g~~~~~~ 406 (723)
.|++.++.
T Consensus 220 ~g~p~~i~ 227 (235)
T COG1122 220 DGDPAEIF 227 (235)
T ss_pred cCCHHHHh
Confidence 67765543
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=334.32 Aligned_cols=197 Identities=30% Similarity=0.426 Sum_probs=159.6
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------e
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------L 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------~ 560 (723)
||+++|+++.|++....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 58899999999643235899999999999999999999999999999999999999999988763 1
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.++|++|+.. ..+++.++... ...... .......+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAF-PLRIIG-VPPRDANERVSAALEKVGLEGKA-HALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecCccccccccHHHHHHH-HHHhcC-CCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 4789998742 22333333211 111111 00001235678899999997654 4567999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+|
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d-----~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRH-----RTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEeCCcC
Confidence 999999999999999999999999887 4689999999999999995 9999999975
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=353.34 Aligned_cols=211 Identities=26% Similarity=0.370 Sum_probs=172.8
Q ss_pred CCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------e
Q 048654 491 LTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------L 560 (723)
Q Consensus 491 ~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~ 560 (723)
++.++|+++||++.|++. .+|+||||+|.+|+++||+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 37 ~~~~~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~ 114 (340)
T PRK13536 37 MSTVAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114 (340)
T ss_pred CCceeEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhc
Confidence 346789999999999853 5899999999999999999999999999999999999999999998763 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.+||++|... ..+++.++... ....+.. ........+..+++.++|.... ++++.+|||||||||+||+||+.+|
T Consensus 115 ~ig~v~q~~~~~~~~tv~e~l~~-~~~~~~~-~~~~~~~~~~~ll~~~~L~~~~-~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 115 RIGVVPQFDNLDLEFTVRENLLV-FGRYFGM-STREIEAVIPSLLEFARLESKA-DARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred cEEEEeCCccCCCCCcHHHHHHH-HHHHcCC-CHHHHHHHHHHHHHHcCCchhh-CCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5899999742 23344443221 1112211 0011234567889999997654 4678999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
+||||||||+|||+.++..+.++|+++ +.|||++||+++++.++|| +|++|++|+|+ +.|+++++...
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d-----~i~il~~G~i~-~~g~~~~l~~~ 262 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD-----RLCVLEAGRKI-AEGRPHALIDE 262 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC-----EEEEEECCEEE-EEcCHHHHHhh
Confidence 999999999999999999999999887 3689999999999999995 99999999997 56888887543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=350.05 Aligned_cols=206 Identities=30% Similarity=0.422 Sum_probs=172.7
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
.|+++||++.|++.. +|++|||+|..||+++|+||||||||||||+|+|+.+|++|+|+++++ ..++++
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence 689999999998632 899999999999999999999999999999999999999999998874 369999
Q ss_pred cccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
||++ .+++++.+|.. +.+...... .....+++++..+.++|.+.+.. .+.+|||||||||+|||||+++|+++||
T Consensus 81 FQ~yALyPhmtV~~Nia-f~Lk~~~~~-k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 81 FQNYALYPHMTVYENIA-FGLKLRGVP-KAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred eCCccccCCCcHHHHhh-hhhhhCCCc-hHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 9985 46677777643 222221110 11235678899999999987764 4599999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||+++||...+..+...|+++ +.|+|+||||..++..++| ||.||++|+|..+ |++.++.+
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtlad-----ri~Vm~~G~i~Q~-g~p~ely~ 223 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLAD-----RIVVMNDGRIQQV-GTPLELYE 223 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCC-----EEEEEeCCeeeec-CChHHHhh
Confidence 9999999999888777777654 5799999999999999995 9999999999754 77777654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=319.61 Aligned_cols=216 Identities=24% Similarity=0.419 Sum_probs=172.4
Q ss_pred ceEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAARGKE-LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~~~-vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|++.+++++|+..+ +++||||+++.|+++||+|||||||||+||+|++++.|..|.+.| .+-+....+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~i--dg~d~~~~p-------- 70 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI--DGVDTVRDP-------- 70 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEE--eecccccCh--------
Confidence 488999999999876 999999999999999999999999999999999988776655444 332222111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
...++.++.+.. ..+.......++...++..+..+...+.++++.++.+.|++.+ ..++++..||-
T Consensus 71 ------~~vrr~IGVl~~-------e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~-~~~rRv~~~S~ 136 (245)
T COG4555 71 ------SFVRRKIGVLFG-------ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-YLDRRVGEFST 136 (245)
T ss_pred ------HHHhhhcceecC-------CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH-HHHHHHhhhch
Confidence 123344443321 1122222233333444556666777788999999999999974 56899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||||||+|||||+++|++|||||||+|||..++..+.+++.++ +++||++||.+.++..+||+|++|++|+++ +.|
T Consensus 137 G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~g 215 (245)
T COG4555 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEG 215 (245)
T ss_pred hhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcC
Confidence 9999999999999999999999999999999999999998865 579999999999999999999999999997 568
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+..
T Consensus 216 s~~~l 220 (245)
T COG4555 216 SIEAL 220 (245)
T ss_pred CHHHH
Confidence 87665
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=351.80 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=169.4
Q ss_pred ceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++||+++|++ .++|+||||+|++|+++||+||||||||||+++|+|+..| ..|+|.+.++++......
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~~~~~~--- 75 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNS--- 75 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHH---
Confidence 4899999999952 4799999999999999999999999999999999998654 567777777766432211
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+...++..++++.+.... .....+.+++..... ...........++.++|+.+|+.+ ..++++.+
T Consensus 76 -------~l~~~r~~Ig~v~Q~~~l------~~~~tv~eni~~~~~-~~~~~~~~~~~~v~e~l~~vgL~~-~~~~~~~~ 140 (343)
T TIGR02314 76 -------ELTKARRQIGMIFQHFNL------LSSRTVFGNVALPLE-LDNTPKDEIKRKVTELLALVGLGD-KHDSYPSN 140 (343)
T ss_pred -------HHHHHhcCEEEEECCccc------cccCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-hhhCChhh
Confidence 111223344444332111 111233333332221 112233455678999999999974 56899999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|+++
T Consensus 141 LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220 (343)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999998764 679999999999999999999999999997
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+..++
T Consensus 221 ~-~g~~~~v 228 (343)
T TIGR02314 221 E-QGTVSEI 228 (343)
T ss_pred E-EcCHHHH
Confidence 4 5777665
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=335.06 Aligned_cols=220 Identities=28% Similarity=0.400 Sum_probs=164.1
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+......
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~-------- 70 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISGLSEA-------- 70 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccChh--------
Confidence 5789999999989999999999999999999999999999999999998654 566777766654322110
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
+...++..++++.+.... .....+.+++.................++.++++.+|+.. ..++++.+|||||
T Consensus 71 --~~~~~~~~i~~v~q~~~~------~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~ 141 (235)
T cd03261 71 --ELYRLRRRMGMLFQSGAL------FDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGM 141 (235)
T ss_pred --hHHHHhcceEEEccCccc------CCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHH
Confidence 001112223333221110 0111223333221111011222344567889999999974 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|+
T Consensus 142 ~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~ 220 (235)
T cd03261 142 KKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGT 220 (235)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecC
Confidence 99999999999999999999999999999999999998764 579999999999999999999999999996 4577
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+++
T Consensus 221 ~~~~ 224 (235)
T cd03261 221 PEEL 224 (235)
T ss_pred HHHH
Confidence 6554
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=389.04 Aligned_cols=185 Identities=23% Similarity=0.331 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---Cc
Q 048654 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALF---VQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KK 368 (723)
Q Consensus 295 ~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~---~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~ 368 (723)
....++ ++|+.+||.....++++.+|||||+|||+||+||+ .+|+||||||||++||+.++..|.++|+++ +.
T Consensus 785 ~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~ 863 (1809)
T PRK00635 785 SIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863 (1809)
T ss_pred HHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 344556 58899999643257899999999999999999997 699999999999999999999999998764 67
Q ss_pred EEEEEeCCHHHHHhhCCEEEEEe------CCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHH
Q 048654 369 TLVVVSHDRDFLNTVCTEIIHLH------DQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKV 442 (723)
Q Consensus 369 TVIivsHdl~~l~~iad~Ii~L~------~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (723)
|||+|||+++++ .+||+|++|. +|+++ ..|+++++..........+ ...+.
T Consensus 864 TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~~~s~t~~~l-------~~~l~-------------- 920 (1809)
T PRK00635 864 TVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELIHLHTPTAKAL-------RPYLS-------------- 920 (1809)
T ss_pred EEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHHhccCchHHHH-------HHHhh--------------
Confidence 999999999999 7899999996 67886 4577766532100000000 00000
Q ss_pred HHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEec
Q 048654 443 KDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDM 522 (723)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~ 522 (723)
... .. + . + .+.+ ..+ +...++++.+... ..|+||||+|++
T Consensus 921 -------------------~~~---~~---~----~----~-~~~~---~~~-l~~~~i~i~~~~~--~~lk~isl~i~~ 960 (1809)
T PRK00635 921 -------------------SPQ---EL---P----Y----L-PDPS---PKP-PVPADITIKNAYQ--HNLKHIDLSLPR 960 (1809)
T ss_pred -------------------ccc---cc---c----c----c-cccc---ccc-cccceEEEecccc--ccccceeEEecC
Confidence 000 00 0 0 0 0000 011 3445666666432 358999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHH
Q 048654 523 GTRVAIVGPNGAGKSTLLNLL 543 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L 543 (723)
|++++|+|+||||||||+..+
T Consensus 961 gei~~itG~nGsGKStL~~~~ 981 (1809)
T PRK00635 961 NALTAVTGPSASGKHSLVFDI 981 (1809)
T ss_pred CcEEEEECCCCCChhHHHHHH
Confidence 999999999999999977655
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=345.25 Aligned_cols=216 Identities=29% Similarity=0.446 Sum_probs=171.1
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.++++||++.|+ ++++|+||||+|++|+++||+||||||||||||+|+|+..| .+|+|.+.+.++....
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~-------- 73 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP-------- 73 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCH--------
Confidence 478899999999 69999999999999999999999999999999999998765 5677777776654321
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
..+++.++++++.... .+... ..+...++..+.........+++.++|+.+||.. ..++++..||+
T Consensus 74 ------~~~~~~igy~~~~~~~------~~~lT-~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~ 139 (293)
T COG1131 74 ------AKVRRRIGYVPQEPSL------YPELT-VRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSG 139 (293)
T ss_pred ------HHHHhheEEEccCCCC------Ccccc-HHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCH
Confidence 1233445555332211 11122 2233334444443333455678999999999986 34788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-cEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---K-KTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~-~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
||||||+||+||+.+|+||||||||+||||.++..+.++|+++ + .|||++||.++++..+||+|++|++|+++.+
T Consensus 140 G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~- 218 (293)
T COG1131 140 GMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE- 218 (293)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe-
Confidence 9999999999999999999999999999999999999999865 3 6999999999999999999999999999754
Q ss_pred CChhhH
Q 048654 400 GNFDDF 405 (723)
Q Consensus 400 g~~~~~ 405 (723)
|+.+++
T Consensus 219 g~~~~l 224 (293)
T COG1131 219 GTPEEL 224 (293)
T ss_pred CCHHHH
Confidence 666554
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=339.74 Aligned_cols=218 Identities=26% Similarity=0.329 Sum_probs=165.1
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCCh-HHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR-SAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~-~~~~~~~ 243 (723)
+|.++|+++.|+...+++||||+|+.||.++|+||||||||||||+|+|+..| ..|.|.+.++....... .....-+
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcce
Confidence 58999999999999999999999999999999999999999999999998765 55677776663322111 1111111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHH-HhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL-QILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
+...+.+.++.. +.+.+++++..... ...+......++.++|+.+.|+ .+.++++.+||
T Consensus 80 GfvFQ~YALF~H-------------------mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLS 139 (345)
T COG1118 80 GFVFQHYALFPH-------------------MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLS 139 (345)
T ss_pred eEEEechhhccc-------------------chHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcC
Confidence 111111222222 22333343332211 1123456788999999999997 46789999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC----RWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~----~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||||||||+.+|++||||||+++||..-+..|...|+ +++.|+|+||||.+++.++||||++|++|+|...
T Consensus 140 GGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred hHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 999999999999999999999999999999987766666555 4588999999999999999999999999999654
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
|+.+++
T Consensus 220 -g~p~ev 225 (345)
T COG1118 220 -GPPDEV 225 (345)
T ss_pred -CCHHHH
Confidence 666555
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=347.01 Aligned_cols=207 Identities=28% Similarity=0.403 Sum_probs=168.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIG 563 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig 563 (723)
.+|+++||++.|++ ..+|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 3 VAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred cEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 47999999999975 35899999999999999999999999999999999999999999998763 3589
Q ss_pred EEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 564 RYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 564 ~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
|++|... ..+++.++...+ ...+. .........+..+++.++|.... ++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~-~~~~~-~~~~~~~~~~~~ll~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVF-GRYFG-MSTREIEAVIPSLLEFARLESKA-DVRVALLSGGMKRRLTLARALINDPQLL 157 (303)
T ss_pred EEeccccCCcCCcHHHHHHHH-HHHcC-CCHHHHHHHHHHHHHHCCChhHh-cCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999742 223343332211 11111 10001124567789999997544 4677999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++ +.|+++++..
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d-----~i~~l~~G~i~-~~g~~~~~~~ 224 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD-----RLCVLESGRKI-AEGRPHALID 224 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC-----EEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999999887 4699999999999999995 99999999997 4688877654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=328.23 Aligned_cols=211 Identities=25% Similarity=0.316 Sum_probs=158.6
Q ss_pred ceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 165 DITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 165 ~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
+|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.++.+......
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~----- 73 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLTRLRGR----- 73 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehhhcChh-----
Confidence 3789999999964 5799999999999999999999999999999999998654 466777766554321111
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
....+++.++++.+.... .....+.+++..... ...........++.++++.+|+.. ..++++.+||
T Consensus 74 -----~~~~~~~~i~~~~q~~~~------~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS 140 (216)
T TIGR00960 74 -----EIPFLRRHIGMVFQDHRL------LSDRTVYDNVAFPLR-IIGVPPRDANERVSAALEKVGLEG-KAHALPMQLS 140 (216)
T ss_pred -----HHHHHHHhceEEecCccc------cccccHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCC
Confidence 011123334444322110 011122333322111 111222344567899999999974 4578999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
|||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999999875 57999999999999999999999999974
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=344.96 Aligned_cols=216 Identities=26% Similarity=0.362 Sum_probs=167.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++.+|+||||+|++|+++||+||||||||||+++|+|+..| ..|+|.+.+.++.....
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~~~~~~-------- 76 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPVPSRAR-------- 76 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEecccchH--------
Confidence 69999999999999999999999999999999999999999999999998754 55677766665432111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
..+..++++.+.... .....+.+++.. +..+......+...++.++++.+++.. ..++++.+||||
T Consensus 77 ------~~~~~ig~v~q~~~~------~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G 142 (306)
T PRK13537 77 ------HARQRVGVVPQFDNL------DPDFTVRENLLV-FGRYFGLSAAAARALVPPLLEFAKLEN-KADAKVGELSGG 142 (306)
T ss_pred ------HHHhcEEEEeccCcC------CCCCcHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCchhhCCHH
Confidence 122334444332111 111223333322 222222233344567889999999974 457999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+||+||+.+|+||||||||+|||+.++.+|+++|+++ +.|||++||+++++..+||+|++|++|+++ +.|+
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~ 221 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGA 221 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECC
Confidence 999999999999999999999999999999999999999875 579999999999999999999999999996 4577
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+++
T Consensus 222 ~~~l 225 (306)
T PRK13537 222 PHAL 225 (306)
T ss_pred HHHH
Confidence 6655
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=326.85 Aligned_cols=194 Identities=28% Similarity=0.455 Sum_probs=157.7
Q ss_pred EEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce--------eEEEEccc
Q 048654 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL--------RIGRYSQH 568 (723)
Q Consensus 497 ~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~--------~ig~~~q~ 568 (723)
+++|+++.|++. ..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.. .++|++|.
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 367999999752 358999999999999999999999999999999999999999999987742 58999997
Q ss_pred cccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC
Q 048654 569 FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN 648 (723)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~ 648 (723)
....+. ..+..+.+...... .+ .....+.++++.+||.... ++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~~~~~~-~~tv~e~l~~~~~~-~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 155 (205)
T cd03226 80 VDYQLF-TDSVREELLLGLKE-LD-AGNEQAETVLKDLDLYALK-ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155 (205)
T ss_pred hhhhhh-hccHHHHHhhhhhh-cC-ccHHHHHHHHHHcCCchhc-CCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 421111 11222222111111 11 1235678899999998654 46779999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 649 HLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 649 ~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
|||+.++..+.++|+++ +.|||+||||++++..+|| ++++|++|+++
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~G~iv 205 (205)
T cd03226 156 GLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCD-----RVLLLANGAIV 205 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEC
Confidence 99999999999999887 3689999999999999995 99999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=331.40 Aligned_cols=202 Identities=27% Similarity=0.389 Sum_probs=162.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIGRY 565 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig~~ 565 (723)
|+++|+++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEe
Confidence 4789999999753 5899999999999999999999999999999999999999999988763 248899
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|... ..+++.++... ....+.. ........+.++++.|+|.... ++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~-~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qr~~la~al~~~p~llll 155 (220)
T cd03265 79 FQDLSVDDELTGWENLYI-HARLYGV-PGAERRERIDELLDFVGLLEAA-DRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155 (220)
T ss_pred cCCccccccCcHHHHHHH-HHHHcCC-CHHHHHHHHHHHHHHcCCHHHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98742 22233333211 1111111 0001234678899999997543 467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||++||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++. .|++++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~ 218 (220)
T cd03265 156 DEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD-----RVAIIDHGRIIA-EGTPEE 218 (220)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEeCCEEEE-eCChHH
Confidence 9999999999999999999875 4689999999999999995 999999999974 466654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=345.98 Aligned_cols=215 Identities=26% Similarity=0.373 Sum_probs=170.8
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
..|+++||++.||+..+|+++||+|..||+++|+||||||||||||+|+|+..| .+|+|.+.+..+.......
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~vt~l~P~~----- 74 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDVTDLPPEK----- 74 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhH-----
Confidence 469999999999987799999999999999999999999999999999998754 5667777777776533221
Q ss_pred HhhHHHHHHHHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
+.++++ |+..++ +...+.+++++... ......++.++++.++.+.|++.+ +.+|++.+||
T Consensus 75 ----------R~iamVFQ~yALy-------PhmtV~~Niaf~Lk-~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LS 135 (338)
T COG3839 75 ----------RGIAMVFQNYALY-------PHMTVYENIAFGLK-LRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLS 135 (338)
T ss_pred ----------CCEEEEeCCcccc-------CCCcHHHHhhhhhh-hCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCC
Confidence 112222 222221 12344455444332 233446788899999999999975 5689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||||||||+++|+++|||||+|+||+..+..+...|++ ++.|+|+||||..++..++|||++|++|+|...
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV 215 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec
Confidence 9999999999999999999999999999999887776666654 578999999999999999999999999999765
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
|++.++
T Consensus 216 -g~p~el 221 (338)
T COG3839 216 -GTPLEL 221 (338)
T ss_pred -CChHHH
Confidence 665554
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=328.36 Aligned_cols=196 Identities=31% Similarity=0.431 Sum_probs=158.7
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 468999999975 35899999999999999999999999999999999999999999988763 2489999
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|... ..+++.++.... ..... .........+.++++.++|.... ++++.+|||||||||+|||||+.+|+|||||
T Consensus 79 q~~~~~~~~tv~~~l~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 79 QDYALFPHLTVAENIAFG-LKLRG-VPKAEIRARVRELLELVGLEGLL-NRYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred CchhhccCCcHHHHHHhH-HHHcC-CCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9742 122333332111 11110 00001234577899999997544 4677999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 645 EPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++.
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d-----~v~~l~~G~i~~ 211 (213)
T cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALAD-----RIAVMNEGRIVQ 211 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcC-----EEEEEECCEEEe
Confidence 999999999999999999875 4589999999999999995 999999999964
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=313.23 Aligned_cols=213 Identities=26% Similarity=0.339 Sum_probs=171.1
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++||++.|+ +.++|+||||+|++||++.|+||||||||||||+|.+... |..|.|.+.++++.....
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~------- 71 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKG------- 71 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccc-------
Confidence 489999999996 4569999999999999999999999999999999998765 556777777777654322
Q ss_pred HhhHHHHHHHHHHHhhhc-CcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQN-STSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
.+...+++.++.+.+ ..+. ....+.++++..+.. ......+...++.++|+.+||.+ ..+..+.+||
T Consensus 72 ---~~iP~LRR~IGvVFQD~rLL-------~~~tvyeNVA~pL~v-~G~~~~~i~~rV~~~L~~VgL~~-k~~~lP~~LS 139 (223)
T COG2884 72 ---REIPFLRRQIGVVFQDFRLL-------PDRTVYENVALPLRV-IGKPPREIRRRVSEVLDLVGLKH-KARALPSQLS 139 (223)
T ss_pred ---cccchhhheeeeEeeecccc-------ccchHhhhhhhhhhc-cCCCHHHHHHHHHHHHHHhccch-hhhcCccccC
Confidence 134456777776533 2221 122344444443322 22345678899999999999975 4568899999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+||||++.+|+|||.||||.+|||.....|++++.++ |.||||.|||.+.+..+--|++.|++|+++.+
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999999999999999999999988888877654 78999999999999999999999999999765
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=351.55 Aligned_cols=206 Identities=26% Similarity=0.353 Sum_probs=169.8
Q ss_pred eEEEEEEEEEc-CCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEE
Q 048654 495 LLQLIEVSFSY-PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGR 564 (723)
Q Consensus 495 ~l~~~~ls~~y-~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~ 564 (723)
+|+++||++.| ++ ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 68999999999 54 35899999999999999999999999999999999999999999998764 35999
Q ss_pred Ecccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 565 YSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 565 ~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
++|++ +..+++.++.. +.+.... .........+.++++.+||.+.. ++++.+|||||||||+|||||+.+|+|||
T Consensus 81 v~Q~~~lfp~~tv~eNi~-~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 81 VFQNYALYPHMSVRENMA-YGLKIRG-MPKAEIEERVAEAARILELEPLL-DRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred EeCCccccCCCCHHHHHH-hHHhhcC-CCHHHHHHHHHHHHHHcCChhHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99974 33455555532 2222111 00011235678899999997654 46779999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D-----~i~vl~~G~i~~-~g~~~~~~~ 224 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLAD-----RVVVMNGGVAEQ-IGTPVEVYE 224 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEeCCEEEE-ECCHHHHHh
Confidence 99999999999999999888765 4689999999999999995 999999999975 588887644
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=343.96 Aligned_cols=208 Identities=25% Similarity=0.359 Sum_probs=166.1
Q ss_pred eEEEEEEEEEcCCCc---ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 495 LLQLIEVSFSYPNRE---DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~---~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
+|+++||++.|++.. ..+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 489999999997532 24899999999999999999999999999999999999999999987531
Q ss_pred -----------------------eeEEEEccccccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCC
Q 048654 560 -----------------------LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNH 613 (723)
Q Consensus 560 -----------------------~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~ 613 (723)
..+||++|+....+. ..++...+. +.....+.. ....+.++++.+||.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~-~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDII-FGPVSMGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHH-hhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 247999996422221 123222221 111111111 2345788999999964334
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcE
Q 048654 614 LTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSE 690 (723)
Q Consensus 614 ~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~dr 690 (723)
.+++.+|||||||||+|||+|+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+|| |
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ad-----r 234 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK-----R 234 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCC-----E
Confidence 5678999999999999999999999999999999999999999999999876 4699999999999999995 9
Q ss_pred EEEEECCeEEecCCCHHHHH
Q 048654 691 IWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 691 v~vl~~G~i~~~~g~~~~~~ 710 (723)
|++|++|+|+ ..|+++++.
T Consensus 235 v~vl~~G~i~-~~g~~~~~~ 253 (305)
T PRK13651 235 TIFFKDGKII-KDGDTYDIL 253 (305)
T ss_pred EEEEECCEEE-EECCHHHHh
Confidence 9999999997 467887754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=347.30 Aligned_cols=213 Identities=23% Similarity=0.344 Sum_probs=169.2
Q ss_pred CCCeEEEEEEEEEcCCC-----------cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-
Q 048654 492 TPPLLQLIEVSFSYPNR-----------EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~-----------~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~- 559 (723)
..++|+++||++.|+.. ...+|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|++++.
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 35799999999999631 235899999999999999999999999999999999999999999988653
Q ss_pred -------------eeEEEEccccc----cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCH
Q 048654 560 -------------LRIGRYSQHFV----DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSG 622 (723)
Q Consensus 560 -------------~~ig~~~q~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSG 622 (723)
..++|++|+.. ..+++.+++...+.............+.+.++|+.+||.....++.+.+|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 25899999852 2233433322211111111110112345778999999954333466799999
Q ss_pred HHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 623 GqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
||+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+.++..+|| +|++|.+|+
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~d-----ri~vl~~G~ 239 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISD-----RVLVMYLGH 239 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEECCE
Confidence 9999999999999999999999999999999999999998775 4689999999999999995 999999999
Q ss_pred EEecCCCHHHHH
Q 048654 699 VSRFPGTFEEYK 710 (723)
Q Consensus 699 i~~~~g~~~~~~ 710 (723)
|++ .|+.+++.
T Consensus 240 ive-~g~~~~i~ 250 (331)
T PRK15079 240 AVE-LGTYDEVY 250 (331)
T ss_pred EEE-EcCHHHHH
Confidence 985 47776654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=349.64 Aligned_cols=208 Identities=25% Similarity=0.394 Sum_probs=171.9
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEE
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIG 563 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig 563 (723)
.++|+++||++.|++ ..+|+|+||+|.+||+++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 4 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 4 KNFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred CcEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 458999999999975 35899999999999999999999999999999999999999999998763 3689
Q ss_pred EEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 564 RYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 564 ~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
|++|++ +..+++.+|... .+.... .......+.+.++++.+||.+.. ++++.+|||||||||+|||||+.+|+||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~-~l~~~~-~~~~~~~~~v~~~l~~~gl~~~~-~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGY-GLKMLG-VPKEERKQRVKEALELVDLAGFE-DRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred EEeCCcccCCCCCHHHHHHH-HHhHcC-CCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999974 334455555322 122111 00011245688899999998655 4667999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||||++||+.++..+.+.|+++ +.|+|+||||.+++..+|| +|++|++|+|+. .|+++++..
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD-----~i~vm~~G~i~~-~g~~~~~~~ 226 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSD-----TVIVMNKGKIMQ-IGSPQELYR 226 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 999999999999999999988765 4699999999999999995 999999999985 588887643
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=342.40 Aligned_cols=207 Identities=31% Similarity=0.401 Sum_probs=165.7
Q ss_pred EEEEEEEEEcCCCc---ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 496 LQLIEVSFSYPNRE---DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 496 l~~~~ls~~y~~~~---~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
|+++||++.|++.. ..+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999997421 35899999999999999999999999999999999999999999988763
Q ss_pred --eeEEEEccccccc---cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 560 --LRIGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 560 --~~ig~~~q~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral 634 (723)
..++|++|++... .++.++.. +..... ........+.+.++|+.+||.....++++.+|||||||||+|||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~-~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDIC-FGPMNF-GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHH-HHHHHc-CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 1489999974211 23333221 111111 0000012245788999999974444567899999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++|+|+ +.|+++++.
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~d-----rv~~l~~G~i~-~~g~~~~~~ 234 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYAD-----QIVVMHKGTVF-LQGTPREIF 234 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999999999876 4689999999999999995 99999999997 467877754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=317.11 Aligned_cols=208 Identities=26% Similarity=0.415 Sum_probs=172.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIGR 564 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig~ 564 (723)
||++.+++++|++. ..+++||||+++.|+++||+|||||||||+|++|++++.|++|.|+.++- .+||.
T Consensus 1 Ml~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 68899999999863 34899999999999999999999999999999999999999999987652 34666
Q ss_pred Eccc--cccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 565 YSQH--FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 565 ~~q~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
++-. +...++..++.. ++..++.. .......++..+.+.|+|....+ +.+..||-|+||||+|||||+++|.+||
T Consensus 80 l~~e~glY~RlT~rEnl~-~Fa~L~~l-~~~~~kari~~l~k~l~l~~~~~-rRv~~~S~G~kqkV~iARAlvh~P~i~v 156 (245)
T COG4555 80 LFGERGLYARLTARENLK-YFARLNGL-SRKEIKARIAELSKRLQLLEYLD-RRVGEFSTGMKQKVAIARALVHDPSILV 156 (245)
T ss_pred ecCCcChhhhhhHHHHHH-HHHHHhhh-hhhHHHHHHHHHHHHhChHHHHH-HHHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence 6532 334556666633 33333321 11123566788999999987665 6789999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
|||||+|||+.+.+.+.+.|.+.+ .+||++||+++++..+|| +|++|++|+++ +.|+++.+.+.
T Consensus 157 lDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD-----rvivlh~Gevv-~~gs~~~l~~r 223 (245)
T COG4555 157 LDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD-----RVIVLHKGEVV-LEGSIEALDAR 223 (245)
T ss_pred EcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh-----eEEEEecCcEE-EcCCHHHHHHH
Confidence 999999999999999999998874 589999999999999995 99999999997 67998887654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=348.99 Aligned_cols=207 Identities=30% Similarity=0.437 Sum_probs=167.1
Q ss_pred eEEEEEEEEEcCC--CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPN--REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~--~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
||+++||+++|++ ....+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999972 1246899999999999999999999999999999999999999999988752
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..++|++|++. ..+++.++.. +....+. .........+..+++.+||.... ++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~-~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVA-LPLELAG-TPKAEIKARVTELLELVGLSDKA-DRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHHc
Confidence 25899999753 2233433322 1111111 10001234577899999997544 46779999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d-----~v~~l~~G~i~~-~g~~~~~~ 229 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICD-----RVAVIDAGRLVE-QGTVSEVF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999999999876 3589999999999999995 999999999974 57777654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=338.82 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=167.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
.++|+++||++.|++ ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 458999999999975 35899999999999999999999999999999999999999999987652
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..++|++|... ..+++.++.... ...............+..+|+.+||.... ++++.+|||||||||+|||||+.
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYP-LREHTQLPAPLLHSTVMMKLEAVGLRGAA-KLMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHH-HHHccCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhc
Confidence 24789998742 222333332111 11111110001124567789999997544 46679999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++ +.|+++++.+
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d-----~v~~l~~G~i~-~~g~~~~~~~ 233 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIAD-----HAYIVADKKIV-AHGSAQALQA 233 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhC-----EEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999999999999876 3589999999999999995 99999999997 4578777653
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=341.24 Aligned_cols=208 Identities=30% Similarity=0.432 Sum_probs=166.5
Q ss_pred eEEEEEEEEEcCCCc---ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 495 LLQLIEVSFSYPNRE---DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~---~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
||+++||++.|+... ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 589999999997422 24899999999999999999999999999999999999999999988763
Q ss_pred ---eeEEEEccccccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 ---~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..++|++|+....+. ..+....+. +.....+.. ....+.++|+.+||.....++++..|||||||||+|||+
T Consensus 81 ~~~~~ig~v~q~~~~~l~-~~tv~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLF-EETVLKDVA-FGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHHhhEEEEecCcchhcc-cchHHHHHH-hHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 147999997421211 112222221 111101111 234577889999996434456789999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+.+|+||||||||+|||+.++..|.++|.++ +.|||+||||++++..+|| ||++|++|+++ +.|+++++.
T Consensus 159 L~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~d-----ri~~l~~G~i~-~~g~~~~~~ 232 (288)
T PRK13643 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYAD-----YVYLLEKGHII-SCGTPSDVF 232 (288)
T ss_pred HHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEE-EECCHHHHH
Confidence 99999999999999999999999999999876 3699999999999999995 99999999997 468888764
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=363.06 Aligned_cols=211 Identities=36% Similarity=0.616 Sum_probs=176.4
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccc-
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL- 572 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~- 572 (723)
.+|+++|+++.|+++ .+|+++||+|.+|++|||||+|||||||||++|+|.+.|++|+|......+++|++|+....
T Consensus 2 ~~i~~~~ls~~~g~~--~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 2 SMITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred ceEEEeeeEEeeCCc--eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 479999999999764 58999999999999999999999999999999999999999999999888999999975321
Q ss_pred -cCccccHHHH------HH----hh------------------CCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHH
Q 048654 573 -LTMEETPVSY------LL----RL------------------HPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGG 623 (723)
Q Consensus 573 -~~~~~~~~~~------~~----~~------------------~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGG 623 (723)
.++.+.++.. +. .. +....+...+.++..+|..+|+... .+++.+||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG 157 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGG 157 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCHH
Confidence 1111111100 00 00 0001112234567788999999865 5789999999
Q ss_pred HHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecC
Q 048654 624 QKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703 (723)
Q Consensus 624 qkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~ 703 (723)
||.||+||++|+.+|+||||||||||||..++.+|.+.|.++.+|||+||||.+|+..+|+ +|+.++.|++..|.
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t-----~I~~ld~g~l~~y~ 232 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVAT-----HILELDRGKLTPYK 232 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhh-----heEEecCCceeEec
Confidence 9999999999999999999999999999999999999999999999999999999999994 99999999999999
Q ss_pred CCHHHHHHHH
Q 048654 704 GTFEEYKEDL 713 (723)
Q Consensus 704 g~~~~~~~~~ 713 (723)
|+++.|.+.-
T Consensus 233 Gny~~~~~~r 242 (530)
T COG0488 233 GNYSSYLEQK 242 (530)
T ss_pred CCHHHHHHHH
Confidence 9999986543
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=340.43 Aligned_cols=209 Identities=27% Similarity=0.375 Sum_probs=166.0
Q ss_pred eEEEEEEEEEcCCCc---ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 495 LLQLIEVSFSYPNRE---DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~---~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
+|+++||++.|++.. ..+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 489999999997421 35899999999999999999999999999999999999999999987652
Q ss_pred -eeEEEEccccccc---cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC-CCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 560 -LRIGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS-HNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 560 -~~ig~~~q~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~-~~~~~~i~~LSGGqkqRv~lAral 634 (723)
..+||++|.+... .++.++.. +..... ........+.+.++++.+||.. ...++++.+|||||||||+|||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~-~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIA-FGPINL-GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred hhceEEEecCchhccccccHHHHHH-hHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 2489999975211 22322221 111111 1100012245788999999961 234567899999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++|+++. .|+++++.
T Consensus 160 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d-----rv~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLAD-----RIIVMNKGKCEL-QGTPREVF 233 (287)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999876 3589999999999999995 999999999974 58887764
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 3
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=349.46 Aligned_cols=207 Identities=28% Similarity=0.425 Sum_probs=171.7
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGR 564 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~ 564 (723)
++|+++||++.|++ ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++++ ..++|
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 3 PYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred cEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 47999999999985 34899999999999999999999999999999999999999999998763 35899
Q ss_pred Ecccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 565 YSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 565 ~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
++|++ ++.+++.+|.. +.+.... .........+.++++.++|.+... +++.+|||||||||+|||||+.+|++||
T Consensus 81 v~Q~~~lfp~~tv~eNi~-~~~~~~~-~~~~~~~~~~~~~l~~l~L~~~~~-~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIA-YGLKNRG-MGRAEVAERVAELLDLVGLPGSER-KYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred EeCCcccCCCCcHHHHHH-HHHHhcC-CCHHHHHHHHHHHHHHcCCCchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99974 34456655532 2222111 000112456889999999986554 6679999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++.+
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d-----~i~vl~~G~i~~-~g~~~~~~~ 224 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMAD-----RIVVMNHGVIEQ-VGTPQEIYR 224 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999999988765 4699999999999999995 999999999975 588877654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=308.04 Aligned_cols=232 Identities=24% Similarity=0.331 Sum_probs=179.2
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
..|+++|+.++||...+|++|||+-..|+++.|||.|||||||+||||+=+. .|..|.|...++++.......-....
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE--~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc--CCCCceEEECCeEEEeeeCCCCCeee
Confidence 3589999999999999999999999999999999999999999999999554 55666776666665311000000001
Q ss_pred HhhHHHHHHHHHHHhhhc-CcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQN-STSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
....+...++..++++.+ ..+ +....+.+++.+..-..-.....++.+++..+|.++|+.+ ..+.++..||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNL-------WsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e-k~~~YP~~LS 154 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNL-------WSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE-KADAYPAHLS 154 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcch-------hHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh-hhhcCccccC
Confidence 112345566767766533 222 2233444554443333334456777889999999999975 4579999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
|||+||++|||||+++|+++|+||||++|||+-+..++..++++ ++|.++|||.+.|+.+++.+|++|++|.|. ..
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE-E~ 233 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE-EE 233 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec-cc
Confidence 99999999999999999999999999999999988887777654 789999999999999999999999999985 56
Q ss_pred CChhhHH
Q 048654 400 GNFDDFE 406 (723)
Q Consensus 400 g~~~~~~ 406 (723)
|++++..
T Consensus 234 G~P~qvf 240 (256)
T COG4598 234 GPPEQVF 240 (256)
T ss_pred CChHHHh
Confidence 8887664
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=346.01 Aligned_cols=217 Identities=24% Similarity=0.348 Sum_probs=167.4
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++||+++|+++.+|+||||+|++|+++||+|||||||||||++|+|+..| ..|+|.+.+..+.....
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~~~~~~------- 110 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPVPARAR------- 110 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEECCcchH-------
Confidence 469999999999999999999999999999999999999999999999998754 56677777765532110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
..+..++++.+.... .....+.+.+.. +..+..........++.++++.+|+.. ..++++.+|||
T Consensus 111 -------~~~~~ig~v~q~~~~------~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~LS~ 175 (340)
T PRK13536 111 -------LARARIGVVPQFDNL------DLEFTVRENLLV-FGRYFGMSTREIEAVIPSLLEFARLES-KADARVSDLSG 175 (340)
T ss_pred -------HHhccEEEEeCCccC------CCCCcHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHcCCch-hhCCChhhCCH
Confidence 112233333221111 011122333221 111212222334567788999999974 45799999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||||||+||+||+.+|+||||||||+|||+.++.+|+++|+++ +.|||++||+++++..+||+|++|++|+++ +.|
T Consensus 176 G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g 254 (340)
T PRK13536 176 GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEG 254 (340)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEc
Confidence 9999999999999999999999999999999999999999875 679999999999999999999999999997 457
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+++
T Consensus 255 ~~~~l 259 (340)
T PRK13536 255 RPHAL 259 (340)
T ss_pred CHHHH
Confidence 76655
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=330.58 Aligned_cols=210 Identities=29% Similarity=0.443 Sum_probs=165.5
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------e
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------L 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------~ 560 (723)
||+++||++.|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 47899999999722 35899999999999999999999999999999999999999999988652 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhh---C---CCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRL---H---PDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
.++|++|... ..+++.++........ . ...........+.++++.+|+.... ++++.+|||||||||+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-YQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHHHHH
Confidence 3789998742 1223332221000000 0 0000011234577899999997544 4677999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++.++|| +|++|++|+++ ..|++++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d-----~v~~l~~G~i~-~~~~~~~ 232 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYAD-----RIVGLKAGEIV-FDGAPSE 232 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC-----eEEEEECCEEE-ecCCHHH
Confidence 999999999999999999999999999999876 3589999999999999995 99999999997 4688877
Q ss_pred HHHH
Q 048654 709 YKED 712 (723)
Q Consensus 709 ~~~~ 712 (723)
+.+.
T Consensus 233 ~~~~ 236 (243)
T TIGR02315 233 LDDE 236 (243)
T ss_pred hChH
Confidence 6443
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=342.85 Aligned_cols=211 Identities=24% Similarity=0.338 Sum_probs=167.3
Q ss_pred CCCeEEEEEEEEEcCCCc---ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------
Q 048654 492 TPPLLQLIEVSFSYPNRE---DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~---~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------- 559 (723)
.+++|+++|++|.|++.. ..+|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|++++.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 457999999999997421 35899999999999999999999999999999999999999999987641
Q ss_pred ------------------eeEEEEccccccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCC
Q 048654 560 ------------------LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIA 618 (723)
Q Consensus 560 ------------------~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~ 618 (723)
..++|++|.....+. ..+....+. +.....+.. ....+.++++.+||......+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~eni~-~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KDTIEKDIM-FGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccc-cchHHHHHH-hhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 137899987421111 123222221 111000111 234577899999996333346678
Q ss_pred CCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEE
Q 048654 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVE 695 (723)
Q Consensus 619 ~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~ 695 (723)
+|||||||||+|||||+.+|+||||||||+|||+.+...+.++|.++ +.|||+||||++++..+|| +|++|+
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ad-----ri~vl~ 250 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVAD-----EVIVMD 250 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC-----EEEEEE
Confidence 99999999999999999999999999999999999999999999876 3699999999999999995 999999
Q ss_pred CCeEEecCCCHHHHH
Q 048654 696 NGTVSRFPGTFEEYK 710 (723)
Q Consensus 696 ~G~i~~~~g~~~~~~ 710 (723)
+|+|+. .|+++++.
T Consensus 251 ~G~i~~-~g~~~~~~ 264 (320)
T PRK13631 251 KGKILK-TGTPYEIF 264 (320)
T ss_pred CCEEEE-eCCHHHHh
Confidence 999974 58887653
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=353.85 Aligned_cols=207 Identities=28% Similarity=0.446 Sum_probs=168.9
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
++|+++||+++|++ ..+|+++||+|.+||+++|+||||||||||||+|+|+++|++|+|++++. .++
T Consensus 2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 47999999999985 35899999999999999999999999999999999999999999998763 248
Q ss_pred EEEcccccc--ccCccccHHHHHHhhCC-CCC--CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 563 GRYSQHFVD--LLTMEETPVSYLLRLHP-DQE--GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 563 g~~~q~~~~--~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
+|++|.... .+++.++... ....+. ... .....+.+.++|+.+|+.... ++++.+|||||||||+|||||+++
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~-~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEM-GRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-DRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHh-ccchhcccccCCCHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHHcC
Confidence 999987432 2333332211 000000 011 111345688899999997544 578899999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+||||||||+|||+.++..++++|+++. .|||++|||++++.++|| |+++|++|+++. .|+++++.
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~ad-----rii~l~~G~iv~-~G~~~ev~ 227 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCD-----ELVLLADGRVRA-AGPPADVL 227 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC-----EEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999999998873 599999999999999995 999999999974 68888754
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=335.57 Aligned_cols=213 Identities=25% Similarity=0.355 Sum_probs=166.8
Q ss_pred CCeEEEEEEEEEcCCC-------cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------
Q 048654 493 PPLLQLIEVSFSYPNR-------EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------ 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~-------~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------ 559 (723)
+++|+++||+++|++. ..++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 4689999999999631 235899999999999999999999999999999999999999999988652
Q ss_pred -----eeEEEEccccccccCccccHHHHH---HhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDLLTMEETPVSYL---LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 -----~~ig~~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|.....+....+....+ .............+.+.++++.+||......+++.+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 248899987432121111211111 111111101112345778999999953333456789999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++ ..|+++
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d-----~i~~l~~G~i~-~~~~~~ 235 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISD-----QVLVMHQGEVV-ERGSTA 235 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcC-----EEEEEECCEEE-ecCCHH
Confidence 9999999999999999999999999999999875 4589999999999999995 99999999997 467777
Q ss_pred HHHH
Q 048654 708 EYKE 711 (723)
Q Consensus 708 ~~~~ 711 (723)
++..
T Consensus 236 ~~~~ 239 (267)
T PRK15112 236 DVLA 239 (267)
T ss_pred HHhc
Confidence 6643
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=326.21 Aligned_cols=210 Identities=32% Similarity=0.447 Sum_probs=175.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
.+++++++|+++||+ ..+++||||+|.+||+++||||||||||||+|+|+|+++|++|+|.+.++ .
T Consensus 2 ~~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 2 TPLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79 (250)
T ss_pred CceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhc
Confidence 368999999999986 45899999999999999999999999999999999999999999998774 2
Q ss_pred eEEEEcccc--ccccCccccHHHHHHh-------hC-CCC--CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 561 RIGRYSQHF--VDLLTMEETPVSYLLR-------LH-PDQ--EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 561 ~ig~~~q~~--~~~~~~~~~~~~~~~~-------~~-~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
.+++.||+. +..+++.+|+...... ++ +.. ......+++.++|+.+||.+.. +.+.++||+|||+||
T Consensus 80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-~~~A~~LsyG~qR~L 158 (250)
T COG0411 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-DRPAGNLSYGQQRRL 158 (250)
T ss_pred cceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-cchhhcCChhHhHHH
Confidence 467788863 4556666665432110 00 000 0011245688899999998655 578899999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCC
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPG 704 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g 704 (723)
.|||||+.+|+|||||||.+||.+.....+.+.|+++. .||++|.||++++..+|| ||+||+.|+++ .+|
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~d-----ri~Vl~~G~~I-AeG 232 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLAD-----RIVVLNYGEVI-AEG 232 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhcc-----EEEeccCCcCc-ccC
Confidence 99999999999999999999999999999999998874 589999999999999995 99999999997 689
Q ss_pred CHHHHHH
Q 048654 705 TFEEYKE 711 (723)
Q Consensus 705 ~~~~~~~ 711 (723)
+|+++.+
T Consensus 233 ~P~eV~~ 239 (250)
T COG0411 233 TPEEVRN 239 (250)
T ss_pred CHHHHhc
Confidence 9998764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=339.56 Aligned_cols=208 Identities=24% Similarity=0.328 Sum_probs=166.0
Q ss_pred eEEEEEEEEEcCCCc---ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 495 LLQLIEVSFSYPNRE---DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~---~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
+|+++||++.|++.. ..+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 588999999997421 35899999999999999999999999999999999999999999988763
Q ss_pred ---eeEEEEcccccc---ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFVD---LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 ---~~ig~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..++|++|.+.. ..++.++.. +....+. .........+.++++.+||......+++.+|||||||||+||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~-~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVE-FGPKNFG-FSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 147899987421 123333321 1111111 10001234578899999996333356789999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYAD-----DVLVLEHGKLIK-HASPKEIF 233 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999998873 589999999999999995 999999999974 57877654
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=328.75 Aligned_cols=227 Identities=25% Similarity=0.369 Sum_probs=172.2
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH-H
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA-V 242 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~-~ 242 (723)
+++++++++++||+-.+++||||++++|++++||||||||||||+++|+|++.| +.|+|.+.++++.+.....+.. .
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhcc
Confidence 458899999999999999999999999999999999999999999999998765 5678888888877654332211 0
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHH-HHHHHHHh--c--CchHHHHHHHHHHHhCCCCccccCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA-ELYEKLQI--L--GSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~--~--~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
+....+...++..++.++|. .+..... .+...+.. . ...+..+++.++|+.+||.+ .++++
T Consensus 81 i~RTFQ~~rlF~~lTVlENv-------------~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-~a~~~ 146 (250)
T COG0411 81 IARTFQITRLFPGLTVLENV-------------AVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-LADRP 146 (250)
T ss_pred ceeecccccccCCCcHHHHH-------------HHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-hhcch
Confidence 11111111222222222111 1110000 00001110 1 12456788999999999974 56899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
..+||+|||+|+.|||||+.+|+|||||||.+||.+.....+.++|+++ +.||++|.||++++..+||||+||+.|
T Consensus 147 A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 147 AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226 (250)
T ss_pred hhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCC
Confidence 9999999999999999999999999999999999999999998888765 479999999999999999999999999
Q ss_pred EEEEecCChhhHHh
Q 048654 394 KLHFYRGNFDDFES 407 (723)
Q Consensus 394 ~i~~~~g~~~~~~~ 407 (723)
+++ ..|++++...
T Consensus 227 ~~I-AeG~P~eV~~ 239 (250)
T COG0411 227 EVI-AEGTPEEVRN 239 (250)
T ss_pred cCc-ccCCHHHHhc
Confidence 986 4699887754
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=343.56 Aligned_cols=211 Identities=27% Similarity=0.368 Sum_probs=168.2
Q ss_pred CCeEEEEEEEEEcCCC--------cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----
Q 048654 493 PPLLQLIEVSFSYPNR--------EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~--------~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----- 559 (723)
+++|+++||++.|+.. ...+|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 4689999999999631 235899999999999999999999999999999999999999999988762
Q ss_pred ---------eeEEEEcccccccc----CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Q 048654 560 ---------LRIGRYSQHFVDLL----TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA 626 (723)
Q Consensus 560 ---------~~ig~~~q~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkq 626 (723)
..++|++|+....+ ++.++.. .....+...........+.++|+.+||.....++++.+|||||+|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE-EPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH-HHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 24899999853222 2222211 111111111111123567899999999643334667999999999
Q ss_pred HHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEec
Q 048654 627 RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702 (723)
Q Consensus 627 Rv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~ 702 (723)
||+|||||+.+|+||||||||++||+.++..++++|.++ +.|||+||||+.++.++|| +|++|++|+|++
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~ad-----rv~vm~~G~ive- 235 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIAD-----EVMVMYLGRCVE- 235 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-
Confidence 999999999999999999999999999999999999775 4699999999999999995 999999999986
Q ss_pred CCCHHHHH
Q 048654 703 PGTFEEYK 710 (723)
Q Consensus 703 ~g~~~~~~ 710 (723)
.|+.+++.
T Consensus 236 ~g~~~~~~ 243 (327)
T PRK11308 236 KGTKEQIF 243 (327)
T ss_pred ECCHHHHh
Confidence 47766654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=327.36 Aligned_cols=201 Identities=29% Similarity=0.417 Sum_probs=158.0
Q ss_pred eEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+|+++||++.|++.. ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 478999999997531 25899999999999999999999999999999999999999999987652
Q ss_pred -eeEEEEccccc----cccCccccHHHHHHhhCCCCCCCcHHHH-HHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 -LRIGRYSQHFV----DLLTMEETPVSYLLRLHPDQEGLSKQEA-VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 -~~ig~~~q~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..++|++|... ..+++.++... ....+........... +.++++.+++......+++.+|||||||||+||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAE-PLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHH-HHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 24889998742 12333333211 1111111000001122 24788999995333346779999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~G~i~~ 226 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIAD-----RVAVMYAGKIVE 226 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC-----eEEEEeCCEEEe
Confidence 99999999999999999999999999999876 4689999999999999995 999999999864
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=337.36 Aligned_cols=206 Identities=27% Similarity=0.380 Sum_probs=165.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
++|+++|+++.|++. ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 3 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred ceEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 479999999999632 35899999999999999999999999999999999999999999998763 248
Q ss_pred EEEcccccc---ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 563 GRYSQHFVD---LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 563 g~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
+|++|.+.. ..++.++.. +..... ..........+..+++.+||.... ++++.+|||||||||+|||||+.+|+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~-~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVA-FGPVNM-GLDKDEVERRVEEALKAVRMWDFR-DKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred EEEecChhhhhccCcHHHHHH-hhHHHc-CCCHHHHHHHHHHHHHHCCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999997421 123322221 101110 110001234578899999997544 46779999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||||||||++||+.++..+.++|+++ +.|||+||||++++.++|| ||++|++|+++. .|+++++
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~ 225 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWAD-----QVIVLKEGRVLA-EGDKSLL 225 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHh
Confidence 99999999999999999999999877 3699999999999999995 999999999974 5777654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=330.25 Aligned_cols=206 Identities=30% Similarity=0.399 Sum_probs=165.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++||++.|++ ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 4889999999975 35899999999999999999999999999999999999999999988763 248999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCC--CCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQ--EGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|.+. ..+++.++... ........ ... ...+.+..+++.+||.... ++++.+|||||||||+|||||+.+|+|
T Consensus 80 ~q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 80 FQHYALFRHMTVFDNVAF-GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-DRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred ecCCcccCCCCHHHHHhh-hhhhccccccCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 98742 12233333211 11111100 000 1124567889999997544 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~ 225 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD-----RVVVMNKGRIEQ-VGTPDEVY 225 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEECCeEEE-ecCHHHHh
Confidence 9999999999999999999999876 3589999999999999995 999999999974 57877664
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=331.85 Aligned_cols=195 Identities=31% Similarity=0.358 Sum_probs=161.5
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------eeEEEEc
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------LRIGRYS 566 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------~~ig~~~ 566 (723)
.++|+++||++.|++. .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 10 ~~~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 10 GTPLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CCcEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 4679999999999753 5899999999999999999999999999999999999999999988663 2589999
Q ss_pred cccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC
Q 048654 567 QHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646 (723)
Q Consensus 567 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP 646 (723)
|...- ....++.+.+...... .....+.++++.+||.... ++++.+|||||||||+|||+|+.+|++||||||
T Consensus 88 q~~~l--~~~~tv~enl~~~~~~----~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqkqrl~laraL~~~p~lllLDEP 160 (257)
T PRK11247 88 QDARL--LPWKKVIDNVGLGLKG----QWRDAALQALAAVGLADRA-NEWPAALSGGQKQRVALARALIHRPGLLLLDEP 160 (257)
T ss_pred cCccC--CCCCcHHHHHHhcccc----hHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 97421 1112323222111111 1235678899999997654 466799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 647 TNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 647 T~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+|+.
T Consensus 161 t~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d-----~i~~l~~G~i~~ 214 (257)
T PRK11247 161 LGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMAD-----RVLLIEEGKIGL 214 (257)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEe
Confidence 9999999999999999775 4699999999999999995 999999999974
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=328.73 Aligned_cols=209 Identities=31% Similarity=0.428 Sum_probs=165.1
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------ee
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------LR 561 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------~~ 561 (723)
|+++||++.|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 35899999999999999999999999999999999999999999987652 24
Q ss_pred EEEEccccc--cccCccccHHHHHHhh---CC---CCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRL---HP---DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
++|++|... ..+++.++........ +. ........+.+.++++.+++.... .+++.+|||||||||+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-YQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-CCCcccCCHHHHHHHHHHHH
Confidence 789998642 2233333321100000 00 000011234577899999997543 46779999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d-----~v~~l~~G~i~~-~~~~~~~ 232 (241)
T cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYAD-----RIVGLKDGRIVF-DGPPAEL 232 (241)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEe-ecCHHHh
Confidence 99999999999999999999999999999876 3689999999999999995 999999999974 5888776
Q ss_pred HHH
Q 048654 710 KED 712 (723)
Q Consensus 710 ~~~ 712 (723)
.+.
T Consensus 233 ~~~ 235 (241)
T cd03256 233 TDE 235 (241)
T ss_pred hHH
Confidence 543
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=316.87 Aligned_cols=207 Identities=29% Similarity=0.415 Sum_probs=166.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-----ceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE-----GEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~-----G~I~~~~~-------- 559 (723)
.+.++++||++.|++. .+|++||+.|++++++|||||+|||||||||+|..+..... |+|.+.++
T Consensus 5 ~~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4678999999999864 58999999999999999999999999999999999887664 89987663
Q ss_pred -----eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv~l 630 (723)
.++|+++|.+.++ +++.+|+ .+..+.+.... ..-.+.++..|....|.+. ..+++...||||||||++|
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNV-ayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNV-AYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHH-HHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 3689999976432 3444553 23333332211 1123557777877777542 2234567899999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|+||||||||++|||.+...|.++|.+++ -|||+|||++..+.+++| +++++..|++++| |+-+.
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD-----~taFf~~G~LvE~-g~T~~ 234 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSD-----YTAFFYLGELVEF-GPTDK 234 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhH-----hhhhhcccEEEEE-cCHHh
Confidence 999999999999999999999999999999999986 599999999999999995 8999999999987 44444
Q ss_pred H
Q 048654 709 Y 709 (723)
Q Consensus 709 ~ 709 (723)
+
T Consensus 235 i 235 (253)
T COG1117 235 I 235 (253)
T ss_pred h
Confidence 4
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=333.15 Aligned_cols=209 Identities=24% Similarity=0.364 Sum_probs=168.2
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+.+|+++||++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 457999999999975 35899999999999999999999999999999999999999999987652
Q ss_pred -----------eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Q 048654 560 -----------LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA 626 (723)
Q Consensus 560 -----------~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkq 626 (723)
..++|++|+.. ..+++.++.......... .........+.++++.+|+......+++.+|||||||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG-LSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 24789998742 223333332211111111 1001123457789999999765434667999999999
Q ss_pred HHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecC
Q 048654 627 RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703 (723)
Q Consensus 627 Rv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~ 703 (723)
||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++|+++. .
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d-----~i~~l~~G~i~~-~ 233 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS-----HVIFLHQGKIEE-E 233 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC-----EEEEEECCEEEE-e
Confidence 999999999999999999999999999999999998876 3689999999999999995 999999999974 5
Q ss_pred CCHHHHH
Q 048654 704 GTFEEYK 710 (723)
Q Consensus 704 g~~~~~~ 710 (723)
|+++++.
T Consensus 234 ~~~~~~~ 240 (257)
T PRK10619 234 GAPEQLF 240 (257)
T ss_pred CCHHHhh
Confidence 7877764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=326.26 Aligned_cols=205 Identities=29% Similarity=0.420 Sum_probs=164.1
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce----------eEEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL----------RIGRY 565 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~----------~ig~~ 565 (723)
|+++||++.|++...++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 46899999997522358999999999999999999999999999999999999999999887642 47899
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|... ..+++.++.. +....+.. ......+.+.++++.++|.... ++++.+|||||+|||+|||||+.+|++|||
T Consensus 81 ~q~~~~~~~~tv~~~l~-~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFDALFDELTVREHLR-FYARLKGL-PKSEIKEEVELLLRVLGLTDKA-NKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcCCccccCCHHHHHH-HHHHHcCC-CHHHHHHHHHHHHHHcCCHHHH-hChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98642 2233333321 11111111 0001234577899999997544 466799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||||++||+.+.+.+.++|+++. .|||++|||++++..+|| ++++|++|+++. .|+++++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~g~i~~-~~~~~~~ 219 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD-----RIAIMSDGKLRC-IGSPQEL 219 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC-----EEEEEECCEEEe-cCCHHHc
Confidence 99999999999999999998875 589999999999999995 999999999974 5776553
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=345.37 Aligned_cols=217 Identities=21% Similarity=0.335 Sum_probs=169.0
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
+.+|+++|+++.|+++.+|+|+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.+..+......
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~----- 76 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDVTHRSIQ----- 76 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHH-----
Confidence 4479999999999999999999999999999999999999999999999998754 566777777665432110
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
...++++.+.... .....+.+++..... .......+...++.++++.+|+.. +.++++.+||
T Consensus 77 ----------~r~ig~vfQ~~~l------fp~~tv~eNi~~~l~-~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LS 138 (351)
T PRK11432 77 ----------QRDICMVFQSYAL------FPHMSLGENVGYGLK-MLGVPKEERKQRVKEALELVDLAG-FEDRYVDQIS 138 (351)
T ss_pred ----------HCCEEEEeCCccc------CCCCCHHHHHHHHHh-HcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCC
Confidence 1122222221100 112233444433221 112334455678999999999974 5689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++||+..+.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++.
T Consensus 139 gGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~- 217 (351)
T PRK11432 139 GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ- 217 (351)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-
Confidence 99999999999999999999999999999999999998888754 6799999999999999999999999999975
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
.|+++++
T Consensus 218 ~g~~~~~ 224 (351)
T PRK11432 218 IGSPQEL 224 (351)
T ss_pred EcCHHHH
Confidence 4776654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=326.85 Aligned_cols=200 Identities=29% Similarity=0.395 Sum_probs=160.4
Q ss_pred CCeEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------
Q 048654 493 PPLLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------- 559 (723)
.++|+++||++.|++.. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 46899999999997432 35899999999999999999999999999999999999999999998762
Q ss_pred ----eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 ----~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..++|++|... ..+++.++... ...... .......+.+.++++.+||.... .+++.+|||||||||+||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAM-PLLIGK-KKPAEINSRALEMLAAVGLEHRA-NHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHH-HHHhcC-CCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHH
Confidence 24899999742 22333333211 111111 10011234578899999997554 45678999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+| ++++|++|+|+.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~------~~~~l~~G~i~~ 225 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS------RQLEMRDGRLTA 225 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhC------EEEEEECCEEEE
Confidence 99999999999999999999999999999875 358999999999998653 899999999974
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=331.13 Aligned_cols=209 Identities=26% Similarity=0.363 Sum_probs=166.3
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL------------ 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~------------ 560 (723)
.++|+++|+++.|+++ .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 4 ~~~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 4 QPLLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred CceEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 4589999999999753 58999999999999999999999999999999999999999999876642
Q ss_pred --------eEEEEcccccccc----CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 561 --------RIGRYSQHFVDLL----TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 561 --------~ig~~~q~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
.++|++|+....+ ++.++....+......... .....+.++++.|++......+++.+|||||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl 160 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYG-DIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL 160 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH
Confidence 3789998753211 2222322111111100000 12345678899999964233467799999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCC
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPG 704 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g 704 (723)
+|||||+.+|+||||||||+|||+.+...+.+.|+++ +.|||+||||++++..+|| +|++|++|+++. .|
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d-----~i~~l~~g~i~~-~~ 234 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH-----RLLVMKQGRVVE-SG 234 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC-----EEEEEECCEEEE-eC
Confidence 9999999999999999999999999999999998765 4699999999999999995 999999999974 57
Q ss_pred CHHHHH
Q 048654 705 TFEEYK 710 (723)
Q Consensus 705 ~~~~~~ 710 (723)
+++++.
T Consensus 235 ~~~~~~ 240 (258)
T PRK11701 235 LTDQVL 240 (258)
T ss_pred CHHHHh
Confidence 777654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=348.93 Aligned_cols=206 Identities=27% Similarity=0.348 Sum_probs=168.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++|+++.|++. .+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence 58999999999753 5899999999999999999999999999999999999999999998663 248999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|.+. ..+++.++.... ..... .........+.++++.+||.... ++++.+|||||||||+|||||+.+|+||||
T Consensus 81 ~Q~~~l~~~~tv~eni~~~-~~~~~-~~~~~~~~~~~~~l~~lgL~~~~-~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFG-LKLAG-AKKEEINQRVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred eCCcccCCCCCHHHHHHhH-HhhcC-CCHHHHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99742 334454443211 11111 00001234678899999997544 467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d-----~i~vl~~G~i~~-~g~~~~i~~ 223 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD-----KIVVLDAGRVAQ-VGKPLELYH 223 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999988775 4689999999999999995 999999999975 578877643
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=338.24 Aligned_cols=209 Identities=29% Similarity=0.413 Sum_probs=165.7
Q ss_pred eEEEEEEEEEcCCCc---ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 495 LLQLIEVSFSYPNRE---DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~---~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
.|+++||++.|++.. ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996421 35899999999999999999999999999999999999999999988652
Q ss_pred ---eeEEEEccccccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 ---~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..+||++|++...+. ..++...+. +.....+.. ....+.++|..+||.....++++.+|||||||||+||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~e~i~-~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLF-EDTVEREII-FGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HHHhheEEEecChHhccc-hhhHHHHHH-hhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 147999997422111 112222221 110001111 234577899999996333446779999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++
T Consensus 160 L~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~d-----ri~~l~~G~i~~-~g~~~~~ 233 (286)
T PRK13646 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYAD-----EVIVMKEGSIVS-QTSPKEL 233 (286)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999875 3699999999999999995 999999999974 5787775
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
..
T Consensus 234 ~~ 235 (286)
T PRK13646 234 FK 235 (286)
T ss_pred Hh
Confidence 43
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=328.92 Aligned_cols=205 Identities=31% Similarity=0.443 Sum_probs=164.2
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------eeEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LRIG 563 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ig 563 (723)
|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999975 35899999999999999999999999999999999999999999987652 2488
Q ss_pred EEccccc--cccCccccHHHHHHhhCCCC---------CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 564 RYSQHFV--DLLTMEETPVSYLLRLHPDQ---------EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 564 ~~~q~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
|++|.+. ..+++.++.... ....... ........+.++++.+|+.... ++++.+|||||||||+|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVA-AQARTGSGLLLARARREEREARERAEELLERVGLADLA-DRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHH-HhhccccccccccccccHHHHHHHHHHHHHHcCccchh-hCChhhCCHHHHHHHHHHH
Confidence 9998742 223343332111 1111000 0001234577899999997544 4678999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||+.+|++|||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+|+ ..|+++++
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d-----~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLAD-----RVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC-----EEEEEeCCEEE-eecCHHHh
Confidence 9999999999999999999999999999998763 589999999999999995 99999999997 45777765
Q ss_pred H
Q 048654 710 K 710 (723)
Q Consensus 710 ~ 710 (723)
.
T Consensus 231 ~ 231 (236)
T cd03219 231 R 231 (236)
T ss_pred c
Confidence 3
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=346.39 Aligned_cols=215 Identities=20% Similarity=0.295 Sum_probs=167.2
Q ss_pred ceEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAA-RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y-~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++|++++| +++.+|+|+||+|++|++++|+|||||||||||++|+|+.. |.+|+|.+.+..+......
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~------ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPA------ 74 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHH------
Confidence 58999999999 78899999999999999999999999999999999999865 4567787777765432110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
...++++.+.... .....+.+++..... ...........++.++++.+|+.+ ..++++.+|||
T Consensus 75 ---------~r~ig~v~Q~~~l------fp~~tv~eNi~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSg 137 (356)
T PRK11650 75 ---------DRDIAMVFQNYAL------YPHMSVRENMAYGLK-IRGMPKAEIEERVAEAARILELEP-LLDRKPRELSG 137 (356)
T ss_pred ---------HCCEEEEeCCccc------cCCCCHHHHHHhHHh-hcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCH
Confidence 0122222221110 112233344432221 111233445678899999999974 56899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
||||||+|||||+.+|+||||||||++||+.++..|.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .
T Consensus 138 Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~ 216 (356)
T PRK11650 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-I 216 (356)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-E
Confidence 9999999999999999999999999999999999998888754 6799999999999999999999999999975 4
Q ss_pred CChhhH
Q 048654 400 GNFDDF 405 (723)
Q Consensus 400 g~~~~~ 405 (723)
|+++++
T Consensus 217 g~~~~~ 222 (356)
T PRK11650 217 GTPVEV 222 (356)
T ss_pred CCHHHH
Confidence 777665
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=325.79 Aligned_cols=195 Identities=35% Similarity=0.459 Sum_probs=155.7
Q ss_pred EEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------
Q 048654 496 LQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------- 559 (723)
Q Consensus 496 l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------- 559 (723)
|+++||++.|++.. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997521 35899999999999999999999999999999999999999999987652
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..++|++|... ..+++.++... ..... ........+.+.++++.+||.... ++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVEL-PLLLA-GVPKKERRERAEELLERVGLGDRL-NHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHH-HHhhc-CCCHHHHHHHHHHHHHHcCCchhh-hcChhhcCHHHHHHHHHHHHHcc
Confidence 24889998642 22333333211 11111 110001234578899999997554 46679999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++. +|| +|++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d-----~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YAD-----RIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhc-----EEEEeeCCcC
Confidence 99999999999999999999999999876 358999999999987 884 9999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=332.81 Aligned_cols=223 Identities=22% Similarity=0.318 Sum_probs=165.7
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++||+++|+++++|+|+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.++.+........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~---- 79 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENIPAMSRSRL---- 79 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccChhhH----
Confidence 469999999999999999999999999999999999999999999999998754 45667776665432211100
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
..++..++++.+.... .....+.+++.................++.++|+.+|+.. ..++++.+|||
T Consensus 80 ------~~~~~~i~~v~q~~~~------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSg 146 (269)
T PRK11831 80 ------YTVRKRMSMLFQSGAL------FTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-AAKLMPSELSG 146 (269)
T ss_pred ------HHHhhcEEEEeccccc------CCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCH
Confidence 0112223333221110 0111223333221111111122334567888999999974 45789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++ +.
T Consensus 147 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~ 225 (269)
T PRK11831 147 GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AH 225 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-Ee
Confidence 9999999999999999999999999999999999999988764 579999999999999999999999999996 45
Q ss_pred CChhhHH
Q 048654 400 GNFDDFE 406 (723)
Q Consensus 400 g~~~~~~ 406 (723)
|+.+++.
T Consensus 226 g~~~~~~ 232 (269)
T PRK11831 226 GSAQALQ 232 (269)
T ss_pred CCHHHHh
Confidence 7766553
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=339.18 Aligned_cols=206 Identities=23% Similarity=0.413 Sum_probs=169.9
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIGR 564 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig~ 564 (723)
+++++|++++|++ ..+|+|+||+|.+|+++||+|||||||||||++|+|+++|++|+|.+.+. ..+||
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 4889999999975 35899999999999999999999999999999999999999999998763 24899
Q ss_pred Eccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 565 YSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 565 ~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
++|... ..+++.++.. +....+.. ........+..+++.|||.... ++++..|||||||||+||+||+.+|++||
T Consensus 80 ~~q~~~l~~~~tv~e~l~-~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQ-FIAGIYGM-KGQLLKQRVEEMIELVGLRPEQ-HKKIGQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred ecCCCCCCCCCcHHHHHH-HHHHHcCC-CHHHHHHHHHHHHHHCCCchHh-cCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999742 2233433321 11112110 0001234678899999998654 46789999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||+|||+.++..+.++|+++. .|||++||+++++.++|| ||++|++|+++ +.|+.+++..
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d-----~i~~l~~G~i~-~~g~~~~~~~ 221 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICD-----RVIIINKGKIV-ADKKLDELSA 221 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEE-EeCCHHHHHH
Confidence 999999999999999999999884 689999999999999995 99999999997 5689888754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=341.46 Aligned_cols=226 Identities=21% Similarity=0.240 Sum_probs=167.9
Q ss_pred ceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC--CCcEEEEEeeeeecCCChHH
Q 048654 165 DITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV--PKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~--~~~~~i~~~~q~~~~~~~~~ 238 (723)
+|+++||++.|++ ..+|+||||+|.+||++||||+||||||||+++|+|+..+. +..|+|.+.++++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 57999999999999999999999999999999999986531 35688888877664332221
Q ss_pred HHHHHHhhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc--cccC
Q 048654 239 IQAVVSAHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK--EMQG 315 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~ 315 (723)
+. .++ ..++++.+.... .......+...+.+...........+..+++.++|+.+||.+ ...+
T Consensus 83 ~~----------~~r~~~i~~v~Q~~~~----~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~ 148 (326)
T PRK11022 83 RR----------NLVGAEVAMIFQDPMT----SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLD 148 (326)
T ss_pred HH----------HHhCCCEEEEecCchh----hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 11 111 123333221100 000111222222222211111223445678999999999963 3457
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
+++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|.
T Consensus 149 ~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~ 228 (326)
T PRK11022 149 VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMY 228 (326)
T ss_pred CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 899999999999999999999999999999999999999999999988764 5799999999999999999999999
Q ss_pred CCEEEEecCChhhH
Q 048654 392 DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 ~G~i~~~~g~~~~~ 405 (723)
+|+|+. .|+.+++
T Consensus 229 ~G~ive-~g~~~~~ 241 (326)
T PRK11022 229 AGQVVE-TGKAHDI 241 (326)
T ss_pred CCEEEE-ECCHHHH
Confidence 999975 4776554
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=331.02 Aligned_cols=206 Identities=24% Similarity=0.386 Sum_probs=165.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------- 559 (723)
+|+++||++.|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 79999999999753 5899999999999999999999999999999999999999999987542
Q ss_pred ----eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 ----~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..++|++|... ...++.++..... ............+.+.++++.+||.... ++++.+|||||||||+||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGP-VIVKGEPKEEATARARELLAKVGLAGKE-TSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCcchh-hCChhhCChHHHHHHHHHHH
Confidence 24789998742 2233333322111 1111110001234577889999997543 46779999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~ 232 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVAD-----RAIFMDQGRIVE-QGPAKALF 232 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC-----EEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999999999876 3689999999999999995 999999999974 57777754
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=332.66 Aligned_cols=209 Identities=25% Similarity=0.380 Sum_probs=166.4
Q ss_pred eEEEEEEEEEcCCC-------cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------
Q 048654 495 LLQLIEVSFSYPNR-------EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~-------~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------- 559 (723)
+|+++||++.|++. ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 68999999999631 246899999999999999999999999999999999999999999988652
Q ss_pred ------eeEEEEccccc----cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHH
Q 048654 560 ------LRIGRYSQHFV----DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 560 ------~~ig~~~q~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~ 629 (723)
..++|++|... ..+++.++.... ...............+.++++.+|+.....++++..|||||||||+
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEP-LRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 14899999742 123333332111 1111111111123567889999999633334677999999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCC
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~ 705 (723)
|||||+.+|+||||||||++||+.+...+.++|.++ +.|||+||||++++..+|| ++++|++|+++. .|+
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d-----~i~~l~~G~i~~-~g~ 234 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQ-----RVAVMDKGQIVE-ECD 234 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhc-----EEEEEeCCEEEE-ECC
Confidence 999999999999999999999999999999999875 4699999999999999995 999999999974 578
Q ss_pred HHHHH
Q 048654 706 FEEYK 710 (723)
Q Consensus 706 ~~~~~ 710 (723)
++++.
T Consensus 235 ~~~~~ 239 (265)
T TIGR02769 235 VAQLL 239 (265)
T ss_pred HHHHc
Confidence 77664
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=322.84 Aligned_cols=197 Identities=25% Similarity=0.375 Sum_probs=159.2
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
|+++|+++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEe
Confidence 4689999999753 5899999999999999999999999999999999999999999988653 2489999
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|... ..+++.++.... ..... .......+.+..+++.+|+.... ++++.+|||||||||+|||||+.+|+|||||
T Consensus 79 q~~~~~~~~tv~~~l~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 79 QNYALYPHMTVYDNIAFG-LKLRK-VPKDEIDERVREVAELLQIEHLL-DRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred cChhhccCCCHHHHHHHH-HHhcC-CCHHHHHHHHHHHHHHcCCHHHH-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8742 122333332111 11111 10001234577889999997544 4677999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEec
Q 048654 645 EPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~ 702 (723)
|||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++.+
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d-----~i~~l~~g~~~~~ 212 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMAD-----RIAVMNDGQIQQI 212 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC-----eEEEEECCEEEec
Confidence 999999999999999999875 4689999999999999995 9999999999753
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=324.23 Aligned_cols=199 Identities=25% Similarity=0.372 Sum_probs=161.1
Q ss_pred eEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeE
Q 048654 495 LLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRI 562 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~i 562 (723)
+|+++|+++.|++.. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 478999999997531 15899999999999999999999999999999999999999999988763 248
Q ss_pred EEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 563 GRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 563 g~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++|... ..+++.++.... ...+. .........+.++++.+|+.... .+++.+|||||||||+|||||+.+|++
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYF-AGLYG-LKGDELTARLEELADRLGMEELL-DRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHH-HHHcC-CCHHHHHHHHHHHHHHcCCHHHH-hhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 89998742 223333332111 11111 10001234678899999997544 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|||||||++||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++.
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d-----~i~~l~~G~i~~ 216 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCD-----RVVVLHRGRVVY 216 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcC-----EEEEEECCEEee
Confidence 9999999999999999999999887 3699999999999999995 999999999964
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=347.12 Aligned_cols=209 Identities=28% Similarity=0.412 Sum_probs=171.6
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeE
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRI 562 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~i 562 (723)
..++|+++|+++.|++ ..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++++ ..+
T Consensus 11 ~~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 11 LSPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CCceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 3568999999999975 34899999999999999999999999999999999999999999998764 258
Q ss_pred EEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 563 GRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 563 g~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++|++ +..+++.+|+.. .+.... .........+.++++.++|.+... +++.+|||||||||+|||||+.+|+|
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~-~l~~~~-~~~~~~~~~~~~~l~~~~l~~~~~-~~p~~LSgGq~QRVaLARaL~~~P~l 165 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAF-GLRMQK-TPAAEITPRVMEALRMVQLEEFAQ-RKPHQLSGGQQQRVAIARAVVNKPKV 165 (375)
T ss_pred EEEecCcccCCCCCHHHHHHH-HHhhcC-CCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999974 334455555322 111111 000012346788999999986554 56799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||++||+.++..+.+.|+++ +.|||+||||.+++..+|| +|++|++|+|+. .|+++++..
T Consensus 166 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laD-----ri~vl~~G~i~~-~g~~~~i~~ 234 (375)
T PRK09452 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD-----RIVVMRDGRIEQ-DGTPREIYE 234 (375)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999999988775 4699999999999999995 999999999985 478877643
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=338.64 Aligned_cols=216 Identities=25% Similarity=0.335 Sum_probs=164.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+|+||+|++|+++||+|||||||||||++|+|+..| ..|+|.+.+.++.... .
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~-~------- 73 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPVPSRA-R------- 73 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcccH-H-------
Confidence 58999999999999999999999999999999999999999999999998654 5667777665542110 0
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
..+..++++.+.... .....+.+.+... .............++.++++.+|+.. ..++++.+||||
T Consensus 74 ------~~~~~i~~v~q~~~~------~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~~LSgG 139 (303)
T TIGR01288 74 ------LARVAIGVVPQFDNL------DPEFTVRENLLVF-GRYFGMSTREIEAVIPSLLEFARLES-KADVRVALLSGG 139 (303)
T ss_pred ------HHhhcEEEEeccccC------CcCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHCCChh-HhcCchhhCCHH
Confidence 112223333221111 0111223333211 11111222334566788999999974 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|+
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~ 218 (303)
T TIGR01288 140 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGR 218 (303)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcC
Confidence 999999999999999999999999999999999999999875 679999999999999999999999999996 4577
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+++
T Consensus 219 ~~~~ 222 (303)
T TIGR01288 219 PHAL 222 (303)
T ss_pred HHHH
Confidence 6554
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=323.44 Aligned_cols=207 Identities=26% Similarity=0.364 Sum_probs=156.0
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.++.+..... .
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~--~------ 70 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTGVPP--E------ 70 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCcCch--h------
Confidence 5789999999989999999999999999999999999999999999998654 45677776665432110 0
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
...++++.+.... .....+.+++..... ...........++.++++.+|+.. ..++++.+|||||
T Consensus 71 -------~~~i~~v~q~~~~------~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~ 135 (213)
T cd03259 71 -------RRNIGMVFQDYAL------FPHLTVAENIAFGLK-LRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQ 135 (213)
T ss_pred -------hccEEEEcCchhh------ccCCcHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHH
Confidence 0111111111000 001122222211111 111122334567889999999974 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 136 ~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 136 QQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999764 5799999999999999999999999999863
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=327.41 Aligned_cols=204 Identities=31% Similarity=0.410 Sum_probs=161.3
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCcceEEECCc-----------
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL-----SPTEGEVRRSQK----------- 559 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~-----~p~~G~I~~~~~----------- 559 (723)
|+++||++.|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+++.
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4689999999753 5899999999999999999999999999999999999 999999988663
Q ss_pred --eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCC-CCCCCHHHHHHHHHHHHHc
Q 048654 560 --LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP-IAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 560 --~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~-i~~LSGGqkqRv~lAral~ 635 (723)
..++|++|...- .+++.++.... .............+.+..+++.+|+.......+ +.+|||||||||+|||||+
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYG-LRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA 157 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhH-HHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence 147899987421 22333322111 111110000002345778999999975443333 5899999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
.+|++|||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++. .|++++
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~ 226 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVAD-----RTAFLLNGRLVE-FGPTEQ 226 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCC-----EEEEEeCCEEEE-ecCccc
Confidence 9999999999999999999999999998874 589999999999999995 999999999975 466543
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=346.28 Aligned_cols=206 Identities=23% Similarity=0.372 Sum_probs=169.7
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCc--ceEEECCc---------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE--GEVRRSQK---------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~--G~I~~~~~---------~~ig 563 (723)
.|+++||++.|++ ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++ |+|.+++. ..++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 4789999999975 358999999999999999999999999999999999999999 99998763 3589
Q ss_pred EEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 564 RYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 564 ~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
|++|++ +..+++.+|+. +.+.... .........+.++++.++|.+.. ++++.+|||||||||+|||||+.+|+||
T Consensus 83 ~vfQ~~~l~p~~tv~enl~-~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~-~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVA-FGLRAQK-MPKADIAERVADALKLVGLGDAA-AHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred EEECCcccCCCCcHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHhcCCCchh-hCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999974 33445555532 2122111 10011234678899999998655 4677999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHc-----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDEF-----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~~-----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||||++||+.++..+.+.|+++ +.|+|+||||++++..+|| +|++|++|+++. .|+++++..
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~d-----ri~vl~~G~i~~-~g~~~~~~~ 228 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLAD-----KAGIMKDGRLAA-HGEPQALYD 228 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 999999999999999999988764 4589999999999999995 999999999975 588887654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=334.85 Aligned_cols=205 Identities=26% Similarity=0.360 Sum_probs=164.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------ee
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------LR 561 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------~~ 561 (723)
||+++||++.|++. .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ml~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEcCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 58899999999753 5899999999999999999999999999999999999999999987653 14
Q ss_pred EEEEccccccc---cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 562 IGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 562 ig~~~q~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
++|++|..... .++.++. .+...... .........+..+++.+|+.... ++++.+|||||||||+|||||+.+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l-~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl~laraL~~~p 155 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDI-AFSLRNLG-VPEAEITRRVDEALTLVDAQHFR-HQPIQCLSHGQKKRVAIAGALVLQA 155 (271)
T ss_pred eEEEeeChhhccccccHHHHH-HHHHHHcC-CCHHHHHHHHHHHHHHcCCHhHh-cCCchhCCHHHHHHHHHHHHHHcCC
Confidence 78999874211 1222221 11111111 00001124567889999997544 4678999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++. .|+++++.
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~ 224 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISD-----AVYVLRQGQILT-HGAPGEVF 224 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999886 3589999999999999995 999999999974 57777654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=369.83 Aligned_cols=210 Identities=25% Similarity=0.434 Sum_probs=171.9
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccc-c
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL-L 573 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~-~ 573 (723)
||.++||+++|+++ .+|+||||+|.+|+++||+|||||||||||++|+|+++|++|+|.+.+...++|++|..... .
T Consensus 1 ~i~i~nls~~~g~~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVR--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred CEEEEEEEEEeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 58899999999863 58999999999999999999999999999999999999999999998877899998853111 1
Q ss_pred CccccHHH------HH-------------------HhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 574 TMEETPVS------YL-------------------LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 574 ~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
+....... .+ ...+....+.....++..+|..+||.....++++.+|||||||||
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv 158 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL 158 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH
Confidence 11000000 00 000000001122356788999999974344578899999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
+||++|+.+|+||||||||||||+.++..|.+.|.++++|||+||||++++..+|| +|++|++|+++.|.|++..
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d-----~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVD-----KIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcC-----EEEEEeCCEEEEecCCHHH
Confidence 99999999999999999999999999999999999999999999999999999995 9999999999888999988
Q ss_pred HHH
Q 048654 709 YKE 711 (723)
Q Consensus 709 ~~~ 711 (723)
|..
T Consensus 234 ~~~ 236 (638)
T PRK10636 234 FEV 236 (638)
T ss_pred HHH
Confidence 864
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=335.60 Aligned_cols=210 Identities=27% Similarity=0.416 Sum_probs=167.8
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+++|+++||++.|++. ..+|++|||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 3 DYILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred CceEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 4689999999999632 35899999999999999999999999999999999999999999988763
Q ss_pred eeEEEEccccccccCccccHHHHHHh--hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 560 LRIGRYSQHFVDLLTMEETPVSYLLR--LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 560 ~~ig~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
..++|++|.+...+ ...+....+.. .............+..+++.+||.... ++++.+|||||||||+|||||+.+
T Consensus 82 ~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrl~laraL~~~ 159 (283)
T PRK13636 82 ESVGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRVAIAGVLVME 159 (283)
T ss_pred hhEEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-hCCcccCCHHHHHHHHHHHHHHcC
Confidence 24899999752111 11122222211 000110001234578899999997544 467899999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| ||++|++|+++ +.|+++++..
T Consensus 160 p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~d-----ri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCD-----NVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999998876 4599999999999999995 99999999997 4688877543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=323.57 Aligned_cols=198 Identities=31% Similarity=0.400 Sum_probs=159.3
Q ss_pred EEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------eeEEEEcc
Q 048654 496 LQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------LRIGRYSQ 567 (723)
Q Consensus 496 l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------~~ig~~~q 567 (723)
|+++|+++.|++.. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999997521 35899999999999999999999999999999999999999999998763 35899998
Q ss_pred ccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEecc
Q 048654 568 HFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645 (723)
Q Consensus 568 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDE 645 (723)
... ..+++.++... ...... .........+..+++.+||.... .+++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QDALLPWLTVLDNVAL-GLELQG-VPKAEARERAEELLELVGLSGFE-NAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred ccccccCCCHHHHHHH-HHHHcC-CCHHHHHHHHHHHHHHcCChhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 642 22333333211 111111 00001234678899999997544 45679999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEE--CCeEEe
Q 048654 646 PTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVE--NGTVSR 701 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~--~G~i~~ 701 (723)
||+|||+.++..+.++|+++ +.|||+||||++++..+|| ++++|+ +|+|+.
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~~~G~i~~ 214 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD-----RVVVLSARPGRIVA 214 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC-----EEEEEECCCCEEEE
Confidence 99999999999999999875 3589999999999999995 999999 799974
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=326.02 Aligned_cols=212 Identities=26% Similarity=0.409 Sum_probs=160.1
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..| .+|+|.+.+..+... ..
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~-~~-------- 69 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVRE-PR-------- 69 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcC-hH--------
Confidence 5789999999999999999999999999999999999999999999998654 456777666544221 10
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.++..++++.+.... .....+.+++.... ............++.++++.+|+.. ..++++.+|||||
T Consensus 70 -----~~~~~i~~~~q~~~~------~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 136 (220)
T cd03265 70 -----EVRRRIGIVFQDLSV------DDELTGWENLYIHA-RLYGVPGAERRERIDELLDFVGLLE-AADRLVKTYSGGM 136 (220)
T ss_pred -----HHhhcEEEecCCccc------cccCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhCCHHH
Confidence 011222222221110 01112223322211 1111222344567899999999974 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.. ++
T Consensus 137 ~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~-~~ 215 (220)
T cd03265 137 RRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE-GT 215 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe-CC
Confidence 99999999999999999999999999999999999988764 57999999999999999999999999999743 55
Q ss_pred h
Q 048654 402 F 402 (723)
Q Consensus 402 ~ 402 (723)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=343.74 Aligned_cols=216 Identities=23% Similarity=0.314 Sum_probs=168.2
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++||+++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.++.+......
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~------ 74 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQ------ 74 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHH------
Confidence 46999999999999999999999999999999999999999999999999865 4567777777665322110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
.+.++++.+.... .....+.+++..... ...........++.++++.+||.+ ..++++.+|||
T Consensus 75 ---------~r~ig~v~Q~~~l------fp~~tv~eNi~~~~~-~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSg 137 (353)
T TIGR03265 75 ---------KRDYGIVFQSYAL------FPNLTVADNIAYGLK-NRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSG 137 (353)
T ss_pred ---------HCCEEEEeCCccc------CCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCH
Confidence 1122222221100 112233444433221 112233455678999999999974 56899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
||||||+|||||+.+|++|||||||++||+..+.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .
T Consensus 138 Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~-~ 216 (353)
T TIGR03265 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ-V 216 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-E
Confidence 9999999999999999999999999999999999998888754 6799999999999999999999999999975 4
Q ss_pred CChhhH
Q 048654 400 GNFDDF 405 (723)
Q Consensus 400 g~~~~~ 405 (723)
|+.+++
T Consensus 217 g~~~~~ 222 (353)
T TIGR03265 217 GTPQEI 222 (353)
T ss_pred cCHHHH
Confidence 776554
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=345.06 Aligned_cols=207 Identities=30% Similarity=0.410 Sum_probs=169.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++|+++.|++. .+|+|+||+|.+||+++|+|||||||||||++|+|+++|++|+|++++. ..++|+
T Consensus 2 ~L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 48899999999753 5899999999999999999999999999999999999999999998763 258999
Q ss_pred cccc--ccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 566 SQHF--VDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 566 ~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++ +..+++.++... .........+.. ..+.+.++|+.++|.... ++++.+|||||||||+|||||+.+|+|
T Consensus 80 ~Q~~~l~p~~tv~eni~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAF-GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-DRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred ecCcccCCCCcHHHHHHh-hhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9974 233445444321 111110000111 235678899999997654 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D-----ri~vl~~G~i~~-~g~~~~i~~ 226 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD-----RVVVMSQGNIEQ-AGTPDQVWR 226 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999999998775 3589999999999999995 999999999975 588877643
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=339.58 Aligned_cols=225 Identities=23% Similarity=0.317 Sum_probs=168.2
Q ss_pred cceEEEeEEEEeCC----------eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecC
Q 048654 164 KDITIDNFSVAARG----------KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVG 233 (723)
Q Consensus 164 ~~I~l~nls~~y~~----------~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~ 233 (723)
.+|+++||++.|+. ..+|+||||+|.+|+++||+|+||||||||+++|+|+..+ ..|+|.+.+.++..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~~ 81 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLK 81 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcCc
Confidence 46999999999962 5799999999999999999999999999999999998754 46777777766543
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccc
Q 048654 234 DDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM 313 (723)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~ 313 (723)
..... ...++..++++.+.... .......+.+.+.+.......+.......++.++|+.+||....
T Consensus 82 ~~~~~----------~~~~r~~i~~v~Q~~~~----~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 147 (327)
T PRK11308 82 ADPEA----------QKLLRQKIQIVFQNPYG----SLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH 147 (327)
T ss_pred CCHHH----------HHHHhCCEEEEEcCchh----hcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH
Confidence 32211 11122333443321100 00011122232222211111123344567899999999996445
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
.++++.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++
T Consensus 148 ~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~v 227 (327)
T PRK11308 148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMV 227 (327)
T ss_pred hcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 68999999999999999999999999999999999999999999999988754 67999999999999999999999
Q ss_pred EeCCEEEEecCChhhH
Q 048654 390 LHDQKLHFYRGNFDDF 405 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~ 405 (723)
|++|+|+.+ |+.+++
T Consensus 228 m~~G~ive~-g~~~~~ 242 (327)
T PRK11308 228 MYLGRCVEK-GTKEQI 242 (327)
T ss_pred EECCEEEEE-CCHHHH
Confidence 999999754 776554
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=325.89 Aligned_cols=206 Identities=33% Similarity=0.442 Sum_probs=164.8
Q ss_pred eEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
||+++|+++.|+++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 578999999997531 15899999999999999999999999999999999999999999987653
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..++|++|... ..+++.++... ...... .........+.++++.+++.... ++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~-~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVAL-PLEIAG-VPKAEIEERVLELLELVGLEDKA-DAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHH-HHHHcC-CCHHHHHHHHHHHHHHCCChhhh-hcChhhCCHHHHHHHHHHHHHhc
Confidence 24789998742 22333333211 111111 10001234578899999997544 46679999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++. .|+.+++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~ 228 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICD-----RVAVMEKGEVVE-EGTVEEV 228 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999999999876 3589999999999999995 999999999974 5776665
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=325.93 Aligned_cols=216 Identities=29% Similarity=0.389 Sum_probs=158.3
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeeecCCChHHHHHH
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
|+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..+ .|..|+|.+.+..+.....
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~------ 74 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV------ 74 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch------
Confidence 5789999999989999999999999999999999999999999999998611 3456777776655422110
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhCCCCccccCCC--CC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS-DAAEAQASKILAGLGFTKEMQGRP--TK 319 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~~~~~~~--~~ 319 (723)
+...++..++++.+.... . ...+.+++..... ...... .....++.++++.+|+.... ++. +.
T Consensus 75 -----~~~~~~~~i~~~~q~~~~------~-~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~ 140 (227)
T cd03260 75 -----DVLELRRRVGMVFQKPNP------F-PGSIYDNVAYGLR-LHGIKLKEELDERVEEALRKAALWDEV-KDRLHAL 140 (227)
T ss_pred -----HHHHHHhhEEEEecCchh------c-cccHHHHHHhHHH-hcCCCcHHHHHHHHHHHHHHcCCChHH-hccCCcc
Confidence 001112223333221100 0 1122222221111 111111 22456788999999997543 445 59
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~--~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++. .|||+||||++++..+||+|++|++|+++.
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE 220 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999998763 699999999999999999999999999974
Q ss_pred ecCCh
Q 048654 398 YRGNF 402 (723)
Q Consensus 398 ~~g~~ 402 (723)
+ |+.
T Consensus 221 ~-g~~ 224 (227)
T cd03260 221 F-GPT 224 (227)
T ss_pred e-cCc
Confidence 3 543
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=326.91 Aligned_cols=204 Identities=27% Similarity=0.432 Sum_probs=163.7
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------eeEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LRIG 563 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ig 563 (723)
|+++||++.|+++ .+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4689999999753 5899999999999999999999999999999999999999999987653 2488
Q ss_pred EEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 564 RYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 564 ~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
|++|... ..+++.++.... ...... ........+..+++.+++.... ++++.+|||||||||+|||||+.+|+||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~-~~~~~~-~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~ll 155 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAV-LEIRGL-SKKEREEKLEELLEEFHITHLR-KSKASSLSGGERRRVEIARALATNPKFL 155 (232)
T ss_pred EecCCccccccCcHHHHHHHH-HHhcCC-CHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9998642 222333332111 111110 0001234567899999997544 4677999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||||+|||+.+++.+.++|+++ +.|||+||||++++..+|| +|++|++|+++ ..|+.+++.
T Consensus 156 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~G~i~-~~~~~~~~~ 221 (232)
T cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD-----RAYIIYEGKVL-AEGTPEEIA 221 (232)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEECCeEE-EEeCHHHhh
Confidence 999999999999999999999876 3589999999999999995 99999999997 457777654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=339.07 Aligned_cols=226 Identities=19% Similarity=0.330 Sum_probs=170.1
Q ss_pred ccceEEEeEEEEeCC-------------eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeee
Q 048654 163 VKDITIDNFSVAARG-------------KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ 229 (723)
Q Consensus 163 ~~~I~l~nls~~y~~-------------~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q 229 (723)
.++|+++||++.|+. ..+|+||||+|.+||++||+|+||||||||+++|+|+..| ..|+|.+.+.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~ 83 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGK 83 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCE
Confidence 357999999999962 5799999999999999999999999999999999998754 5677888777
Q ss_pred eecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHH-hcCchHHHHHHHHHHHhCC
Q 048654 230 EVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQ-ILGSDAAEAQASKILAGLG 308 (723)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~L~~lg 308 (723)
++....... ...++..++++.+.... .......+.+++.+...... .+...+...++.++|+.+|
T Consensus 84 ~i~~~~~~~----------~~~~r~~i~~v~Q~~~~----~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vg 149 (331)
T PRK15079 84 DLLGMKDDE----------WRAVRSDIQMIFQDPLA----SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVG 149 (331)
T ss_pred ECCcCCHHH----------HHHHhCceEEEecCchh----hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC
Confidence 654332211 11122334443322100 00111233444433221111 1233455678889999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhC
Q 048654 309 FTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 309 l~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~ia 384 (723)
+.....++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+|
T Consensus 150 l~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~ 229 (331)
T PRK15079 150 LLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHIS 229 (331)
T ss_pred CChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 9655568999999999999999999999999999999999999999999999988754 679999999999999999
Q ss_pred CEEEEEeCCEEEEecCChhhH
Q 048654 385 TEIIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 385 d~Ii~L~~G~i~~~~g~~~~~ 405 (723)
|+|++|++|+++. .|+.+++
T Consensus 230 dri~vl~~G~ive-~g~~~~i 249 (331)
T PRK15079 230 DRVLVMYLGHAVE-LGTYDEV 249 (331)
T ss_pred CEEEEEECCEEEE-EcCHHHH
Confidence 9999999999975 4776554
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=329.00 Aligned_cols=208 Identities=27% Similarity=0.366 Sum_probs=165.1
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-------------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL------------- 560 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~------------- 560 (723)
++|+++||++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 2 PLLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred ceEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 589999999999753 48999999999999999999999999999999999999999999886521
Q ss_pred -------eEEEEcccccccc----CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHH
Q 048654 561 -------RIGRYSQHFVDLL----TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 561 -------~ig~~~q~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~ 629 (723)
.++|++|.....+ ++.++.............. .....+.++++.+++......+++..|||||||||+
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG-NIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchH-HHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence 3788888742111 1122221111111100000 123567889999999643344678999999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCC
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~ 705 (723)
|||||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++. .|+
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d-----~~~~l~~G~i~~-~~~ 232 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQ-----RLLVMQQGRVVE-SGL 232 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC-----EEEEEECCEEEE-ECC
Confidence 999999999999999999999999999999988765 4689999999999999995 999999999974 577
Q ss_pred HHHHH
Q 048654 706 FEEYK 710 (723)
Q Consensus 706 ~~~~~ 710 (723)
++++.
T Consensus 233 ~~~~~ 237 (253)
T TIGR02323 233 TDQVL 237 (253)
T ss_pred HHHHh
Confidence 76664
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=324.14 Aligned_cols=194 Identities=31% Similarity=0.425 Sum_probs=155.5
Q ss_pred EEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------eeEEEEcccccc
Q 048654 498 LIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------LRIGRYSQHFVD 571 (723)
Q Consensus 498 ~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------~~ig~~~q~~~~ 571 (723)
++||++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|+...
T Consensus 2 ~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 2 VEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred cccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 6799999975 35899999999999999999999999999999999999999999998873 358999997532
Q ss_pred ccCccccHHHHHHhhCCCC------CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEecc
Q 048654 572 LLTMEETPVSYLLRLHPDQ------EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645 (723)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDE 645 (723)
......+..+.+....... ......+.+..+++.+++.... ++++.+|||||||||+|||||+.+|+||||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-DRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1111123233221111100 0001234678899999997543 46779999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 646 PTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
||+|||+.++..+.++|.++. .|||+||||++++..+|| +|++|++|.+
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d-----~i~~l~~~~~ 210 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFD-----RVLLLNRTVV 210 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC-----EEEEEcCcEe
Confidence 999999999999999998863 689999999999999995 9999988743
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=341.77 Aligned_cols=220 Identities=24% Similarity=0.367 Sum_probs=166.7
Q ss_pred ceEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAAR----GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~----~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+..| ..|+|.+.+.++.......
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~~~~~~~-- 76 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLTALSEKE-- 76 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHH--
Confidence 488999999997 46899999999999999999999999999999999998654 5677777776654322111
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
...++..++++.+.... .....+.+++.... ............++.++++.+|+.. ..++++.+
T Consensus 77 --------~~~~~~~ig~v~q~~~l------~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~ 140 (343)
T PRK11153 77 --------LRKARRQIGMIFQHFNL------LSSRTVFDNVALPL-ELAGTPKAEIKARVTELLELVGLSD-KADRYPAQ 140 (343)
T ss_pred --------HHHHhcCEEEEeCCCcc------CCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhh
Confidence 11122333433322111 01122333332221 1112223344567889999999974 45789999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++
T Consensus 141 LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV 220 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999865 579999999999999999999999999997
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+.+++
T Consensus 221 ~-~g~~~~~ 228 (343)
T PRK11153 221 E-QGTVSEV 228 (343)
T ss_pred E-EcCHHHH
Confidence 4 5666554
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=328.65 Aligned_cols=202 Identities=36% Similarity=0.549 Sum_probs=165.7
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccccccc
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLL 573 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~ 573 (723)
++|+++||++.|+++ .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++++..++|++|.+....
T Consensus 3 ~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 3 SLVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred cEEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 589999999999753 589999999999999999999999999999999999999999999988778999999742211
Q ss_pred CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHH
Q 048654 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653 (723)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~ 653 (723)
.+..+...+ ....+. . ..+.+..+++.+|+.... ++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 81 ~l~~~~~~~-~~~~~~---~-~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 154 (251)
T PRK09544 81 TLPLTVNRF-LRLRPG---T-KKEDILPALKRVQAGHLI-DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVN 154 (251)
T ss_pred ccChhHHHH-Hhcccc---c-cHHHHHHHHHHcCChHHH-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 111122222 111111 1 234578899999997544 4677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 654 SIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 654 s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
++..+.++|.++ +.|||+||||++++..+|| +|++|++ +|+ ..|+++++.
T Consensus 155 ~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d-----~i~~l~~-~i~-~~g~~~~~~ 208 (251)
T PRK09544 155 GQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTD-----EVLCLNH-HIC-CSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEECC-ceE-eeCCHHHHh
Confidence 999999999765 4689999999999999995 9999965 676 457777654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=334.29 Aligned_cols=209 Identities=29% Similarity=0.384 Sum_probs=165.1
Q ss_pred eEEEEEEEEEcCCCc---ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 495 LLQLIEVSFSYPNRE---DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~---~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
.|+++||++.|++.. .++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997521 25899999999999999999999999999999999999999999988653
Q ss_pred ---eeEEEEccccc-cc--cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFV-DL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 ---~~ig~~~q~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..++|++|... .. .++.++.. +....+. .........+..+++.+||......+++.+|||||||||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVA-FGPQNFG-VSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 24789998742 11 22322221 1111111 00001223467889999997433356789999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|| ++++|++|+++. .|+++++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~ 233 (280)
T PRK13649 160 LAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYAD-----FVYVLEKGKLVL-SGKPKDIF 233 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999999999876 3699999999999999995 999999999974 57777654
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
.
T Consensus 234 ~ 234 (280)
T PRK13649 234 Q 234 (280)
T ss_pred c
Confidence 3
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=328.21 Aligned_cols=231 Identities=26% Similarity=0.364 Sum_probs=167.1
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH-
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV- 243 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~- 243 (723)
.|+++||++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+..| ..|+|.+.+..+...... ...+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~-~~~~~~ 81 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTINLVRDK-DGQLKV 81 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccccccc-cccccc
Confidence 48999999999999999999999999999999999999999999999998654 456776666544210000 00000
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
....+...++..++++.+.... .....+.+++......+..........++.++++.+|+.....++++.+|||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l------~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNL------WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred ccchHHHHHhhceEEEecCccc------CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 0000111223334444332111 0111223333221111111223345677889999999975434688999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~ 234 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEG 234 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeC
Confidence 9999999999999999999999999999999999999998765 679999999999999999999999999997 457
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 235 ~~~~~ 239 (257)
T PRK10619 235 APEQL 239 (257)
T ss_pred CHHHh
Confidence 76655
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=335.61 Aligned_cols=216 Identities=21% Similarity=0.365 Sum_probs=167.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++|++++|+++.+|+|+||+|++|+++||+|||||||||||++|+|+..| ..|+|.+.+..+... ..
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~~~-~~------- 71 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVLQN-PK------- 71 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccC-hH-------
Confidence 48999999999999999999999999999999999999999999999998654 556777666554321 11
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.+++.++++.+.... .....+.+++.. ...+..........++.++++.+|+.+ ..++++..||||
T Consensus 72 ------~~~~~ig~~~q~~~l------~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G 137 (301)
T TIGR03522 72 ------EVQRNIGYLPEHNPL------YLDMYVREYLQF-IAGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKG 137 (301)
T ss_pred ------HHHhceEEecCCCCC------CCCCcHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHH
Confidence 122333433322111 111123333322 122222223444667899999999975 457999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCCh
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNF 402 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~ 402 (723)
|||||+|||||+.+|++|||||||+|||+.++.+++++|+++ +.|||++||+++++.++||||++|++|+++ +.|+.
T Consensus 138 ~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~ 216 (301)
T TIGR03522 138 YRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKL 216 (301)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCH
Confidence 999999999999999999999999999999999999999877 579999999999999999999999999997 56777
Q ss_pred hhH
Q 048654 403 DDF 405 (723)
Q Consensus 403 ~~~ 405 (723)
+++
T Consensus 217 ~~~ 219 (301)
T TIGR03522 217 DEL 219 (301)
T ss_pred HHH
Confidence 654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=321.96 Aligned_cols=195 Identities=33% Similarity=0.495 Sum_probs=157.0
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------e
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------L 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------~ 560 (723)
||+++|+++.|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 57899999999522 35899999999999999999999999999999999999999999987652 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.++|++|... ..+++.++.... ..... .........+.++++.+++.... ++++.+|||||||||+|||||+.+|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p 156 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALP-LEVRG-KKEREIQRRVGAALRQVGLEHKA-DAFPEQLSGGEQQRVAIARAIVNSP 156 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHH-HHHcC-CCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhCCC
Confidence 4789998642 123333332111 11111 10001234678899999997544 4667899999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ++++|++|+
T Consensus 157 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d-----~i~~l~~G~ 214 (214)
T TIGR02673 157 PLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAH-----RVIILDDGR 214 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC-----EEEEecCCC
Confidence 999999999999999999999999876 4689999999999999995 999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=340.61 Aligned_cols=209 Identities=22% Similarity=0.316 Sum_probs=166.0
Q ss_pred eEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC----CCcceEEECCce--------
Q 048654 495 LLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS----PTEGEVRRSQKL-------- 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~----p~~G~I~~~~~~-------- 560 (723)
+|+++||++.|+... ..+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 689999999997532 358999999999999999999999999999999999998 489999987631
Q ss_pred -------eEEEEcccccc----ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC--CCcCCCCCCCHHHHHH
Q 048654 561 -------RIGRYSQHFVD----LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH--NHLTPIAKLSGGQKAR 627 (723)
Q Consensus 561 -------~ig~~~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~--~~~~~i~~LSGGqkqR 627 (723)
.++|++|+... .+++.++....+ ..+.........+.+.++|+.+||... ..++.+.+|||||+||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l-~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAI-KVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 48999997532 222222222221 111111111124567889999999642 2235668999999999
Q ss_pred HHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecC
Q 048654 628 VVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703 (723)
Q Consensus 628 v~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~ 703 (723)
|+|||||+.+|+||||||||++||+.++..++++|+++ +.|||+||||+.++..+|| ||++|++|+|++ .
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~ad-----ri~vm~~G~ive-~ 235 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAH-----KIIVMYAGQVVE-T 235 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-E
Confidence 99999999999999999999999999999999999876 3589999999999999995 999999999986 4
Q ss_pred CCHHHHH
Q 048654 704 GTFEEYK 710 (723)
Q Consensus 704 g~~~~~~ 710 (723)
|+.+++.
T Consensus 236 g~~~~~~ 242 (326)
T PRK11022 236 GKAHDIF 242 (326)
T ss_pred CCHHHHh
Confidence 7776654
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=325.23 Aligned_cols=206 Identities=29% Similarity=0.399 Sum_probs=164.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIGR 564 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig~ 564 (723)
+|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 5789999999975 35899999999999999999999999999999999999999999988763 24789
Q ss_pred Eccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 565 YSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 565 ~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
++|... ...++.++... ..... ..........+.++++.+||.... ++++.+|||||||||+|||||+.+|+|||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~-~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~laral~~~p~lll 155 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRY-HAALH-GLSRAEARERIAALLARLGLAERA-DDKVRELNGGHRRRVEIARALLHRPALLL 155 (236)
T ss_pred eCCCCCCcccCcHHHHHHH-HHHhc-CCCHHHHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998742 12233332211 11111 110001234577899999997544 46679999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
|||||+|||+.++..+.++|.++ +.|||+||||++++.. | |++++|++|+++. .|+++++...
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~-----d~i~~l~~G~i~~-~~~~~~~~~~ 222 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-D-----DRLVVLHRGRVLA-DGAAAELRGA 222 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-C-----CEEEEEeCCeEEE-eCCHHHHHHH
Confidence 99999999999999999999876 3589999999999974 8 4999999999974 5788776554
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=320.43 Aligned_cols=196 Identities=26% Similarity=0.445 Sum_probs=159.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------eeEEEEccc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------LRIGRYSQH 568 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------~~ig~~~q~ 568 (723)
|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|.
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccC
Confidence 468999999975 35899999999999999999999999999999999999999999998763 358999987
Q ss_pred cc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC
Q 048654 569 FV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646 (723)
Q Consensus 569 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP 646 (723)
.. ..+++.++... ....+. .......+.+.++++.+|+.... ++++.+|||||||||+||+||+.+|++||||||
T Consensus 79 ~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 79 RGLYPKMKVIDQLVY-LAQLKG-LKKEEARRRIDEWLERLELSEYA-NKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred CcCCcCCcHHHHHHH-HHHHcC-CChHHHHHHHHHHHHHcCChHHH-hCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 42 22333333221 111111 10011234578899999997544 456799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 647 TNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 647 T~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|+|||+.++..+.+.|+++ +.|||+||||.+++..+|| ++++|++|+++.
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~g~i~~ 208 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCD-----RVLLLNKGRAVL 208 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhh-----EEEEEeCCEEEe
Confidence 9999999999999999876 3689999999999999995 999999999964
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=326.83 Aligned_cols=207 Identities=27% Similarity=0.396 Sum_probs=165.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------ee
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------LR 561 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------~~ 561 (723)
+|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|++++. ..
T Consensus 1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 5789999999975 35899999999999999999999999999999999999999999987652 14
Q ss_pred EEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
++|++|... ..+++.++......... ..........+.++++.+|+.... ++++.+|||||||||+|||||+.+|+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVR-GASKEEAEKQARELLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhc-CCCHHHHHHHHHHHHHHcCChHHH-hcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 789998642 12233333211100011 100001234577899999997544 46679999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++. .|+++++.+
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~~ 225 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVAS-----RLIFIDKGRIAE-DGDPQVLIK 225 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEe-eCCHHHHhc
Confidence 99999999999999999999999876 3689999999999999995 999999999974 578777643
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=322.18 Aligned_cols=197 Identities=30% Similarity=0.405 Sum_probs=157.1
Q ss_pred eEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+|+++||++.|++.. ..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 478999999997421 35899999999999999999999999999999999999999999988652
Q ss_pred --eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 560 --LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 560 --~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
..++|++|... ..+++.++.... .... ..........+.++++.+|+.... ++++.+|||||||||+|||+|+
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~-~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMP-LLIG-KKSVKEAKERAYEMLEKVGLEHRI-NHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHH-HHhc-CCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHh
Confidence 24899998742 223333332111 1111 110011234577899999997544 4677999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++.. || +|++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d-----~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LD-----RVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cC-----EEEEEeCCEec
Confidence 999999999999999999999999999865 4689999999999864 64 99999999984
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=346.70 Aligned_cols=219 Identities=30% Similarity=0.413 Sum_probs=166.8
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++||+++|+++++|+|+||+|++|++++|+||||||||||||+|+|+..| .+|.|.+.+..+.......
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i~~~~~~~----- 74 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDVEALSARA----- 74 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEcCcCCHHH-----
Confidence 369999999999999999999999999999999999999999999999998654 5667777776654322111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHH-HHHHhcC--chHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY-EKLQILG--SDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+++.++++.+.... .....+.+.+.... .....+. ......++.++|+.+|+. ...++++.+
T Consensus 75 --------~~~~ig~v~q~~~l------~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~ 139 (402)
T PRK09536 75 --------ASRRVASVPQDTSL------SFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTS 139 (402)
T ss_pred --------HhcceEEEccCCCC------CCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhh
Confidence 12223333221111 00112222221110 0000111 234467889999999997 456899999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
|||||||||+|||||+++|+||||||||++||+.++..++++|+++ +.|||++|||++++..+||+|++|++|+++.
T Consensus 140 LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999988865 5799999999999999999999999999974
Q ss_pred ecCChhhH
Q 048654 398 YRGNFDDF 405 (723)
Q Consensus 398 ~~g~~~~~ 405 (723)
.|+++++
T Consensus 220 -~G~~~ev 226 (402)
T PRK09536 220 -AGPPADV 226 (402)
T ss_pred -ecCHHHH
Confidence 5777665
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=325.11 Aligned_cols=207 Identities=26% Similarity=0.352 Sum_probs=163.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------eeEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LRIG 563 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ig 563 (723)
|+++||++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4689999999753 5899999999999999999999999999999999999999999988652 2488
Q ss_pred EEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCC-CCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 564 RYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-LPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 564 ~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g-l~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
|++|... ..+++.++.. +..... +....+.+..+++.++ +... .++++.+|||||||||+|||||+.+|++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~-~~~~~~----~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~~p~i 152 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLL-TGLAAL----PRRSRKIPDEIYELFPVLKEM-LGRRGGDLSGGQQQQLAIARALVTRPKL 152 (230)
T ss_pred EeccCCcccCCCcHHHHHH-HHHHhc----CcchHHHHHHHHHHHHhHHHH-hhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9998742 2223322221 111111 1112334566777776 4433 3467899999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQRE 716 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~~~~~ 716 (723)
|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+.+++....+..
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d-----~v~~l~~g~i~~-~~~~~~~~~~~~~~ 226 (230)
T TIGR03410 153 LLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELAD-----RYYVMERGRVVA-SGAGDELDEDKVRR 226 (230)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHcChHHHHH
Confidence 9999999999999999999999875 3689999999999999995 999999999974 58888775544433
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=332.67 Aligned_cols=211 Identities=27% Similarity=0.393 Sum_probs=167.4
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------e
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------L 560 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~ 560 (723)
.+++|+++||++.|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 8 ~~~~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 8 SDTTFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CCceEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 45789999999999753 5899999999999999999999999999999999999999999998763 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCC--CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQ--EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
.++|++|... ..+++.++............ ........+..+++.+++.... ++++.+|||||||||+|||||+.
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA-HRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-cCCcccCCHHHHHHHHHHHHHhc
Confidence 4889998642 22223222111000000000 0001234578899999997543 45678999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++.++|| +|++|++|+|+. .|+++++..
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d-----~i~~l~~G~i~~-~~~~~~~~~ 237 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCD-----YLVALRGGEMIA-QGTPAELMR 237 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCeEEE-ecCHHHhcC
Confidence 99999999999999999999999999876 4689999999999999995 999999999974 577777643
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=323.46 Aligned_cols=220 Identities=25% Similarity=0.313 Sum_probs=165.2
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+.. |..|+|.+.+..+......
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~------- 71 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVD------- 71 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChh-------
Confidence 3789999999998899999999999999999999999999999999999865 4566777766554321110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++..++++.+.... .....+.+++.................++.++++.+|+.. ..++++.+||||
T Consensus 72 ----~~~~~~~i~~~~q~~~~------~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G 140 (240)
T PRK09493 72 ----ERLIRQEAGMVFQQFYL------FPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-RAHHYPSELSGG 140 (240)
T ss_pred ----HHHHhhceEEEeccccc------CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-HHhcChhhcCHH
Confidence 01112233333221111 0011222333211111111223344567889999999974 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|+++ +.|+
T Consensus 141 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~ 219 (240)
T PRK09493 141 QQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGD 219 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCC
Confidence 999999999999999999999999999999999999999765 579999999999999999999999999997 4577
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
++++
T Consensus 220 ~~~~ 223 (240)
T PRK09493 220 PQVL 223 (240)
T ss_pred HHHH
Confidence 6655
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=322.65 Aligned_cols=194 Identities=38% Similarity=0.483 Sum_probs=154.8
Q ss_pred EEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEEE
Q 048654 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGRY 565 (723)
Q Consensus 497 ~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~~ 565 (723)
+++|+++.|++....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999752235899999999999999999999999999999999999999999988763 247899
Q ss_pred ccccc---cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 566 SQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 566 ~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
+|... ...++.++.... ..... .........+.++++.++|.... ++++.+|||||||||+|||||+.+|++||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~laral~~~p~lll 157 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFG-LENLG-LPEEEIEERVEEALELVGLEGLR-DRSPFTLSGGQKQRVAIAGVLAMDPDILL 157 (211)
T ss_pred ecChhhhcCCCcHHHHHHHH-HHHcC-CCHHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98742 122333322111 11110 00001234577899999997544 46779999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 643 LDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
|||||+|||+.++..+.+.|.++. .|||+||||++++..+|| +|++|++|+
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d-----~i~~l~~G~ 211 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELAD-----RVIVLEDGK 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEeCCC
Confidence 999999999999999999998873 589999999999999995 999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=342.71 Aligned_cols=218 Identities=23% Similarity=0.315 Sum_probs=167.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++||+++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|+..|....|+|.+.+..+......
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~------- 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH------- 77 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH-------
Confidence 4899999999999999999999999999999999999999999999999875543117777777665322110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++++.+.... .....+.+++...+. ...........++.++++.+||.+ ..++++.+||||
T Consensus 78 --------~r~ig~vfQ~~~l------~p~~tv~enl~~~l~-~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSgG 141 (362)
T TIGR03258 78 --------KRGLALLFQNYAL------FPHLKVEDNVAFGLR-AQKMPKADIAERVADALKLVGLGD-AAAHLPAQLSGG 141 (362)
T ss_pred --------HCCEEEEECCccc------CCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCc-hhhCChhhCCHH
Confidence 1112222211100 112233444433221 112233455678999999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW-----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~-----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
|||||+|||||+.+|+||||||||++||+..+.+|.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~ 220 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-H 220 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-E
Confidence 999999999999999999999999999999999999888643 5799999999999999999999999999975 4
Q ss_pred CChhhHH
Q 048654 400 GNFDDFE 406 (723)
Q Consensus 400 g~~~~~~ 406 (723)
|+++++.
T Consensus 221 g~~~~~~ 227 (362)
T TIGR03258 221 GEPQALY 227 (362)
T ss_pred cCHHHHH
Confidence 7776653
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=319.95 Aligned_cols=192 Identities=28% Similarity=0.412 Sum_probs=158.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEec
Confidence 468999999975 35899999999999999999999999999999999999999999998764 2488999
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|... ...++.++.... ...+ . . ....+..+++.+++.... ++++.+|||||||||+|||||+.+|++||||
T Consensus 79 q~~~~~~~~tv~e~l~~~-~~~~-~---~-~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~llllD 151 (208)
T cd03268 79 EAPGFYPNLTARENLRLL-ARLL-G---I-RKKRIDEVLDVVGLKDSA-KKKVKGFSLGMKQRLGIALALLGNPDLLILD 151 (208)
T ss_pred CCCccCccCcHHHHHHHH-HHhc-C---C-cHHHHHHHHHHcCCHHHH-hhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 8642 223333332111 1111 1 1 235678899999997544 4667999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 645 EPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|||++||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++.
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d-----~v~~l~~g~i~~ 206 (208)
T cd03268 152 EPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVAD-----RIGIINKGKLIE 206 (208)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC-----EEEEEECCEEEe
Confidence 999999999999999999876 3689999999999999995 999999999864
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=325.40 Aligned_cols=226 Identities=23% Similarity=0.354 Sum_probs=165.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|.|.+.+..+.........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~---- 76 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITIDTARSLSQQ---- 76 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccccccch----
Confidence 59999999999988999999999999999999999999999999999998654 556777766654321100000
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
......++..++++.+.... .....+.+++.................++.++++.+|+.. ..++++.+||||
T Consensus 77 -~~~~~~~~~~i~~v~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G 148 (250)
T PRK11264 77 -KGLIRQLRQHVGFVFQNFNL------FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-KETSYPRRLSGG 148 (250)
T ss_pred -hhHHHHhhhhEEEEecCccc------CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-hhhCChhhCChH
Confidence 00001122233333221111 0011223333221111111222334567889999999974 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV-EQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCC
Confidence 999999999999999999999999999999999999988764 579999999999999999999999999996 4577
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+++
T Consensus 228 ~~~~ 231 (250)
T PRK11264 228 AKAL 231 (250)
T ss_pred HHHH
Confidence 6654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=328.74 Aligned_cols=197 Identities=28% Similarity=0.398 Sum_probs=159.6
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------eeEEEEccc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------LRIGRYSQH 568 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------~~ig~~~q~ 568 (723)
||+++|+++.|++ ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|.
T Consensus 1 ml~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 5889999999975 35899999999999999999999999999999999999999999998763 247999987
Q ss_pred cc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC
Q 048654 569 FV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646 (723)
Q Consensus 569 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP 646 (723)
.. ...++.++... ...... .........+.++++.+||.... ++++.+|||||||||+|||||+.+|+|||||||
T Consensus 79 ~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 79 EGLLPWRNVQDNVAF-GLQLAG-VEKMQRLEIAHQMLKKVGLEGAE-KRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred CccCCCCcHHHHHHh-HHHHcC-CCHHHHHHHHHHHHHHcCChhHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 42 22233333211 111111 00001234578899999997544 466799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEE--CCeEEe
Q 048654 647 TNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVE--NGTVSR 701 (723)
Q Consensus 647 T~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~--~G~i~~ 701 (723)
|+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|+ +|+|+.
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d-----~i~~l~~~~G~i~~ 211 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMAT-----ELVLLSPGPGRVVE 211 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEeCCCcEEEE
Confidence 9999999999999999886 3689999999999999995 999998 599874
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=319.65 Aligned_cols=210 Identities=28% Similarity=0.351 Sum_probs=156.6
Q ss_pred ceEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAA-RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y-~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++|+++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+.++........
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~---- 74 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQL---- 74 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHH----
Confidence 37899999999 467899999999999999999999999999999999998654 45677776665532211100
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
..++..++++.+.... .....+.+++..... ...........++.++++.+|+.. ..++++.+|||
T Consensus 75 ------~~~~~~i~~~~q~~~~------~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~ 140 (214)
T TIGR02673 75 ------PLLRRRIGVVFQDFRL------LPDRTVYENVALPLE-VRGKKEREIQRRVGAALRQVGLEH-KADAFPEQLSG 140 (214)
T ss_pred ------HHHHhheEEEecChhh------ccCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCH
Confidence 0112223332221100 001122222221111 111222334567889999999974 45788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+|||+++++..+||+|++|++|+
T Consensus 141 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 141 GEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999999864 6799999999999999999999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=344.59 Aligned_cols=208 Identities=28% Similarity=0.397 Sum_probs=170.2
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEE
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIG 563 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig 563 (723)
.++|+++|+++.|++ ..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|++++. ..+|
T Consensus 17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred CceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 568999999999975 35899999999999999999999999999999999999999999998764 2589
Q ss_pred EEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 564 RYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 564 ~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
|++|++ +..+++.+|.. +.+.... .......+++.++++.++|.+... +.+.+|||||||||+|||||+.+|+||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~-~~l~~~~-~~~~~~~~~v~~~l~~l~L~~~~~-~~~~~LSgGq~QRVaLARAL~~~P~lL 171 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIA-FGLKQDK-LPKAEIASRVNEMLGLVHMQEFAK-RKPHQLSGGQRQRVALARSLAKRPKLL 171 (377)
T ss_pred EEeCCCccCCCCCHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999974 34455655532 2221111 000112356788999999986544 667999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHH----cCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDE----FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~----~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||||++||+.++..+.+.|.+ ++.|+|+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laD-----ri~vl~~G~i~~-~g~~~~~~~ 239 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG-----RIAIMNRGKFVQ-IGEPEEIYE 239 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC-----EEEEEeCCEEEE-EcCHHHHHh
Confidence 99999999999999888766654 45799999999999999995 999999999985 588877654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=322.09 Aligned_cols=220 Identities=22% Similarity=0.335 Sum_probs=163.9
Q ss_pred ceEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARGK----ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~~----~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.++++.......
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~-- 76 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKE-- 76 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHH--
Confidence 37899999999876 899999999999999999999999999999999998765 4566777666553221110
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
...++..++++.+.... .....+.+++..... ............+.++++.+|+.. ..++++.+
T Consensus 77 --------~~~~~~~i~~~~q~~~~------~~~~t~~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 140 (233)
T cd03258 77 --------LRKARRRIGMIFQHFNL------LSSRTVFENVALPLE-IAGVPKAEIEERVLELLELVGLED-KADAYPAQ 140 (233)
T ss_pred --------HHHHHhheEEEccCccc------CCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCChh-hhhcChhh
Confidence 01112233333221111 011122333322111 111222334567889999999974 45789999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||||||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+|||+++++..+||++++|++|+++
T Consensus 141 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999998754 579999999999999999999999999997
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+.+++
T Consensus 221 ~-~~~~~~~ 228 (233)
T cd03258 221 E-EGTVEEV 228 (233)
T ss_pred E-ecCHHHH
Confidence 4 4665443
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=325.80 Aligned_cols=202 Identities=29% Similarity=0.397 Sum_probs=163.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
.|+++|+++.|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 58899999999753 5899999999999999999999999999999999999999999988763 2478
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
|++|...- + ..+....+. ......+ .....+.++++.+++......+++.+|||||||||+|||||+.+|+||||
T Consensus 81 ~~~q~~~~-~--~~tv~e~l~-~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 155 (241)
T PRK14250 81 MVFQQPHL-F--EGTVKDNIE-YGPMLKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLL 155 (241)
T ss_pred EEecCchh-c--hhhHHHHHh-cchhhcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99987421 1 112222221 1111111 12346778999999963333467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||||+|||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~ 219 (241)
T PRK14250 156 DEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGD-----YTAFLNKGILVE-YAKTYDF 219 (241)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCC-----EEEEEeCCEEEE-eCCHHHH
Confidence 9999999999999999999875 4699999999999999995 999999999975 4666554
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=326.95 Aligned_cols=225 Identities=22% Similarity=0.337 Sum_probs=173.9
Q ss_pred eEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHH
Q 048654 166 ITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 166 I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~ 238 (723)
|+++||+..|.. ..+++||||+|.+||++||||.||||||||.+.|+|+....+ ..|+|.|.++++...+...
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 789999999853 479999999999999999999999999999999999865222 2357888777765443321
Q ss_pred HHHHHHhhHHHHHHH-HHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCcc--c
Q 048654 239 IQAVVSAHEELVKLR-EEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTKE--M 313 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~~--~ 313 (723)
+. .++ ..++++ |+.... ..+...++..+.+.+...... ...+..+++.++|+.+||... .
T Consensus 82 ~~----------~iRG~~I~mIfQ~p~~s-----LnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~ 146 (316)
T COG0444 82 LR----------KIRGKEIAMIFQDPMTS-----LNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERR 146 (316)
T ss_pred HH----------hhcCceEEEEEcCchhh-----cCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 11 111 223333 222211 122345566666555432222 344567899999999999854 5
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
.+.++++|||||||||+||.||+.+|+|||.||||++||...+..+.++|+++ +.|+|+||||+..+.++||||+|
T Consensus 147 ~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~V 226 (316)
T COG0444 147 LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV 226 (316)
T ss_pred HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEE
Confidence 68999999999999999999999999999999999999999999998888754 67999999999999999999999
Q ss_pred EeCCEEEEecCChhhHH
Q 048654 390 LHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~~ 406 (723)
|..|+|++. |+.+++.
T Consensus 227 MYaG~iVE~-g~~~~i~ 242 (316)
T COG0444 227 MYAGRIVEE-GPVEEIF 242 (316)
T ss_pred EECcEEEEe-CCHHHHh
Confidence 999999865 7766553
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=323.83 Aligned_cols=221 Identities=28% Similarity=0.334 Sum_probs=165.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCC---cEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK---NIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~---~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|+++||+++|++..+|+|+||+|++|++++|+|+|||||||||++|+|+..|.|. .|+|.+.++.+......
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~---- 76 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID---- 76 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc----
Confidence 37899999999988999999999999999999999999999999999998765422 67887776654321000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHh-cCchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI-LGSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
...++..++++.+.... .. ..+.+++..... ... ........++.++++.+|+.. ...+++
T Consensus 77 -------~~~~~~~i~~v~q~~~~------~~-~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 141 (247)
T TIGR00972 77 -------VVELRRRVGMVFQKPNP------FP-MSIYDNIAYGPR-LHGIKDKKELDEIVEESLKKAALWDEVKDRLHDS 141 (247)
T ss_pred -------hHHHHhheEEEecCccc------CC-CCHHHHHHhHHH-hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCC
Confidence 01112233333322111 00 122232221111 111 122344567889999999962 334788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 142 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 142 ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221 (247)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 37999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+.+++
T Consensus 222 ~~-~~~~~~~ 230 (247)
T TIGR00972 222 VE-YGPTEQI 230 (247)
T ss_pred EE-eCCHHHH
Confidence 64 4666554
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=320.22 Aligned_cols=195 Identities=29% Similarity=0.404 Sum_probs=158.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIGRY 565 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig~~ 565 (723)
|+++|+++.|++. .+|+|+||+|.+| +++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEe
Confidence 4689999999753 5899999999999 99999999999999999999999999999998763 348899
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|+.. ..+++.++.... ..... .......+.+..+++.+||.... ++++.+|||||||||+|||||+.+|++|||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~llll 154 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYI-AWLKG-IPSKEVKARVDEVLELVNLGDRA-KKKIGSLSGGMRRRVGIAQALVGDPSILIV 154 (211)
T ss_pred cCCCcccccCCHHHHHHHH-HHHhC-CCHHHHHHHHHHHHHHCCCHHHH-hCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98742 222333332111 11111 10011234578899999997544 467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 644 DEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
||||+|||+.++..+.++|+++. .|||+||||++++..+|| ++++|++|+++.
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d-----~i~~l~~g~i~~ 209 (211)
T cd03264 155 DEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCN-----QVAVLNKGKLVF 209 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEEe
Confidence 99999999999999999999874 689999999999999985 999999999964
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=341.50 Aligned_cols=216 Identities=25% Similarity=0.342 Sum_probs=166.2
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++|++++|+++++|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|+|.+.++++......
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~------- 72 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVSRLHAR------- 72 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHH-------
Confidence 48999999999999999999999999999999999999999999999998654 566777777665422110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHH---HhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL---QILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
...++++.+.... .....+.+++....... .........+++.++|+.+|+.. ..++++.+|
T Consensus 73 --------~r~i~~v~Q~~~l------~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~L 137 (353)
T PRK10851 73 --------DRKVGFVFQHYAL------FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-LADRYPAQL 137 (353)
T ss_pred --------HCCEEEEecCccc------CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-hhhCChhhC
Confidence 1112222221100 11123333333221110 01123345678999999999974 568999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||||||+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++.
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~ 217 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ 217 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998888754 5799999999999999999999999999975
Q ss_pred ecCChhhH
Q 048654 398 YRGNFDDF 405 (723)
Q Consensus 398 ~~g~~~~~ 405 (723)
.|+++++
T Consensus 218 -~g~~~~i 224 (353)
T PRK10851 218 -AGTPDQV 224 (353)
T ss_pred -EcCHHHH
Confidence 4776655
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=321.38 Aligned_cols=198 Identities=29% Similarity=0.383 Sum_probs=158.5
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------e
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------L 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------~ 560 (723)
||+++|+++.|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 47899999999422 35899999999999999999999999999999999999999999987653 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.++|++|... ...++.++... ..... ..........+.++++.+++.... ++++.+|||||||||+|||||+.+|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p 156 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAI-PLIIA-GASGDDIRRRVSAALDKVGLLDKA-KNFPIQLSGGEQQRVGIARAVVNKP 156 (222)
T ss_pred heEEEecCccccccccHHHHHHh-HHHhc-CCCHHHHHHHHHHHHHHcCChhhh-hCCchhCCHHHHHHHHHHHHHHcCC
Confidence 4789998742 12233332211 11111 110001223567899999997544 4667999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~ 217 (222)
T PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSY-----RMLTLSDGHLHG 217 (222)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEcc
Confidence 999999999999999999999999876 3689999999999999985 999999999863
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=332.68 Aligned_cols=207 Identities=28% Similarity=0.409 Sum_probs=165.0
Q ss_pred CeEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
++|+++||++.|++. ...+|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 479999999999742 235899999999999999999999999999999999999999999988763 24
Q ss_pred EEEEccccc---cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 562 IGRYSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 562 ig~~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
++|++|.+. ...++.++.. +..... ........+.+.++++.+||.+.. ++++.+|||||||||+|||||+.+|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~-~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qrv~lAral~~~p 159 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVA-FGLENK-GIPHEEMKERVNEALELVGMQDFK-EREPARLSGGQKQRVAIAGAVAMRP 159 (279)
T ss_pred ceEEEcChHHhcccccHHHHHH-hhHHhC-CCCHHHHHHHHHHHHHHCCCHhHh-hCCcccCCHHHHHHHHHHHHHHcCC
Confidence 799999752 1223333321 111111 000001234578899999997544 4667999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+||||||||+|||+.++..+.++|+++ +.|||+||||++++. +|| +|++|++|+++. .|+++++.
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~d-----ri~~l~~G~i~~-~g~~~~~~ 228 (279)
T PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSD-----RVLVMKNGQVES-TSTPRELF 228 (279)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCC-----EEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999998875 459999999999994 784 999999999974 57877654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=329.41 Aligned_cols=216 Identities=25% Similarity=0.398 Sum_probs=168.5
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---cceEEECCc----------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT---EGEVRRSQK---------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~---~G~I~~~~~---------- 559 (723)
+++|+++||++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 2 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 2 QTIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79 (262)
T ss_pred CcEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch
Confidence 358999999999975 35899999999999999999999999999999999999986 499987663
Q ss_pred ------eeEEEEccccc--cccCccccHHHHHHhhCC------CCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHH
Q 048654 560 ------LRIGRYSQHFV--DLLTMEETPVSYLLRLHP------DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQK 625 (723)
Q Consensus 560 ------~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqk 625 (723)
..++|++|... ..+++.++.........+ ..........+.++++.+|+.... ++++.+||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~ 158 (262)
T PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-HQRVSTLSGGQQ 158 (262)
T ss_pred hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-hCCccccCHHHH
Confidence 13789998642 122332222110000000 000011234678899999997533 467799999999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d-----~i~~l~~g~i~- 232 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCE-----RIVALRQGHVF- 232 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEE-
Confidence 9999999999999999999999999999999999999876 3589999999999999995 99999999996
Q ss_pred cCCCHHHHHHHHHHHH
Q 048654 702 FPGTFEEYKEDLQREI 717 (723)
Q Consensus 702 ~~g~~~~~~~~~~~~~ 717 (723)
..|+++++.+....++
T Consensus 233 ~~g~~~~~~~~~~~~~ 248 (262)
T PRK09984 233 YDGSSQQFDNERFDHL 248 (262)
T ss_pred EeCCHHHhccHHHHHH
Confidence 5688888744333333
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=322.87 Aligned_cols=220 Identities=28% Similarity=0.357 Sum_probs=161.9
Q ss_pred eEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 166 ITIDNFSVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 166 I~l~nls~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
|+++||+++|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+.++.......
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~------ 72 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKA------ 72 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhH------
Confidence 468999999987 8899999999999999999999999999999999998654 4567777665543221100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHH-------HHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE-------KLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
...++..++++.+.... .....+.+++..... .+..........++.++++.+|+.. ..+++
T Consensus 73 ----~~~~~~~i~~~~q~~~~------~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 141 (241)
T cd03256 73 ----LRQLRRQIGMIFQQFNL------IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-KAYQR 141 (241)
T ss_pred ----HHHHHhccEEEcccCcc------cccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-hhCCC
Confidence 01122233333221111 001122222211100 0001112234567889999999964 45789
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G 221 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998764 579999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .|+++++
T Consensus 222 ~i~~-~~~~~~~ 232 (241)
T cd03256 222 RIVF-DGPPAEL 232 (241)
T ss_pred EEEe-ecCHHHh
Confidence 9964 4766554
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=326.60 Aligned_cols=207 Identities=23% Similarity=0.392 Sum_probs=165.8
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------eeE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LRI 562 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~i 562 (723)
+|+++||++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 7899999999975 35899999999999999999999999999999999999999999988762 248
Q ss_pred EEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 563 GRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 563 g~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++|... ..+++.++.... ...............+.++++.+|+.... ++++.+|||||+|||+|||||+.+|++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAV-LQIRDDLSAEQREDRANELMEEFHIEHLR-DSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred EEeccCCcccccCcHHHHHhhh-hhcccccCHHHHHHHHHHHHHHcCCHHHh-hcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998742 122333332111 11111000011234577899999997543 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d-----~v~~l~~G~i~~-~~~~~~~~~ 226 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE-----RAYIVSQGHLIA-HGTPTEILQ 226 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC-----EEEEEeCCeEEe-eCCHHHHhc
Confidence 9999999999999999998888765 4689999999999999995 999999999974 688877643
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=343.36 Aligned_cols=215 Identities=23% Similarity=0.330 Sum_probs=165.2
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.+..+......
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i~~~~~~------- 73 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRMNDVPPA------- 73 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHh-------
Confidence 58999999999999999999999999999999999999999999999998754 566777766655321110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++++.+.... .....+.+++..... ...........++.++++.+||.. ..++++.+||||
T Consensus 74 --------~~~i~~v~Q~~~l------~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~lgL~~-~~~~~~~~LSgG 137 (369)
T PRK11000 74 --------ERGVGMVFQSYAL------YPHLSVAENMSFGLK-LAGAKKEEINQRVNQVAEVLQLAH-LLDRKPKALSGG 137 (369)
T ss_pred --------HCCEEEEeCCccc------CCCCCHHHHHHhHHh-hcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHH
Confidence 0112222221100 111223333332211 111223345578899999999974 457999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 138 q~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~-~g 216 (369)
T PRK11000 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VG 216 (369)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-Ec
Confidence 999999999999999999999999999999999998888754 6799999999999999999999999999974 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 217 ~~~~i 221 (369)
T PRK11000 217 KPLEL 221 (369)
T ss_pred CHHHH
Confidence 76554
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=321.29 Aligned_cols=200 Identities=29% Similarity=0.394 Sum_probs=159.5
Q ss_pred CCeEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------
Q 048654 493 PPLLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------- 559 (723)
+++|+++||++.|++.. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 46899999999997532 24899999999999999999999999999999999999999999987652
Q ss_pred ----eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 ----~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..++|++|... ..+++.++.... .... ........+.+.++++.+++.... .+++..|||||||||+||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~-~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELP-ALLR-GESSRQSRNGAKALLEQLGLGKRL-DHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHH-HHhc-CCCHHHHHHHHHHHHHHcCCHhHh-hCChhhCCHHHHHHHHHHHH
Confidence 24889998742 222333332111 1111 110011235678899999997544 45678999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++. .| |++++|++|+++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~-----d~i~~l~~g~i~~ 226 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RC-----DRRLRLVNGQLQE 226 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hC-----CEEEEEECCEEEe
Confidence 99999999999999999999999999999765 458999999999985 47 4999999999863
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=327.62 Aligned_cols=210 Identities=28% Similarity=0.422 Sum_probs=166.3
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
+++|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 3 QPLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred CceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 458999999999975 35899999999999999999999999999999999999999999998763 1
Q ss_pred eEEEEccccc--cccCccccHHHHHH---------hhCC--CCCCC--cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHH
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLL---------RLHP--DQEGL--SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQK 625 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~---------~~~~--~~~~~--~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqk 625 (723)
.++|++|... ..+++.++...... ..+. ..... .....+..+++.+|+.... ++++.+||||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~ 159 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-NRQAGNLAYGQQ 159 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhh-hCChhhCCHHHH
Confidence 3678888642 22333333211100 0000 00000 1124567889999997544 467899999999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|||+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~g~i~- 233 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISD-----RIYVVNQGTPL- 233 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCeEE-
Confidence 9999999999999999999999999999999999999765 4689999999999999995 99999999997
Q ss_pred cCCCHHHHHH
Q 048654 702 FPGTFEEYKE 711 (723)
Q Consensus 702 ~~g~~~~~~~ 711 (723)
+.|+++++..
T Consensus 234 ~~~~~~~~~~ 243 (255)
T PRK11300 234 ANGTPEEIRN 243 (255)
T ss_pred ecCCHHHHhh
Confidence 4678777643
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=323.68 Aligned_cols=218 Identities=25% Similarity=0.347 Sum_probs=160.9
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.+..+........
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~------ 72 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITGLPPHEI------ 72 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCCCCHHHH------
Confidence 4689999999988999999999999999999999999999999999998654 45677776665432221110
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc---------CchHHHHHHHHHHHhCCCCccccCC
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL---------GSDAAEAQASKILAGLGFTKEMQGR 316 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~L~~lgl~~~~~~~ 316 (723)
.+..++++.+.... .....+.+++.......... .......++.++++.+|+.. ..++
T Consensus 73 ------~~~~i~~v~q~~~l------~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~ 139 (236)
T cd03219 73 ------ARLGIGRTFQIPRL------FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-LADR 139 (236)
T ss_pred ------HhcCEEEEeccccc------ccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-hhhC
Confidence 00112222111000 00112222222111110000 12234567889999999974 4578
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 140 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 140 PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999764 579999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++ +.|+.+++
T Consensus 220 ~i~-~~~~~~~~ 230 (236)
T cd03219 220 RVI-AEGTPDEV 230 (236)
T ss_pred EEE-eecCHHHh
Confidence 996 44665544
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=331.64 Aligned_cols=224 Identities=22% Similarity=0.250 Sum_probs=165.8
Q ss_pred ceEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAARG-----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~-----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
+|+++|++++|+. +.+|+||||+|.+|++++|+|+||||||||+++|+|++.| ..|.|.+.+..+.......
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~- 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVSSTSKQK- 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECccccccc-
Confidence 4899999999973 2599999999999999999999999999999999998654 5567777666543211000
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
....++..++++.+.... ......+.+++....... .....+...++.++|+.+|+.....++++.
T Consensus 78 --------~~~~~~~~ig~v~q~~~~-----~l~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 78 --------EIKPVRKKVGVVFQFPES-----QLFEETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred --------cHHHHHhhEEEEecCcch-----hcccchHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 001122333333221100 000112333332221111 122344567889999999996445579999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
+|||||||||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++..+||+|++|++|+++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999988754 579999999999999999999999999997
Q ss_pred EecCChhhHH
Q 048654 397 FYRGNFDDFE 406 (723)
Q Consensus 397 ~~~g~~~~~~ 406 (723)
+.|+++++.
T Consensus 224 -~~g~~~~~~ 232 (288)
T PRK13643 224 -SCGTPSDVF 232 (288)
T ss_pred -EECCHHHHH
Confidence 458777654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=332.20 Aligned_cols=208 Identities=28% Similarity=0.383 Sum_probs=166.2
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.++|+++||++.|++...++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 4689999999999753345899999999999999999999999999999999999999999998763 24
Q ss_pred EEEEccccc---cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 562 IGRYSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 562 ig~~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
++|++|.+. ...++.++.. +...... .........+..++..+||.... .+++.+|||||||||+|||||+.+|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~-~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVA-FGLENIG-VPREEMVERVDQALRQVGMEDFL-NREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHh-hhHhhCC-CCHHHHHHHHHHHHHHcCChhhh-hCCcccCCHHHHHHHHHHHHHHcCC
Confidence 899999752 1223333321 1111110 00001234578899999997654 4667999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+||||||||+|||+.++..|.++|.++ +.|||+||||++++. .| |+|++|++|+++ +.|+++++.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~-----d~i~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QA-----DRVIVMNKGEIL-EEGTPEEIF 228 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cC-----CEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999999876 358999999999997 48 499999999997 457777654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=324.33 Aligned_cols=215 Identities=26% Similarity=0.336 Sum_probs=161.0
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++||++.|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+.++......
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~------- 72 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQ------- 72 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCcc-------
Confidence 48999999999999999999999999999999999999999999999998654 566777766554321100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc----CchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL----GSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+..++++.+.... .....+.+++..... .... .......++.++++.+|+.. ..++++.+
T Consensus 73 --------~~~i~~v~q~~~~------~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 136 (239)
T cd03296 73 --------ERNVGFVFQHYAL------FRHMTVFDNVAFGLR-VKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQ 136 (239)
T ss_pred --------ccceEEEecCCcc------cCCCCHHHHHhhhhh-hccccccCCHHHHHHHHHHHHHHcCChh-hhhcChhh
Confidence 0111222111000 001122222221111 0001 12233456788999999964 45789999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999999999998764 579999999999999999999999999996
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+.+++
T Consensus 217 ~-~~~~~~~ 224 (239)
T cd03296 217 Q-VGTPDEV 224 (239)
T ss_pred E-ecCHHHH
Confidence 4 4665544
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=331.33 Aligned_cols=208 Identities=30% Similarity=0.423 Sum_probs=166.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
++|+++||++.|++. ..+|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|++++. ..+
T Consensus 2 ~~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 2 HLIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred ceEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 478999999999643 34899999999999999999999999999999999999999999998763 148
Q ss_pred EEEcccccc---ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 563 GRYSQHFVD---LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 563 g~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
+|++|.+.. ..++.++.. +..... ........+.+.++++.+||.... ++++..|||||||||+|||||+.+|+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIA-FGPINL-GLDEETVAHRVSSALHMLGLEELR-DRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred EEEecCcccccccccHHHHHH-hHHHHc-CCCHHHHHHHHHHHHHHCCChhHh-cCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 999987521 123322221 111111 110001234578899999997544 46679999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||||||+|||+.+...+.++|+++ +.|||++|||++++..+|| ||++|++|+++ +.|+++++.+
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~d-----rv~~l~~G~i~-~~g~~~~~~~ 227 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMAD-----YIYVMDKGRIV-AYGTVEEIFL 227 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEEECCeEE-EECCHHHHhc
Confidence 99999999999999999999999875 4689999999999999995 99999999997 4588887643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=321.04 Aligned_cols=202 Identities=28% Similarity=0.413 Sum_probs=160.6
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------eeEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LRIG 563 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ig 563 (723)
|+++||++.|++. .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 4689999999753 5899999999999999999999999999999999999999999987652 2488
Q ss_pred EEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhC-CCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 564 RYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF-GLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 564 ~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
|++|... ..+++.++.. +...... .......+..+++.+ ++.... ++++.+|||||||||+|||||+.+|++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~-~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 79 YVPEGRRIFPELTVEENLL-LGAYARR---RAKRKARLERVYELFPRLKERR-KQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred EeccccccCCCCcHHHHHH-HHhhhcC---chhHHHHHHHHHHHHHhhhhhh-hCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9998742 2223333221 1111111 111234466778887 465433 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~ 220 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIAD-----RAYVLERGRVVL-EGTAAELL 220 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcc-----EEEEeeCCeEEE-eCCHHHHh
Confidence 9999999999999999999999876 3599999999999999995 999999999974 57766543
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=320.27 Aligned_cols=210 Identities=28% Similarity=0.372 Sum_probs=154.7
Q ss_pred eEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 166 ITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 166 I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+.........
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~- 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKELA- 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhhcchhHHH-
Confidence 578999999986 7899999999999999999999999999999999998654 566777766554321110000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
...+..++++.+.... .....+.+++.... ...........+++.++++.+|+... .++++.+|
T Consensus 78 --------~~~~~~i~~~~q~~~~------~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~L 141 (218)
T cd03255 78 --------AFRRRHIGFVFQSFNL------LPDLTALENVELPL-LLAGVPKKERRERAEELLERVGLGDR-LNHYPSEL 141 (218)
T ss_pred --------HHHhhcEEEEeecccc------CCCCcHHHHHHHHH-hhcCCCHHHHHHHHHHHHHHcCCchh-hhcChhhc
Confidence 0011223333221110 00112223322211 11111222345678899999999743 47889999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++. +||+|++|++|++
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999999864 579999999999997 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=361.41 Aligned_cols=212 Identities=29% Similarity=0.465 Sum_probs=174.3
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccc-
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFV- 570 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~- 570 (723)
.+++|+++||++.|++. ..+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....+||++|++.
T Consensus 3 ~~~~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~ 81 (556)
T PRK11819 3 AQYIYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQL 81 (556)
T ss_pred ccEEEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC
Confidence 35799999999999722 3589999999999999999999999999999999999999999999877678999999742
Q ss_pred -cccCccccHHHHHHhh-------------CCCC---------------------CCCcHHHHHHHHHHhCCCCCCCCcC
Q 048654 571 -DLLTMEETPVSYLLRL-------------HPDQ---------------------EGLSKQEAVRAKLGKFGLPSHNHLT 615 (723)
Q Consensus 571 -~~~~~~~~~~~~~~~~-------------~~~~---------------------~~~~~~~~~~~~L~~~gl~~~~~~~ 615 (723)
+.+++.++........ .... ........+..+|..+||.. .++
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~ 159 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP--WDA 159 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc--ccC
Confidence 2334444432111000 0000 00011345778899999953 357
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEE
Q 048654 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVE 695 (723)
Q Consensus 616 ~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~ 695 (723)
++.+|||||||||+|||+|+.+|+||||||||||||+.++..+.+.|+++.+|||+||||++++..+|| +|++|+
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d-----~i~~l~ 234 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAG-----WILELD 234 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcC-----eEEEEe
Confidence 889999999999999999999999999999999999999999999999998899999999999999995 999999
Q ss_pred CCeEEecCCCHHHHHH
Q 048654 696 NGTVSRFPGTFEEYKE 711 (723)
Q Consensus 696 ~G~i~~~~g~~~~~~~ 711 (723)
+|+++.+.|++++|.+
T Consensus 235 ~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 235 RGRGIPWEGNYSSWLE 250 (556)
T ss_pred CCEEEEecCCHHHHHH
Confidence 9999778899988754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=313.40 Aligned_cols=209 Identities=27% Similarity=0.439 Sum_probs=173.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------ee
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ 561 (723)
.+|.++|+.++|+.+ .++++|||+|++||+|||+|||||||||.+.+++|+.+|++|+|.+++. ..
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 468899999999864 5899999999999999999999999999999999999999999998652 35
Q ss_pred EEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
+||++|.. +..+++.+|....+-....+........++..+|+.|+|.+.. +++..+||||||+||.|||||+.+|+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-DSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-cCcccccccchHHHHHHHHHHhcCCC
Confidence 89999974 4557777775433211111211111233467999999998654 46778999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+||||||++|+||.+...+.+++..+ +.+|+++-|+..+...+|| |.|+|.+|+|. +.|+++++.+
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~d-----RaYIi~~G~vl-a~G~p~ei~~ 228 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICD-----RAYIISDGKVL-AEGSPEEIVN 228 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhh-----eEEEEecCeEE-ecCCHHHHhc
Confidence 99999999999999988888887766 4589999999999999995 99999999997 6799988654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=338.20 Aligned_cols=211 Identities=19% Similarity=0.265 Sum_probs=165.4
Q ss_pred CeEEEEEEEEEcCC--CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC----CCcceEEECCc--------
Q 048654 494 PLLQLIEVSFSYPN--REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS----PTEGEVRRSQK-------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~--~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~----p~~G~I~~~~~-------- 559 (723)
++|+++||++.|+. ....+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999953 12358999999999999999999999999999999999997 58999998763
Q ss_pred -------eeEEEEcccccccc----CccccHHHHHHhh-CCC-C-CC-CcHHHHHHHHHHhCCCCCC--CCcCCCCCCCH
Q 048654 560 -------LRIGRYSQHFVDLL----TMEETPVSYLLRL-HPD-Q-EG-LSKQEAVRAKLGKFGLPSH--NHLTPIAKLSG 622 (723)
Q Consensus 560 -------~~ig~~~q~~~~~~----~~~~~~~~~~~~~-~~~-~-~~-~~~~~~~~~~L~~~gl~~~--~~~~~i~~LSG 622 (723)
..++|++|+....+ ++.++....+... ... . .. ......+.++|+.+||... ..++.+.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 14899999754322 2222222111111 000 0 00 0123467889999999742 12356689999
Q ss_pred HHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 623 GqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+.++..+|| +|++|++|+
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~d-----ri~vm~~G~ 236 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWAD-----KINVLYCGQ 236 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC-----EEEEEECCE
Confidence 9999999999999999999999999999999999999999875 4689999999999999995 999999999
Q ss_pred EEecCCCHHHHH
Q 048654 699 VSRFPGTFEEYK 710 (723)
Q Consensus 699 i~~~~g~~~~~~ 710 (723)
|++ .|+.+++.
T Consensus 237 ive-~g~~~~i~ 247 (330)
T PRK15093 237 TVE-TAPSKELV 247 (330)
T ss_pred EEE-ECCHHHHH
Confidence 985 47776653
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=324.68 Aligned_cols=206 Identities=26% Similarity=0.383 Sum_probs=164.4
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++||++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 34899999999999999999999999999999999999999999988763 24789
Q ss_pred Eccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC-CCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 565 YSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS-HNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 565 ~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~-~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
++|... ..+++.++... ...... .........+.++++.+++.. ....+++.+|||||+|||+|||||+.+|+||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 157 (242)
T cd03295 80 VIQQIGLFPHMTVEENIAL-VPKLLK-WPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL 157 (242)
T ss_pred EccCccccCCCcHHHHHHH-HHHHcC-CCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 998642 22333333221 111111 000012345778999999974 2334677999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||||+|||+.++..+.++|.++ +.|||+||||.+++..+|| +|++|++|+++. .|+++++.
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~ 224 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLAD-----RIAIMKNGEIVQ-VGTPDEIL 224 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999999876 3589999999999999995 999999999974 47777654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=317.60 Aligned_cols=210 Identities=25% Similarity=0.393 Sum_probs=157.2
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|+++.|+++++|+++||+|.+|++++|+|||||||||||++|+|+..| ..|+|.+.+..+......
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~-------- 70 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTDDKKN-------- 70 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccchh--------
Confidence 4789999999989999999999999999999999999999999999998654 456676666554211000
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
...++..++++.+.... .....+.+++.................++.++++.+|+.. ..++++.+|||||
T Consensus 71 ---~~~~~~~i~~~~q~~~~------~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 140 (213)
T cd03262 71 ---INELRQKVGMVFQQFNL------FPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-KADAYPAQLSGGQ 140 (213)
T ss_pred ---HHHHHhcceEEeccccc------CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhhCccccCHHH
Confidence 01122233333221110 0011222332221111111222344567889999999974 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||++|||++++..+||+|++|++|++
T Consensus 141 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 141 QQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999865 57999999999999999999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=323.77 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=162.5
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++||++.|+ ++++|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|+|.+.+..+......
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~------ 72 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGK------ 72 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhhhCCHH------
Confidence 378999999998 78899999999999999999999999999999999998654 456777666544321110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHH-------HHHhcCchHHHHHHHHHHHhCCCCccccCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE-------KLQILGSDAAEAQASKILAGLGFTKEMQGR 316 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 316 (723)
....++..++++.+.... .....+.+++..... .+..........++.++++.+|+.. ..++
T Consensus 73 ----~~~~~~~~i~~v~q~~~~------~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~ 141 (243)
T TIGR02315 73 ----KLRKLRRRIGMIFQHYNL------IERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-KAYQ 141 (243)
T ss_pred ----HHHHHHhheEEEcCCCcc------cccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-hhcC
Confidence 001122333333221110 001122222211000 0000111234567889999999964 4578
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++.++||+|++|++
T Consensus 142 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 142 RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 99999999999999999999999999999999999999999999998764 57999999999999999999999999
Q ss_pred CEEEEecCChhhH
Q 048654 393 QKLHFYRGNFDDF 405 (723)
Q Consensus 393 G~i~~~~g~~~~~ 405 (723)
|+++ +.|+++++
T Consensus 222 G~i~-~~~~~~~~ 233 (243)
T TIGR02315 222 GEIV-FDGAPSEL 233 (243)
T ss_pred CEEE-ecCCHHHh
Confidence 9997 45766554
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=312.97 Aligned_cols=208 Identities=28% Similarity=0.462 Sum_probs=171.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------ee
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ 561 (723)
+||+++||+..|+. ..+|++|||++.+||+++|+|+||+||||||++|+|+.+|.+|+|.+.++ ..
T Consensus 2 ~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 2 PMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred CceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 58999999999986 45899999999999999999999999999999999999999999998874 35
Q ss_pred EEEEccc--cccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQH--FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
++|+||. .+..+++.+|...... ...... .....+..+.+.|---....+++.++|||||||.++|||||+.+|+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~-~~~~~~--~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAY-ARRDKE--AQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhh-cccccc--cccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 8999984 5667888777542211 111100 0111255667777532233456789999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHcC---c-eEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEFT---G-GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~~---~-tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
+|||||||.||-|.-...|.++|++++ + ||++|.++..++.+++| |.|||++|+|+ +.|+.+++.+.
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaD-----r~yvle~Griv-~~G~~~eL~~~ 227 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIAD-----RGYVLENGRIV-LSGTAAELLAD 227 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhC-----EEEEEeCCEEE-EecCHHHHhcC
Confidence 999999999999999999999998875 3 89999999999999995 99999999997 68999887654
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=326.05 Aligned_cols=209 Identities=25% Similarity=0.345 Sum_probs=164.8
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~-------- 559 (723)
+|+|+++||++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|++. |++|+|.+++.
T Consensus 4 ~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 4 PPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CcEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 578999999999975 358999999999999999999999999999999999974 58999987652
Q ss_pred -----eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|..... .++.++... ..............+.+..+++.+++... ...+++.+|||||||||+|
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 160 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAY-GLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 2489999874211 123222211 11111100000123457788999998531 2345678999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+|+. .|++++
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~ 234 (253)
T PRK14242 161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSD-----VTAFFYMGKLIE-VGPTEQ 234 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCC-----EEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999999874 589999999999999995 999999999974 578777
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
+.
T Consensus 235 ~~ 236 (253)
T PRK14242 235 IF 236 (253)
T ss_pred HH
Confidence 64
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=319.87 Aligned_cols=195 Identities=30% Similarity=0.452 Sum_probs=157.0
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------ee
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------LR 561 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------~~ 561 (723)
|+++|+++.|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 35899999999999999999999999999999999999999999987653 14
Q ss_pred EEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
++|++|... ..+++.++.... ..... .......+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|+
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~ 156 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFA-LEVTG-VPPREIRKRVPAALELVGLSHKH-RALPAELSGGEQQRVAIARAIVNSPT 156 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHH-HHHcC-CCHHHHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHHHHHHHHHcCCC
Confidence 789998642 223333332211 11111 00001234577899999997544 45678999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
||||||||+|||+.++..+.+.|+++ +.|||+||||.+++..+|| ++++|++|++
T Consensus 157 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d-----~i~~l~~G~~ 214 (214)
T cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRH-----RVIALERGKL 214 (214)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEeCCcC
Confidence 99999999999999999999999886 3689999999999999995 9999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=336.49 Aligned_cols=212 Identities=22% Similarity=0.373 Sum_probs=167.7
Q ss_pred CCCeEEEEEEEEEcCC--CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC---cceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPN--REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT---EGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~--~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~---~G~I~~~~~------- 559 (723)
..++|+++||++.|+. +...+|+||||+|.+||+++|+|+||||||||+++|+|+++|. +|+|.+++.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 3578999999999953 2235899999999999999999999999999999999999996 999988763
Q ss_pred --------eeEEEEccccccc----cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC--CCcCCCCCCCHHHH
Q 048654 560 --------LRIGRYSQHFVDL----LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH--NHLTPIAKLSGGQK 625 (723)
Q Consensus 560 --------~~ig~~~q~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~--~~~~~i~~LSGGqk 625 (723)
..++|++|+.... +++.++.... +..+...........+.++|+.+||... ...+.+.+|||||+
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~-~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV-LMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 1589999985322 2333322221 1121111000123457788999999742 12346689999999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|||+|||||+.+|+||||||||++||+.++..|.++|.++ +.|||+||||+.++..+|| +|++|++|+|++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~D-----ri~vm~~G~ive 242 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICD-----KVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC-----EEEEEECCEEEE
Confidence 9999999999999999999999999999999999998776 4589999999999999995 999999999986
Q ss_pred cCCCHHHHH
Q 048654 702 FPGTFEEYK 710 (723)
Q Consensus 702 ~~g~~~~~~ 710 (723)
.|+.+++.
T Consensus 243 -~g~~~~i~ 250 (330)
T PRK09473 243 -YGNARDVF 250 (330)
T ss_pred -ECCHHHHH
Confidence 47776654
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=330.29 Aligned_cols=222 Identities=21% Similarity=0.296 Sum_probs=165.1
Q ss_pred ceEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAARG-----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~-----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.|+++||++.|++ +++|+||||+|.+|+++||+||||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~- 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDITDKKVKL- 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECCCcCccH-
Confidence 3899999999974 4799999999999999999999999999999999998654 5567777666553211100
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc-cccCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK-EMQGRPT 318 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~ 318 (723)
..++..++++.+.... ......+.+++..... ...+...+...++.++++.+||.. ...++++
T Consensus 79 ----------~~~~~~ig~v~q~~~~-----~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 79 ----------SDIRKKVGLVFQYPEY-----QLFEETIEKDIAFGPI-NLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ----------HHHhhceEEEecCchh-----ccccccHHHHHHhHHH-HCCCCHHHHHHHHHHHHHHcCCCchhhccCCc
Confidence 0112223333221100 0001122333322111 111233445567899999999961 3457999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 143 ~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~ 222 (287)
T PRK13637 143 FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGK 222 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998754 5799999999999999999999999999
Q ss_pred EEEecCChhhHH
Q 048654 395 LHFYRGNFDDFE 406 (723)
Q Consensus 395 i~~~~g~~~~~~ 406 (723)
++. .|+.+++.
T Consensus 223 i~~-~g~~~~~~ 233 (287)
T PRK13637 223 CEL-QGTPREVF 233 (287)
T ss_pred EEE-ECCHHHHH
Confidence 974 57766653
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=323.67 Aligned_cols=221 Identities=24% Similarity=0.283 Sum_probs=166.8
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+..+. |..|+|.+.+..+......
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~--- 78 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI--- 78 (250)
T ss_pred ceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH---
Confidence 3589999999999889999999999999999999999999999999999987653 4578888877655321111
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhCCCCc---cccC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL--GSDAAEAQASKILAGLGFTK---EMQG 315 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~ 315 (723)
.++..++++.+.... .....+.+++..... .... ......+++.++++.+|+.. ...+
T Consensus 79 ----------~~~~~i~~v~q~~~~------~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 141 (250)
T PRK14247 79 ----------ELRRRVQMVFQIPNP------IPNLSIFENVALGLK-LNRLVKSKKELQERVRWALEKAQLWDEVKDRLD 141 (250)
T ss_pred ----------HHhccEEEEeccCcc------CCCCcHHHHHHHHHH-hccccCCHHHHHHHHHHHHHHcCCCcchhhhhc
Confidence 112223333221110 011122333322111 1111 12334567889999999853 2357
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 142 ~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14247 142 APAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 889999999999999999999999999999999999999999999999875 579999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
++.. .|+.+++
T Consensus 222 ~i~~-~g~~~~~ 232 (250)
T PRK14247 222 QIVE-WGPTREV 232 (250)
T ss_pred eEEE-ECCHHHH
Confidence 9964 4776654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=330.73 Aligned_cols=223 Identities=23% Similarity=0.290 Sum_probs=165.0
Q ss_pred ceEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCC-ChHH
Q 048654 165 DITIDNFSVAARG-----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD-DRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~-----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~-~~~~ 238 (723)
.|+++||+++|++ .++|+||||+|++|++++|+|+||||||||+++|+|+..| ..|+|.+.++.+... ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~ 79 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVITAGKKNKK 79 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECccccccch
Confidence 3899999999974 5799999999999999999999999999999999998654 566777777665321 0000
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
...++..++++.+.... ......+.+++...... ..........++.++|+.+||.....++++
T Consensus 80 ----------~~~~~~~ig~v~q~~~~-----~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (290)
T PRK13634 80 ----------LKPLRKKVGIVFQFPEH-----QLFEETVEKDICFGPMN-FGVSEEDAKQKAREMIELVGLPEELLARSP 143 (290)
T ss_pred ----------HHHHHhhEEEEeeCchh-----hhhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCChhhhhCCc
Confidence 00112223333221000 00011223333211111 112233445678999999999644557899
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||||++|++|+
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~ 223 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGT 223 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999988754 6799999999999999999999999999
Q ss_pred EEEecCChhhHH
Q 048654 395 LHFYRGNFDDFE 406 (723)
Q Consensus 395 i~~~~g~~~~~~ 406 (723)
++ +.|+.+++.
T Consensus 224 i~-~~g~~~~~~ 234 (290)
T PRK13634 224 VF-LQGTPREIF 234 (290)
T ss_pred EE-EECCHHHHh
Confidence 96 457766653
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=329.78 Aligned_cols=224 Identities=21% Similarity=0.312 Sum_probs=165.8
Q ss_pred ceEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAARG-----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~-----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.|+++||+++|++ +++|+||||+|.+|++++|+|+||||||||+++|+|+..| ..|+|.+.+.++......
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~~~~~~-- 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITITHKTKD-- 77 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECcccccc--
Confidence 4899999999964 4699999999999999999999999999999999998654 566777777665321100
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
.....++..++++.+.... ......+.+++...... ..........++.++++.+||.....++++.
T Consensus 78 -------~~~~~~~~~ig~v~q~~~~-----~l~~~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 144 (286)
T PRK13646 78 -------KYIRPVRKRIGMVFQFPES-----QLFEDTVEREIIFGPKN-FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF 144 (286)
T ss_pred -------chHHHHHhheEEEecChHh-----ccchhhHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCCcc
Confidence 0011123334443221100 00011222333211111 1123334567789999999996344578999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 145 ~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i 224 (286)
T PRK13646 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224 (286)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999998764 57999999999999999999999999999
Q ss_pred EEecCChhhHH
Q 048654 396 HFYRGNFDDFE 406 (723)
Q Consensus 396 ~~~~g~~~~~~ 406 (723)
+. .|+++++.
T Consensus 225 ~~-~g~~~~~~ 234 (286)
T PRK13646 225 VS-QTSPKELF 234 (286)
T ss_pred EE-ECCHHHHH
Confidence 74 57766653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=332.56 Aligned_cols=209 Identities=24% Similarity=0.309 Sum_probs=164.1
Q ss_pred CeEEEEEEEEEcCCCc---ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------
Q 048654 494 PLLQLIEVSFSYPNRE---DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~---~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------- 559 (723)
..|+++|+++.|+++. ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4589999999997532 24899999999999999999999999999999999999999999987652
Q ss_pred -----eeEEEEccccccc---cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 -----~~ig~~~q~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|..... .++.++.. +..... ..........+..+++.++|......+++.+|||||||||+||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~-~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIA-FGPVNL-GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHH-HHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 1478999874211 12222221 111111 1100011244678899999953334467899999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++.++|| +|++|++|+++. .|+++
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~ 236 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD-----EVIVMHEGKVIS-IGSPF 236 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-eCCHH
Confidence 9999999999999999999999999999998875 3589999999999999995 999999999974 57776
Q ss_pred HHH
Q 048654 708 EYK 710 (723)
Q Consensus 708 ~~~ 710 (723)
++.
T Consensus 237 ~~~ 239 (289)
T PRK13645 237 EIF 239 (289)
T ss_pred HHh
Confidence 653
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=336.84 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=159.9
Q ss_pred EcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEEEEccccc--c
Q 048654 504 SYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIGRYSQHFV--D 571 (723)
Q Consensus 504 ~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig~~~q~~~--~ 571 (723)
.|++ ..+|+||||+|.+|+++||+||||||||||+++|+|+++|++|+|.+++. ..+||++|... .
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 5654 35899999999999999999999999999999999999999999998763 24899999742 2
Q ss_pred ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCC
Q 048654 572 LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651 (723)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD 651 (723)
.+++.++.. +....+. .......+.+.++|+.+||.... ++++.+|||||||||+||+||+.+|++|||||||+|||
T Consensus 80 ~~tv~e~l~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 80 DLTGRENLE-MMGRLYG-LPKDEAEERAEELLELFELGEAA-DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CCcHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHHcCChhHh-CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 234433322 1111111 00001234578899999997544 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 652 MQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 652 ~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
+.++..+.++|+++. .|||++|||++++..+|| +|++|++|+|+. .|+++++...
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~l~~~ 214 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCD-----RIAIIDHGRIIA-EGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHHHh
Confidence 999999999998873 689999999999999995 999999999974 6888877543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=335.83 Aligned_cols=227 Identities=19% Similarity=0.210 Sum_probs=166.3
Q ss_pred cceEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC--CCCcEEEEEeeeeecCCChH
Q 048654 164 KDITIDNFSVAA----RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP--VPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 164 ~~I~l~nls~~y----~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~--~~~~~~i~~~~q~~~~~~~~ 237 (723)
.+|+++||++.| +...+|+||||+|.+||++||||+||||||||+++|+|+..+ .+..|+|.+.++++......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 368999999999 446799999999999999999999999999999999998653 24678888887766433221
Q ss_pred HHHHHHHhhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-----CchHHHHHHHHHHHhCCCCc
Q 048654 238 AIQAVVSAHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-----GSDAAEAQASKILAGLGFTK 311 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~L~~lgl~~ 311 (723)
.+. .++ ..++++.+.... . ......+.+.+.+........ .......++.++|+.+||.+
T Consensus 82 ~~~----------~~~~~~i~~v~Q~~~~--~--l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~ 147 (330)
T PRK15093 82 ERR----------KLVGHNVSMIFQEPQS--C--LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred HHH----------HHhCCCEEEEecCcch--h--cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC
Confidence 111 111 123333221100 0 000112223222211110000 11234567899999999963
Q ss_pred --cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCC
Q 048654 312 --EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 312 --~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad 385 (723)
...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||
T Consensus 148 ~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 148 HKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred hHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 2347899999999999999999999999999999999999999999999998764 6799999999999999999
Q ss_pred EEEEEeCCEEEEecCChhhH
Q 048654 386 EIIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 386 ~Ii~L~~G~i~~~~g~~~~~ 405 (723)
+|++|++|+|+. .|+.+++
T Consensus 228 ri~vm~~G~ive-~g~~~~i 246 (330)
T PRK15093 228 KINVLYCGQTVE-TAPSKEL 246 (330)
T ss_pred EEEEEECCEEEE-ECCHHHH
Confidence 999999999975 4776554
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=317.59 Aligned_cols=213 Identities=23% Similarity=0.297 Sum_probs=159.4
Q ss_pred ceEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAA-RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y-~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+.++.......
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~----- 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDITRLKNRE----- 73 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCChhH-----
Confidence 37899999999 678899999999999999999999999999999999998654 5667777665543211110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
...++..++++.+.... .....+.+++.... ............++.++++.+|+.. ..++++.+|||
T Consensus 74 -----~~~~~~~i~~~~q~~~~------~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~ 140 (222)
T PRK10908 74 -----VPFLRRQIGMIFQDHHL------LMDRTVYDNVAIPL-IIAGASGDDIRRRVSAALDKVGLLD-KAKNFPIQLSG 140 (222)
T ss_pred -----HHHHHhheEEEecCccc------cccccHHHHHHhHH-HhcCCCHHHHHHHHHHHHHHcCChh-hhhCCchhCCH
Confidence 01122333333221110 00112223222111 1111222334556788999999974 45789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 141 GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999999999999999999999999999999999999988865 5799999999999999999999999999863
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=329.75 Aligned_cols=206 Identities=31% Similarity=0.459 Sum_probs=165.8
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------ee
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------LR 561 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------~~ 561 (723)
||+++||++.|++. ..+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 57899999999742 35899999999999999999999999999999999999999999987662 13
Q ss_pred EEEEcccccc---ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 562 IGRYSQHFVD---LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 562 ig~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
++|++|.... ..++.++.. +....+ ..........+.++++.+||.+.. ++++.+|||||+|||+|||||+.+|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~-~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~Gq~qrv~laral~~~p 156 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVA-FGPLNL-GLSKEEVEKRVKEALKAVGMEGFE-NKPPHHLSGGQKKRVAIAGILAMKP 156 (275)
T ss_pred eEEEeeChhhhhccccHHHHHH-HHHHHc-CCCHHHHHHHHHHHHHHCCCchhh-cCChhhCCHHHHHHHHHHHHHhcCC
Confidence 7899997421 122322221 111111 110001234577899999997654 4678999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 157 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~ 225 (275)
T PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYAD-----KVYVMSDGKIIK-EGTPKEVF 225 (275)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999887 3589999999999999995 999999999975 58887764
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=320.89 Aligned_cols=208 Identities=23% Similarity=0.339 Sum_probs=157.1
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+.++.......
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~~~~~~------- 71 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTDLPPKD------- 71 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCccc-------
Confidence 5789999999999999999999999999999999999999999999998654 4567777666543211100
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
..++++.+.... .....+.+++.... ............++.++++.+|+.. ..++++.+|||||
T Consensus 72 --------~~i~~~~q~~~~------~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 135 (213)
T cd03301 72 --------RDIAMVFQNYAL------YPHMTVYDNIAFGL-KLRKVPKDEIDERVREVAELLQIEH-LLDRKPKQLSGGQ 135 (213)
T ss_pred --------ceEEEEecChhh------ccCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCHH-HHhCChhhCCHHH
Confidence 011111111000 00111222222111 1111223344567889999999964 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||++|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.+
T Consensus 136 ~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 136 RQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999999999999999999999999998764 57999999999999999999999999998743
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=316.62 Aligned_cols=210 Identities=27% Similarity=0.358 Sum_probs=156.9
Q ss_pred eEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 166 ITIDNFSVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 166 I~l~nls~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
|+++|+++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~------ 72 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRA------ 72 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHH------
Confidence 468999999965 6899999999999999999999999999999999998654 5667777666543221110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++..++++.+.... .....+.+++..... ...........++.++++.+|+.. ..++++.+||||
T Consensus 73 ----~~~~~~~i~~v~q~~~~------~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G 140 (214)
T cd03292 73 ----IPYLRRKIGVVFQDFRL------LPDRNVYENVAFALE-VTGVPPREIRKRVPAALELVGLSH-KHRALPAELSGG 140 (214)
T ss_pred ----HHHHHHheEEEecCchh------ccCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhcCHH
Confidence 01122233333221110 011122333322111 111222334567889999999974 457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|++
T Consensus 141 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 141 EQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999865 57999999999999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=321.94 Aligned_cols=221 Identities=23% Similarity=0.290 Sum_probs=160.3
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++||+++|+++++|+|+||+|++|++++|+||||||||||+++|+|+....|..|.|.+.+..+........
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~------ 74 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER------ 74 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh------
Confidence 57899999999999999999999999999999999999999999999984223566778777665432211110
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHh------cCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI------LGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
.+..+.++.+.... .....+.+.+......... ........++.++++.+|+.....++++.
T Consensus 75 ------~~~~i~~v~q~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 75 ------ARAGLFLAFQYPEE------IPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred ------hccceEeeeccccc------cCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 00011111111000 0011112222111111110 11123346788999999996444567776
Q ss_pred -CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhh-CCEEEEEeCCE
Q 048654 320 -SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTV-CTEIIHLHDQK 394 (723)
Q Consensus 320 -~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~i-ad~Ii~L~~G~ 394 (723)
+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+ ||+|++|++|+
T Consensus 143 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~ 222 (243)
T TIGR01978 143 EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGR 222 (243)
T ss_pred cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCE
Confidence 59999999999999999999999999999999999999999999876 57999999999999998 89999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++ +.|+++.+
T Consensus 223 i~-~~g~~~~~ 232 (243)
T TIGR01978 223 IV-KSGDVELA 232 (243)
T ss_pred EE-EecCHHHh
Confidence 96 45766543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=359.55 Aligned_cols=210 Identities=30% Similarity=0.579 Sum_probs=171.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccc--cc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFV--DL 572 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~--~~ 572 (723)
||+++|++++|+++ .+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+...++|++|... ..
T Consensus 1 ml~i~~ls~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQFGAK--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEeCCc--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 58899999999753 589999999999999999999999999999999999999999999987777999999642 22
Q ss_pred cCccccHHHHHH----------hhC--CC------------------CCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCH
Q 048654 573 LTMEETPVSYLL----------RLH--PD------------------QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSG 622 (723)
Q Consensus 573 ~~~~~~~~~~~~----------~~~--~~------------------~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSG 622 (723)
+++.++...... ..+ +. ..+.....++..+|+.+||......+++.+|||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 233222211000 000 00 000112345778999999975443457899999
Q ss_pred HHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEec
Q 048654 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702 (723)
Q Consensus 623 GqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~ 702 (723)
||||||+|||+|+.+|+||||||||+|||+.++..|.++|.+.+.|||+||||++++..+|| +|++|++|+++.+
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d-----~i~~l~~g~i~~~ 233 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCT-----HMADLDYGELRVY 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcc-----eEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999888899999999999999995 9999999999667
Q ss_pred CCCHHHHHH
Q 048654 703 PGTFEEYKE 711 (723)
Q Consensus 703 ~g~~~~~~~ 711 (723)
.|++++|.+
T Consensus 234 ~g~~~~~~~ 242 (530)
T PRK15064 234 PGNYDEYMT 242 (530)
T ss_pred cCCHHHHHH
Confidence 899988754
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=324.09 Aligned_cols=225 Identities=19% Similarity=0.272 Sum_probs=166.6
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~ 238 (723)
...+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+..|. +..|+|.+.++.+......
T Consensus 4 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~- 82 (254)
T PRK14273 4 NEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD- 82 (254)
T ss_pred CCceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc-
Confidence 344699999999999889999999999999999999999999999999999987653 3578888777654321100
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC---ccccC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT---KEMQG 315 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~ 315 (723)
...++..++++.+.... . ...+.+++.................++.++++.+|+. ....+
T Consensus 83 ----------~~~~~~~i~~v~q~~~~------~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 83 ----------ILELRRKIGMVFQTPNP------F-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred ----------HHHHhhceEEEeecccc------c-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh
Confidence 00112233333221110 0 1122233322111110011223456788889998873 12347
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|
T Consensus 146 ~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 225 (254)
T PRK14273 146 TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNG 225 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999999876 479999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .|+.+++
T Consensus 226 ~i~~-~g~~~~~ 236 (254)
T PRK14273 226 CIEE-ESSTDEL 236 (254)
T ss_pred EEEE-eCCHHHH
Confidence 9974 4666554
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=319.46 Aligned_cols=195 Identities=26% Similarity=0.414 Sum_probs=156.6
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------eeE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------LRI 562 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------~~i 562 (723)
|+++||++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999975 35899999999999999999999999999999999999999999988663 237
Q ss_pred EEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 563 GRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 563 g~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++|... ..+++.++......... ..........+.++++.+|+.... ++++.+|||||+|||+|||||+.+|+|
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVK-GMSKAEAEERALELLEKVGLADKA-DAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHh-hhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 88988642 12233333211111011 110001234577889999997544 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
|||||||+|||+.++..+.++|.++ +.|||++|||++++..+|| +|++|++|+|
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d-----~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVAD-----RVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEeCCcC
Confidence 9999999999999999999999876 3589999999999999995 9999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=340.64 Aligned_cols=217 Identities=24% Similarity=0.335 Sum_probs=167.7
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
.++|+++|+++.|+++++|+|+||+|.+|++++|+|||||||||||++|+|+.. |..|+|.+.+..+......
T Consensus 12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~----- 84 (375)
T PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAE----- 84 (375)
T ss_pred CceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHH-----
Confidence 346999999999999999999999999999999999999999999999999865 4567787777665432110
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
...++++.+.... .....+.+++...+. ...........++.++++.+||.. ..++++.+||
T Consensus 85 ----------~r~ig~vfQ~~~l------fp~ltv~eNi~~~l~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LS 146 (375)
T PRK09452 85 ----------NRHVNTVFQSYAL------FPHMTVFENVAFGLR-MQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLS 146 (375)
T ss_pred ----------HCCEEEEecCccc------CCCCCHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCC
Confidence 0112222211100 112233444433221 112233445678899999999974 5689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++||+..+.+|.+.|+++ +.|+|+||||++++..+||+|++|++|+++.
T Consensus 147 gGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~- 225 (375)
T PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ- 225 (375)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-
Confidence 99999999999999999999999999999999999999888754 6799999999999999999999999999975
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
.|++.++
T Consensus 226 ~g~~~~i 232 (375)
T PRK09452 226 DGTPREI 232 (375)
T ss_pred EcCHHHH
Confidence 4676554
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=326.13 Aligned_cols=206 Identities=33% Similarity=0.416 Sum_probs=165.0
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
+|+++|+++.|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 68999999999753 5899999999999999999999999999999999999999999998763 2478
Q ss_pred EEccccccccCccccHHHHHHhhC-CCCCC-CcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc------
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLH-PDQEG-LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM------ 635 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~------ 635 (723)
|++|..... ...+....+.... ..... ......+..+++.+||.... ++.+.+|||||||||+|||||+
T Consensus 80 ~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGe~qrv~la~al~~~~~~~ 156 (258)
T PRK13548 80 VLPQHSSLS--FPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-GRDYPQLSGGEQQRVQLARVLAQLWEPD 156 (258)
T ss_pred EEccCCcCC--CCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-cCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 999874211 1123222221111 10000 01234577899999997544 4677999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++ ..|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~-~~~~~~~~~~ 230 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYAD-----RIVLLHQGRLV-ADGTPAEVLT 230 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcC-----EEEEEECCEEE-eeCCHHHHhC
Confidence 599999999999999999999999999875 3589999999999999995 99999999997 4578877644
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=320.97 Aligned_cols=208 Identities=28% Similarity=0.414 Sum_probs=167.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------ee
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ 561 (723)
++|+++|+++.|++ ..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 47899999999975 35899999999999999999999999999999999999999999988763 13
Q ss_pred EEEEccccc--cccCccccHHHHHHhhCC----CCCCC---cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRLHP----DQEGL---SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
++|++|... ..+++.++.... ..... ...+. .....+..+++.+|+.... ++++.+|||||+|||+|||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELA-LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-DRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHh-hhcccccccccccccHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHH
Confidence 889988642 223333332111 11000 00000 1234578899999997544 4677999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++ ..|+++++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIAD-----KVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC-----EEEEEECCeEE-eeCCHHHHh
Confidence 9999999999999999999999999999999874 599999999999999995 99999999997 457887765
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
.
T Consensus 231 ~ 231 (242)
T TIGR03411 231 A 231 (242)
T ss_pred c
Confidence 3
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=325.52 Aligned_cols=217 Identities=27% Similarity=0.386 Sum_probs=162.9
Q ss_pred eEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 166 ITIDNFSVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 166 I~l~nls~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
|+++|++++|++ +++|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|+|.+.+..+.......
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~------ 72 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVE------ 72 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCcCChHH------
Confidence 468999999988 8899999999999999999999999999999999998654 4566777665543211111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc-cccCCCCCCCCh
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK-EMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSG 323 (723)
++..++++.+.... .....+.+++.... .+.........+++.++++.+|+.. ...++++.+|||
T Consensus 73 -------~~~~i~~~~q~~~~------~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~ 138 (242)
T cd03295 73 -------LRRKIGYVIQQIGL------FPHMTVEENIALVP-KLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSG 138 (242)
T ss_pred -------hhcceEEEccCccc------cCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCH
Confidence 11222333221110 00112233332211 1111222344567889999999974 245789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
||||||+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+|||+++++..+||+|++|++|+++. .
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~ 217 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-V 217 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-e
Confidence 9999999999999999999999999999999999999998764 5799999999999999999999999999974 4
Q ss_pred CChhhH
Q 048654 400 GNFDDF 405 (723)
Q Consensus 400 g~~~~~ 405 (723)
|+.+.+
T Consensus 218 ~~~~~~ 223 (242)
T cd03295 218 GTPDEI 223 (242)
T ss_pred cCHHHH
Confidence 665444
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=323.42 Aligned_cols=208 Identities=25% Similarity=0.355 Sum_probs=164.8
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----cceEEECCc----------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-----EGEVRRSQK---------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-----~G~I~~~~~---------- 559 (723)
+|+++||++.|++. .+|+|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 1 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 47899999999753 4899999999999999999999999999999999999998 999987653
Q ss_pred ---eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 560 ---~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~lAr 632 (723)
..++|++|...-. .++.++.... ...............+..+++.+|+.. ....+++.+|||||||||+|||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYG-PRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhH-HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 2488999874211 2333332111 111110000012345778999999962 2234677999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|++|||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~ 231 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISD-----RTAFFYDGELVE-YGPTEQIF 231 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999998874 699999999999999995 999999999974 57877764
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
.
T Consensus 232 ~ 232 (247)
T TIGR00972 232 T 232 (247)
T ss_pred h
Confidence 3
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=323.36 Aligned_cols=206 Identities=24% Similarity=0.340 Sum_probs=165.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------- 559 (723)
+|+++|+++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 57899999999753 5899999999999999999999999999999999999999999988653
Q ss_pred --eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 560 --LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 560 --~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
..++|++|... ..+++.++.......... .........+..+++.+|+.... ++++..|||||||||+|||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG-LSKDQALARAEKLLERLRLKPYA-DRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHh
Confidence 14789998642 222333332111111111 00001234577889999997544 4667999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
.+|+||||||||+|||+.++..+.++|+++ +.|||+||||.+++..+|| ++++|++|+++ +.|+++++.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d-----~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS-----RVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC-----EEEEEECCEEE-EeCCHHHhc
Confidence 999999999999999999999999999875 3689999999999999995 99999999997 457877764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=324.21 Aligned_cols=214 Identities=29% Similarity=0.408 Sum_probs=160.2
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+.|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|.|.+.+.++.......
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~----- 74 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDIKTIDVID----- 74 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcChHH-----
Confidence 458999999999989999999999999999999999999999999999998654 5567777665543211110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
++..++++.+.... . ...+.+++.... ... .....++.++++.+|+.....++++.+|||
T Consensus 75 --------~~~~i~~~~q~~~~------~-~~tv~e~l~~~~----~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 134 (241)
T PRK14250 75 --------LRRKIGMVFQQPHL------F-EGTVKDNIEYGP----MLK-GEKNVDVEYYLSIVGLNKEYATRDVKNLSG 134 (241)
T ss_pred --------hhhcEEEEecCchh------c-hhhHHHHHhcch----hhc-CcHHHHHHHHHHHcCCCHHHhhCCcccCCH
Confidence 11122222211000 0 011112111100 001 112356788999999964445789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~- 213 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY- 213 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe-
Confidence 9999999999999999999999999999999999999988753 67999999999999999999999999999754
Q ss_pred CChhhH
Q 048654 400 GNFDDF 405 (723)
Q Consensus 400 g~~~~~ 405 (723)
|+..++
T Consensus 214 ~~~~~~ 219 (241)
T PRK14250 214 AKTYDF 219 (241)
T ss_pred CCHHHH
Confidence 555444
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=321.68 Aligned_cols=223 Identities=20% Similarity=0.250 Sum_probs=165.2
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC---CCCCCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK---IPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~---~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
++|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+. .+.+..|+|.+.+..+......
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~--- 78 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ--- 78 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc---
Confidence 4689999999999999999999999999999999999999999999999962 2223468888777655321100
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCc---cccCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTK---EMQGR 316 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~ 316 (723)
...++..++++++.... . ...+.+++...+. ..... ......++.++++.+|+.. ...++
T Consensus 79 --------~~~~~~~i~~v~q~~~~------~-~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (250)
T PRK14245 79 --------VDELRKNVGMVFQRPNP------F-PKSIFENVAYGLR-VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKE 142 (250)
T ss_pred --------HHHHhhheEEEecCCcc------C-cccHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhC
Confidence 01112233333322111 0 0122222221111 11111 1234567888999999853 23468
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 143 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 143 SAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGE 222 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999876 4799999999999999999999999999
Q ss_pred EEEecCChhhHH
Q 048654 395 LHFYRGNFDDFE 406 (723)
Q Consensus 395 i~~~~g~~~~~~ 406 (723)
++. .|+.+++.
T Consensus 223 ~~~-~~~~~~~~ 233 (250)
T PRK14245 223 MVE-YDDTKKIF 233 (250)
T ss_pred EEE-ECCHHHHh
Confidence 964 57766653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=318.10 Aligned_cols=209 Identities=29% Similarity=0.423 Sum_probs=159.6
Q ss_pred ceEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARGK----ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~~----~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++|++++|+++ ++|+|+||+|++|++++|+|+||||||||+++|+|+..| .+|+|.+.+..+.. ...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~-~~~--- 74 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVVK-EPA--- 74 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEccc-CHH---
Confidence 37899999999876 899999999999999999999999999999999998655 45667666655431 110
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
.++..++++.+.... .....+.+++.... ............++.++++.+|+.+ ..++++.+
T Consensus 75 ----------~~~~~i~~~~q~~~~------~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 136 (218)
T cd03266 75 ----------EARRRLGFVSDSTGL------YDRLTARENLEYFA-GLYGLKGDELTARLEELADRLGMEE-LLDRRVGG 136 (218)
T ss_pred ----------HHHhhEEEecCCccc------CcCCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHH-HHhhhhhh
Confidence 112223333221111 01112233322211 1111223345678899999999964 45789999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999999999999999999999999999999865 5799999999999999999999999999863
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=316.61 Aligned_cols=206 Identities=30% Similarity=0.382 Sum_probs=153.6
Q ss_pred EEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 167 TIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 167 ~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~------ 72 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKE------ 72 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHH------
Confidence 36899999987 8899999999999999999999999999999999998654 4566777666543221111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
++..++++.+.... ......+.+++.... ............++.++++.+|+.. ..++++.+||||
T Consensus 73 -------~~~~i~~~~q~~~~-----~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG 138 (211)
T cd03225 73 -------LRRKVGLVFQNPDD-----QFFGPTVEEEVAFGL-ENLGLPEEEIEERVEEALELVGLEG-LRDRSPFTLSGG 138 (211)
T ss_pred -------HHhhceEEecChhh-----hcCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCcHh-hhcCCcccCCHH
Confidence 12223333221100 000112222221111 1111122334567889999999974 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 139 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999765 4699999999999999999999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=317.69 Aligned_cols=213 Identities=25% Similarity=0.379 Sum_probs=160.1
Q ss_pred eEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 166 ITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 166 I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
|+++||++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+.++.... .
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~-~------ 71 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDR-K------ 71 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccch-H------
Confidence 578999999987 7899999999999999999999999999999999998655 4566766665442210 0
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
.++..++++.+.... .....+.+++... .............++.++++.+|+.. ..++++.+|||
T Consensus 72 -------~~~~~i~~v~q~~~~------~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~ 136 (220)
T cd03263 72 -------AARQSLGYCPQFDAL------FDELTVREHLRFY-ARLKGLPKSEIKEEVELLLRVLGLTD-KANKRARTLSG 136 (220)
T ss_pred -------HHhhhEEEecCcCCc------cccCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCHH-HHhChhhhCCH
Confidence 112223333221110 0011222222211 11111222334567889999999964 45788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
||||||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||++||+++++..+||+|++|++|+++. .|+
T Consensus 137 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~ 215 (220)
T cd03263 137 GMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGS 215 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCC
Confidence 9999999999999999999999999999999999999999876 3699999999999999999999999999974 455
Q ss_pred hh
Q 048654 402 FD 403 (723)
Q Consensus 402 ~~ 403 (723)
.+
T Consensus 216 ~~ 217 (220)
T cd03263 216 PQ 217 (220)
T ss_pred HH
Confidence 43
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=325.61 Aligned_cols=224 Identities=23% Similarity=0.362 Sum_probs=164.1
Q ss_pred ceEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC
Q 048654 165 DITIDNFSVAAR---------GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD 235 (723)
Q Consensus 165 ~I~l~nls~~y~---------~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~ 235 (723)
+|+++||++.|+ ++++|+|+||+|++|++++|+|+|||||||||++|+|+..| ..|+|.+.+..+....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEccccC
Confidence 489999999995 36899999999999999999999999999999999998754 4567777665543221
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccC
Q 048654 236 RSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
... ...++..++++.+..... ......+.+.+.........+.......++.++++.+|+.....+
T Consensus 80 ~~~----------~~~~~~~i~~v~q~~~~~----~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 145 (265)
T TIGR02769 80 RKQ----------RRAFRRDVQLVFQDSPSA----VNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145 (265)
T ss_pred HHH----------HHHHhhceEEEecChhhh----cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 110 011122233332211000 000112222222211111112223445678899999999644557
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|+
T Consensus 146 ~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~ 225 (265)
T TIGR02769 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD 225 (265)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe
Confidence 899999999999999999999999999999999999999999998888754 6799999999999999999999999
Q ss_pred CCEEEEecCChhhH
Q 048654 392 DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 ~G~i~~~~g~~~~~ 405 (723)
+|+++ +.|+.+++
T Consensus 226 ~G~i~-~~g~~~~~ 238 (265)
T TIGR02769 226 KGQIV-EECDVAQL 238 (265)
T ss_pred CCEEE-EECCHHHH
Confidence 99996 45776554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=319.61 Aligned_cols=223 Identities=23% Similarity=0.351 Sum_probs=165.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC-hHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD-RSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~-~~~~~~~~ 243 (723)
+|+++|+++.|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+.++.... ...
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~----- 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSD----- 74 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccccch-----
Confidence 58999999999989999999999999999999999999999999999998654 5667777666542110 000
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
.....++..++++.+.... .....+.+++......+..........++.++++.+|+.. ..++.+.+|||
T Consensus 75 ---~~~~~~~~~i~~~~q~~~~------~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~ 144 (242)
T PRK11124 75 ---KAIRELRRNVGMVFQQYNL------WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-YADRFPLHLSG 144 (242)
T ss_pred ---hhHHHHHhheEEEecCccc------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCH
Confidence 0011122333433322111 0111223332211111111222334567889999999964 45789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++ +.|
T Consensus 145 G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~ 223 (242)
T PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQG 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeC
Confidence 9999999999999999999999999999999999999999864 579999999999999999999999999996 457
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 224 ~~~~~ 228 (242)
T PRK11124 224 DASCF 228 (242)
T ss_pred CHHHh
Confidence 76655
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=322.09 Aligned_cols=206 Identities=27% Similarity=0.370 Sum_probs=163.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
.++|+++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 3 KVMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred ccEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 358999999999975 35899999999999999999999999999999999999999999987663 1
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhC-CCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF-GLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
.++|++|... ..+++.++.... ...... ......+..+++.+ ++.... ..++.+|||||||||+|||||+.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~--~~~~~~--~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMG--GFFAER--DQFQERIKWVYELFPRLHERR-IQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHh--hhccCh--hHHHHHHHHHHHHHHHHHHHH-hCchhhCCHHHHHHHHHHHHHHhC
Confidence 3889988642 112232221110 011110 01223456677777 465433 356789999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+||||||||+|||+.++..+.++|+++ +.|||++|||++++.++|| ++++|++|+++ +.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~-~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLAD-----RGYVLENGHVV-LEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCC-----EEEEEeCCEEE-eeCCHHHHhc
Confidence 9999999999999999999999999876 3699999999999999995 99999999997 4688887753
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=329.32 Aligned_cols=204 Identities=26% Similarity=0.321 Sum_probs=163.3
Q ss_pred EEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------ee
Q 048654 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------------LR 561 (723)
Q Consensus 497 ~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------------~~ 561 (723)
.+.|+++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 567999999763 5899999999999999999999999999999999999999999987652 24
Q ss_pred EEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
++|++|... ..+++.++... ..... ..........+.++++.+||.... ++++.+|||||||||+|||||+.+|+
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv~lAral~~~p~ 180 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAF-GLEVQ-GVPRAEREERAAEALELVGLEGWE-HKYPDELSGGMQQRVGLARALAVDPD 180 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHH-HHHhc-CCCHHHHHHHHHHHHHHcCCHhHh-hCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 889998642 22333333211 11111 110001234577899999997544 46679999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.+
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~~ 250 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD-----RIAIMKDGRLVQ-VGTPEEILT 250 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC-----EEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999876 3689999999999999995 999999999975 577776643
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=333.86 Aligned_cols=230 Identities=20% Similarity=0.292 Sum_probs=169.1
Q ss_pred CccceEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC-CCcEEEEEeeeeecCCCh
Q 048654 162 NVKDITIDNFSVAAR----GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV-PKNIDVLLVEQEVVGDDR 236 (723)
Q Consensus 162 ~~~~I~l~nls~~y~----~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~-~~~~~i~~~~q~~~~~~~ 236 (723)
...+|+++||++.|+ ...+|+||||+|++||++||+|+||||||||+++|+|+..+. ...|+|.+.+.++.....
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 345799999999994 357999999999999999999999999999999999987542 126788887776643322
Q ss_pred HHHHHHHHhhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc--cc
Q 048654 237 SAIQAVVSAHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK--EM 313 (723)
Q Consensus 237 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~ 313 (723)
..+ ..++ ..++++.+.... .......+.+.+.+...........+...++.++|+.+||.. ..
T Consensus 89 ~~~----------~~~r~~~i~~v~Q~~~~----~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~ 154 (330)
T PRK09473 89 KEL----------NKLRAEQISMIFQDPMT----SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKR 154 (330)
T ss_pred HHH----------HHHhcCCEEEEEcCchh----hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHH
Confidence 111 1111 123333221100 000111223333222211111233445678899999999964 22
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
.++++.+|||||+|||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++..+||+|++
T Consensus 155 ~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~v 234 (330)
T PRK09473 155 MKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLV 234 (330)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 46799999999999999999999999999999999999999999999888754 67999999999999999999999
Q ss_pred EeCCEEEEecCChhhHH
Q 048654 390 LHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~~ 406 (723)
|++|+|+. .|+.+++.
T Consensus 235 m~~G~ive-~g~~~~i~ 250 (330)
T PRK09473 235 MYAGRTME-YGNARDVF 250 (330)
T ss_pred EECCEEEE-ECCHHHHH
Confidence 99999975 47766653
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=331.65 Aligned_cols=233 Identities=21% Similarity=0.294 Sum_probs=165.6
Q ss_pred ceEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCCh--H
Q 048654 165 DITIDNFSVAARGK-----ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR--S 237 (723)
Q Consensus 165 ~I~l~nls~~y~~~-----~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~--~ 237 (723)
.|+++|++++|++. ++|+||||+|.+|++++|+|+||||||||+++|+|+..|. .|+|.+.+........ +
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEeceeccccccccc
Confidence 48999999999753 5999999999999999999999999999999999987654 4566554432210000 0
Q ss_pred H---HHHH-HH-----hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 048654 238 A---IQAV-VS-----AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLG 308 (723)
Q Consensus 238 ~---~~~~-~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lg 308 (723)
. +..+ +. .......++..++++.+.... ......+.+++...... .........+++.++++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~-----~l~~~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~g 153 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY-----QLFEQTIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVG 153 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCccc-----ccccccHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcC
Confidence 0 0000 00 000111223344444332100 00011233333221111 12233455678999999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCC
Q 048654 309 FTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 309 l~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad 385 (723)
|.....++++.+|||||||||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++..+||
T Consensus 154 L~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 154 LDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred CChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCC
Confidence 9644568999999999999999999999999999999999999999999999988765 6799999999999999999
Q ss_pred EEEEEeCCEEEEecCChhhHH
Q 048654 386 EIIHLHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 386 ~Ii~L~~G~i~~~~g~~~~~~ 406 (723)
||++|++|+++. .|+.+++.
T Consensus 234 rv~vl~~G~i~~-~g~~~~~~ 253 (305)
T PRK13651 234 RTIFFKDGKIIK-DGDTYDIL 253 (305)
T ss_pred EEEEEECCEEEE-ECCHHHHh
Confidence 999999999964 57766653
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=327.31 Aligned_cols=218 Identities=26% Similarity=0.350 Sum_probs=163.8
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++|+++.|+ +.++|+|+||+|.+|++++|+|+||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~----- 76 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVNAENEKW----- 76 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHH-----
Confidence 589999999996 57899999999999999999999999999999999998654 5667777666543221111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
++..++++.+.... ......+.+++..... ...+.......++.++++.+|+. ...++++.+|||
T Consensus 77 --------~~~~i~~v~q~~~~-----~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSg 141 (274)
T PRK13647 77 --------VRSKVGLVFQDPDD-----QVFSSTVWDDVAFGPV-NMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSY 141 (274)
T ss_pred --------HHhhEEEEecChhh-----hhccCcHHHHHHhhHH-HcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCH
Confidence 11222222221000 0001122233321111 11122334456788999999996 445799999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~g 220 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA-EG 220 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EC
Confidence 9999999999999999999999999999999999999999765 5799999999999999999999999999974 46
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+.+
T Consensus 221 ~~~~~ 225 (274)
T PRK13647 221 DKSLL 225 (274)
T ss_pred CHHHh
Confidence 66544
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=342.21 Aligned_cols=192 Identities=28% Similarity=0.382 Sum_probs=155.4
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------eeEEEEccccc--ccc
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------------LRIGRYSQHFV--DLL 573 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------------~~ig~~~q~~~--~~~ 573 (723)
.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|++++. ..++|++|.+. ..+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 3799999999999999999999999999999999999999999988652 25899999742 223
Q ss_pred CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHH
Q 048654 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653 (723)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~ 653 (723)
++.++... ...... .......+.+.++|+.+||.... ++++.+|||||||||+|||||+.+|+||||||||++||+.
T Consensus 122 Tv~enl~~-~~~~~~-~~~~~~~~~~~e~L~~~gL~~~~-~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 122 TVLDNTAF-GMELAG-INAEERREKALDALRQVGLENYA-HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CHHHHHHH-HHHhcC-CCHHHHHHHHHHHHHHcCCChhh-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 44444221 111111 00001234678899999997654 4667999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 654 SIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 654 s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
++..+.+.|.++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 199 ~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~D-----ri~vL~~G~i~~-~g~~~~l~~ 254 (400)
T PRK10070 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGD-----RIAIMQNGEVVQ-VGTPDEILN 254 (400)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCC-----EEEEEECCEEEe-cCCHHHHHh
Confidence 999999999775 3589999999999999995 999999999974 578777643
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=318.98 Aligned_cols=207 Identities=27% Similarity=0.440 Sum_probs=157.6
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|+++.|+++++|+|+||+|++| +++|+||||||||||+++|+|+..| .+|+|.+.+.++.... .
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~-~-------- 68 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQP-Q-------- 68 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccccch-H--------
Confidence 57899999999889999999999999 9999999999999999999998654 4566776665442111 0
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.++..++++.+.... .....+.+++.... .+..........++.++++.+|+.. ..++++.+|||||
T Consensus 69 -----~~~~~i~~~~q~~~~------~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 135 (211)
T cd03264 69 -----KLRRRIGYLPQEFGV------YPNFTVREFLDYIA-WLKGIPSKEVKARVDEVLELVNLGD-RAKKKIGSLSGGM 135 (211)
T ss_pred -----HHHhheEEecCCCcc------cccCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCCHH-HHhCchhhCCHHH
Confidence 112233333221110 01112223322211 1111222334567889999999974 4478999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 136 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 136 RRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999876 5799999999999999999999999999863
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=319.56 Aligned_cols=217 Identities=23% Similarity=0.327 Sum_probs=161.2
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++||++.|+++.+|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|+|.+.+..+........
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~------ 72 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMHKR------ 72 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccCCHhHH------
Confidence 5789999999999999999999999999999999999999999999998654 45667666654432111100
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.+..++++.+.... .....+.+++..... ...........++.++++.+|+.. ..++++.+|||||
T Consensus 73 ------~~~~i~~~~q~~~~------~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 138 (232)
T cd03218 73 ------ARLGIGYLPQEASI------FRKLTVEENILAVLE-IRGLSKKEREEKLEELLEEFHITH-LRKSKASSLSGGE 138 (232)
T ss_pred ------HhccEEEecCCccc------cccCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHH
Confidence 01112222211100 011122233322111 111122334567889999999974 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCCh
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNF 402 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~ 402 (723)
||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|+.
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~ 217 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTP 217 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCH
Confidence 99999999999999999999999999999999999988754 579999999999999999999999999996 45666
Q ss_pred hhH
Q 048654 403 DDF 405 (723)
Q Consensus 403 ~~~ 405 (723)
+++
T Consensus 218 ~~~ 220 (232)
T cd03218 218 EEI 220 (232)
T ss_pred HHh
Confidence 554
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=316.57 Aligned_cols=200 Identities=28% Similarity=0.422 Sum_probs=151.4
Q ss_pred EEeEEEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhh
Q 048654 168 IDNFSVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAH 246 (723)
Q Consensus 168 l~nls~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 246 (723)
++|++++|++ +++|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|.|.+.+..+.. .
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~---~--------- 67 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKA---K--------- 67 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhh---H---------
Confidence 6799999988 8999999999999999999999999999999999998654 55667666554321 0
Q ss_pred HHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHH
Q 048654 247 EELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWR 326 (723)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 326 (723)
..+..++++.+.... ......+.+++.... .... ....++.++++.+|+.. ..++++.+||||||
T Consensus 68 ----~~~~~i~~~~q~~~~-----~~~~~tv~e~l~~~~---~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~ 132 (205)
T cd03226 68 ----ERRKSIGYVMQDVDY-----QLFTDSVREELLLGL---KELD--AGNEQAETVLKDLDLYA-LKERHPLSLSGGQK 132 (205)
T ss_pred ----HhhcceEEEecChhh-----hhhhccHHHHHhhhh---hhcC--ccHHHHHHHHHHcCCch-hcCCCchhCCHHHH
Confidence 011122222211000 000011222221111 1111 12357889999999974 45789999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 327 MRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 327 QRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++
T Consensus 133 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 133 QRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999999865 579999999999999999999999999873
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=321.99 Aligned_cols=223 Identities=22% Similarity=0.284 Sum_probs=165.9
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC--C-CCCcEEEEEeeeeecCCChHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI--P-VPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~--~-~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.+.|+++|++++|+++++|+|+||+|.+|++++|+|||||||||||++|+|+.. + .|..|+|.+.++++......
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~-- 81 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD-- 81 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC--
Confidence 356999999999998899999999999999999999999999999999999853 1 24678888777655321100
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCc---cccC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTK---EMQG 315 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~ 315 (723)
...++..++++.+.... . ...+.+++..... .... .......++.++++.+|+.. ...+
T Consensus 82 ---------~~~~~~~i~~v~q~~~~------~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14242 82 ---------VVELRRRVGMVFQKPNP------F-PKSIFENVAYGLR-VNGVKDKAYLAERVERSLRHAALWDEVKDRLH 144 (253)
T ss_pred ---------HHHHhhcEEEEecCCCC------C-cCcHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCchhhhHHhh
Confidence 00122233333322111 0 1122333322111 1111 12234567888999999842 2346
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999999876 469999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .|+.+++
T Consensus 225 ~i~~-~g~~~~~ 235 (253)
T PRK14242 225 KLIE-VGPTEQI 235 (253)
T ss_pred EEEE-eCCHHHH
Confidence 9964 4666554
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=322.70 Aligned_cols=206 Identities=24% Similarity=0.334 Sum_probs=161.0
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CCCcceEEECCc------------ee
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL--SPTEGEVRRSQK------------LR 561 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~--~p~~G~I~~~~~------------~~ 561 (723)
|+++||++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+++. ..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 468999999975 35899999999999999999999999999999999995 799999988763 12
Q ss_pred EEEEccccc--cccCccccHHHHHHhhCCCC-----CC-CcHHHHHHHHHHhCCCCCCCCcCCCC-CCCHHHHHHHHHHH
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRLHPDQ-----EG-LSKQEAVRAKLGKFGLPSHNHLTPIA-KLSGGQKARVVFTS 632 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~L~~~gl~~~~~~~~i~-~LSGGqkqRv~lAr 632 (723)
++|++|.+. ..+++.++... ........ .. ....+.+..+++.+||......+++. .|||||||||+|||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRS-ALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred eEeeeccccccCCcCHHHHHHH-HHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 788888742 22223222211 11111000 00 01134577899999997433345565 59999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHh-cCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRV-CDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~-~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
+|+.+|+||||||||++||+.++..+.++|.++. .|||+||||++++..+ || ++++|++|+++ ..|++++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d-----~i~~l~~G~i~-~~g~~~~ 231 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPD-----YVHVLLDGRIV-KSGDVEL 231 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCC-----eEEEEeCCEEE-EecCHHH
Confidence 9999999999999999999999999999998873 6899999999999988 74 99999999997 4678776
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
+.
T Consensus 232 ~~ 233 (243)
T TIGR01978 232 AK 233 (243)
T ss_pred hc
Confidence 54
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=323.33 Aligned_cols=209 Identities=28% Similarity=0.318 Sum_probs=166.0
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc---------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK--------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~--------- 559 (723)
++|+++||++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 2 NKIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred ceEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 368999999999753 589999999999999999999999999999999999974 7999988763
Q ss_pred --eeEEEEccccc--cccCccccHHHHHHhhCCCCCC-CcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHHH
Q 048654 560 --LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEG-LSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 --~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|... ...++.++.... ......... ....+.+.++++.+|+.. ...++++.+|||||||||+||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALG-LKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHH-HHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 25899999742 223343332211 111110000 012345778999999853 123467799999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| +|++|++|+++. .|+++++
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~ 232 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISD-----YVAFLYKGQIVE-WGPTREV 232 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC-----EEEEEECCeEEE-ECCHHHH
Confidence 99999999999999999999999999999998874 689999999999999995 999999999974 5888776
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
..
T Consensus 233 ~~ 234 (250)
T PRK14247 233 FT 234 (250)
T ss_pred Hc
Confidence 43
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=322.38 Aligned_cols=206 Identities=22% Similarity=0.303 Sum_probs=164.7
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC----CcceEEECCc---------e
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP----TEGEVRRSQK---------L 560 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p----~~G~I~~~~~---------~ 560 (723)
.+|+++||+++| + ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+++. .
T Consensus 3 ~~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 3 QQIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred cEEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 378999999999 3 3589999999999999999999999999999999999999 9999988763 2
Q ss_pred eEEEEccccccccCccccHHHHH---HhhCCCCCCCcHHHHHHHHHHhCCCCCC--CCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 561 RIGRYSQHFVDLLTMEETPVSYL---LRLHPDQEGLSKQEAVRAKLGKFGLPSH--NHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 561 ~ig~~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~gl~~~--~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
.++|++|.....+....+..... ...... ....+.+.++++.++|... ...+++.+|||||||||+|||||+
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~ 156 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGK---PADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL 156 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCC---ChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh
Confidence 48999997421111111211111 111111 0133567889999999752 224677999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ++++|++|+++. .|+++++..
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d-----~v~~l~~G~i~~-~~~~~~~~~ 230 (254)
T PRK10418 157 CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLAD-----DVAVMSHGRIVE-QGDVETLFN 230 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-ecCHHHHhh
Confidence 999999999999999999999999999875 3589999999999999995 999999999974 577777643
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=322.13 Aligned_cols=223 Identities=22% Similarity=0.294 Sum_probs=165.7
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.++|+++|+++.|+++++|+|+||+|++|+++||+|+||||||||+++|+|+..+. |..|+|.+.++.+......
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~-- 87 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD-- 87 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch--
Confidence 44799999999999889999999999999999999999999999999999987542 4678888776654321100
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC---ccccCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT---KEMQGR 316 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~ 316 (723)
...++..++++.+.... . ...+.+++..... ...........++.++++.+|+. ....++
T Consensus 88 ---------~~~~~~~i~~v~q~~~~------~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 88 ---------VVELRKNVGMVFQKPNP------F-PMSIYDNVAYGPR-IHGANKKDLDGVVENALRSAALWDETSDRLKS 150 (258)
T ss_pred ---------HHHHhhhEEEEecCCcc------C-cccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcC
Confidence 00112223333221110 0 1122233321111 11122223345688899999883 133478
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 151 ~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 230 (258)
T PRK14268 151 PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGE 230 (258)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999865 4799999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|..+++
T Consensus 231 i~~-~~~~~~~ 240 (258)
T PRK14268 231 LIE-FGQTRQI 240 (258)
T ss_pred EEE-eCCHHHH
Confidence 964 4666554
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=323.35 Aligned_cols=209 Identities=24% Similarity=0.339 Sum_probs=164.7
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~-------- 559 (723)
.++|+++|+++.|++. .+|+||||+|.+||+++|+|+||||||||+++|+|+++| ++|+|++++.
T Consensus 5 ~~~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 5 EAIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred CceEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 4589999999999753 589999999999999999999999999999999999997 4899987652
Q ss_pred -----eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|.... ..++.++.... .............+.+..+++.+++.. ...++++.+|||||||||+|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYG-PKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 248899987421 12333332111 111110000012345677888888731 12345679999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||+|+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| ||++|++|+++. .|++++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~ 235 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISD-----RTAFFLNGCIEE-ESSTDE 235 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999998874 689999999999999995 999999999974 578877
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
+.
T Consensus 236 ~~ 237 (254)
T PRK14273 236 LF 237 (254)
T ss_pred HH
Confidence 64
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=327.76 Aligned_cols=223 Identities=22% Similarity=0.273 Sum_probs=164.3
Q ss_pred ceEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC-hHH
Q 048654 165 DITIDNFSVAARG-----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD-RSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~-----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~-~~~ 238 (723)
.|+++|+++.|++ +++|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|+|.+.+..+.... ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccch
Confidence 5889999999974 4799999999999999999999999999999999998755 5667777666543210 000
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
....+..++++.+.... ......+.+++.... ............++.++++.+|+.....++++
T Consensus 80 ----------~~~~~~~ig~v~q~~~~-----~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (287)
T PRK13641 80 ----------LKKLRKKVSLVFQFPEA-----QLFENTVLKDVEFGP-KNFGFSEDEAKEKALKWLKKVGLSEDLISKSP 143 (287)
T ss_pred ----------HHHHHhceEEEEeChhh-----hhccchHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc
Confidence 00111222332221100 000112223322111 11112234455678999999999634557999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 57999999999999999999999999999
Q ss_pred EEecCChhhHH
Q 048654 396 HFYRGNFDDFE 406 (723)
Q Consensus 396 ~~~~g~~~~~~ 406 (723)
+. .|+.+++.
T Consensus 224 ~~-~g~~~~~~ 233 (287)
T PRK13641 224 IK-HASPKEIF 233 (287)
T ss_pred EE-eCCHHHHh
Confidence 64 57766553
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=321.06 Aligned_cols=219 Identities=21% Similarity=0.342 Sum_probs=162.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~------ 74 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDISLLPLHA------ 74 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHH------
Confidence 58999999999999999999999999999999999999999999999998654 4566666665543221110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
..+..++++.+.... .....+.+++.................++.++++.+|+.. ..++++.+||||
T Consensus 75 ------~~~~~i~~~~q~~~~------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G 141 (241)
T PRK10895 75 ------RARRGIGYLPQEASI------FRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGG 141 (241)
T ss_pred ------HHHhCeEEeccCCcc------cccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-HhhcchhhCCHH
Confidence 011122222221100 0011222222211100001112334567889999999964 457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||++||+++++..+||+|++|++|+++. .|+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~ 220 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGT 220 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCC
Confidence 999999999999999999999999999999999988888653 6799999999999999999999999999964 577
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
++++
T Consensus 221 ~~~~ 224 (241)
T PRK10895 221 PTEI 224 (241)
T ss_pred HHHH
Confidence 6655
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=325.14 Aligned_cols=209 Identities=24% Similarity=0.334 Sum_probs=164.2
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~------- 559 (723)
+.++|+++|+++.|++ ..+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 18 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 18 KEHILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CCceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 4578999999999975 358999999999999999999999999999999999864 78999987652
Q ss_pred ------eeEEEEccccccccCccccHHHHHH---hhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHH
Q 048654 560 ------LRIGRYSQHFVDLLTMEETPVSYLL---RLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKAR 627 (723)
Q Consensus 560 ------~~ig~~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqR 627 (723)
..++|++|.... +. .+....+. ..............+..++..+++.. ....+++.+||||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred cHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 248899987421 11 12222221 11111000011244677888888842 12246779999999999
Q ss_pred HHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCC
Q 048654 628 VVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705 (723)
Q Consensus 628 v~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~ 705 (723)
|+|||||+.+|+||||||||+|||+.++..+.++|+++. .|||++|||++++..+|| +|++|++|+++. .|+
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d-----~v~~l~~G~i~~-~~~ 246 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSD-----RTAFFLNGDLVE-YDQ 246 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCC-----EEEEEECCEEEE-eCC
Confidence 999999999999999999999999999999999998874 689999999999999995 999999999975 577
Q ss_pred HHHHHH
Q 048654 706 FEEYKE 711 (723)
Q Consensus 706 ~~~~~~ 711 (723)
++++..
T Consensus 247 ~~~~~~ 252 (268)
T PRK14248 247 TEQIFT 252 (268)
T ss_pred HHHHHh
Confidence 776643
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=324.07 Aligned_cols=205 Identities=22% Similarity=0.349 Sum_probs=162.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------------
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------------- 559 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------------- 559 (723)
|+++||++.|++ ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 468999999975 35899999999999999999999999999999999999999999987652
Q ss_pred --------eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHH
Q 048654 560 --------LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 560 --------~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~ 629 (723)
..++|++|... ...++.++......... ..........+.++++.+|+.... ++.+.+|||||+|||+
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL-GMARAEAEKRAMELLDMVGLADKA-DHMPAQLSGGQQQRVA 156 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhHh-hcChhhcCHHHHHHHH
Confidence 24788888642 12233333211100000 000001234577899999997544 4567899999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCC
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~ 705 (723)
|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ++++|++|+++. .|+
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d-----~i~~l~~G~i~~-~g~ 230 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFAD-----RVCFFDKGRIVE-QGK 230 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC-----EEEEEECCEEEE-eCC
Confidence 999999999999999999999999999999999875 4589999999999999995 999999999974 577
Q ss_pred HHHHH
Q 048654 706 FEEYK 710 (723)
Q Consensus 706 ~~~~~ 710 (723)
.+++.
T Consensus 231 ~~~~~ 235 (252)
T TIGR03005 231 PDEIF 235 (252)
T ss_pred HHHHh
Confidence 77664
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=326.18 Aligned_cols=210 Identities=27% Similarity=0.343 Sum_probs=165.7
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------e
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------L 560 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~ 560 (723)
.+++|+++|+++.|++....+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 4 ~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred CCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 35689999999999753335899999999999999999999999999999999999999999998763 2
Q ss_pred eEEEEccccc---cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 561 RIGRYSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 561 ~ig~~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
.++|++|+.. ...++.++. .+..... ..........+..+++.+++.+.. ++++.+|||||||||+|||||+.+
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDV-AFGLENH-AVPYDEMHRRVSEALKQVDMLERA-DYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred heeEEEeChHHhcccccHHHHH-HhhHHhc-CCCHHHHHHHHHHHHHHcCCchhh-hCCcccCCHHHHHHHHHHHHHHcC
Confidence 4789998742 111222221 1111111 000001224577889999997544 456789999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++.. | |+|++|++|+|+. .|+++++.+
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~-----d~i~~l~~G~i~~-~g~~~~~~~ 231 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-A-----DHVIVMNKGTVYK-EGTPTEIFD 231 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-C-----CEEEEEECCEEEE-ecCHHHHhc
Confidence 9999999999999999999999999875 3589999999999974 7 4999999999974 578777643
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=331.00 Aligned_cols=208 Identities=25% Similarity=0.429 Sum_probs=158.4
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHH
Q 048654 173 VAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKL 252 (723)
Q Consensus 173 ~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l 252 (723)
++|+++++|+|+||+|++|+++||+||||||||||+++|+|+..| ..|+|.+.+..+... .. .+
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~-~~-------------~~ 64 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVRE-PR-------------KV 64 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccC-HH-------------HH
Confidence 468888999999999999999999999999999999999998654 566777766654321 11 11
Q ss_pred HHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHH
Q 048654 253 REEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLA 332 (723)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLA 332 (723)
+..++++.+.... .....+.+.+.. ...+..........++.++|+.+|+.. ..++++.+|||||||||+||
T Consensus 65 ~~~i~~~~q~~~~------~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la 136 (302)
T TIGR01188 65 RRSIGIVPQYASV------DEDLTGRENLEM-MGRLYGLPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIA 136 (302)
T ss_pred HhhcEEecCCCCC------CCCCcHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHH
Confidence 2334444322111 111123333322 111222223345567899999999974 45799999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChhhH
Q 048654 333 RALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 333 rAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~~~ 405 (723)
|||+.+|++|||||||+|||+.++.++.++|+++ +.|||++||+++++..+||+|++|++|+++. .|+.+++
T Consensus 137 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~l 211 (302)
T TIGR01188 137 ASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTPEEL 211 (302)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999999999865 5799999999999999999999999999974 5776554
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=317.49 Aligned_cols=216 Identities=26% Similarity=0.365 Sum_probs=154.7
Q ss_pred ceEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARGK----ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~~----~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++||+++|+++ ++|+|+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.+..+.......
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~-- 76 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLLKLSRRL-- 76 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccchhh--
Confidence 37899999999865 899999999999999999999999999999999998755 4566766665543221100
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc-hHHHHH-HHHHHHhCCCCccccCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS-DAAEAQ-ASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~~~L~~lgl~~~~~~~~~ 318 (723)
...++..++++.+..... ......+.+++..... ...... ...... +.++++.+++.....++++
T Consensus 77 --------~~~~~~~i~~~~q~~~~~----~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 77 --------RKIRRKEIQMVFQDPMSS----LNPRMTIGEQIAEPLR-IHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred --------HHHhhccEEEEecCchhh----cCCcCCHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc
Confidence 001122223322211000 0001122222221111 111111 111222 3588999999534457899
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 144 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 144 HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGK 223 (228)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCE
Confidence 999999999999999999999999999999999999999999999764 5799999999999999999999999999
Q ss_pred EEE
Q 048654 395 LHF 397 (723)
Q Consensus 395 i~~ 397 (723)
++.
T Consensus 224 i~~ 226 (228)
T cd03257 224 IVE 226 (228)
T ss_pred EEe
Confidence 863
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=322.34 Aligned_cols=207 Identities=30% Similarity=0.405 Sum_probs=165.1
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~ig 563 (723)
+|+++|++++|++ ..+|++|||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.. .++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 6899999999975 358999999999999999999999999999999999999999999887631 389
Q ss_pred EEccccc--cccCccccHHHHHHh---hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 564 RYSQHFV--DLLTMEETPVSYLLR---LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 564 ~~~q~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
|++|... ..+++.++....... .+... .......+..+++.+|+.... ++++.+|||||+|||+|||||+.+|
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-SAEDNARVNQAMEQTRINHLA-DRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCC-CHHHHHHHHHHHHHcCCHHHH-cCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9998742 112222221100000 01100 011234577889999997544 4677999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
++|||||||+|||+.++..+.++|.++ +.|||+||||++++.++|| ++++|++|+++. .|+++++..
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~~ 227 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCD-----HLVVLANGHVMA-QGTPEEVMT 227 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcC-----EEEEEECCeEEE-EcCHHHhcC
Confidence 999999999999999999999999876 3689999999999999995 999999999974 577777643
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=325.62 Aligned_cols=220 Identities=23% Similarity=0.275 Sum_probs=162.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|+|.+.+..+.......
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~------ 72 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLDYSKRGL------ 72 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcccccCCH------
Confidence 48899999999988999999999999999999999999999999999998654 4567777666542111100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
..++..++++.+.... ......+.+++..... ...........++.++++.+|+.. ..++++.+||||
T Consensus 73 -----~~~~~~i~~v~q~~~~-----~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG 140 (271)
T PRK13638 73 -----LALRQQVATVFQDPEQ-----QIFYTDIDSDIAFSLR-NLGVPEAEITRRVDEALTLVDAQH-FRHQPIQCLSHG 140 (271)
T ss_pred -----HHHHhheEEEeeChhh-----ccccccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCHh-HhcCCchhCCHH
Confidence 0111223332221000 0000011222211111 111122334456788999999964 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+
T Consensus 141 ~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~ 219 (271)
T PRK13638 141 QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT-HGA 219 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCC
Confidence 999999999999999999999999999999999999999865 5799999999999999999999999999974 476
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+++
T Consensus 220 ~~~~ 223 (271)
T PRK13638 220 PGEV 223 (271)
T ss_pred HHHH
Confidence 6554
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=315.13 Aligned_cols=204 Identities=29% Similarity=0.384 Sum_probs=154.4
Q ss_pred eEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 166 ITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 166 I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+.++....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~------ 72 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTGPG------ 72 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcccc------
Confidence 578999999987 7899999999999999999999999999999999998654 4566766665442110
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
..++++.+.... .....+.+++.... ............++.++++.+|+.+ ..++++.+|
T Consensus 73 ------------~~i~~v~q~~~~------~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 132 (220)
T cd03293 73 ------------PDRGYVFQQDAL------LPWLTVLDNVALGL-ELQGVPKAEARERAEELLELVGLSG-FENAYPHQL 132 (220)
T ss_pred ------------CcEEEEeccccc------ccCCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChh-hhhCCcccC
Confidence 011111111000 00111222222111 1111222334567889999999974 457889999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe--CCEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH--DQKL 395 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~--~G~i 395 (723)
||||||||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|+ +|++
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i 212 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRI 212 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEE
Confidence 999999999999999999999999999999999999999998754 5799999999999999999999999 7998
Q ss_pred EE
Q 048654 396 HF 397 (723)
Q Consensus 396 ~~ 397 (723)
+.
T Consensus 213 ~~ 214 (220)
T cd03293 213 VA 214 (220)
T ss_pred EE
Confidence 63
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=314.12 Aligned_cols=205 Identities=21% Similarity=0.385 Sum_probs=156.6
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|+++.|+++.+|+|+||+|.+|++++|+|||||||||||++|+|+..| .+|+|.+.+..+..
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~------------ 66 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI------------ 66 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH------------
Confidence 5789999999989999999999999999999999999999999999998654 56667665543210
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
..+..++++.+.... .....+.+++... .............++.++++.+|+.. ..++++.+|||||
T Consensus 67 -----~~~~~i~~~~q~~~~------~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 133 (210)
T cd03269 67 -----AARNRIGYLPEERGL------YPKMKVIDQLVYL-AQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGN 133 (210)
T ss_pred -----HHHccEEEeccCCcC------CcCCcHHHHHHHH-HHHcCCChHHHHHHHHHHHHHcCChH-HHhCcHhhCCHHH
Confidence 011122222221110 0111222332211 11111222344567889999999974 4578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 134 ~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 134 QQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999865 5799999999999999999999999999864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=326.33 Aligned_cols=208 Identities=28% Similarity=0.383 Sum_probs=165.1
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.++|+++|+++.|++....+|++|||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 4689999999999633346899999999999999999999999999999999999999999987652 24
Q ss_pred EEEEccccc---cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 562 IGRYSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 562 ig~~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
++|++|... ...++.++.... .... ..........+.++++.+||.... ++++.+|||||+|||+|||||+.+|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~-~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFG-LENK-KVPPKKMKDIIDDLAKKVGMEDYL-DKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhH-HHHc-CCCHHHHHHHHHHHHHHcCCHHHh-hCCcccCCHHHHHHHHHHHHHHcCC
Confidence 789998742 123333332111 1111 010001223477889999997544 4667999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+||||||||+|||+.++..+.++|+++. .|||+||||++++. +| |+|++|++|+++. .|+++++.
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~-----d~v~~l~~G~i~~-~g~~~~~~ 230 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LA-----DKVIVFSEGKLIA-QGKPKEIL 230 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hC-----CEEEEEECCEEEE-ecCHHHHh
Confidence 9999999999999999999999998762 58999999999986 78 4999999999974 57776654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=321.63 Aligned_cols=223 Identities=21% Similarity=0.327 Sum_probs=164.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+..|.| .+|.|.+.+.++.......
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~--- 80 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP--- 80 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh---
Confidence 5899999999998999999999999999999999999999999999999876532 5788887776543111000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cccCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQGRPT 318 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~ 318 (723)
..++..++++.+.... .....+.+++.................++.++++.+|+.. ...++++
T Consensus 81 --------~~~~~~i~~~~q~~~~------~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 146 (258)
T PRK14241 81 --------VAVRRTIGMVFQRPNP------FPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG 146 (258)
T ss_pred --------HHHhcceEEEcccccc------CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc
Confidence 0111222332221100 0111223333221111011112334567888999999841 3457889
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEe-----
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLH----- 391 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~----- 391 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|+
T Consensus 147 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~ 226 (258)
T PRK14241 147 GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATG 226 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCC
Confidence 999999999999999999999999999999999999999999999875 4799999999999999999999997
Q ss_pred -CCEEEEecCChhhH
Q 048654 392 -DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 -~G~i~~~~g~~~~~ 405 (723)
+|+++. .|+.+++
T Consensus 227 ~~g~i~~-~~~~~~~ 240 (258)
T PRK14241 227 KPGRLVE-IDDTEKI 240 (258)
T ss_pred CCceEEe-cCCHHHH
Confidence 799974 4776655
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=319.91 Aligned_cols=222 Identities=24% Similarity=0.289 Sum_probs=165.0
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|+++||++.|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..|. +..|+|.+.+.++.......
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~--- 80 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP--- 80 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh---
Confidence 589999999999889999999999999999999999999999999999987653 35788887776553110000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhCCCCc---cccCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL--GSDAAEAQASKILAGLGFTK---EMQGR 316 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~ 316 (723)
..++..++++.+.... .....+.+++..... .... .......++.++++.+|+.. ...++
T Consensus 81 --------~~~~~~i~~~~q~~~~------~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14267 81 --------IEVRREVGMVFQYPNP------FPHLTIYDNVAIGVK-LNGLVKSKKELDERVEWALKKAALWDEVKDRLND 145 (253)
T ss_pred --------HHHhhceeEEecCCcc------CCCCcHHHHHHHHHH-hcCccCCHHHHHHHHHHHHHHcCCccchhhhhcc
Confidence 0112223333221110 011122333322111 1111 12234456788999998742 23468
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 146 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 225 (253)
T PRK14267 146 YPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGK 225 (253)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999875 4799999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|+.+++
T Consensus 226 i~~-~~~~~~~ 235 (253)
T PRK14267 226 LIE-VGPTRKV 235 (253)
T ss_pred EEE-eCCHHHH
Confidence 974 4666554
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=323.95 Aligned_cols=208 Identities=27% Similarity=0.346 Sum_probs=166.9
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
..+|+++||+++|++. .+|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 5 VARLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred ccEEEEEEEEEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 3579999999999853 5899999999999999999999999999999999999999999998763 24
Q ss_pred EEEEccccccccCccccHHHHHHhh-CCC---C--CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRL-HPD---Q--EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~-~~~---~--~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
++|++|+..-. ...+....+... ... . ........+..+++.+||.... ++++.+|||||||||+|||||+
T Consensus 83 i~~v~q~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 83 IGLLAQNATTP--GDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-DQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred eEEeeccCcCC--CCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-cCCcccCChHHHHHHHHHHHHh
Confidence 89999974211 111222222110 010 0 0001234577899999997544 4678999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
.+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++..
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~~ 233 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYAS-----HLIALREGKIVA-QGAPKEIVT 233 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHhh
Confidence 999999999999999999999999999876 3589999999999999995 999999999974 578877643
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=314.45 Aligned_cols=210 Identities=27% Similarity=0.378 Sum_probs=155.2
Q ss_pred eEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 166 ITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 166 I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
|+++||++.|++ +++|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|+|.+.+.++.......
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~--- 76 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSNE--- 76 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcCHhH---
Confidence 789999999974 5799999999999999999999999999999999998755 4566766665543221110
Q ss_pred HHHhhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 242 VVSAHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 242 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
...++ ..++++.+.... .....+.+++.... .+..........++.++++.+|+.. ..++++.+
T Consensus 77 -------~~~~~~~~i~~v~q~~~~------~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 141 (221)
T TIGR02211 77 -------RAKLRNKKLGFIYQFHHL------LPDFTALENVAMPL-LIGKKSVKEAKERAYEMLEKVGLEH-RINHRPSE 141 (221)
T ss_pred -------HHHHHHhcEEEEeccccc------CCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhh
Confidence 00111 223333221111 00112223222111 1111222334567889999999974 45789999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.. ||+|++|++|+++
T Consensus 142 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999998754 5799999999999975 8999999999874
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=321.56 Aligned_cols=225 Identities=21% Similarity=0.268 Sum_probs=166.4
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeeecCCChHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~~~~~~~~ 238 (723)
....|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+..+ .|..|+|.+.+..+......
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~- 88 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD- 88 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc-
Confidence 34469999999999988999999999999999999999999999999999998652 14678888777655311100
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cccC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQG 315 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~ 315 (723)
...++..++++.+.... . ...+.+++.................++.++++.+|+.. ...+
T Consensus 89 ----------~~~~~~~i~~~~q~~~~------~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 89 ----------IALLRAKVGMVFQKPTP------F-PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred ----------hHHHhcceEEEecCCcc------C-cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHh
Confidence 01122233333221110 0 11222222211111111222334567889999999742 2346
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+++.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 231 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLG 231 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999999876 469999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .|+.+++
T Consensus 232 ~i~~-~g~~~~~ 242 (260)
T PRK10744 232 ELIE-FGNTDTI 242 (260)
T ss_pred EEEE-eCCHHHH
Confidence 9975 4666554
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=321.91 Aligned_cols=224 Identities=23% Similarity=0.286 Sum_probs=167.0
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeeecCCChHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~~~~~~~~ 238 (723)
....|+++||++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+..| .|..|+|.+.++.+......
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~- 94 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD- 94 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc-
Confidence 34469999999999999999999999999999999999999999999999998764 24678888777655321100
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhCCCCc---cc
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL--GSDAAEAQASKILAGLGFTK---EM 313 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~ 313 (723)
...++..++++.+.... . ...+.+++.... ..... .......++.++++.+|+.. ..
T Consensus 95 ----------~~~~~~~i~~v~q~~~~------~-~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 156 (267)
T PRK14235 95 ----------VVELRARVGMVFQKPNP------F-PKSIYENVAYGP-RIHGLARSKAELDEIVETSLRKAGLWEEVKDR 156 (267)
T ss_pred ----------hHHHhhceEEEecCCCC------C-CCcHHHHHHHHH-HhcccccchHHHHHHHHHHHHHcCCchhhhHH
Confidence 00122233333322111 0 012223332111 11111 12234567889999999953 23
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
.++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|+
T Consensus 157 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~ 236 (267)
T PRK14235 157 LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFH 236 (267)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEE
Confidence 46789999999999999999999999999999999999999999999999865 4699999999999999999999999
Q ss_pred CCEEEEecCChhhH
Q 048654 392 DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 ~G~i~~~~g~~~~~ 405 (723)
+|+++. .|+.+++
T Consensus 237 ~G~i~~-~g~~~~~ 249 (267)
T PRK14235 237 LGNLVE-VGDTEKM 249 (267)
T ss_pred CCEEEE-eCCHHHH
Confidence 999974 4666554
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=343.71 Aligned_cols=226 Identities=26% Similarity=0.343 Sum_probs=172.2
Q ss_pred CccceEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee
Q 048654 162 NVKDITIDNFSVAARG-----------KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~-----------~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~ 230 (723)
..+.++++||++.|.. ..+++||||+|.+||++||||+||||||||.|+|+|+..| ..|.|.+.+++
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~ 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQD 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcc
Confidence 4567889999999973 3689999999999999999999999999999999998765 56677777766
Q ss_pred ecCCChHHHHHHHHhhHHHHHHHHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q 048654 231 VVGDDRSAIQAVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGF 309 (723)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl 309 (723)
...... +...++..+.++ ++.... ......+.+.+.+...........+..+++.++|+.+|+
T Consensus 355 -~~~~~~----------~~~~~r~~~QmvFQdp~~S-----LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL 418 (539)
T COG1123 355 -LDLTGG----------ELRRLRRRIQMVFQDPYSS-----LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL 418 (539)
T ss_pred -cccccc----------hhhhhhhheEEEEeCcccc-----cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCC
Confidence 211111 111223333332 222111 122234444444433322222234556789999999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhCC
Q 048654 310 TKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 310 ~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~iad 385 (723)
.....++++++|||||||||+|||||+.+|+|||+||||++||+..+..+.++|.+ ++.|.||||||+.++..+||
T Consensus 419 ~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~d 498 (539)
T COG1123 419 PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIAD 498 (539)
T ss_pred CHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCc
Confidence 97777999999999999999999999999999999999999999999988888864 47899999999999999999
Q ss_pred EEEEEeCCEEEEecCChhhHH
Q 048654 386 EIIHLHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 386 ~Ii~L~~G~i~~~~g~~~~~~ 406 (723)
||++|++|+|+.. |+.+...
T Consensus 499 rv~vm~~G~iVE~-G~~~~v~ 518 (539)
T COG1123 499 RVAVMYDGRIVEE-GPTEKVF 518 (539)
T ss_pred eEEEEECCeEEEe-CCHHHHh
Confidence 9999999999865 6765543
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=327.05 Aligned_cols=205 Identities=28% Similarity=0.354 Sum_probs=162.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------eeE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LRI 562 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~i 562 (723)
||+++||++.|++. ..+|+||||+|++|++++|+|||||||||||++|+|+++|++|+|++++. ..+
T Consensus 1 ml~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 57899999999632 34899999999999999999999999999999999999999999987653 237
Q ss_pred EEEcccccc---ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 563 GRYSQHFVD---LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 563 g~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
+|++|.+.. ..++.++.. +....+ ........+.+..+++.+||.... ++++..|||||||||+|||||+.+|+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~-~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~laral~~~p~ 156 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLA-FGPENL-CLPPIEIRKRVDRALAEIGLEKYR-HRSPKTLSGGQGQCVALAGILTMEPE 156 (274)
T ss_pred EEEEEChhhhcccchHHHHHH-hhHHHc-CCCHHHHHHHHHHHHHHCCCHHHh-cCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899987421 123322221 111111 000001234577889999997544 46779999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||||||+|||+.++..+.++|+++ +.|||++|||++++. .| |+|++|++|+++. .|+++++.
T Consensus 157 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~-----d~v~~l~~G~i~~-~g~~~~~~ 223 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DA-----DRIIVMDRGKIVL-EGEPENVL 223 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hC-----CEEEEEECCEEEE-ECCHHHHh
Confidence 99999999999999999999999876 359999999999984 58 4999999999974 57777653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=322.63 Aligned_cols=209 Identities=24% Similarity=0.336 Sum_probs=164.9
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~------- 559 (723)
..++|+++|+++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 9 ~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 9 AQPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred cceeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 4568999999999975 3589999999999999999999999999999999999985 7999987552
Q ss_pred ------eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHH
Q 048654 560 ------LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 560 ------~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~ 629 (723)
..++|++|.... ..++.++.. +...... .........+..+++.+++.. ....+++.+|||||+|||+
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFPMSIYDNVA-YGPRIHG-ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred hHHHHhhhEEEEecCCccCcccHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 137899886421 123333321 1111111 100011235678899998842 2234677999999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++.++|| +|++|++|+|+. .|+++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~ 238 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISD-----YTGFFLMGELIE-FGQTR 238 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCC-----EEEEEECCEEEE-eCCHH
Confidence 9999999999999999999999999999999998874 689999999999999995 999999999974 57887
Q ss_pred HHH
Q 048654 708 EYK 710 (723)
Q Consensus 708 ~~~ 710 (723)
++.
T Consensus 239 ~~~ 241 (258)
T PRK14268 239 QIF 241 (258)
T ss_pred HHh
Confidence 764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=323.99 Aligned_cols=209 Identities=26% Similarity=0.393 Sum_probs=164.8
Q ss_pred CeEEEEEEEEEcCC-------CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------
Q 048654 494 PLLQLIEVSFSYPN-------REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~-------~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------- 559 (723)
++|+++||++.|++ ....+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47999999999973 1246899999999999999999999999999999999999999999987663
Q ss_pred -------eeEEEEccccccc----cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 560 -------LRIGRYSQHFVDL----LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 560 -------~~ig~~~q~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
..++|++|..... .++.++.... ...+...........+.++++.+|+......+++..|||||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREP-LRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 2488999874211 2222221111 111111100012345788999999964334467799999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCC
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPG 704 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g 704 (723)
+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++. .|
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d-----~i~~l~~G~i~~-~g 234 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQ-----RVMVMDNGQIVE-TQ 234 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCC-----EEEEEECCEEee-eC
Confidence 9999999999999999999999999999999998775 4589999999999999995 999999999974 57
Q ss_pred CHHHH
Q 048654 705 TFEEY 709 (723)
Q Consensus 705 ~~~~~ 709 (723)
+++++
T Consensus 235 ~~~~~ 239 (268)
T PRK10419 235 PVGDK 239 (268)
T ss_pred Chhhc
Confidence 76654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=322.54 Aligned_cols=207 Identities=32% Similarity=0.426 Sum_probs=165.0
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++|+++.|++. .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 5789999999753 5899999999999999999999999999999999999999999998763 14889
Q ss_pred Eccccc--cccCccccHHHHHHhhCC--CCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 565 YSQHFV--DLLTMEETPVSYLLRLHP--DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 565 ~~q~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
++|.+. ...++.++.......... ..........+.++++.+++.... ++++.+|||||+|||+|||||+.+|+|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~l 158 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-DRDMSTLSGGERQRVHVARALAQEPKL 158 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 998752 112233322110000000 000001234578899999997544 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+.+++..
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~~ 226 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD-----HVVVLDGGRVVA-AGPPREVLT 226 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEeCCCEEE-ecCHHHhhC
Confidence 9999999999999999999999887 3689999999999999995 999999999974 588877643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=336.46 Aligned_cols=218 Identities=24% Similarity=0.323 Sum_probs=167.3
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..+|+++|+++.|++.++|+|+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.+..+.....
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~------ 88 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPP------ 88 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCH------
Confidence 4469999999999998999999999999999999999999999999999998754 56677776665532111
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
.+..++++.+.... .....+.+++..... .......+...++.++++.+|+.+ ..++++.+||
T Consensus 89 ---------~~r~ig~vfQ~~~l------fp~ltv~eNi~~~l~-~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LS 151 (377)
T PRK11607 89 ---------YQRPINMMFQSYAL------FPHMTVEQNIAFGLK-QDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLS 151 (377)
T ss_pred ---------HHCCEEEEeCCCcc------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCC
Confidence 01122332221110 112233444433221 112233455678899999999974 5689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC----RWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~----~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++||+..+.++.+.|+ +.+.|+|+||||++++..+||+|++|++|+++.
T Consensus 152 gGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~- 230 (377)
T PRK11607 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ- 230 (377)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE-
Confidence 999999999999999999999999999999999988876654 347899999999999999999999999999975
Q ss_pred cCChhhHH
Q 048654 399 RGNFDDFE 406 (723)
Q Consensus 399 ~g~~~~~~ 406 (723)
.|+..++.
T Consensus 231 ~g~~~~~~ 238 (377)
T PRK11607 231 IGEPEEIY 238 (377)
T ss_pred EcCHHHHH
Confidence 47766553
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=321.56 Aligned_cols=208 Identities=28% Similarity=0.317 Sum_probs=164.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc---------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK--------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~--------- 559 (723)
++|+++||++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 3 FAIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred ceEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 479999999999753 589999999999999999999999999999999999987 4999987652
Q ss_pred ----eeEEEEccccc--cccCccccHHHHHHhhCCCC-CCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHH
Q 048654 560 ----LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQ-EGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 560 ----~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~ 629 (723)
..++|++|... ..+++.++.... ....... ........+..+++.+++.. ....+++.+|||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIG-VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHH-HHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 24789998642 223333332211 1111100 00011245678889998842 1234567899999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++. .|+++
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~ 233 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSD-----YVAFLYLGKLIE-VGPTR 233 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCC-----EEEEEECCEEEE-eCCHH
Confidence 9999999999999999999999999999999998874 689999999999999995 999999999974 57887
Q ss_pred HHH
Q 048654 708 EYK 710 (723)
Q Consensus 708 ~~~ 710 (723)
++.
T Consensus 234 ~~~ 236 (253)
T PRK14267 234 KVF 236 (253)
T ss_pred HHH
Confidence 764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=327.28 Aligned_cols=208 Identities=27% Similarity=0.402 Sum_probs=165.3
Q ss_pred CeEEEEEEEEEcCCC----cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------
Q 048654 494 PLLQLIEVSFSYPNR----EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~----~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------- 559 (723)
++|+++|++++|++. ...+|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 589999999999742 235899999999999999999999999999999999999999999987652
Q ss_pred --eeEEEEccccccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 560 --LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 560 --~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral 634 (723)
..++|++|.+...+. ..+....+ .+.....+.. ....+..+++.+||.... .+++.+|||||||||+|||||
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDV-AFGPENLGIPPEEIRERVDESLKKVGMYEYR-RHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHCCCHhHh-hCCcccCCHHHHHHHHHHHHH
Confidence 247899987421111 11222211 1111101111 234578899999997554 467799999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+.+|+||||||||+|||+.++..|.++|.++ +.|||+||||++++.. | |++++|++|+|+. .|+++++.
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~-----d~v~~l~~G~i~~-~g~~~~~~ 232 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-A-----DRIIVMDSGKVVM-EGTPKEIF 232 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-C-----CEEEEEECCEEEE-ecCHHHHh
Confidence 9999999999999999999999999999876 3589999999999975 8 4999999999974 58887764
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
.
T Consensus 233 ~ 233 (280)
T PRK13633 233 K 233 (280)
T ss_pred c
Confidence 3
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=320.57 Aligned_cols=225 Identities=21% Similarity=0.283 Sum_probs=162.2
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee-----ecCCChHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE-----VVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~-----~~~~~~~~~ 239 (723)
+|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..| ..|+|.+.+.. +........
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccccccccccCCHHHH
Confidence 59999999999988999999999999999999999999999999999998755 45566666554 322111100
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
. ...+..++++.+..... ........+.+...+.............++.++++.+|+.....++.+.
T Consensus 84 ~---------~~~~~~i~~v~q~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK11701 84 R---------RLLRTEWGFVHQHPRDG----LRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPT 150 (258)
T ss_pred H---------HHhhcceEEEeeCcccc----cCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCc
Confidence 0 00112233332211000 0000111122211111111111123456788999999996434578999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+|||||||||+|||||+.+|+||||||||++||+.++.+|.+.|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999988653 67999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+ +.|+.+++
T Consensus 231 ~-~~~~~~~~ 239 (258)
T PRK11701 231 V-ESGLTDQV 239 (258)
T ss_pred E-EeCCHHHH
Confidence 6 45666554
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=319.97 Aligned_cols=223 Identities=20% Similarity=0.286 Sum_probs=164.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+..+. |..|+|.+.+..+.......
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~--- 80 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP--- 80 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh---
Confidence 489999999999889999999999999999999999999999999999986422 34688887776553211000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cccCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQGRPT 318 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~ 318 (723)
..++..++++.+.... .....+.+++...+.............++.++++.+|+.. ...++.+
T Consensus 81 --------~~~~~~i~~~~q~~~~------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 146 (252)
T PRK14256 81 --------VSIRRRVGMVFQKPNP------FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNA 146 (252)
T ss_pred --------HHhhccEEEEecCCCC------CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc
Confidence 0112223333221110 1111223333221111111122334567888999999853 2346789
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||++++|++|+++
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999876 579999999999999999999999999997
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+.+++
T Consensus 227 ~-~~~~~~~ 234 (252)
T PRK14256 227 E-CGETKKI 234 (252)
T ss_pred E-eCCHHHH
Confidence 5 4666554
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=318.40 Aligned_cols=205 Identities=29% Similarity=0.430 Sum_probs=163.7
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
||+++||+++|++. ..+|||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 1 MLKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred CeEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 57899999999742 24999999999999999999999999999999999999999998763 248899
Q ss_pred ccccccccCccccHHHHHHh-hCCCCC-CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHFVDLLTMEETPVSYLLR-LHPDQE-GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|... +....+..+.+.. ...... .......+.++++.+|+... .++++.+|||||||||+||||++.+|++|||
T Consensus 77 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lllL 153 (232)
T PRK10771 77 FQENN--LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDL-LARLPGQLSGGQRQRVALARCLVREQPILLL 153 (232)
T ss_pred ecccc--cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHH-HhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98642 1111122222211 111100 01123457889999999754 3467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++ +.|+++++...
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~g~i~-~~g~~~~~~~~ 220 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP-----RSLVVADGRIA-WDGPTDELLSG 220 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC-----EEEEEECCEEE-EeCCHHHHHhC
Confidence 9999999999999999999875 3589999999999999995 99999999997 46888877643
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=326.70 Aligned_cols=208 Identities=26% Similarity=0.389 Sum_probs=165.6
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCc---ceEEECCc----------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE---GEVRRSQK---------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~---G~I~~~~~---------- 559 (723)
+.+|+++|+++.|++....+|++|||+|.+|++++|+||||||||||+++|+|+++|++ |+|.+++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 46899999999997533358999999999999999999999999999999999999987 89987663
Q ss_pred -eeEEEEccccc---cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 560 -LRIGRYSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 560 -~~ig~~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
..++|++|.+. ...++.++.. +..... ........+.+.++++.|||.... ++++..|||||+|||+|||||+
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~-~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVA-FGLENR-AVPRPEMIKIVRDVLADVGMLDYI-DSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHH-hhHHhC-CCCHHHHHHHHHHHHHHCCChhHh-cCCcccCCHHHHHHHHHHHHHH
Confidence 24899998742 2233333321 111111 100001124577899999997644 4667999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++. +|| ++++|++|+++. .|+++++.
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d-----~i~~l~~G~i~~-~g~~~~~~ 231 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MAD-----QVLVLDDGKLLA-QGSPVEIF 231 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCC-----EEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999876 358999999999985 784 999999999985 57777654
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=315.12 Aligned_cols=215 Identities=20% Similarity=0.288 Sum_probs=158.7
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++||+++|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+..+...+....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~------ 72 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHER------ 72 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHH------
Confidence 5789999999988999999999999999999999999999999999998754 45667776665432221100
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-CCCccccCCCCCCCChH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL-GFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGG 324 (723)
.+..++++.+.... .....+.+++..... .........++.++++.+ ++.. ..++++.+||||
T Consensus 73 ------~~~~i~~~~q~~~~------~~~~t~~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LS~G 136 (222)
T cd03224 73 ------ARAGIGYVPEGRRI------FPELTVEENLLLGAY---ARRRAKRKARLERVYELFPRLKE-RRKQLAGTLSGG 136 (222)
T ss_pred ------HhcCeEEecccccc------CCCCcHHHHHHHHhh---hcCchhHHHHHHHHHHHHHhhhh-hhhCchhhCCHH
Confidence 01112222221100 011122232221111 111223345677788888 5653 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~ 215 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGT 215 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCC
Confidence 999999999999999999999999999999999999999765 5799999999999999999999999999963 466
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+++
T Consensus 216 ~~~~ 219 (222)
T cd03224 216 AAEL 219 (222)
T ss_pred HHHH
Confidence 5443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=323.80 Aligned_cols=222 Identities=23% Similarity=0.347 Sum_probs=165.6
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+..| ..|+|.+.+..+......
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~~~~~~~------ 76 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSRKG------ 76 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEECCCCcch------
Confidence 599999999996 57899999999999999999999999999999999998654 556777766654211110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
...++..++++.+.... ......+.+++...... ..........++..+++.+|+. ...++++.+|||
T Consensus 77 -----~~~~~~~ig~v~q~~~~-----~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~ 144 (283)
T PRK13636 77 -----LMKLRESVGMVFQDPDN-----QLFSASVYQDVSFGAVN-LKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSF 144 (283)
T ss_pred -----HHHHHhhEEEEecCcch-----hhccccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCH
Confidence 01122223333221100 00011222322211111 1122334456789999999997 456899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
|||||++|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++ +.
T Consensus 145 G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~ 223 (283)
T PRK13636 145 GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQ 223 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-Ee
Confidence 9999999999999999999999999999999999998888754 579999999999999999999999999996 45
Q ss_pred CChhhHHh
Q 048654 400 GNFDDFES 407 (723)
Q Consensus 400 g~~~~~~~ 407 (723)
|+++++..
T Consensus 224 g~~~~~~~ 231 (283)
T PRK13636 224 GNPKEVFA 231 (283)
T ss_pred CCHHHHhc
Confidence 88776643
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=297.85 Aligned_cols=203 Identities=31% Similarity=0.452 Sum_probs=166.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce---------eEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL---------RIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~---------~ig~~ 565 (723)
+|.+++|.++|+.. --.++++|..||++||+||+||||||||++|+|+..|.+|+|++++.. .++.+
T Consensus 1 ~l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 1 MLALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred CccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 46788999999743 236899999999999999999999999999999999999999988742 36677
Q ss_pred ccc--cccccCccccHHHHHHhhCCCCC-CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 566 SQH--FVDLLTMEETPVSYLLRLHPDQE-GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 566 ~q~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
+|. .+.++++.+|+- +...|... ....++.+..++.++||.+... +.+.+|||||||||+|||+|+++-+|||
T Consensus 77 FQEnNLFaHLtV~qNig---LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~-RLP~~LSGGqRQRvALARclvR~~PilL 152 (231)
T COG3840 77 FQENNLFAHLTVAQNIG---LGLSPGLKLNAEQREKVEAAAAQVGLAGFLK-RLPGELSGGQRQRVALARCLVREQPILL 152 (231)
T ss_pred hhccccchhhhhhhhhc---ccCCcccccCHHHHHHHHHHHHHhChhhHhh-hCccccCchHHHHHHHHHHHhccCCeEE
Confidence 774 445566665532 22223221 1124567889999999988775 5558999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||++.|||.-+..+..++.++. .|++||||..+.+.++++ +++++++|+|. +.|..+++..
T Consensus 153 LDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~-----~~~fl~~Gri~-~~g~~~~~~~ 219 (231)
T COG3840 153 LDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIAD-----RVVFLDNGRIA-AQGSTQELLS 219 (231)
T ss_pred ecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhh-----ceEEEeCCEEE-eeccHHHHhc
Confidence 999999999999999998887764 599999999999999984 99999999996 6677776543
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=337.57 Aligned_cols=197 Identities=26% Similarity=0.352 Sum_probs=159.6
Q ss_pred EcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------eeEEEEccc
Q 048654 504 SYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------------LRIGRYSQH 568 (723)
Q Consensus 504 ~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------------~~ig~~~q~ 568 (723)
.|++ ..+|+|+||+|.+||+++|+|||||||||||++|+|+++|++|+|++++. ..++|++|.
T Consensus 2 ~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 4654 34899999999999999999999999999999999999999999998762 358999997
Q ss_pred cc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC
Q 048654 569 FV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646 (723)
Q Consensus 569 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP 646 (723)
+. ..+++.++.. +....... ......+.+.++|+.+||.... ++++.+|||||||||+|||||+.+|+|||||||
T Consensus 80 ~~l~~~~TV~eNi~-~~~~~~~~-~~~~~~~~~~~~l~~vgL~~~~-~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 80 FALFPHMTILQNTS-LGPELLGW-PEQERKEKALELLKLVGLEEYE-HRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CcCCCCCCHHHHHH-HHHHHcCC-CHHHHHHHHHHHHHhcCCchhh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 43 3344544432 11111110 0001235678899999997654 466799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 647 TNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 647 T~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|++||+.++..+.+.|.++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~d-----rI~vl~~G~iv~-~g~~~ei~~ 219 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGD-----RIVIMKAGEIVQ-VGTPDEILR 219 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEeCCEEEe-eCCHHHHHh
Confidence 9999999999999998765 4699999999999999995 999999999975 588887643
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=319.29 Aligned_cols=219 Identities=26% Similarity=0.311 Sum_probs=165.1
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC-CCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP-VPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..+ .|..|+|.+.++++...+..
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~------ 75 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV------ 75 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH------
Confidence 58999999999999999999999999999999999999999999999998643 45678888777665322111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhCCCCc---cccCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL--GSDAAEAQASKILAGLGFTK---EMQGRPT 318 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~ 318 (723)
.++..++++.+.... . ...+.+++.... .+... .......++.++++.+|+.+ ...++.+
T Consensus 76 -------~~~~~i~~~~q~~~l------~-~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 140 (246)
T PRK14269 76 -------ALRKNVGMVFQQPNV------F-VKSIYENISYAP-KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNA 140 (246)
T ss_pred -------HHhhhEEEEecCCcc------c-cccHHHHhhhHH-hhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCc
Confidence 112233333222111 0 112222222111 11111 11234556788999999952 2346788
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+|||+++++..+||+|++|++|+++
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 679999999999999999999999999997
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+..++
T Consensus 221 ~-~g~~~~~ 228 (246)
T PRK14269 221 E-FGESKEF 228 (246)
T ss_pred E-ECCHHHH
Confidence 4 4665554
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=318.48 Aligned_cols=221 Identities=24% Similarity=0.339 Sum_probs=163.5
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.|+++||++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+..+.| ..|+|.+.+.++......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~---- 78 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID---- 78 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc----
Confidence 5899999999998899999999999999999999999999999999999765333 478888777654321000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
...++..++++.+.... . ...+.+++..... .... .......++.++++.+++.. ...+++
T Consensus 79 -------~~~~~~~i~~~~q~~~~------~-~~t~~~ni~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 143 (250)
T PRK14240 79 -------VNQLRKRVGMVFQQPNP------F-PMSIYDNVAYGPR-THGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKS 143 (250)
T ss_pred -------hHHHhccEEEEecCCcc------C-cccHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcC
Confidence 00112223333221110 0 1122232221111 1111 12234567888899988742 234688
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i 223 (250)
T PRK14240 144 ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI 223 (250)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876 47999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+.+++
T Consensus 224 ~~-~~~~~~~ 232 (250)
T PRK14240 224 VE-FGDTVDL 232 (250)
T ss_pred EE-eCCHHHH
Confidence 75 4665544
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=329.78 Aligned_cols=234 Identities=20% Similarity=0.202 Sum_probs=166.2
Q ss_pred cceEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCCh--
Q 048654 164 KDITIDNFSVAARG-----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR-- 236 (723)
Q Consensus 164 ~~I~l~nls~~y~~-----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~-- 236 (723)
.+|+++|+++.|++ +++|+||||+|++|+++||+|+||||||||+++|+|++.|. .|+|.+.+..+.....
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~--~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK--YGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCEEcccccccc
Confidence 46999999999974 36999999999999999999999999999999999987654 5566665554321100
Q ss_pred HHHHHHHHh-hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccC
Q 048654 237 SAIQAVVSA-HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 237 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
......... ......++..++++.+.... ......+.+++...... ..........++.++++.+|+.....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~-----~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEY-----QLFKDTIEKDIMFGPVA-LGVKKSEAKKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchh-----ccccchHHHHHHhhHHh-cCCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 000000000 00111233344444332100 00011223333211111 112233455678899999999644457
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+.+.+|||||||||+|||||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~ 251 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 899999999999999999999999999999999999999999999998754 67999999999999999999999999
Q ss_pred CEEEEecCChhhHH
Q 048654 393 QKLHFYRGNFDDFE 406 (723)
Q Consensus 393 G~i~~~~g~~~~~~ 406 (723)
|+++. .|+.+++.
T Consensus 252 G~i~~-~g~~~~~~ 264 (320)
T PRK13631 252 GKILK-TGTPYEIF 264 (320)
T ss_pred CEEEE-eCCHHHHh
Confidence 99974 57776654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=323.05 Aligned_cols=210 Identities=28% Similarity=0.354 Sum_probs=165.1
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~------- 559 (723)
..++|+++||++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|++++.
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999975 3589999999999999999999999999999999999975 8999987652
Q ss_pred ------eeEEEEccccccc-cCccccHHHHHHhhCCCC-CCCcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHH
Q 048654 560 ------LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQ-EGLSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARV 628 (723)
Q Consensus 560 ------~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv 628 (723)
..++|++|..... .++.++.. +........ ........+..+++.+|+... ...+++.+|||||||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVA-YGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHH-HHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 2478999874211 12222221 111111000 000123457788999999531 22456789999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
+|||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| ++++|++|+|+. .|++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d-----~v~~l~~G~i~~-~g~~ 246 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQ-----RTAFFHLGNLVE-VGDT 246 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCC-----EEEEEECCEEEE-eCCH
Confidence 99999999999999999999999999999999998874 589999999999999995 999999999975 4777
Q ss_pred HHHH
Q 048654 707 EEYK 710 (723)
Q Consensus 707 ~~~~ 710 (723)
+++.
T Consensus 247 ~~~~ 250 (267)
T PRK14235 247 EKMF 250 (267)
T ss_pred HHHH
Confidence 7664
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=359.50 Aligned_cols=209 Identities=29% Similarity=0.510 Sum_probs=169.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccc-
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL- 572 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~- 572 (723)
.+|+++||+++|++. .+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+...+++++|.....
T Consensus 2 ~~l~i~~ls~~~~~~--~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 2 SLISIHGAWLSFSDA--PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred cEEEEeeEEEEeCCc--eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 379999999999853 58999999999999999999999999999999999999999999988766678887743110
Q ss_pred -cCccccHH-------HH------H------------Hh-------hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCC
Q 048654 573 -LTMEETPV-------SY------L------------LR-------LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAK 619 (723)
Q Consensus 573 -~~~~~~~~-------~~------~------------~~-------~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~ 619 (723)
..+.+... .. + +. .+....+......+..+|..|||.. .+++.+
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~ 156 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---DAALSS 156 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC---CCchhh
Confidence 11111100 00 0 00 0000001112356788999999962 468899
Q ss_pred CCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 620 LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
|||||||||+|||+|+.+|+||||||||||||+.++..|.+.|.++.+|||+||||++++..+|| +|++|++|++
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d-----~i~~L~~G~i 231 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMAT-----RIVDLDRGKL 231 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcC-----eEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999995 9999999999
Q ss_pred EecCCCHHHHHHH
Q 048654 700 SRFPGTFEEYKED 712 (723)
Q Consensus 700 ~~~~g~~~~~~~~ 712 (723)
+.+.|++..|...
T Consensus 232 ~~~~g~~~~~~~~ 244 (635)
T PRK11147 232 VSYPGNYDQYLLE 244 (635)
T ss_pred EEecCCHHHHHHH
Confidence 8888999887553
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=319.97 Aligned_cols=222 Identities=22% Similarity=0.276 Sum_probs=165.4
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+..|.| ..|+|.+.+.++.......
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~-- 88 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL-- 88 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH--
Confidence 36999999999998899999999999999999999999999999999999865322 4688887776553211000
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCc---cccCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTK---EMQGR 316 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~ 316 (723)
..++..++++.+.... . ...+.+++.... ..... .......++.++++.+|+.+ ...++
T Consensus 89 ---------~~~~~~i~~v~q~~~~------~-~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 151 (259)
T PRK14274 89 ---------VELRKNIGMVFQKGNP------F-PQSIFDNVAYGP-RIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT 151 (259)
T ss_pred ---------HHHhhceEEEecCCcc------c-ccCHHHHHHhHH-HhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence 0112233333221111 0 012223222111 11111 12334566788999999852 23468
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+|||+++++..+||+|++|++|+
T Consensus 152 ~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 231 (259)
T PRK14274 152 QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGE 231 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999876 4799999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|+.+++
T Consensus 232 i~~-~g~~~~~ 241 (259)
T PRK14274 232 LVE-CNDTNKM 241 (259)
T ss_pred EEE-ECCHHHH
Confidence 974 4776665
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=321.99 Aligned_cols=208 Identities=25% Similarity=0.331 Sum_probs=164.1
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~-------- 559 (723)
..+|+++|+++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 11 ~~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 5689999999999753 58999999999999999999999999999999999986 58999987652
Q ss_pred -----eeEEEEccccccccCccccHHHHHH---hhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDLLTMEETPVSYLL---RLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 560 -----~~ig~~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv 628 (723)
..++|++|... .+. .+....+. ..+.........+.+.++++.+++.. ....+++.+|||||+|||
T Consensus 89 ~~~~~~~i~~~~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 89 IALLRAKVGMVFQKPT-PFP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred hHHHhcceEEEecCCc-cCc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 24889998742 111 22222221 11111000011245778899999742 122456789999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
+|||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| ++++|++|+++. .|+.
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~ 239 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSD-----YTAFMYLGELIE-FGNT 239 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCH
Confidence 99999999999999999999999999999999998874 589999999999999995 999999999975 4777
Q ss_pred HHHHH
Q 048654 707 EEYKE 711 (723)
Q Consensus 707 ~~~~~ 711 (723)
+++..
T Consensus 240 ~~~~~ 244 (260)
T PRK10744 240 DTIFT 244 (260)
T ss_pred HHHHh
Confidence 76643
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=318.50 Aligned_cols=221 Identities=22% Similarity=0.269 Sum_probs=163.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|++...| ..|+|.+.++++......
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~---- 80 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD---- 80 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc----
Confidence 6899999999998899999999999999999999999999999999999854333 367888777655321100
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
...++..++++.+.... . ...+.+++..... ..... ......++.++++.+|+.. ...+++
T Consensus 81 -------~~~~~~~i~~v~q~~~~------~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (252)
T PRK14239 81 -------TVDLRKEIGMVFQQPNP------F-PMSIYENVVYGLR-LKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDS 145 (252)
T ss_pred -------hHhhhhcEEEEecCCcc------C-cCcHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcC
Confidence 00112223333221110 0 1122233321111 11111 1223466788899998742 234688
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14239 146 ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 47999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+..++
T Consensus 226 ~~-~g~~~~~ 234 (252)
T PRK14239 226 IE-YNDTKQM 234 (252)
T ss_pred EE-eCCHHHH
Confidence 74 4666554
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=321.13 Aligned_cols=226 Identities=23% Similarity=0.318 Sum_probs=167.1
Q ss_pred cCCccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCCh
Q 048654 160 DANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDR 236 (723)
Q Consensus 160 ~~~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~ 236 (723)
++..++|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+..|. |..|+|.+.+..+.....
T Consensus 16 ~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 16 DAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred cccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 44566899999999999999999999999999999999999999999999999987653 457788776654431110
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cc
Q 048654 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EM 313 (723)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~ 313 (723)
...++..++++.+.... . ...+.+++.................++.++++.+|+.. ..
T Consensus 96 ------------~~~~~~~i~~v~q~~~l------~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 156 (276)
T PRK14271 96 ------------VLEFRRRVGMLFQRPNP------F-PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDR 156 (276)
T ss_pred ------------hHHHhhheEEeccCCcc------C-CccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhH
Confidence 00112223333221110 0 11222222211111001122233456678899999853 22
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
.++.+.+|||||+|||+|||||+.+|+||||||||++||+.++.+|.++|+++ ..|||+|||+++++..+||+|++|+
T Consensus 157 l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~ 236 (276)
T PRK14271 157 LSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFF 236 (276)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46788999999999999999999999999999999999999999999999876 4799999999999999999999999
Q ss_pred CCEEEEecCChhhH
Q 048654 392 DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 ~G~i~~~~g~~~~~ 405 (723)
+|+++. .|+.+++
T Consensus 237 ~G~i~~-~g~~~~~ 249 (276)
T PRK14271 237 DGRLVE-EGPTEQL 249 (276)
T ss_pred CCEEEE-eCCHHHH
Confidence 999974 4676655
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=312.32 Aligned_cols=203 Identities=26% Similarity=0.376 Sum_probs=155.3
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| .+|+|.+.+..+... .
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~--~-------- 68 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQKN--I-------- 68 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccch--H--------
Confidence 5789999999989999999999999999999999999999999999998654 466777665543210 0
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
..+..++++.+.... .....+.+++..... . ... ...++.++++.+|+.. ..++++.+|||||
T Consensus 69 -----~~~~~i~~~~q~~~~------~~~~tv~e~l~~~~~-~--~~~--~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 131 (208)
T cd03268 69 -----EALRRIGALIEAPGF------YPNLTARENLRLLAR-L--LGI--RKKRIDEVLDVVGLKD-SAKKKVKGFSLGM 131 (208)
T ss_pred -----HHHhhEEEecCCCcc------CccCcHHHHHHHHHH-h--cCC--cHHHHHHHHHHcCCHH-HHhhhHhhCCHHH
Confidence 111222333221100 111122333222111 1 111 2456788999999964 4578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 132 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 132 KQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999998764 5799999999999999999999999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=324.66 Aligned_cols=223 Identities=23% Similarity=0.292 Sum_probs=162.8
Q ss_pred ceEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAARG-----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~-----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.|+++||+++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+..| .+|+|.+.+.++.......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~- 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLITSTSKNK- 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccccccc-
Confidence 4889999999975 4699999999999999999999999999999999998654 5677777666543211000
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
....++..++++.+..... .. ...+.+++..... ...........++.++++.+|+.....++++.
T Consensus 79 --------~~~~~~~~i~~~~q~~~~~----~~-~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (280)
T PRK13649 79 --------DIKQIRKKVGLVFQFPESQ----LF-EETVLKDVAFGPQ-NFGVSQEEAEALAREKLALVGISESLFEKNPF 144 (280)
T ss_pred --------CHHHHHhheEEEeeChhhh----hc-cccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcc
Confidence 0001122233332211000 00 0122222221111 11122234456788899999996444578999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998765 579999999999999999999999999997
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+.+++
T Consensus 225 ~-~g~~~~~ 232 (280)
T PRK13649 225 L-SGKPKDI 232 (280)
T ss_pred E-eCCHHHH
Confidence 4 4666554
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=318.52 Aligned_cols=225 Identities=20% Similarity=0.309 Sum_probs=163.3
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC---hH--HHH
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD---RS--AIQ 240 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~---~~--~~~ 240 (723)
|+++||++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.++.+.... .. ...
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccccccc
Confidence 5789999999988999999999999999999999999999999999998654 5567777666543211 00 000
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
......++..++++.+.... .....+.+++.................++.++++.+|+.. ..++.+.+
T Consensus 79 -----~~~~~~~~~~i~~v~q~~~~------~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~ 146 (252)
T TIGR03005 79 -----EKHLRQMRNKIGMVFQSFNL------FPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-KADHMPAQ 146 (252)
T ss_pred -----hhHHHHHhhCeEEEecCccc------CCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhhcChhh
Confidence 00001122223333221110 0111223333211111111222334567889999999974 45789999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||+|||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999988754 679999999999999999999999999996
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
+.|+.+++
T Consensus 227 -~~g~~~~~ 234 (252)
T TIGR03005 227 -EQGKPDEI 234 (252)
T ss_pred -EeCCHHHH
Confidence 45776655
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=315.42 Aligned_cols=198 Identities=27% Similarity=0.402 Sum_probs=162.3
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------eeEEEEccc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------LRIGRYSQH 568 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------~~ig~~~q~ 568 (723)
|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|.
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~ 78 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIES 78 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCC
Confidence 468999999975 35899999999999999999999999999999999999999999988763 257899886
Q ss_pred cc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC
Q 048654 569 FV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646 (723)
Q Consensus 569 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP 646 (723)
.. ..+++.++.... ...+. . ....+.++++.+|+.... ++++.+|||||+|||+||||++.+|++||||||
T Consensus 79 ~~~~~~~t~~~~~~~~-~~~~~----~-~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv~laral~~~p~llllDEP 151 (223)
T TIGR03740 79 PPLYENLTARENLKVH-TTLLG----L-PDSRIDEVLNIVDLTNTG-KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEP 151 (223)
T ss_pred CCccccCCHHHHHHHH-HHHcC----C-CHHHHHHHHHHcCCcHHH-hhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 42 122333332111 11111 1 235678899999997544 466789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 647 TNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 647 T~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
|+|||+.++..+.++|.++. .|||+||||.+++..+|| +|++|++|+++. .|++.+
T Consensus 152 ~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~g~i~~-~~~~~~ 210 (223)
T TIGR03740 152 TNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLAD-----HIGIISEGVLGY-QGKINK 210 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC-----EEEEEeCCEEEE-ecChhh
Confidence 99999999999999998873 589999999999999995 999999999975 466543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=323.70 Aligned_cols=223 Identities=21% Similarity=0.281 Sum_probs=161.4
Q ss_pred cceEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCC
Q 048654 164 KDITIDNFSVAARG---------KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234 (723)
Q Consensus 164 ~~I~l~nls~~y~~---------~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~ 234 (723)
.+|+++||+++|++ +++|+|+||+|++|++++|+|||||||||||++|+|++.|. +|+|.+.+.++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~ 80 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFG 80 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CCEEEECCEECCCC
Confidence 35999999999962 57999999999999999999999999999999999987654 55666666554321
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc
Q 048654 235 DRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
.... .+..++++.+.... .......+.+.+.........+.......++.++++.+|+.....
T Consensus 81 ~~~~-------------~~~~i~~v~q~~~~----~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 143 (267)
T PRK15112 81 DYSY-------------RSQRIRMIFQDPST----SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA 143 (267)
T ss_pred chhh-------------HhccEEEEecCchh----hcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH
Confidence 1100 01112222211000 000011111222111110001122334567889999999954445
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
++++.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+|||+++++..+||+|++|
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 144 SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 7888999999999999999999999999999999999999999999998764 679999999999999999999999
Q ss_pred eCCEEEEecCChhhHH
Q 048654 391 HDQKLHFYRGNFDDFE 406 (723)
Q Consensus 391 ~~G~i~~~~g~~~~~~ 406 (723)
++|+++ +.|+++++.
T Consensus 224 ~~G~i~-~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVV-ERGSTADVL 238 (267)
T ss_pred ECCEEE-ecCCHHHHh
Confidence 999996 457766553
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=315.01 Aligned_cols=213 Identities=27% Similarity=0.362 Sum_probs=158.1
Q ss_pred cceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 164 KDITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 164 ~~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
++|+++||++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+.. |..|+|.+.+.++........
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHH
Confidence 36999999999974 579999999999999999999999999999999999865 456777777765543221110
Q ss_pred HHHHHhhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 240 QAVVSAHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 240 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
..++ ..++++.+.... .....+.+++.... .+..........++.++++.+|+.+ ..++.+
T Consensus 82 ----------~~~~~~~i~~v~q~~~~------~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~ 143 (233)
T PRK11629 82 ----------AELRNQKLGFIYQFHHL------LPDFTALENVAMPL-LIGKKKPAEINSRALEMLAAVGLEH-RANHRP 143 (233)
T ss_pred ----------HHHHhccEEEEecCccc------CCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCch-hhhCCh
Confidence 0011 122333221110 00112233322211 1111223344567899999999974 457889
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+ |++++|++|+
T Consensus 144 ~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~ 222 (233)
T PRK11629 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGR 222 (233)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCE
Confidence 999999999999999999999999999999999999999999998764 57999999999999875 6999999999
Q ss_pred EEE
Q 048654 395 LHF 397 (723)
Q Consensus 395 i~~ 397 (723)
++.
T Consensus 223 i~~ 225 (233)
T PRK11629 223 LTA 225 (233)
T ss_pred EEE
Confidence 863
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=320.73 Aligned_cols=225 Identities=24% Similarity=0.332 Sum_probs=166.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC-CcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP-KNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~-~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++||++.|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..|.+ ..|+|.+.+..+.......
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~----- 78 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA----- 78 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc-----
Confidence 5899999999999999999999999999999999999999999999999876653 3578877776543211000
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH---H----HhcCchHHHHHHHHHHHhCCCCccccCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK---L----QILGSDAAEAQASKILAGLGFTKEMQGR 316 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l----~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 316 (723)
.....++..++++.+.... .....+.+++...... + ..........++.++++.+|+.. ..++
T Consensus 79 ---~~~~~~~~~i~~~~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~ 148 (262)
T PRK09984 79 ---RDIRKSRANTGYIFQQFNL------VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-FAHQ 148 (262)
T ss_pred ---hhHHHHHhheEEEcccccc------ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-HHhC
Confidence 0001112223333221110 0011222222111000 0 00011234567899999999964 4578
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
++.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 228 (262)
T PRK09984 149 RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228 (262)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999864 57999999999999999999999999
Q ss_pred CEEEEecCChhhH
Q 048654 393 QKLHFYRGNFDDF 405 (723)
Q Consensus 393 G~i~~~~g~~~~~ 405 (723)
|+++ +.|+++++
T Consensus 229 g~i~-~~g~~~~~ 240 (262)
T PRK09984 229 GHVF-YDGSSQQF 240 (262)
T ss_pred CEEE-EeCCHHHh
Confidence 9995 56887665
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=320.23 Aligned_cols=205 Identities=25% Similarity=0.310 Sum_probs=156.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|+++.|+++++|+|+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.+.++.....
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~-------- 70 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVEGPGA-------- 70 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCC--------
Confidence 47899999999988999999999999999999999999999999999998755 45667666655432110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.++++.+.... .....+.+++.... ............++.++++.+|+.. ..++++.+||||
T Consensus 71 ----------~~~~v~q~~~~------~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG 132 (255)
T PRK11248 71 ----------ERGVVFQNEGL------LPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGG 132 (255)
T ss_pred ----------cEEEEeCCCcc------CCCCcHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHH
Confidence 01111111000 00112222222111 1111222334567899999999974 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe--CCEEEE
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH--DQKLHF 397 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~--~G~i~~ 397 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|+ +|+++.
T Consensus 133 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 133 QRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 999999999999999999999999999999999999999764 5799999999999999999999998 599864
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=310.75 Aligned_cols=194 Identities=27% Similarity=0.380 Sum_probs=155.6
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
|+++|+++.|++. . .|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 76 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLF 76 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEe
Confidence 4689999999753 2 3999999999999999999999999999999999999999998763 2489999
Q ss_pred cccccccCccccHHHHHHhh-CCCCC-CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFVDLLTMEETPVSYLLRL-HPDQE-GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|...- ....+..+.+... ..... .......+.++++.+|+.... ++++.+|||||||||+|||||+.+|++||||
T Consensus 77 q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 77 QENNL--FAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-KRLPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred ccccc--CCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHH-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 97431 1111222222111 11100 001244678899999997544 4567899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 645 EPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|||+|||+.++..+.++|+++ +.|||+||||++++..+|| ++++|++|+++.
T Consensus 154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~G~i~~ 209 (211)
T cd03298 154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQ-----RVVFLDNGRIAA 209 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhC-----EEEEEECCEEee
Confidence 999999999999999999875 3589999999999999995 999999999864
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=321.72 Aligned_cols=209 Identities=28% Similarity=0.411 Sum_probs=166.4
Q ss_pred eEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-C----CcceEEECCc--------
Q 048654 495 LLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-P----TEGEVRRSQK-------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-p----~~G~I~~~~~-------- 559 (723)
+|+++||++.|... ...+++||||+|.+||++||||.+||||||+.+.|+|+++ | .+|+|.++++
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 47899999999643 2358999999999999999999999999999999999998 4 5689987764
Q ss_pred -------eeEEEEccccccccC----ccccHHHHHHhhCCCC-CCCcHHHHHHHHHHhCCCCCC--CCcCCCCCCCHHHH
Q 048654 560 -------LRIGRYSQHFVDLLT----MEETPVSYLLRLHPDQ-EGLSKQEAVRAKLGKFGLPSH--NHLTPIAKLSGGQK 625 (723)
Q Consensus 560 -------~~ig~~~q~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~~~--~~~~~i~~LSGGqk 625 (723)
..|++++|+....+. +..-..+.+ ..+... ......+.+.++|+.+||+.. ..+..+.+|||||+
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l-~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL-RLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHH-HHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 258999998644433 222222222 221111 011124568899999999864 23345689999999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|||+||.||+.+|+|||.||||++||+..+.+++++|+++ +.++|+||||+..+.++|| ||+||..|+|++
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD-----ri~VMYaG~iVE 234 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD-----RVAVMYAGRIVE 234 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc-----eEEEEECcEEEE
Confidence 9999999999999999999999999999999999999876 3589999999999999995 999999999997
Q ss_pred cCCCHHHHH
Q 048654 702 FPGTFEEYK 710 (723)
Q Consensus 702 ~~g~~~~~~ 710 (723)
. |+.+++.
T Consensus 235 ~-g~~~~i~ 242 (316)
T COG0444 235 E-GPVEEIF 242 (316)
T ss_pred e-CCHHHHh
Confidence 5 7766543
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=314.31 Aligned_cols=216 Identities=24% Similarity=0.349 Sum_probs=160.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|.|.+.+.++......
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~~~~~~------- 71 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLRRAPRA------- 71 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcccCChh-------
Confidence 47899999999999999999999999999999999999999999999998654 556777666544321111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
....++++.+.... .....+.+++... .............++.++++.+|+.. ..++++.+||||
T Consensus 72 -------~~~~i~~~~q~~~~------~~~~t~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G 136 (236)
T TIGR03864 72 -------ALARLGVVFQQPTL------DLDLSVRQNLRYH-AALHGLSRAEARERIAALLARLGLAE-RADDKVRELNGG 136 (236)
T ss_pred -------hhhhEEEeCCCCCC------cccCcHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHH
Confidence 01122222221110 0011222222211 11111222334567889999999974 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++.. ||+|++|++|+++. .|
T Consensus 137 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~-~~ 214 (236)
T TIGR03864 137 HRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLA-DG 214 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEE-eC
Confidence 999999999999999999999999999999999999998764 5799999999999975 99999999999964 46
Q ss_pred ChhhHH
Q 048654 401 NFDDFE 406 (723)
Q Consensus 401 ~~~~~~ 406 (723)
+.+.+.
T Consensus 215 ~~~~~~ 220 (236)
T TIGR03864 215 AAAELR 220 (236)
T ss_pred CHHHHH
Confidence 665543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=317.14 Aligned_cols=219 Identities=23% Similarity=0.353 Sum_probs=162.5
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|+++.|+++++|+|+||+|.+|++++|+|+|||||||||++|+|+..| ..|+|.+.+..+........
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~----- 74 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLTGLPEHQI----- 74 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecCCCCHHHH-----
Confidence 48999999999988999999999999999999999999999999999998755 45666666654432211100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH-------HHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK-------LQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
.+..++++.+.... .....+.+++...... +..........++.++++.+|+.. ..+++
T Consensus 75 -------~~~~i~~~~q~~~~------~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 140 (242)
T TIGR03411 75 -------ARAGIGRKFQKPTV------FENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-EADRL 140 (242)
T ss_pred -------HhcCeeEecccccc------CCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-hhcCC
Confidence 01112222111100 0011222222211100 000011234567899999999974 45789
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++.++||+|++|++|++
T Consensus 141 ~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 141 AGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999876 46999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+ +.|+.+++
T Consensus 221 ~-~~~~~~~~ 229 (242)
T TIGR03411 221 L-AEGSLDQV 229 (242)
T ss_pred E-eeCCHHHH
Confidence 7 45776655
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=336.39 Aligned_cols=200 Identities=27% Similarity=0.337 Sum_probs=161.1
Q ss_pred EEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------------e
Q 048654 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------------L 560 (723)
Q Consensus 500 ~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------------~ 560 (723)
++.+.|+. ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|+++++ .
T Consensus 29 ~~~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 29 EILDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 34556654 35799999999999999999999999999999999999999999998762 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.++|++|++. ...++.++.... ..... .........+.++++.+||.... ++++.+|||||||||+|||||+.+|
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~-~~~~g-~~~~~~~~~a~e~le~vgL~~~~-~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFG-LEMQG-MPEAERRKRVDEQLELVGLAQWA-DKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHH-HHhcC-CCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHhcCC
Confidence 4899999753 233444443211 11111 10011235678899999997654 4667899999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+||||||||++||+.++..+.+.|.++ +.|||+||||++++.++|| +|++|++|+++. .|+++++.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~D-----rI~vl~~G~iv~-~g~~~ei~ 253 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGN-----RIAIMEGGRIIQ-HGTPEEIV 253 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ecCHHHHh
Confidence 999999999999999999999998775 4699999999999999995 999999999975 58887764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=321.95 Aligned_cols=220 Identities=22% Similarity=0.303 Sum_probs=164.6
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
.+|+++|++++|+ ++.+|+|+||+|.+|++++|+|+||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~---- 75 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIRE---- 75 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHH----
Confidence 3589999999996 56799999999999999999999999999999999998654 5667777666553221111
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
+...++++.+.... ......+.+++.... ....+.......++.++++.+|+.. ..++.+.+||
T Consensus 76 ---------~~~~i~~v~q~~~~-----~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS 139 (277)
T PRK13652 76 ---------VRKFVGLVFQNPDD-----QIFSPTVEQDIAFGP-INLGLDEETVAHRVSSALHMLGLEE-LRDRVPHHLS 139 (277)
T ss_pred ---------HHhheEEEecCccc-----ccccccHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCC
Confidence 11222332221100 000112223322111 1111233344567889999999974 4578999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
||||||++|||||+.+|+||||||||++||+.++..+.++|+++ +.|||++||+++++..+||+|++|++|+++ +
T Consensus 140 ~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~ 218 (277)
T PRK13652 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-A 218 (277)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-E
Confidence 99999999999999999999999999999999999999988754 579999999999999999999999999997 4
Q ss_pred cCChhhHH
Q 048654 399 RGNFDDFE 406 (723)
Q Consensus 399 ~g~~~~~~ 406 (723)
.|+.+++.
T Consensus 219 ~g~~~~~~ 226 (277)
T PRK13652 219 YGTVEEIF 226 (277)
T ss_pred ECCHHHHh
Confidence 57776664
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=318.44 Aligned_cols=209 Identities=27% Similarity=0.341 Sum_probs=163.2
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CC---CcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL--SP---TEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~--~p---~~G~I~~~~~-------- 559 (723)
.++|+++||++.|+++ .+|+++||+|.+|++++|+||||||||||+++|+|+. +| ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 3 EPILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred CceEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 4589999999999753 5899999999999999999999999999999999985 46 5899987652
Q ss_pred -----eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|.... ..++.++.... ...............+..+++.+++.. ....+++.+|||||||||+|
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYG-LRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hHhhhhcEEEEecCCccCcCcHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 248899987421 12333332111 111111000012345677888888742 12345678999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++. .|+.++
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~ 233 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISD-----RTGFFLDGDLIE-YNDTKQ 233 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCC-----EEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999998874 689999999999999995 999999999975 577776
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
+.
T Consensus 234 ~~ 235 (252)
T PRK14239 234 MF 235 (252)
T ss_pred HH
Confidence 64
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=319.46 Aligned_cols=205 Identities=24% Similarity=0.324 Sum_probs=156.3
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
.+.|+++||+++|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+..+.
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~---------- 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPLA---------- 77 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEHH----------
Confidence 3569999999999999999999999999999999999999999999999998755 4566655433211
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
.++..++++.+.... .....+.+++... .. .....++.++++.+|+.. ..++++.+||
T Consensus 78 --------~~~~~i~~v~q~~~l------~~~~tv~enl~~~------~~-~~~~~~~~~~l~~~gl~~-~~~~~~~~LS 135 (257)
T PRK11247 78 --------EAREDTRLMFQDARL------LPWKKVIDNVGLG------LK-GQWRDAALQALAAVGLAD-RANEWPAALS 135 (257)
T ss_pred --------HhhCceEEEecCccC------CCCCcHHHHHHhc------cc-chHHHHHHHHHHHcCChh-HhcCChhhCC
Confidence 011122222221100 0011222222111 00 112457888999999974 4578999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++||+.++..|.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~- 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL- 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-
Confidence 99999999999999999999999999999999999999988754 5799999999999999999999999999964
Q ss_pred cCCh
Q 048654 399 RGNF 402 (723)
Q Consensus 399 ~g~~ 402 (723)
.++.
T Consensus 215 ~~~~ 218 (257)
T PRK11247 215 DLTV 218 (257)
T ss_pred eccc
Confidence 3443
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=310.30 Aligned_cols=214 Identities=21% Similarity=0.347 Sum_probs=173.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.+++++|+++||++.+++|+||++++|+++|++|+|||||||.+|+|.|+..| .+|.|.+.++++.... .+.++
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~~~----~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQEI----KNRIG 75 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhhhh----hhhcc
Confidence 58999999999999999999999999999999999999999999999998765 5567777777654211 11122
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
+.|+-..|.+. ..+.+.+. ++..+..+...+...++..+|+++++... ..+++.+||-|
T Consensus 76 yLPEERGLy~k-------------------~tv~dql~-yla~LkGm~~~e~~~~~~~wLer~~i~~~-~~~kIk~LSKG 134 (300)
T COG4152 76 YLPEERGLYPK-------------------MTVEDQLK-YLAELKGMPKAEIQKKLQAWLERLEIVGK-KTKKIKELSKG 134 (300)
T ss_pred cChhhhccCcc-------------------CcHHHHHH-HHHHhcCCcHHHHHHHHHHHHHhcccccc-ccchHHHhhhh
Confidence 22222222211 12233332 34456667778888999999999999754 47999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR---WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~---~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
++|+|.+..+++++|++||||||||||||.+++.|.+.+.+ .|.|||++||.++.+..+||++++|+.|+.+.+ |+
T Consensus 135 nqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~-G~ 213 (300)
T COG4152 135 NQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY-GT 213 (300)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEe-cc
Confidence 99999999999999999999999999999999999888765 478999999999999999999999999999765 88
Q ss_pred hhhHH
Q 048654 402 FDDFE 406 (723)
Q Consensus 402 ~~~~~ 406 (723)
.....
T Consensus 214 v~~ir 218 (300)
T COG4152 214 VEDIR 218 (300)
T ss_pred HHHHH
Confidence 76653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=322.63 Aligned_cols=208 Identities=24% Similarity=0.315 Sum_probs=163.1
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------eeEEEE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------LRIGRY 565 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------~~ig~~ 565 (723)
.+|+++||++.|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 5 ~~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 5 AGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred ceEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 368999999999632 35899999999999999999999999999999999999999999998763 248999
Q ss_pred ccccccc----cCccccHHHHHHhhCC--CCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 566 SQHFVDL----LTMEETPVSYLLRLHP--DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 566 ~q~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
+|+.... ..+.++.......... ..........+..+++.+||.... ++++.+|||||||||+|||||+.+|+
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-HRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9874211 1122211100000000 000011234567889999997544 46789999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +++++ +|+++. .|+++++.
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d-----~v~~~-~G~i~~-~g~~~~~~ 229 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD-----YTVMV-KGTVLA-SGPTETTF 229 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEE-CCEEEe-ecCHHhcc
Confidence 99999999999999999999999877 3589999999999999995 88777 899974 57777653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=323.02 Aligned_cols=218 Identities=27% Similarity=0.336 Sum_probs=161.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|+++++|+|+||+|++|++++|+|+|||||||||++|+|+..| ..|+|.+.+..+......
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~------- 72 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSR------- 72 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhHHCCHH-------
Confidence 58999999999999999999999999999999999999999999999998655 456666665543221111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHH-H--HHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY-E--KLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
.+...++++.+.... .....+.+++.... . ............++.++++.+|+.. ..++++.+|
T Consensus 73 ------~~~~~i~~~~q~~~~------~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 139 (255)
T PRK11231 73 ------QLARRLALLPQHHLT------PEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-LADRRLTDL 139 (255)
T ss_pred ------HHhhheEEecccCCC------CCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-HHcCCcccC
Confidence 111222332221111 00111222221100 0 0001112234567888999999964 457899999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
||||+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+|||+++++.++||+|++|++|+++ +
T Consensus 140 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~ 218 (255)
T PRK11231 140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-A 218 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-E
Confidence 999999999999999999999999999999999999999998764 579999999999999999999999999996 4
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
.|+++++
T Consensus 219 ~~~~~~~ 225 (255)
T PRK11231 219 QGTPEEV 225 (255)
T ss_pred EcCHHHh
Confidence 5666554
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=319.94 Aligned_cols=209 Identities=24% Similarity=0.347 Sum_probs=164.7
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS--P---TEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~--p---~~G~I~~~~~------- 559 (723)
..++|+++|+++.|++. .+|+++||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.+++.
T Consensus 9 ~~~~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 9 KQEVYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred CCceEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 45789999999999753 58999999999999999999999999999999999987 3 5899987653
Q ss_pred ------eeEEEEccccccccCccccHHHHHH---hhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHH
Q 048654 560 ------LRIGRYSQHFVDLLTMEETPVSYLL---RLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKAR 627 (723)
Q Consensus 560 ------~~ig~~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqR 627 (723)
..++|++|.... +. .+....+. ..+...........+..+++.+++.. ....+++.+||||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNP-FP--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred CHHHHhhceEEEecCCcc-cc--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 237899987421 11 12222221 11110000011234667888998853 12346778999999999
Q ss_pred HHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCC
Q 048654 628 VVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705 (723)
Q Consensus 628 v~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~ 705 (723)
|+|||+|+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| ++++|++|+++. .|+
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d-----~i~~l~~G~i~~-~g~ 237 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSD-----QTAFFYMGELVE-CND 237 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCC-----EEEEEECCEEEE-ECC
Confidence 999999999999999999999999999999999999874 689999999999999995 999999999975 588
Q ss_pred HHHHHH
Q 048654 706 FEEYKE 711 (723)
Q Consensus 706 ~~~~~~ 711 (723)
++++..
T Consensus 238 ~~~~~~ 243 (259)
T PRK14274 238 TNKMFS 243 (259)
T ss_pred HHHHhh
Confidence 887643
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=320.65 Aligned_cols=223 Identities=19% Similarity=0.284 Sum_probs=163.5
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC--C-CCCcEEEEEeeeeecCCChHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI--P-VPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~--~-~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
..+|+++|++++|+++++|+|+||+|.+|++++|+|+|||||||||++|+|+.. + .|..|.|.+.++.+......
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~-- 96 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN-- 96 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc--
Confidence 346999999999998999999999999999999999999999999999999753 2 25677887777655321110
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCc---cccC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTK---EMQG 315 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~ 315 (723)
...++..++++.+.... . ...+.+++..... .... ........+.++++.+++.. ...+
T Consensus 97 ---------~~~~~~~i~~v~q~~~~------~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 97 ---------VVNLRREIGMVFQKPNP------F-PKSIYNNITHALK-YAGERRKSVLDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred ---------HHHHhccEEEEecCCcc------C-cccHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHh
Confidence 00112223333221110 0 0122222221111 1111 11223456778888888742 2346
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+++.+||||||||++|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 160 ~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G 239 (268)
T PRK14248 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNG 239 (268)
T ss_pred cCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999999876 479999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .|+.+++
T Consensus 240 ~i~~-~~~~~~~ 250 (268)
T PRK14248 240 DLVE-YDQTEQI 250 (268)
T ss_pred EEEE-eCCHHHH
Confidence 9975 4666554
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=316.28 Aligned_cols=221 Identities=23% Similarity=0.302 Sum_probs=163.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|+++|+++.|+++++|+|+||+|++|++++|+|+|||||||||++|+|+..+. +..|+|.+.+..+.....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~----- 77 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL----- 77 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh-----
Confidence 689999999999889999999999999999999999999999999999986542 356788776654432110
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
....++..++++.+.... . ...+.+++..... ..... ....+..+.++++.+|+.. ...+++
T Consensus 78 ------~~~~~~~~i~~~~q~~~~------~-~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14262 78 ------DVTEYRKKVGMVFQKPTP------F-PMSIYDNVAFGPR-IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKP 143 (250)
T ss_pred ------hHHHhhhhEEEEecCCcc------C-cccHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCC
Confidence 001122233333221110 0 1122233222111 11111 1233456788899998853 235788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||+||++|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|++
T Consensus 144 ~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 144 GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223 (250)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 47999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+.+++
T Consensus 224 ~~-~g~~~~~ 232 (250)
T PRK14262 224 IE-YGPTREI 232 (250)
T ss_pred EE-ecCHHHH
Confidence 74 4666554
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=319.85 Aligned_cols=207 Identities=27% Similarity=0.352 Sum_probs=163.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc----------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK---------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~---------- 559 (723)
+|+++|+++.|++. .+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 68999999999753 589999999999999999999999999999999999974 7999987652
Q ss_pred ---eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 ---~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|... ...++.++.... .............+.+..+++.+|+.. ....+++.+|||||||||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAG-LKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 24789998642 223333332111 111111000012345677899999842 223467799999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEE------CCeEEecC
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVE------NGTVSRFP 703 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~------~G~i~~~~ 703 (723)
|||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| +|++|+ +|+|+. .
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d-----~i~~l~~~~~~~~g~i~~-~ 234 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSD-----QTAFFNLEATGKPGRLVE-I 234 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEEecccCCCCceEEe-c
Confidence 99999999999999999999999999999998874 689999999999999995 999997 799975 5
Q ss_pred CCHHHHH
Q 048654 704 GTFEEYK 710 (723)
Q Consensus 704 g~~~~~~ 710 (723)
|+++++.
T Consensus 235 ~~~~~~~ 241 (258)
T PRK14241 235 DDTEKIF 241 (258)
T ss_pred CCHHHHH
Confidence 7887764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=312.65 Aligned_cols=193 Identities=33% Similarity=0.493 Sum_probs=154.7
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++|+++.|++....+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 6899999999753345899999999999999999999999999999999999999999998763 24889
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCc----------CCCCCCCHHHHHHHHHHHHH
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL----------TPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~----------~~i~~LSGGqkqRv~lAral 634 (723)
++|+... +. .+..+.+ ...... .....+..+++.+++...... ..+.+|||||||||+|||||
T Consensus 83 ~~q~~~~-~~--~tv~e~l-~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 83 VPQDVTL-FY--GTLRDNI-TLGAPL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred eCCCCcc-cc--chHHHHh-hcCCCC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 9987421 11 2333322 111111 123446677787887543221 13469999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++ .+|| ++++|++|+++.
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d-----~v~~l~~g~i~~ 218 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVD-----RIIVMDSGRIVA 218 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCC-----EEEEEeCCeEee
Confidence 99999999999999999999999999999875 5899999999987 6884 999999999864
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=316.91 Aligned_cols=225 Identities=22% Similarity=0.292 Sum_probs=160.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee-----ecCCChHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE-----VVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~-----~~~~~~~~~ 239 (723)
+|+++|+++.|+++.+|+|+||+|++|++++|+|+|||||||||++|+|+..| .+|+|.+.+.+ +........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccccccccccCCHHHH
Confidence 58999999999988999999999999999999999999999999999998765 45666665433 211111000
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
. ..+...++++.+..... ........+.+......+..........++.++++.+|+.....++.+.
T Consensus 81 ~---------~~~~~~i~~~~q~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 147 (253)
T TIGR02323 81 R---------RLMRTEWGFVHQNPRDG----LRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPR 147 (253)
T ss_pred H---------HhhhcceEEEEeCcccc----cCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCch
Confidence 0 00111223322211000 0000111112211111111011123346788999999996435578999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
.|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||++++|++|++
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999988753 57999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+.+++
T Consensus 228 ~~-~~~~~~~ 236 (253)
T TIGR02323 228 VE-SGLTDQV 236 (253)
T ss_pred EE-ECCHHHH
Confidence 74 4665554
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=317.86 Aligned_cols=209 Identities=27% Similarity=0.324 Sum_probs=163.9
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~-------- 559 (723)
+++|+++|+++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 2 KIKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred ccEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 478999999999975 3589999999999999999999999999999999999875 7999987652
Q ss_pred -----eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|...-. .++.++.. +................+..+++.+++.. ....+++.+|||||||||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVA-YGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHH-hHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 2489999874211 22222221 11111110000011245677899998742 12345678999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||+|+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++. .|++++
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d-----~v~~l~~G~i~~-~~~~~~ 232 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSD-----YTAFFLMGDLIE-FNKTEK 232 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcC-----EEEEEECCeEEE-eCCHHH
Confidence 999999999999999999999999999999998873 689999999999999995 999999999985 477776
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
+.
T Consensus 233 ~~ 234 (251)
T PRK14270 233 IF 234 (251)
T ss_pred Hh
Confidence 54
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=352.47 Aligned_cols=212 Identities=29% Similarity=0.474 Sum_probs=172.0
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccc--
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFV-- 570 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~-- 570 (723)
..+|+++||+++|++. ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++.
T Consensus 2 ~~~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred cEEEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence 3589999999999722 3589999999999999999999999999999999999999999999877678999999742
Q ss_pred cccCccccHHHHHHhh-------------CCCCCC---------------------CcHHHHHHHHHHhCCCCCCCCcCC
Q 048654 571 DLLTMEETPVSYLLRL-------------HPDQEG---------------------LSKQEAVRAKLGKFGLPSHNHLTP 616 (723)
Q Consensus 571 ~~~~~~~~~~~~~~~~-------------~~~~~~---------------------~~~~~~~~~~L~~~gl~~~~~~~~ 616 (723)
+.+++.++....+... +..... ......+..++..+|+.. .+++
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~ 158 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDAD 158 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccCc
Confidence 2334444322111000 000000 001134566788888853 3467
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEEC
Q 048654 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVEN 696 (723)
Q Consensus 617 i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~ 696 (723)
+.+|||||||||+|||+|+.+|+||||||||+|||+.++..|.+.|+++++|||+||||++++..+|| +|++|++
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d-----~v~~l~~ 233 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAG-----WILELDR 233 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcC-----eEEEEEC
Confidence 89999999999999999999999999999999999999999999999998899999999999999995 9999999
Q ss_pred CeEEecCCCHHHHHHH
Q 048654 697 GTVSRFPGTFEEYKED 712 (723)
Q Consensus 697 G~i~~~~g~~~~~~~~ 712 (723)
|+++.+.|++++|.+.
T Consensus 234 g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 234 GRGIPWEGNYSSWLEQ 249 (552)
T ss_pred CEEEEecCCHHHHHHH
Confidence 9987788999887654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=284.32 Aligned_cols=226 Identities=23% Similarity=0.346 Sum_probs=179.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++|+++.||...+|-||+|+.+.|+.+.|+||+|+|||||+|.|+-+..|..| ...+.++........
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg--~l~ia~~~fd~s~~~------- 72 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSG--TLNIAGNHFDFSKTP------- 72 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCC--eEEecccccccccCc-------
Confidence 48999999999999999999999999999999999999999999999955555444 443333332211111
Q ss_pred hhHHHHHHHHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 245 AHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
.......+++.++++ ++..++ +...+.+++.+.......+..+++..++.++|.++.+.+ ..++.+-.|||
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lw-------phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsg 144 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLW-------PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSG 144 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccC-------chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceeccc
Confidence 113445677777765 333332 344555666555555555667788899999999999974 56899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||+|||+|||||+++|++||+||||++|||+-...+.++|+++ |.|-++|||..+++..++.+|++|++|+|+. .|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive-~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE-QG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEe-ec
Confidence 9999999999999999999999999999999888888887765 6799999999999999999999999999975 58
Q ss_pred ChhhHHhh
Q 048654 401 NFDDFESG 408 (723)
Q Consensus 401 ~~~~~~~~ 408 (723)
+.+.|...
T Consensus 224 ~a~~ft~p 231 (242)
T COG4161 224 DASCFTEP 231 (242)
T ss_pred chhhccCc
Confidence 77766543
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=317.31 Aligned_cols=208 Identities=25% Similarity=0.347 Sum_probs=162.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC---CCC--CcceEEECCc---------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD---LSP--TEGEVRRSQK--------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl---~~p--~~G~I~~~~~--------- 559 (723)
++|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+ ++| ++|+|.+++.
T Consensus 2 ~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 2 VKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred cEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 68999999999975 3589999999999999999999999999999999997 455 5899987652
Q ss_pred ----eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 ----~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|...-. .++.++.. +................+.++++.+|+... ...+++.+|||||||||+||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVA-YGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 1488999874211 12222221 111111100000123457788999998531 23466789999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++. .|+++++
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d-----~v~~l~~G~~~~-~~~~~~~ 232 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSD-----KTAFFYMGEMVE-YDDTKKI 232 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCC-----EEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999998874 589999999999999995 999999999975 5787776
Q ss_pred H
Q 048654 710 K 710 (723)
Q Consensus 710 ~ 710 (723)
.
T Consensus 233 ~ 233 (250)
T PRK14245 233 F 233 (250)
T ss_pred h
Confidence 4
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=309.54 Aligned_cols=204 Identities=28% Similarity=0.536 Sum_probs=173.1
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------eeEEEEcc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------LRIGRYSQ 567 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------~~ig~~~q 567 (723)
+|++++|+++|++. .+++||||+|++|+++|++|+|||||||.+|+|.|++.|++|+|.+++. .+|||+|.
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPE 79 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChh
Confidence 58999999999864 5899999999999999999999999999999999999999999999884 37999987
Q ss_pred c--cccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 568 H--FVDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 568 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
. +...+++.+. +.|+..+ .|+. ....+..||+++++..... +++.+||-|++|++.|..+++++|++||
T Consensus 80 ERGLy~k~tv~dq-l~yla~L----kGm~~~e~~~~~~~wLer~~i~~~~~-~kIk~LSKGnqQKIQfisaviHePeLlI 153 (300)
T COG4152 80 ERGLYPKMTVEDQ-LKYLAEL----KGMPKAEIQKKLQAWLERLEIVGKKT-KKIKELSKGNQQKIQFISAVIHEPELLI 153 (300)
T ss_pred hhccCccCcHHHH-HHHHHHh----cCCcHHHHHHHHHHHHHhcccccccc-chHHHhhhhhhHHHHHHHHHhcCCCEEE
Confidence 4 2333343332 2232222 2332 3456788999999987664 6899999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
||||++||||.+.+.|.+++.+++ .|||++||.|+.++++|| ++++|++|+.+ +.|+.+.++..
T Consensus 154 LDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD-----~llmL~kG~~V-~~G~v~~ir~~ 220 (300)
T COG4152 154 LDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCD-----RLLMLKKGQTV-LYGTVEDIRRS 220 (300)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhh-----hhheecCCceE-EeccHHHHHHh
Confidence 999999999999999999998774 699999999999999995 89999999997 46999888764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=322.56 Aligned_cols=207 Identities=26% Similarity=0.336 Sum_probs=164.9
Q ss_pred CeEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
++|+++||++.|++. ...+|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 379999999999742 235899999999999999999999999999999999999999999988763 24
Q ss_pred EEEEccccc---cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 562 IGRYSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 562 ig~~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
++|++|+.. ...++.++... ..... ........+.+..+++.+||.... .+++..|||||||||+|||||+.+|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~-~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAF-GMENQ-GIPREEMIKRVDEALLAVNMLDFK-TREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHh-hHHHc-CCCHHHHHHHHHHHHHHCCCHhHh-hCCcccCCHHHHHHHHHHHHHHcCC
Confidence 899999742 22333333211 11111 110001124567889999997544 4677999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+||||||||++||+.++..+.++|.++ +.|||+||||++++. .| |+|++|++|+++. .|+++++.
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~-----d~i~~l~~G~i~~-~g~~~~~~ 228 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SS-----DRILVMKAGEIIK-EAAPSELF 228 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hC-----CEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999766 468999999999996 58 4999999999975 57777754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=315.66 Aligned_cols=220 Identities=22% Similarity=0.289 Sum_probs=163.3
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCC-ChHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGD-DRSAI 239 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~-~~~~~ 239 (723)
+.|+++|+++.|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..+. +..|.|.+.+.++... +..
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~-- 79 (249)
T PRK14253 2 NKFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA-- 79 (249)
T ss_pred CeEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH--
Confidence 3589999999999999999999999999999999999999999999999987653 3467887766654211 111
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCc---cccC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTK---EMQG 315 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~ 315 (723)
.++..++++.+.... . ...+.+++..... ..... .....+++.++++.+|+.. ...+
T Consensus 80 -----------~~~~~i~~~~q~~~~------~-~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 140 (249)
T PRK14253 80 -----------DLRIKVGMVFQKPNP------F-PMSIYENVAYGLR-AQGIKDKKVLDEVVERSLRGAALWDEVKDRLK 140 (249)
T ss_pred -----------HHHhheeEEecCCCc------C-cccHHHHHHhHHH-hcCCCchHHHHHHHHHHHHHcCCchhhhHHhh
Confidence 112223333221110 0 1122222221111 11111 1233456778888888742 2346
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+++.+|||||+|||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+|||+++++..+||+|++|++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G 220 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMG 220 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999999876 479999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .|+.+++
T Consensus 221 ~i~~-~g~~~~~ 231 (249)
T PRK14253 221 ELVE-HDDTQVI 231 (249)
T ss_pred EEEE-eCCHHHH
Confidence 9974 4665544
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=319.03 Aligned_cols=224 Identities=20% Similarity=0.267 Sum_probs=166.2
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeeecCCChHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
..+|+++|++++|+++++|+|+||+|.+|++++|+|+|||||||||++|+|+..| .|..|+|.+.+..+......
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~-- 95 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN-- 95 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC--
Confidence 3469999999999999999999999999999999999999999999999998754 25678887776654311100
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cccCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQGR 316 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~ 316 (723)
...++..++++.+.... . ...+.+++.................++.++++.+++.. ...++
T Consensus 96 ---------~~~~~~~i~~v~q~~~~------~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~ 159 (267)
T PRK14237 96 ---------VYEMRKHIGMVFQRPNP------F-AKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHK 159 (267)
T ss_pred ---------hHHHhcceEEEecCCcc------c-cccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcC
Confidence 00112223333221110 0 01222333221111001112234567888899998842 23578
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 239 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGD 239 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999876 4799999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|+..++
T Consensus 240 i~~-~g~~~~~ 249 (267)
T PRK14237 240 LIE-YDKTRNI 249 (267)
T ss_pred EEE-eCCHHHH
Confidence 975 4776655
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=310.74 Aligned_cols=193 Identities=27% Similarity=0.388 Sum_probs=157.7
Q ss_pred CCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce--------eE
Q 048654 491 LTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL--------RI 562 (723)
Q Consensus 491 ~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~--------~i 562 (723)
.++++|+++|++++|+++ .+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.. .+
T Consensus 7 ~~~~~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred CCcceEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 346799999999999753 48999999999999999999999999999999999999999999987632 37
Q ss_pred EEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 563 GRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 563 g~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++|... ..+++.++... ..... +....+.++.++..+++.... ++++..|||||||||+|||+++.+|+|
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~-~~~~~----~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~l 158 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHF-LCGLH----GRRAKQMPGSALAIVGLAGYE-DTLVRQLSAGQKKRLALARLWLSPAPL 158 (214)
T ss_pred EEeecCcccccCCcHHHHHHH-HHHhc----CCcHHHHHHHHHHHcCChhhc-cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 88888632 12223222211 11111 112345577899999997654 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEEC
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVEN 696 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~ 696 (723)
|||||||++||+.+++.+.++|.++ +.|||+||||++++.++|+ ++|+++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~-----~i~~l~~ 212 (214)
T PRK13543 159 WLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT-----RMLTLEA 212 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc-----eEEEEee
Confidence 9999999999999999999999876 5799999999999999995 8998863
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.65 Aligned_cols=206 Identities=26% Similarity=0.366 Sum_probs=168.6
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
.++|+++|+++.|++. .+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 9 ~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 9 PPLLCARSISKQYSGV--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred CceEEEEeEEEEeCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 4689999999999753 5899999999999999999999999999999999999999999998763 2
Q ss_pred eEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 561 RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 561 ~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
.++|++|... +....+..+.+. +.... .....+.+.++++.+||.... ++++.+|||||||||+|||||+.+|+|
T Consensus 87 ~i~~v~q~~~--~~~~~tv~e~l~-~~~~~-~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~aL~~~p~l 161 (510)
T PRK15439 87 GIYLVPQEPL--LFPNLSVKENIL-FGLPK-RQASMQKMKQLLAALGCQLDL-DSSAGSLEVADRQIVEILRGLMRDSRI 161 (510)
T ss_pred CEEEEeccCc--cCCCCcHHHHhh-ccccc-chHHHHHHHHHHHHcCCCccc-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 4899999742 111122222221 11110 111245678899999997554 467899999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+|+ +.|+++++..
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d-----~i~~l~~G~i~-~~g~~~~~~~ 229 (510)
T PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLAD-----RISVMRDGTIA-LSGKTADLST 229 (510)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEE-EecChHHcCH
Confidence 9999999999999999999999876 3689999999999999995 99999999997 4688877643
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=321.61 Aligned_cols=218 Identities=18% Similarity=0.286 Sum_probs=162.5
Q ss_pred ceEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARG---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+..| ..|.|.+.+..+......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~---- 77 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLLTEENVW---- 77 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHH----
Confidence 5899999999963 4699999999999999999999999999999999998765 456677766654321111
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
.++..++++.+.... ......+.+++..... ...........++.++++.+|+.. ..++++.+|
T Consensus 78 ---------~~~~~i~~v~q~~~~-----~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~L 141 (279)
T PRK13650 78 ---------DIRHKIGMVFQNPDN-----QFVGATVEDDVAFGLE-NKGIPHEEMKERVNEALELVGMQD-FKEREPARL 141 (279)
T ss_pred ---------HHHhhceEEEcChHH-----hcccccHHHHHHhhHH-hCCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccC
Confidence 112233333221100 0001122233321111 111233345567899999999974 457999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++. +||+|++|++|+++.
T Consensus 142 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~ 220 (279)
T PRK13650 142 SGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVES 220 (279)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999988754 679999999999995 799999999999964
Q ss_pred ecCChhhHH
Q 048654 398 YRGNFDDFE 406 (723)
Q Consensus 398 ~~g~~~~~~ 406 (723)
.|+.+++.
T Consensus 221 -~g~~~~~~ 228 (279)
T PRK13650 221 -TSTPRELF 228 (279)
T ss_pred -ECCHHHHH
Confidence 57766553
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=315.94 Aligned_cols=222 Identities=22% Similarity=0.293 Sum_probs=164.7
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
++|+++|+++.|+++++|+|+||+|.+|++++|+|+|||||||||++|+|+..|. +..|.|.+.+..+......
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~--- 79 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD--- 79 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc---
Confidence 4689999999999889999999999999999999999999999999999986543 2567887776654321100
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCc---cccCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTK---EMQGR 316 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~ 316 (723)
...++..++++.+.... . ...+.+++.... ..... .......++.++++.+|+.. ...++
T Consensus 80 --------~~~~~~~i~~~~q~~~~------~-~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (251)
T PRK14270 80 --------VVELRKRVGMVFQKPNP------F-PMSIYDNVAYGP-RIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143 (251)
T ss_pred --------HHHHHhheEEEecCCCc------C-CCcHHHHHHhHH-HhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhC
Confidence 01112233333322111 0 112222222111 11111 12234566788999998742 23468
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|+
T Consensus 144 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~ 223 (251)
T PRK14270 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGD 223 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCe
Confidence 89999999999999999999999999999999999999999999999876 4799999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++.+ |+.+++
T Consensus 224 i~~~-~~~~~~ 233 (251)
T PRK14270 224 LIEF-NKTEKI 233 (251)
T ss_pred EEEe-CCHHHH
Confidence 9754 666554
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=316.26 Aligned_cols=221 Identities=25% Similarity=0.334 Sum_probs=163.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..+. +..|+|.+.++.+......
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~---- 79 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD---- 79 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch----
Confidence 589999999999899999999999999999999999999999999999987521 3577888777654321110
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
...++..++++.+.... . ...+.+++..... ..... .+....++.++++.+++.. ...+++
T Consensus 80 -------~~~~~~~i~~~~q~~~~------~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 144 (251)
T PRK14251 80 -------LVELRKEVGMVFQQPTP------F-PFSVYDNVAYGLK-IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRN 144 (251)
T ss_pred -------HHHhhccEEEEecCCcc------C-CCcHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccC
Confidence 00112223333221110 0 1122232221111 11111 1223456788899999841 234688
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||+||++|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|++
T Consensus 145 ~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14251 145 AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876 57999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+.. |+.+++
T Consensus 225 ~~~-~~~~~~ 233 (251)
T PRK14251 225 IEA-GPTEEM 233 (251)
T ss_pred EEe-CCHHHH
Confidence 754 665544
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=317.14 Aligned_cols=208 Identities=22% Similarity=0.347 Sum_probs=162.9
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CcceEEECCc---------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS--P---TEGEVRRSQK--------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~--p---~~G~I~~~~~--------- 559 (723)
..|+++|+++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|++++.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 36899999999975 358999999999999999999999999999999999986 4 6899987652
Q ss_pred ----eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 ----~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|+.. ...++.++.... ...............+.++++.+++.. .....++.+|||||||||+|
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAG-YKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhH-HHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 23789998742 222333332111 111110000012345678889999853 12235678999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| ++++|++|+|+. .|+.++
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~ 233 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSD-----YTAFFYMGDLVE-CGETKK 233 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCC-----EEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999998873 689999999999999995 999999999975 477776
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
+.
T Consensus 234 ~~ 235 (252)
T PRK14256 234 IF 235 (252)
T ss_pred HH
Confidence 53
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=311.64 Aligned_cols=212 Identities=27% Similarity=0.339 Sum_probs=156.7
Q ss_pred cceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 164 KDITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 164 ~~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
++|+++||+++|++ .++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|.|.+.+..+...+....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEcccCCHHHH
Confidence 36999999999975 3699999999999999999999999999999999998654 55677776665432221110
Q ss_pred HHHHHhhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 240 QAVVSAHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 240 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
...+ ..++++.+.... .....+.+++.... .+.........+++.++++.+|+.. ..++++
T Consensus 83 ----------~~~~~~~i~~~~q~~~l------~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~ 144 (228)
T PRK10584 83 ----------AKLRAKHVGFVFQSFML------IPTLNALENVELPA-LLRGESSRQSRNGAKALLEQLGLGK-RLDHLP 144 (228)
T ss_pred ----------HHHHhheEEEEEccccc------CCCcCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCHh-HhhCCh
Confidence 0011 122333221110 00112222222111 1111222344567899999999974 457889
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+||||||||++|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++.. ||++++|++|+
T Consensus 145 ~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~ 223 (228)
T PRK10584 145 AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQ 223 (228)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999754 5799999999999865 99999999999
Q ss_pred EE
Q 048654 395 LH 396 (723)
Q Consensus 395 i~ 396 (723)
++
T Consensus 224 i~ 225 (228)
T PRK10584 224 LQ 225 (228)
T ss_pred EE
Confidence 85
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=302.97 Aligned_cols=223 Identities=20% Similarity=0.327 Sum_probs=172.0
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
..+.++|+.|+|+.+.|+++|||+|++||++||+|||||||||.+.++.|+.. |++|.|.+.+.++...+....
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~R---- 76 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKR---- 76 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHH----
Confidence 35889999999999999999999999999999999999999999999999865 456778888877765432211
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
-+--++++++-... +....+.+++..+.+....- ...+.+.+++.+|+.|++. +..+.+..+||
T Consensus 77 --------ArlGigYLpQE~SI------Fr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLS 141 (243)
T COG1137 77 --------ARLGIGYLPQEASI------FRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLS 141 (243)
T ss_pred --------hhcCcccccccchH------hhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccc
Confidence 11122333221110 11223344444444432211 1123345678999999997 46689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR---WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~---~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
||||+|+.|||||+.+|++|||||||+|.||-++..++.++.. .+..|+++.|+..+...+|||.++|.+|++. ..
T Consensus 142 GGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~ 220 (243)
T COG1137 142 GGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AE 220 (243)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ec
Confidence 9999999999999999999999999999999988877776654 4789999999999999999999999999996 46
Q ss_pred CChhhHHhh
Q 048654 400 GNFDDFESG 408 (723)
Q Consensus 400 g~~~~~~~~ 408 (723)
|+++++..+
T Consensus 221 G~p~ei~~n 229 (243)
T COG1137 221 GSPEEIVNN 229 (243)
T ss_pred CCHHHHhcC
Confidence 998887654
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=316.47 Aligned_cols=222 Identities=23% Similarity=0.346 Sum_probs=162.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..|.+ ..|+|.+.+..+.......
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~--- 80 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP--- 80 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH---
Confidence 5899999999999999999999999999999999999999999999999876654 3678877766543211000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
..++..++++.+.... .....+.+++..... .... ......+++.+++..+++.. ...+++
T Consensus 81 --------~~~~~~i~~~~q~~~~------~~~~t~~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 145 (252)
T PRK14272 81 --------VAMRRRVGMVFQKPNP------FPTMSVFDNVVAGLK-LAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP 145 (252)
T ss_pred --------HHhhceeEEEeccCcc------CcCCCHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC
Confidence 0112223333221110 001122233321111 1111 12233456677777776531 234688
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|++
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14272 146 ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876 47999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+.+++
T Consensus 226 ~~-~~~~~~~ 234 (252)
T PRK14272 226 VE-HGPTDQL 234 (252)
T ss_pred EE-eCCHHHH
Confidence 64 5666554
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=316.65 Aligned_cols=208 Identities=24% Similarity=0.335 Sum_probs=162.5
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc---------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK--------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~--------- 559 (723)
++|+++|+++.|+. ..+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 3 NIISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred ceEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 57999999999975 358999999999999999999999999999999999997 47999987653
Q ss_pred ----eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 ----~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|...- ..++.++... ................+..+++.+++.. ....+++.+|||||||||+||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAY-GLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 137889887421 1233333211 1111110000001245677888899842 122456789999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+|| +|++|++|+++. .|+.+++
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISD-----QTAFLMNGDLIE-AGPTEEM 233 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcC-----EEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999887 4689999999999999995 999999999975 4777665
Q ss_pred H
Q 048654 710 K 710 (723)
Q Consensus 710 ~ 710 (723)
.
T Consensus 234 ~ 234 (251)
T PRK14251 234 F 234 (251)
T ss_pred H
Confidence 3
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=299.35 Aligned_cols=213 Identities=27% Similarity=0.405 Sum_probs=167.8
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~ig 563 (723)
||+++|++++..++ .+|++|||++.+||+++|+||||||||||||.|+|.+.|++|++.+++.. ..+
T Consensus 1 mi~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 68999999999765 48999999999999999999999999999999999999999999988742 356
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCC---cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc----
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGL---SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS---- 636 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~---- 636 (723)
.++|+..-.|.+.-..+.. +...+...+. .+.+.++++|...++.+... +.+.+|||||||||.|||+|++
T Consensus 79 VlpQ~s~laFpFtv~eVV~-mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-R~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQ-MGRIPHRSGREPEEDERIAAQALAATDLSGLAG-RDYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred hcccCcccccceEHHHHHH-hcccccccCCCchhhHHHHHHHHHHcChhhhhc-cchhhcCchHHHHHHHHHHHHHccCC
Confidence 7788643222221111111 1222322221 23344788999999987654 5668999999999999999976
Q ss_pred --CCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH-HH
Q 048654 637 --KPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE-YK 710 (723)
Q Consensus 637 --~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~-~~ 710 (723)
++.+|+|||||+.||+..+..++++.+++. +.|++|-||++++..||| ||++|.+|+++. .|++++ +.
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaD-----rivll~~Grv~a-~g~p~~vlt 230 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYAD-----RIVLLHQGRVIA-SGSPQDVLT 230 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhh-----eeeeeeCCeEee-cCCHHHhcC
Confidence 345999999999999999999999999984 579999999999999995 999999999985 688766 44
Q ss_pred HHHHHHH
Q 048654 711 EDLQREI 717 (723)
Q Consensus 711 ~~~~~~~ 717 (723)
.+.++.+
T Consensus 231 ~Etl~~v 237 (259)
T COG4559 231 DETLERV 237 (259)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=319.65 Aligned_cols=219 Identities=26% Similarity=0.336 Sum_probs=162.0
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..| ..|.|.+.+..+......
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~------ 81 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPLESWSSK------ 81 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEehhhCCHH------
Confidence 469999999999989999999999999999999999999999999999998654 456676666543211111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHH-Hh--cCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL-QI--LGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
.++..++++.+.... .....+.+++....... .. ........++..+++.+|+.. ..++++.+
T Consensus 82 -------~~~~~i~~v~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 147 (265)
T PRK10575 82 -------AFARKVAYLPQQLPA------AEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-LAHRLVDS 147 (265)
T ss_pred -------HHhhheEEeccCCCC------CCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCccc
Confidence 112223333221100 00112222221110000 00 011233567889999999964 45789999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+|||+++++..+||+|++|++|+++
T Consensus 148 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999999998888754 579999999999999999999999999996
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
..|+.+++
T Consensus 228 -~~~~~~~~ 235 (265)
T PRK10575 228 -AQGTPAEL 235 (265)
T ss_pred -EecCHHHh
Confidence 44665544
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=318.47 Aligned_cols=217 Identities=21% Similarity=0.232 Sum_probs=159.8
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++|++++|+++++|+++||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+..+...+...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~----- 76 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDITDWQTAK----- 76 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEecCCCCHHH-----
Confidence 469999999999988999999999999999999999999999999999998755 4566777666543221110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-CCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL-GFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LS 322 (723)
..+..++++.+.... .....+.+++.... ..........++.++++.+ ++.. ..++++.+||
T Consensus 77 -------~~~~~i~~~~q~~~~------~~~~tv~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LS 139 (237)
T PRK11614 77 -------IMREAVAIVPEGRRV------FSRMTVEENLAMGG---FFAERDQFQERIKWVYELFPRLHE-RRIQRAGTMS 139 (237)
T ss_pred -------HHHhCEEEeccCccc------CCCCcHHHHHHHhh---hccChhHHHHHHHHHHHHHHHHHH-HHhCchhhCC
Confidence 011112222221100 00112222221110 0011122344567778877 4653 3467899999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
|||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||++|||++++..+||++++|++|+++ +.
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~ 218 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LE 218 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-ee
Confidence 99999999999999999999999999999999999999988754 679999999999999999999999999996 45
Q ss_pred CChhhH
Q 048654 400 GNFDDF 405 (723)
Q Consensus 400 g~~~~~ 405 (723)
|+.+++
T Consensus 219 ~~~~~~ 224 (237)
T PRK11614 219 DTGDAL 224 (237)
T ss_pred CCHHHH
Confidence 776655
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=313.16 Aligned_cols=193 Identities=28% Similarity=0.440 Sum_probs=155.7
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
+++|+++||++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CceEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 4689999999999753 5899999999999999999999999999999999999999999988763 24
Q ss_pred EEEEccccccccCccccHHHHHH---hhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLL---RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
++|++|... .+ ..+....+. ..... ......+.++++.+++......+++.+|||||+|||+|||||+.+|
T Consensus 83 i~~~~q~~~-l~--~~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 83 VSYCAQTPT-LF--GDTVYDNLIFPWQIRNQ---QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred cEEEecccc-cc--cccHHHHHHhHHhhcCC---ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 789998742 11 113222221 11111 1123457789999999643334678999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEE--CCeE
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVE--NGTV 699 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~--~G~i 699 (723)
+||||||||+|||+.++..+.++|.++ +.|||+||||++++. .|| ++++|+ .|+|
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d-----~i~~l~~~~~~~ 217 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HAD-----KVITLQPHAGEM 217 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCC-----EEEEEecccchH
Confidence 999999999999999999999999876 458999999999996 684 999996 4554
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=319.23 Aligned_cols=221 Identities=24% Similarity=0.342 Sum_probs=164.0
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+..+ ..|+|.+.+..+.......
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~----- 73 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYDKKSL----- 73 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECccccchH-----
Confidence 378999999996 46799999999999999999999999999999999998654 4567777666543111100
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
..++..++++.+.... ......+.+++...... ..........++.++++.+|+.. ..++++.+|||
T Consensus 74 ------~~~~~~i~~v~q~~~~-----~~~~~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~ 140 (275)
T PRK13639 74 ------LEVRKTVGIVFQNPDD-----QLFAPTVEEDVAFGPLN-LGLSKEEVEKRVKEALKAVGMEG-FENKPPHHLSG 140 (275)
T ss_pred ------HHHHhheEEEeeChhh-----hhccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCch-hhcCChhhCCH
Confidence 0112233333221100 00011222322211111 11222334567889999999964 55799999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||+||++|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 141 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g 219 (275)
T PRK13639 141 GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EG 219 (275)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eC
Confidence 9999999999999999999999999999999999999999865 5799999999999999999999999999975 47
Q ss_pred ChhhHH
Q 048654 401 NFDDFE 406 (723)
Q Consensus 401 ~~~~~~ 406 (723)
+.+++.
T Consensus 220 ~~~~~~ 225 (275)
T PRK13639 220 TPKEVF 225 (275)
T ss_pred CHHHHh
Confidence 776653
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=330.91 Aligned_cols=197 Identities=27% Similarity=0.360 Sum_probs=161.5
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------- 559 (723)
||++ ||+++|++. .+ |+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 4777 999999752 23 899999999999999999999999999999999999999987552
Q ss_pred eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 560 LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 560 ~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
..++|++|... ..+++.++.. + .... .....+.++++.+||.... ++++.+|||||||||+|||||+.+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~-~---~~~~----~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLR-Y---GMAK----SMVAQFDKIVALLGIEPLL-DRYPGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHH-h---hhhh----hhHHHHHHHHHHcCCchhh-hCCcccCCHHHHHHHHHHHHHHcC
Confidence 24889999742 2233333321 1 1111 1245688899999997554 466799999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++..
T Consensus 147 p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~i~~ 218 (352)
T PRK11144 147 PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLAD-----RVVVLEQGKVKA-FGPLEEVWA 218 (352)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC-----EEEEEeCCEEEE-ecCHHHHHh
Confidence 9999999999999999999999998875 3589999999999999995 999999999975 578877644
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=316.27 Aligned_cols=209 Identities=25% Similarity=0.346 Sum_probs=163.7
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc---------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK--------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~--------- 559 (723)
++|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 47999999999975 3589999999999999999999999999999999999984 8999987652
Q ss_pred ----eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 ----~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|.... ..++.++... ................+..+++.+++... ...+++.+|||||+|||+||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 158 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAF-GPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHH-HHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence 248899986421 1222222211 11111100000122346778888888532 23467789999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| +|++|++|+++. .|+++++
T Consensus 159 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~ 232 (250)
T PRK14262 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIAD-----YIAFMYRGELIE-YGPTREI 232 (250)
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999999999999998874 689999999999999995 999999999974 5787776
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 53
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=322.46 Aligned_cols=210 Identities=26% Similarity=0.304 Sum_probs=163.8
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~------- 559 (723)
+.++|+++||++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 36 ~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 56789999999999753 48999999999999999999999999999999999864 49999987652
Q ss_pred ------eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHH
Q 048654 560 ------LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 560 ------~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~ 629 (723)
..++|++|+..-. .++.++.. +....+.........+.+..+++.+++.. ....+++.+|||||||||+
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIA-YGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHH-hHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 2488999874211 12222221 11111110000011345667888888742 2224567899999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| ++++|++|+++. .|+++
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d-----~i~~L~~G~i~~-~g~~~ 266 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSD-----YTMFFYEGVLVE-HAPTA 266 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHH
Confidence 9999999999999999999999999999999999874 489999999999999995 999999999974 57877
Q ss_pred HHH
Q 048654 708 EYK 710 (723)
Q Consensus 708 ~~~ 710 (723)
++.
T Consensus 267 ~~~ 269 (286)
T PRK14275 267 QLF 269 (286)
T ss_pred HHH
Confidence 764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=292.87 Aligned_cols=215 Identities=22% Similarity=0.307 Sum_probs=159.5
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|.+++|+++|+..+. .++++|+.||+++|+|||||||||||++|+|+..| .+|.|.+.+++......... -++
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~R--PVS 74 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAER--PVS 74 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccC--Chh
Confidence 3678899999987664 67899999999999999999999999999999765 55666777777654332110 011
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...+...++..+...+|..+. ... ...-....+++++.++.++|+.. ..+|.+.+||||
T Consensus 75 mlFQEnNLFaHLtV~qNigLG-------------------l~P-~LkL~a~~r~~v~~aa~~vGl~~-~~~RLP~~LSGG 133 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLG-------------------LSP-GLKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGG 133 (231)
T ss_pred hhhhccccchhhhhhhhhccc-------------------CCc-ccccCHHHHHHHHHHHHHhChhh-HhhhCccccCch
Confidence 101111122222221211100 000 00002445678999999999975 457999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||+|+++-+||||||||++|||.-+..+..++.++ +.|+|||||.++.+..++++++++++|+|. |.|
T Consensus 134 qRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g 212 (231)
T COG3840 134 QRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQG 212 (231)
T ss_pred HHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eec
Confidence 999999999999999999999999999999998888877644 579999999999999999999999999996 668
Q ss_pred ChhhHHh
Q 048654 401 NFDDFES 407 (723)
Q Consensus 401 ~~~~~~~ 407 (723)
...++..
T Consensus 213 ~~~~~~~ 219 (231)
T COG3840 213 STQELLS 219 (231)
T ss_pred cHHHHhc
Confidence 7776644
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=312.27 Aligned_cols=203 Identities=27% Similarity=0.372 Sum_probs=150.6
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhH
Q 048654 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHE 247 (723)
Q Consensus 168 l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 247 (723)
++||+++|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.++.+.
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--------------- 64 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--------------- 64 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH---------------
Confidence 68999999988999999999999999999999999999999999998755 4556665543321
Q ss_pred HHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHh---cCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 248 ELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI---LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 248 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.++..++++.+..... ......+.+++......... ........++.++++.+|+.. ..++++.+||||
T Consensus 65 ---~~~~~i~~v~q~~~~~----~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG 136 (213)
T cd03235 65 ---KERKRIGYVPQRRSID----RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-LADRQIGELSGG 136 (213)
T ss_pred ---HHHhheEEeccccccc----cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-HHhCCcccCCHH
Confidence 0112233332211000 00001222222211100000 011234567889999999964 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|.+
T Consensus 137 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 137 QQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 999999999999999999999999999999999999999865 47999999999999999999999998743
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=319.40 Aligned_cols=219 Identities=25% Similarity=0.292 Sum_probs=161.2
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++||++.|+ ++++|+||||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.+..+......
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~------ 72 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTGDFSKL------ 72 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECCccccH------
Confidence 378999999995 57799999999999999999999999999999999998654 556777766654321110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
..+...++++.+.... ......+.+++.... ............++.++++.+|+.. ..++++..|||
T Consensus 73 ------~~~~~~i~~v~q~~~~-----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~ 139 (274)
T PRK13644 73 ------QGIRKLVGIVFQNPET-----QFVGRTVEEDLAFGP-ENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSG 139 (274)
T ss_pred ------HHHHhheEEEEEChhh-----hcccchHHHHHHhhH-HHcCCCHHHHHHHHHHHHHHCCCHH-HhcCCcccCCH
Confidence 0111222322221000 000112222222111 1111223344567889999999964 45789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||++|||++++. .||+|++|++|+++ +.|
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g 217 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEG 217 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EEC
Confidence 9999999999999999999999999999999999999998754 579999999999995 69999999999996 457
Q ss_pred ChhhHH
Q 048654 401 NFDDFE 406 (723)
Q Consensus 401 ~~~~~~ 406 (723)
+.+++.
T Consensus 218 ~~~~~~ 223 (274)
T PRK13644 218 EPENVL 223 (274)
T ss_pred CHHHHh
Confidence 766653
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=312.37 Aligned_cols=205 Identities=32% Similarity=0.424 Sum_probs=164.3
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
|.++|++++|++. .+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVF 78 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEe
Confidence 4689999999753 5899999999999999999999999999999999999999999988653 3588999
Q ss_pred ccccc--ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFVD--LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|.... .+++.++.. +...... .........+..+++.+|+..... +.+..|||||+|||+|||||+.+|+|||||
T Consensus 79 q~~~~~~~~t~~~nl~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 79 QNYALFPHLTVFENIA-FGLRLKK-LPKAEIKERVAEALDLVQLEGYAN-RKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred cccccCCCCcHHHHHH-HHHHhcC-CCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 87421 223333221 1111111 000112345678899999975544 567899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 645 EPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||+|||+.++..+.++|.++ +.|||++|||++++..+|| ++++|++|+++. .|+.+++..
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d-----~i~~l~~G~~~~-~~~~~~~~~ 220 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSD-----RIAVMNKGKIQQ-IGTPEEIYE 220 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC-----EEEEEECCEEEe-cCCHHHHHh
Confidence 999999999999999999876 4699999999999999995 999999999975 577766544
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=319.38 Aligned_cols=210 Identities=22% Similarity=0.352 Sum_probs=164.1
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~-------- 559 (723)
.++|+++||++.|++ ..+|+||||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 19 ~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 19 APAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred CcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 568999999999975 3589999999999999999999999999999999999986 6999987652
Q ss_pred ----eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 ----~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|..... .++.++.. .................+..+++.+++... ...+.+.+|||||+|||+||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVL-AGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHH-HHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 2478999874211 22322211 111111100000112345678889998642 12356789999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|+|+.+|+||||||||++||+.++..|.+.|.++ ..|||+||||++++..+|| ++++|++|+|+. .|+++++
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d-----ri~~l~~G~i~~-~g~~~~~ 249 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISD-----RAALFFDGRLVE-EGPTEQL 249 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999887 3699999999999999995 999999999975 4777766
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
.+
T Consensus 250 ~~ 251 (276)
T PRK14271 250 FS 251 (276)
T ss_pred Hh
Confidence 43
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=317.82 Aligned_cols=225 Identities=22% Similarity=0.325 Sum_probs=162.8
Q ss_pred cceEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCC
Q 048654 164 KDITIDNFSVAAR---------GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234 (723)
Q Consensus 164 ~~I~l~nls~~y~---------~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~ 234 (723)
++|+++||++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+..| .+|+|.+.+..+...
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~~~ 79 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKL 79 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccc
Confidence 3589999999997 47899999999999999999999999999999999998655 456676666544322
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc
Q 048654 235 DRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
.... ...++..++++.+...... .....+.+.+......+..........++.++++.+|+.....
T Consensus 80 ~~~~----------~~~~~~~i~~v~q~~~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 145 (268)
T PRK10419 80 NRAQ----------RKAFRRDIQMVFQDSISAV----NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVL 145 (268)
T ss_pred ChhH----------HHHHHhcEEEEEcChhhcc----CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHh
Confidence 1110 0112222333322110000 0001112222111111111222334567899999999964455
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+|||+++++..+||+|++|
T Consensus 146 ~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 146 DKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred hCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 7899999999999999999999999999999999999999999998888754 579999999999999999999999
Q ss_pred eCCEEEEecCChhhH
Q 048654 391 HDQKLHFYRGNFDDF 405 (723)
Q Consensus 391 ~~G~i~~~~g~~~~~ 405 (723)
++|+++. .|+.+++
T Consensus 226 ~~G~i~~-~g~~~~~ 239 (268)
T PRK10419 226 DNGQIVE-TQPVGDK 239 (268)
T ss_pred ECCEEee-eCChhhc
Confidence 9999964 4665443
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=317.35 Aligned_cols=217 Identities=29% Similarity=0.365 Sum_probs=160.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|+++.|+++.+|+|+||+|++|++++|+|+|||||||||++|+|+..| ..|+|.+.+..+......
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~~~~~~------- 72 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLADWSPA------- 72 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcccCCHH-------
Confidence 48999999999999999999999999999999999999999999999998655 456666666544221111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.+...++++.+.... .....+.+++...... ..........++.++++.+|+.. ..++.+.+||||
T Consensus 73 ------~~~~~i~~~~q~~~~------~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG 138 (258)
T PRK13548 73 ------ELARRRAVLPQHSSL------SFPFTVEEVVAMGRAP-HGLSRAEDDALVAAALAQVDLAH-LAGRDYPQLSGG 138 (258)
T ss_pred ------HhhhheEEEccCCcC------CCCCCHHHHHHhhhcc-cCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHH
Confidence 011122222221100 0011222222211100 00112234457889999999964 457899999999
Q ss_pred HHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 325 WRMRISLARALF------VQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 325 qrQRvaLArAL~------~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
|||||+|||||+ .+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 139 e~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 218 (258)
T PRK13548 139 EQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGR 218 (258)
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCE
Confidence 999999999999 599999999999999999999999888754 5799999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++ +.|+++++
T Consensus 219 i~-~~~~~~~~ 228 (258)
T PRK13548 219 LV-ADGTPAEV 228 (258)
T ss_pred EE-eeCCHHHH
Confidence 96 45666554
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=315.71 Aligned_cols=205 Identities=25% Similarity=0.321 Sum_probs=162.7
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC---CCcceEEECCc-----------e
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS---PTEGEVRRSQK-----------L 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~---p~~G~I~~~~~-----------~ 560 (723)
+++++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++. .
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 5789999999975 358999999999999999999999999999999999974 79999998763 2
Q ss_pred eEEEEccccccccCccccHHHHHH---hhCCCC-CCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHHHHH
Q 048654 561 RIGRYSQHFVDLLTMEETPVSYLL---RLHPDQ-EGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 561 ~ig~~~q~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~lAra 633 (723)
.++|++|.+.- +. .++...+. ...... ........+..+++.+++.. ....+++.+|||||+|||+||||
T Consensus 80 ~i~~~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 80 NVGMVFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hEEEEecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 48999997421 11 23222221 111100 00112345678899999953 12345678999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|| +|++|++|+++. .|+.+++.
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~ 229 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVAD-----YTAFFHLGELIE-FGESKEFF 229 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCc-----EEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999999999886 4699999999999999995 999999999985 47777654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=321.99 Aligned_cols=224 Identities=23% Similarity=0.274 Sum_probs=160.6
Q ss_pred ceEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAARGK-----ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~~-----~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.|+++|++++|+++ ++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~- 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAIPANLKKI- 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccccccc-
Confidence 58999999999864 499999999999999999999999999999999998755 4566666655442100000
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
.....++..++++.+.... ......+.+++.... ............++.++++.+++.....++++.
T Consensus 83 -------~~~~~~~~~i~~v~q~~~~-----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~ 149 (289)
T PRK13645 83 -------KEVKRLRKEIGLVFQFPEY-----QLFQETIEKDIAFGP-VNLGENKQEAYKKVPELLKLVQLPEDYVKRSPF 149 (289)
T ss_pred -------ccHHHHhccEEEEEeCcch-----hhhhhHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCChhHhcCChh
Confidence 0000112222222221000 000112222222111 111112233345678899999995345578999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 150 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 229 (289)
T PRK13645 150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229 (289)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999988754 57999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+.+++
T Consensus 230 ~~-~g~~~~~ 238 (289)
T PRK13645 230 IS-IGSPFEI 238 (289)
T ss_pred EE-eCCHHHH
Confidence 74 4666554
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=317.80 Aligned_cols=210 Identities=22% Similarity=0.253 Sum_probs=164.6
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~------- 559 (723)
..++|+++||+++|++ ..+|+||||+|.+||+++|+|||||||||||++|+|+++ |++|+|.+++.
T Consensus 17 ~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 17 EEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 3568999999999975 358999999999999999999999999999999999996 58999987652
Q ss_pred ------eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHH
Q 048654 560 ------LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 560 ------~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~ 629 (723)
..++|++|...-. .++.++.... ...............+.++++.+++.. ....+++.+|||||+|||+
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFA-LERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhH-HHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 2478999864211 2332322111 111110000012345677889998842 2234677999999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||||+.+|++|||||||+|||+.+...+.++|.++. .+||+||||++++..+|| +|++|++|+++. .|+++
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~ 247 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASD-----YTAFFYLGDLIE-YDKTR 247 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcC-----EEEEEECCEEEE-eCCHH
Confidence 9999999999999999999999999999999998874 589999999999999995 999999999985 47777
Q ss_pred HHH
Q 048654 708 EYK 710 (723)
Q Consensus 708 ~~~ 710 (723)
++.
T Consensus 248 ~~~ 250 (267)
T PRK14237 248 NIF 250 (267)
T ss_pred HHh
Confidence 664
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=307.92 Aligned_cols=194 Identities=28% Similarity=0.375 Sum_probs=156.4
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
++++||++.|+. .+.++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 468999999963 467999999999999999999999999999999999999999998763 2488999
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|... ..+++.++.... .... ..........+.++++.+|+.... ++++.+|||||+|||+|||||+.+|+|||||
T Consensus 77 q~~~~~~~~t~~en~~~~-~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLG-LHPG-LKLNAEQQEKVVDAAQQVGIADYL-DRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred ccCccCCCCcHHHHHHhH-hhcc-CCccHHHHHHHHHHHHHcCcHHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8742 122333332111 1111 000001234577899999997544 4677999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 645 EPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
|||++||+.++..+.++|.++ +.|||+||||.+++..+|| ++++|++|+++.
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d-----~v~~l~~g~i~~ 209 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIAS-----QIAVVSQGKIKV 209 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC-----eEEEEECCeEEE
Confidence 999999999999999999875 3589999999999999985 999999999975
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=356.76 Aligned_cols=212 Identities=21% Similarity=0.336 Sum_probs=168.8
Q ss_pred CCCeEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------
Q 048654 492 TPPLLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------- 559 (723)
.+++|+++|+++.|+.. ...+|+||||+|.+|+++||+||||||||||+++|+|+++|++|.|.+.+.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 35799999999999632 235899999999999999999999999999999999999999999976441
Q ss_pred ---------------eeEEEEcccc----ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC--CCCcCCCC
Q 048654 560 ---------------LRIGRYSQHF----VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS--HNHLTPIA 618 (723)
Q Consensus 560 ---------------~~ig~~~q~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~--~~~~~~i~ 618 (723)
..+||++|++ ...+++.++.... +............+++.++|+.|||.. ...++++.
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAES-IRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 2489999974 2234444443221 111111100112356788999999963 12346789
Q ss_pred CCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEE
Q 048654 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVV 694 (723)
Q Consensus 619 ~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl 694 (723)
+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+|| ||++|
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~ad-----ri~vl 242 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIAD-----RVLVM 242 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC-----EEEEe
Confidence 99999999999999999999999999999999999999999998875 3589999999999999995 99999
Q ss_pred ECCeEEecCCCHHHHH
Q 048654 695 ENGTVSRFPGTFEEYK 710 (723)
Q Consensus 695 ~~G~i~~~~g~~~~~~ 710 (723)
++|+|+. .|+++++.
T Consensus 243 ~~G~i~~-~g~~~~~~ 257 (623)
T PRK10261 243 YQGEAVE-TGSVEQIF 257 (623)
T ss_pred eCCeecc-cCCHHHhh
Confidence 9999974 67777663
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=319.53 Aligned_cols=230 Identities=20% Similarity=0.271 Sum_probs=167.3
Q ss_pred CCccccCCccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeee
Q 048654 155 GQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEV 231 (723)
Q Consensus 155 ~~~~~~~~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~ 231 (723)
|+.+.....++|+++||++.|+++++|+|+||+|.+|++++|+|+|||||||||++|+|+..+ .|..|.|.+.+..+
T Consensus 29 ~~~~~~~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i 108 (285)
T PRK14254 29 GDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV 108 (285)
T ss_pred CCccccCCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 443333355679999999999989999999999999999999999999999999999998653 25678887776654
Q ss_pred cCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc
Q 048654 232 VGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK 311 (723)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~ 311 (723)
...... ...++..++++.+.... . ...+.+++..... ..... .....++.++++.+|+..
T Consensus 109 ~~~~~~-----------~~~~~~~i~~v~q~~~l------~-~~tv~enl~~~~~-~~~~~-~~~~~~~~~~l~~~~l~~ 168 (285)
T PRK14254 109 YDADVD-----------PVALRRRIGMVFQKPNP------F-PKSIYDNVAYGLK-IQGYD-GDIDERVEESLRRAALWD 168 (285)
T ss_pred cccccc-----------hHhhhccEEEEecCCcc------C-cCCHHHHHHHHHH-HcCCc-HHHHHHHHHHHHHcCCCc
Confidence 311000 00112223333221110 0 0122222221111 11111 234567889999999842
Q ss_pred ---cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCE
Q 048654 312 ---EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTE 386 (723)
Q Consensus 312 ---~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~ 386 (723)
...++++.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+
T Consensus 169 ~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 169 EVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDK 248 (285)
T ss_pred hhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 2346889999999999999999999999999999999999999999999999876 46999999999999999999
Q ss_pred EE-EEeCCEEEEecCChhhH
Q 048654 387 II-HLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 387 Ii-~L~~G~i~~~~g~~~~~ 405 (723)
++ +|++|+++. .|+..++
T Consensus 249 i~v~l~~G~i~~-~g~~~~~ 267 (285)
T PRK14254 249 TAVFLTGGELVE-FDDTDKI 267 (285)
T ss_pred EEEEeeCCEEEE-eCCHHHH
Confidence 75 679999975 4665544
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=311.54 Aligned_cols=214 Identities=23% Similarity=0.320 Sum_probs=157.7
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++||++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~------- 71 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITKLPPHE------- 71 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHH-------
Confidence 5789999999989999999999999999999999999999999999998755 4566766665543221110
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC-CCccccCCCCCCCChH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLG-FTKEMQGRPTKSFSGG 324 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lg-l~~~~~~~~~~~LSGG 324 (723)
.....++++.+.... .....+.+++..... .... .....+.++++.++ +. ...++++.+||||
T Consensus 72 -----~~~~~i~~~~q~~~~------~~~~tv~~~l~~~~~---~~~~-~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G 135 (230)
T TIGR03410 72 -----RARAGIAYVPQGREI------FPRLTVEENLLTGLA---ALPR-RSRKIPDEIYELFPVLK-EMLGRRGGDLSGG 135 (230)
T ss_pred -----HHHhCeEEeccCCcc------cCCCcHHHHHHHHHH---hcCc-chHHHHHHHHHHHHhHH-HHhhCChhhCCHH
Confidence 011122333221110 011122232221111 1111 12334567787776 44 3457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+|||+++++..+||+|++|++|+++. .|
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~-~~ 214 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA-SG 214 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EC
Confidence 999999999999999999999999999999999999998764 5799999999999999999999999999964 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+++
T Consensus 215 ~~~~~ 219 (230)
T TIGR03410 215 AGDEL 219 (230)
T ss_pred CHHHc
Confidence 66554
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=331.38 Aligned_cols=213 Identities=22% Similarity=0.300 Sum_probs=162.1
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHH
Q 048654 173 VAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKL 252 (723)
Q Consensus 173 ~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l 252 (723)
+.|+++.+|+|+||+|++||+++|+|||||||||||++|+|+..| ..|+|.+.++++...+...+ ..+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~----------~~~ 68 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVEL----------REV 68 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHH----------HHH
Confidence 357889999999999999999999999999999999999998754 56777777776654322111 011
Q ss_pred -HHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHH
Q 048654 253 -REEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331 (723)
Q Consensus 253 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaL 331 (723)
+..++++.+.... .....+.+++..... +..+.......++.++|+.+||. ...++++.+|||||||||+|
T Consensus 69 rr~~i~~v~Q~~~l------~~~~TV~eNi~~~~~-~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~l 140 (363)
T TIGR01186 69 RRKKIGMVFQQFAL------FPHMTILQNTSLGPE-LLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGL 140 (363)
T ss_pred HhCcEEEEECCCcC------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 1233333322111 111233344432221 11223345567899999999996 45689999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChhhHH
Q 048654 332 ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 332 ArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~~~~ 406 (723)
||||+.+|+||||||||++||+.++.++++.|.++ ++|||+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 141 ARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei~ 218 (363)
T TIGR01186 141 ARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEIL 218 (363)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHHH
Confidence 99999999999999999999999999999988654 6799999999999999999999999999974 47776653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=315.75 Aligned_cols=207 Identities=26% Similarity=0.374 Sum_probs=161.5
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----cceEEECCc----------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-----EGEVRRSQK---------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-----~G~I~~~~~---------- 559 (723)
+|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 7899999999975 35899999999999999999999999999999999999874 899987652
Q ss_pred ---eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCc-HHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLS-KQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 ---~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|+.. ..+++.++.... .... ...... ..+.+..++..+++.. ....+++.+|||||+|||+|
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~-~~~~-~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAG-LKLA-GIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCI 159 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHH-HHhc-CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHH
Confidence 24889998742 222333332111 1111 100000 1233556667776532 12346789999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||+|+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++. .|++++
T Consensus 160 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~ 233 (252)
T PRK14272 160 ARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSD-----TTSFFLVGDLVE-HGPTDQ 233 (252)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999998875 689999999999999995 999999999974 578777
Q ss_pred HHH
Q 048654 709 YKE 711 (723)
Q Consensus 709 ~~~ 711 (723)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14272 234 LFT 236 (252)
T ss_pred HHh
Confidence 643
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=319.50 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=162.0
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~------- 559 (723)
+.++|+++|+++.|++. .+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 21 ~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 21 KKVVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CceEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 46799999999999753 58999999999999999999999999999999999997 69999987652
Q ss_pred ------eeEEEEccccccc-cCccccHHHHHHhhCCCCCCC-cHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHH
Q 048654 560 ------LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGL-SKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 560 ------~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv 628 (723)
..++|++|...-. .++.++.. +..... ..... .....+..+++.+++.. .....++.+|||||||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~-~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVT-YGPKIH-GIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHH-HHHHhc-CCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 2488999874211 12222211 111111 11000 01233566677775421 122356789999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
+|||+|+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| ++++|++|+++. .|+.
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d-----~i~~l~~G~i~~-~g~~ 250 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISD-----KTAFFLNGYVNE-YDDT 250 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCC-----EEEEEECCEEEE-eCCH
Confidence 99999999999999999999999999999999998874 689999999999999995 999999999975 4777
Q ss_pred HHHH
Q 048654 707 EEYK 710 (723)
Q Consensus 707 ~~~~ 710 (723)
+++.
T Consensus 251 ~~~~ 254 (271)
T PRK14238 251 DKIF 254 (271)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=332.88 Aligned_cols=216 Identities=24% Similarity=0.312 Sum_probs=157.2
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHH
Q 048654 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEE 248 (723)
Q Consensus 169 ~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 248 (723)
.++.+.|+...+|+|+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.+.++...+...+
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l--------- 100 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAEL--------- 100 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHH---------
Confidence 3333334434489999999999999999999999999999999998765 45677777766543221111
Q ss_pred HHHH-HHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHH
Q 048654 249 LVKL-REEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRM 327 (723)
Q Consensus 249 ~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQ 327 (723)
..+ +..++++.+.... .....+.+++..... ...+......+++.++|+.+||.. ..++++.+|||||||
T Consensus 101 -~~~~~~~igyv~Q~~~l------~~~~Tv~enl~~~~~-~~~~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~Q 171 (400)
T PRK10070 101 -REVRRKKIAMVFQSFAL------MPHMTVLDNTAFGME-LAGINAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQ 171 (400)
T ss_pred -HHHHhCCEEEEECCCcC------CCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHH
Confidence 011 1123333222111 111223333322211 112223344567889999999974 457999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChh
Q 048654 328 RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFD 403 (723)
Q Consensus 328 RvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~ 403 (723)
||+|||||+.+|+||||||||++||+.++..|.++|.++ ++|||+||||++++..+||+|++|++|+++. .|+.+
T Consensus 172 Rv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~-~g~~~ 250 (400)
T PRK10070 172 RVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ-VGTPD 250 (400)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe-cCCHH
Confidence 999999999999999999999999999999999988754 5799999999999999999999999999964 47665
Q ss_pred hH
Q 048654 404 DF 405 (723)
Q Consensus 404 ~~ 405 (723)
++
T Consensus 251 ~l 252 (400)
T PRK10070 251 EI 252 (400)
T ss_pred HH
Confidence 54
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=318.29 Aligned_cols=208 Identities=24% Similarity=0.293 Sum_probs=163.5
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~------- 559 (723)
.+++|+++||++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 10 ~~~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 35689999999999753 58999999999999999999999999999999999987 68999987653
Q ss_pred ------eeEEEEccccccccCccccHHHHHHhhCCCCCCC--cHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHH
Q 048654 560 ------LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL--SKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 560 ------~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv 628 (723)
..++|++|+.. .+. .++.+.+. +.....+. ...+.+..+++.+++.. ...++++.+|||||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~-l~~--~tv~enl~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPN-PFP--KSIYENIA-FGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred CHHHHhhceEEEccCCc-cch--hhHHHHHh-hhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 24899998742 111 12222221 11000111 12345677888888742 223467789999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEEC----------
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVEN---------- 696 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~---------- 696 (723)
+|||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| ++++|++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d-----~i~~l~~~~~~~~~~g~ 238 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSD-----MTAFFNAEEVEGGSGGK 238 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC-----EEEEEeccccccccccc
Confidence 99999999999999999999999999999999998874 589999999999999995 9999996
Q ss_pred -CeEEecCCCHHHHHH
Q 048654 697 -GTVSRFPGTFEEYKE 711 (723)
Q Consensus 697 -G~i~~~~g~~~~~~~ 711 (723)
|+++. .|+++++.+
T Consensus 239 ~g~~~~-~~~~~~~~~ 253 (269)
T PRK14259 239 VGYLVE-FNETKKIFN 253 (269)
T ss_pred cceEEE-eCCHHHHHh
Confidence 56764 578777643
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=315.54 Aligned_cols=219 Identities=21% Similarity=0.298 Sum_probs=160.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|+++.|+++++|+++||+|.+|++++|+||||||||||+++|+|+..| ..|.|.+.+..+.........
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~---- 78 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHIEGLPGHQIA---- 78 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEECCCCCHHHHH----
Confidence 59999999999999999999999999999999999999999999999998754 456677766654322211100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHH---------HHHh---cC--chHHHHHHHHHHHhCCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE---------KLQI---LG--SDAAEAQASKILAGLGFT 310 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~---~~--~~~~~~~~~~~L~~lgl~ 310 (723)
+..+.++.+.... .....+.+++..... .+.. .. ......++.++++.+|+.
T Consensus 79 --------~~~i~~~~q~~~~------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 144 (255)
T PRK11300 79 --------RMGVVRTFQHVRL------FREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL 144 (255)
T ss_pred --------hcCeEEeccCccc------CCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh
Confidence 0011111111000 001122222221100 0000 00 012335678899999996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCE
Q 048654 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTE 386 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~ 386 (723)
. ..++++.+|||||||||+|||||+.+|+||||||||++||+.++..|.++|.++ +.|||+|||+++++..+||+
T Consensus 145 ~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 145 E-HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred h-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 4 457999999999999999999999999999999999999999999999998754 57999999999999999999
Q ss_pred EEEEeCCEEEEecCChhhH
Q 048654 387 IIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 387 Ii~L~~G~i~~~~g~~~~~ 405 (723)
|++|++|+++ +.|+.+++
T Consensus 224 i~~l~~g~i~-~~~~~~~~ 241 (255)
T PRK11300 224 IYVVNQGTPL-ANGTPEEI 241 (255)
T ss_pred EEEEECCeEE-ecCCHHHH
Confidence 9999999996 45666554
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=309.77 Aligned_cols=190 Identities=29% Similarity=0.387 Sum_probs=152.5
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------e
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------------L 560 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------------~ 560 (723)
+.+ ||+++|++. . + ||||+|.+ ++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 2 ~~~-~l~~~~~~~--~-~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--T-L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--e-e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 344 899999863 2 3 99999999 999999999999999999999999999999987652 1
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.++|++|... ..+++.++.... ...+ . .......+.++++.+|+.... ++++.+|||||||||+|||||+.+|
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~-~~~~-~--~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFG-LKRK-R--NREDRISVDELLDLLGLDHLL-NRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHH-HhhC-C--HHHHHHHHHHHHHHcCCHhHh-hcCcccCCHHHHHHHHHHHHHhcCC
Confidence 4889998742 122333332111 1111 0 001234578899999997543 4677999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~ 212 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLAD-----RIVVMEDGRLQY 212 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcC-----EEEEEECCEEEe
Confidence 999999999999999999999999875 4589999999999999995 999999999964
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=349.63 Aligned_cols=206 Identities=24% Similarity=0.353 Sum_probs=165.1
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------ee
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ 561 (723)
++|+++|+++.|++ ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 58999999999975 35899999999999999999999999999999999999999999988752 24
Q ss_pred EEEEccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
++|++|.+. ..+++.++... ............ ....+.++++.+||.... ++++.+|||||||||+|||||+.
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFL-GREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-DKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhh-ccccccccCccCHHHHHHHHHHHHHHcCCCCCc-cCchhhCCHHHHHHHHHHHHHhc
Confidence 899999742 22233332211 000000000011 134577899999997654 46789999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~ 228 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICD-----DVTVFRDGQFIA-EREVADL 228 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEeCCEEEE-ecCcCcC
Confidence 99999999999999999999999988876 3589999999999999995 999999999974 4666554
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=315.28 Aligned_cols=217 Identities=30% Similarity=0.380 Sum_probs=162.1
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|+++.|+++++|+|+||+|.+|++++|+|+|||||||||++|+|+..| ..|+|.+.+..+.......
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~------- 72 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLHGLSRRA------- 72 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcccCCHHH-------
Confidence 6899999999999999999999999999999999999999999999998755 4566766665543221111
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHH---HhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL---QILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
++..++++.+.... .....+.+++....... ..........++.++++.+|+. ...++++.+||
T Consensus 73 ------~~~~i~~~~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS 139 (256)
T TIGR03873 73 ------RARRVALVEQDSDT------AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLS 139 (256)
T ss_pred ------HhhheEEecccCcc------CCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCC
Confidence 11122333221100 00112222222111000 0011223345788999999996 45579999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
|||+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++ ..
T Consensus 140 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~ 218 (256)
T TIGR03873 140 GGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AA 218 (256)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-Ee
Confidence 99999999999999999999999999999999999999999865 579999999999999999999999999997 45
Q ss_pred CChhhH
Q 048654 400 GNFDDF 405 (723)
Q Consensus 400 g~~~~~ 405 (723)
|+.+++
T Consensus 219 g~~~~~ 224 (256)
T TIGR03873 219 GPPREV 224 (256)
T ss_pred cCHHHh
Confidence 766554
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=320.65 Aligned_cols=218 Identities=25% Similarity=0.324 Sum_probs=161.3
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhh
Q 048654 167 TIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAH 246 (723)
Q Consensus 167 ~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 246 (723)
.++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+...+...+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~------- 96 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKEL------- 96 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhh-------
Confidence 567999999999999999999999999999999999999999999998654 45677776665432211100
Q ss_pred HHHHHH-HHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 247 EELVKL-REEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 247 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
..+ ...++++.+.... .....+.+++.... ............++.++++.+|+.. ..++++.+|||||
T Consensus 97 ---~~~~~~~i~~v~q~~~~------~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq 165 (269)
T cd03294 97 ---RELRRKKISMVFQSFAL------LPHRTVLENVAFGL-EVQGVPRAEREERAAEALELVGLEG-WEHKYPDELSGGM 165 (269)
T ss_pred ---hhhhcCcEEEEecCccc------CCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCHh-HhhCCcccCCHHH
Confidence 000 1122222221110 01112233322211 1111222334567889999999974 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
||||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+
T Consensus 166 ~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~ 244 (269)
T cd03294 166 QQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ-VGT 244 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCC
Confidence 99999999999999999999999999999999999988764 5799999999999999999999999999974 466
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+++
T Consensus 245 ~~~~ 248 (269)
T cd03294 245 PEEI 248 (269)
T ss_pred HHHH
Confidence 6554
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=349.22 Aligned_cols=207 Identities=27% Similarity=0.379 Sum_probs=166.8
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
.++|+++|++++|++. .+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 3 ~~~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 3 TPYISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred CceEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 4689999999999753 5899999999999999999999999999999999999999999988652 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCC------cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGL------SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
.++|++|+.. ..+++.++.... ........+. .....+.++|+.+||.... ++++.+|||||||||+|||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIG-RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-DEKVANLSISHKQMLEIAK 158 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhc-cccccccccccccCHHHHHHHHHHHHHHcCCCCCc-ccchhhCCHHHHHHHHHHH
Confidence 4899999742 222332221100 0000000010 1234577899999997544 5778999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++ +.|+++++
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d-----~v~~l~~G~i~-~~g~~~~~ 232 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICD-----RYTVMKDGSSV-CSGMVSDV 232 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEe-eecchhhC
Confidence 999999999999999999999999999999876 3689999999999999995 99999999996 56777765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=319.57 Aligned_cols=223 Identities=22% Similarity=0.291 Sum_probs=164.2
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC--CC-CCcEEEEEeeeeecCCChHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI--PV-PKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~--~~-~~~~~i~~~~q~~~~~~~~~~ 239 (723)
...|+++|++++|+++.+|+|+||+|.+|++++|+|+|||||||||++|+|+.. |. |..|.|.+.++.+......
T Consensus 37 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~-- 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD-- 114 (286)
T ss_pred ceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc--
Confidence 346999999999998899999999999999999999999999999999999743 21 3678887776654321100
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCC---ccccC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFT---KEMQG 315 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~---~~~~~ 315 (723)
...++..++++.+.... . ...+.+++.... ...... ......++.++++.+|+. ....+
T Consensus 115 ---------~~~~~~~i~~v~q~~~l------~-~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 115 ---------EVLLRKKIGMVFQKPNP------F-PKSIFDNIAYGP-RLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred ---------hHHhhhcEEEECCCCCC------C-ccCHHHHHHhHH-HhcCCCcHHHHHHHHHHHHHHhCCccchhhHhh
Confidence 00122233333222111 0 112233332111 111111 123345677888988873 12346
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 178 ~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G 257 (286)
T PRK14275 178 KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEG 257 (286)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999999876 469999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .|+..++
T Consensus 258 ~i~~-~g~~~~~ 268 (286)
T PRK14275 258 VLVE-HAPTAQL 268 (286)
T ss_pred EEEE-eCCHHHH
Confidence 9974 4666554
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=320.51 Aligned_cols=219 Identities=24% Similarity=0.337 Sum_probs=161.8
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
..|+++||+++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|.|.+.+..+.......
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~----- 78 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE----- 78 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEhhhCCHHH-----
Confidence 359999999999999999999999999999999999999999999999998654 4566776665543211111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHH-HHHHHhc--CchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAEL-YEKLQIL--GSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+...++++.+.... .....+.+.+... ....... .......++.++++.+|+.. ..++++.+
T Consensus 79 --------~~~~i~~v~q~~~~------~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 143 (265)
T PRK10253 79 --------VARRIGLLAQNATT------PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-LADQSVDT 143 (265)
T ss_pred --------HhhheEEeeccCcC------CCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCccc
Confidence 11122332221110 0011111221110 0000000 11233457889999999964 45799999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
||||||||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++
T Consensus 144 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999988764 579999999999999999999999999986
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+.+++
T Consensus 224 ~-~g~~~~~ 231 (265)
T PRK10253 224 A-QGAPKEI 231 (265)
T ss_pred E-eCCHHHH
Confidence 4 4665554
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=331.92 Aligned_cols=197 Identities=27% Similarity=0.360 Sum_probs=159.1
Q ss_pred EEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------eeEEE
Q 048654 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------------LRIGR 564 (723)
Q Consensus 500 ~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------------~~ig~ 564 (723)
||+++|++. .+ ++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999753 35 999999999999999999999999999999999999999987652 24789
Q ss_pred Eccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 565 YSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 565 ~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
++|+.. ..+++.++.. +...... .......+.++++.+||.... ++++.+|||||||||+|||||+.+|+|||
T Consensus 80 v~q~~~l~~~~tv~enl~-~~~~~~~---~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLR-YGMKRAR---PSERRISFERVIELLGIGHLL-GRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred EecCCccCCCCcHHHHHH-HHhhccC---hhHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 998742 2234443321 1111110 111234578899999997544 46779999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++..
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~~ 221 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLAD-----RVVVLEDGRVAA-AGPIAEVWA 221 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEEeCCEEEE-ECCHHHHhc
Confidence 99999999999999999999875 3589999999999999995 999999999974 578776643
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=314.64 Aligned_cols=207 Identities=25% Similarity=0.326 Sum_probs=161.5
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc----------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK---------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~---------- 559 (723)
+|+++||++.|++. .+|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 58899999999753 589999999999999999999999999999999999763 6999987652
Q ss_pred ---eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 560 ---~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~lAr 632 (723)
..++|++|...- ..++.++.... .............+.+.++++.+++.. ...++++.+|||||+|||+|||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 247899987421 12232222111 111110000012345677888888742 1234677999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|++|||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|++|+++. .|+.+++.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d-----~v~~l~~G~i~~-~~~~~~~~ 233 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISD-----KTAFFLNGEIVE-FGDTVDLF 233 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCC-----EEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999998874 589999999999999995 999999999975 47776654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=319.83 Aligned_cols=208 Identities=24% Similarity=0.353 Sum_probs=164.2
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~------- 559 (723)
++++|+++||++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 36 ~~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 36 GETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 5679999999999975 358999999999999999999999999999999999987 68999987652
Q ss_pred ------eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHH
Q 048654 560 ------LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 560 ------~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~ 629 (723)
..++|++|+.... .++.++.. +...... . .......+..+++.+++.. ....+++.+|||||||||+
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~-~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVA-YGLKIQG-Y-DGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHH-HHHHHcC-C-cHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 2478999874211 12222221 1111111 1 0112356788899999852 1234567899999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEE-EEECCeEEecCCCH
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIW-VVENGTVSRFPGTF 706 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~-vl~~G~i~~~~g~~ 706 (723)
|||||+.+|+||||||||+|||+.++..|.++|+++. .|||+||||++++..+|| |++ +|++|+|+. .|++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~d-----ri~v~l~~G~i~~-~g~~ 264 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISD-----KTAVFLTGGELVE-FDDT 264 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC-----EEEEEeeCCEEEE-eCCH
Confidence 9999999999999999999999999999999999883 689999999999999995 865 679999975 4777
Q ss_pred HHHH
Q 048654 707 EEYK 710 (723)
Q Consensus 707 ~~~~ 710 (723)
+++.
T Consensus 265 ~~~~ 268 (285)
T PRK14254 265 DKIF 268 (285)
T ss_pred HHHH
Confidence 6654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=312.71 Aligned_cols=202 Identities=27% Similarity=0.423 Sum_probs=156.7
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++|+++.|++....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 4689999999743346899999999999999999999999999999999999999999998763 24899
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHH---------HHHHHHhC--CCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA---------VRAKLGKF--GLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~L~~~--gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
++|+.. .+ ..++...+ ..... ... ... +..++..+ ++.... .+++.+|||||||||+||||
T Consensus 81 ~~q~~~-~~--~~tv~~nl-~~~~~--~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~LSgG~~qrv~lara 152 (237)
T cd03252 81 VLQENV-LF--NRSIRDNI-ALADP--GMS-MERVIEAAKLAGAHDFISELPEGYDTIV-GEQGAGLSGGQRQRIAIARA 152 (237)
T ss_pred EcCCch-hc--cchHHHHh-hccCC--CCC-HHHHHHHHHHcCcHHHHHhCcccccchh-hcCCCcCCHHHHHHHHHHHH
Confidence 999742 11 12322222 11111 111 111 12344444 444332 35678999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|++|||||||+|||+.++..+.+.|.++. .|||++|||++++. .| |+|++|++|+++. .|+++++..
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~-----d~v~~l~~G~i~~-~~~~~~~~~ 225 (237)
T cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NA-----DRIIVMEKGRIVE-QGSHDELLA 225 (237)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hC-----CEEEEEECCEEEE-EcCHHHHHh
Confidence 999999999999999999999999999998874 58999999999995 58 4999999999974 578777654
Q ss_pred H
Q 048654 712 D 712 (723)
Q Consensus 712 ~ 712 (723)
.
T Consensus 226 ~ 226 (237)
T cd03252 226 E 226 (237)
T ss_pred c
Confidence 3
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=313.76 Aligned_cols=209 Identities=24% Similarity=0.322 Sum_probs=162.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----cceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-----EGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-----~G~I~~~~~-------- 559 (723)
.++|+++||++.|+++ .+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 2 ~~~l~~~~l~~~~~~~--~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 2 DPKIKIRGVNFFYHKH--QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred CceEEEEEEEEEECCe--eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 3579999999999753 5899999999999999999999999999999999999997 699987542
Q ss_pred -----eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|..... .++.++.. +................+..++..+++.. ....+++.+|||||||||+|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVA-FGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHh-hHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 2488999974311 12222211 11111110000011234566778888742 12346678999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|++|||||||+|||+.++..+.++|.++. .|||+||||++++..+|| ++++|++|+++. .|++++
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~ 232 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASD-----WTGFLLTGDLVE-YGRTGE 232 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCC-----EEEEEeCCeEEE-eCCHHH
Confidence 999999999999999999999999999999998873 699999999999999995 999999999975 477776
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
+.
T Consensus 233 ~~ 234 (251)
T PRK14249 233 IF 234 (251)
T ss_pred HH
Confidence 64
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=348.70 Aligned_cols=211 Identities=24% Similarity=0.395 Sum_probs=166.1
Q ss_pred CCeEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc------
Q 048654 493 PPLLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK------ 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~------ 559 (723)
.++|+++|+++.|++. ...+|++|||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 4589999999999631 23589999999999999999999999999999999999987 7999987652
Q ss_pred ---------eeEEEEcccccc----ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC--CCcCCCCCCCHHH
Q 048654 560 ---------LRIGRYSQHFVD----LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH--NHLTPIAKLSGGQ 624 (723)
Q Consensus 560 ---------~~ig~~~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~--~~~~~i~~LSGGq 624 (723)
..+||++|+... ..++.++... ...............++.++|+.+||.+. ..++++.+|||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE-VLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 248999997421 1222222111 11111111111123567889999999742 2246789999999
Q ss_pred HHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 625 KARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 625 kqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
||||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++..+|| ||++|++|+++
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d-----ri~~l~~G~i~ 236 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLAD-----RVAVMQNGRCV 236 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcC-----EEEEEECCEEE
Confidence 99999999999999999999999999999999999999875 4689999999999999995 99999999997
Q ss_pred ecCCCHHHHH
Q 048654 701 RFPGTFEEYK 710 (723)
Q Consensus 701 ~~~g~~~~~~ 710 (723)
. .|+++++.
T Consensus 237 ~-~g~~~~~~ 245 (529)
T PRK15134 237 E-QNRAATLF 245 (529)
T ss_pred E-eCCHHHHh
Confidence 4 57776653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=314.30 Aligned_cols=221 Identities=23% Similarity=0.289 Sum_probs=160.2
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.+|+++||++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..+.| .+|+|.+.+..+......
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~--- 80 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED--- 80 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc---
Confidence 36899999999998899999999999999999999999999999999999754223 367887776654321100
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhCCCCc---cccCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS-DAAEAQASKILAGLGFTK---EMQGR 316 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~ 316 (723)
...++..++++.+.... . ...+.+++..... ...... .....++.++++.+++.. ...++
T Consensus 81 --------~~~~~~~i~~~~q~~~~------~-~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~ 144 (252)
T PRK14255 81 --------VVQLRKQVGMVFQQPNP------F-PFSIYENVIYGLR-LAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHE 144 (252)
T ss_pred --------HHHhcCeEEEEECCCcc------C-CCcHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCccchhhHHhc
Confidence 00111222333221110 0 0122222221111 111111 222345677888887631 23468
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|+
T Consensus 145 ~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14255 145 SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGN 224 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999876 4799999999999999999999999999
Q ss_pred EEEecCChhh
Q 048654 395 LHFYRGNFDD 404 (723)
Q Consensus 395 i~~~~g~~~~ 404 (723)
++.+ |+..+
T Consensus 225 i~~~-~~~~~ 233 (252)
T PRK14255 225 LIEF-ADTKQ 233 (252)
T ss_pred EEEe-CCHHH
Confidence 9764 54433
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=298.39 Aligned_cols=173 Identities=38% Similarity=0.569 Sum_probs=142.8
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhh
Q 048654 167 TIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAH 246 (723)
Q Consensus 167 ~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 246 (723)
+++|+++.|+++++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+.++.......
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~-------- 70 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKE-------- 70 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHH--------
Confidence 468999999988999999999999999999999999999999999998654 5567776665543221110
Q ss_pred HHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHH
Q 048654 247 EELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWR 326 (723)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 326 (723)
++..+++ + ..+++.+|+.. ..++.+.+|||||+
T Consensus 71 -----~~~~i~~-------------------------~----------------~q~l~~~gl~~-~~~~~~~~LS~G~~ 103 (180)
T cd03214 71 -----LARKIAY-------------------------V----------------PQALELLGLAH-LADRPFNELSGGER 103 (180)
T ss_pred -----HHHHHhH-------------------------H----------------HHHHHHcCCHh-HhcCCcccCCHHHH
Confidence 0011110 0 00677888864 34688999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 327 MRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 327 QRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+|||+++++..+||++++|++|+++
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998765 569999999999999999999999999986
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=288.03 Aligned_cols=198 Identities=34% Similarity=0.473 Sum_probs=160.9
Q ss_pred CeEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 494 PLLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
.+|+++++++..+.. ...+|++|+|.|.+||.++||||+||||||||-+++|+..|++|+|++.+.
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 378899998887643 346899999999999999999999999999999999999999999987653
Q ss_pred ---eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 560 ---~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral 634 (723)
..+|++||.|. +.++..+|+... +..... ........++.+|+.+||...+.+.| .+|||||||||+||||+
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lP-leL~ge-~~~~~~~~A~~lL~~vGLg~Rl~HyP-~qLSGGEQQRVAiARAf 161 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALP-LELRGE-SSADSRAGAKALLEAVGLGKRLTHYP-AQLSGGEQQRVALARAF 161 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccch-hhhcCC-ccccHHHHHHHHHHHhCcccccccCc-cccCchHHHHHHHHHHh
Confidence 35899999763 344444442211 111111 01124456889999999988776554 89999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
+..|+||+.||||.+||..+-+.+.++|-.+ +.|+|+||||..++.+ | +|++.|.+|+|+
T Consensus 162 a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c-----~R~~r~~~G~l~ 225 (228)
T COG4181 162 AGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-C-----DRQLRLRSGRLV 225 (228)
T ss_pred cCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-h-----hheeeeecceec
Confidence 9999999999999999999999999988665 3589999999999976 4 499999999996
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=294.38 Aligned_cols=208 Identities=25% Similarity=0.379 Sum_probs=169.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
.+.|+++|+.++||.. .+|++|||+...|++|.|||.+||||||+|+||.=+.+|+.|.|..++.
T Consensus 4 ~~~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 4 ENALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ccceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 3568899999999864 4899999999999999999999999999999999999999999987652
Q ss_pred -----------eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Q 048654 560 -----------LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA 626 (723)
Q Consensus 560 -----------~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkq 626 (723)
.++++++|+|. ..+++-+|+++........ ......++++.+|.++||.+... ..+..|||||||
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~-~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSGGQQQ 159 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV-SKAEAIERAEKYLAKVGIAEKAD-AYPAHLSGGQQQ 159 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcC-CHHHHHHHHHHHHHHhCchhhhh-cCccccCchHHH
Confidence 14677888763 3344445544332111110 01113456788999999987665 445799999999
Q ss_pred HHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecC
Q 048654 627 RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703 (723)
Q Consensus 627 Rv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~ 703 (723)
|++|||||+.+|.++|+||||++|||+-.-.++..++++ +.|+++|||.+.|+.+++ ++|+++++|.|. ..
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vs-----s~v~fLh~G~iE-E~ 233 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVS-----SHVIFLHQGKIE-EE 233 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhh-----hheEEeecceec-cc
Confidence 999999999999999999999999999998888888776 479999999999999998 589999999995 57
Q ss_pred CCHHHHH
Q 048654 704 GTFEEYK 710 (723)
Q Consensus 704 g~~~~~~ 710 (723)
|+|+++.
T Consensus 234 G~P~qvf 240 (256)
T COG4598 234 GPPEQVF 240 (256)
T ss_pred CChHHHh
Confidence 9998864
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=313.94 Aligned_cols=204 Identities=27% Similarity=0.380 Sum_probs=164.7
Q ss_pred eEEEEEEEEEcCCCc----------------------ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 495 LLQLIEVSFSYPNRE----------------------DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~----------------------~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
.|+++||++-|+.+. ..-++|+||+|+.|||+.|+|-+|||||||+++|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 467788888776421 1247899999999999999999999999999999999999999
Q ss_pred eEEECCc---------------eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCC
Q 048654 553 EVRRSQK---------------LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHN 612 (723)
Q Consensus 553 ~I~~~~~---------------~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~ 612 (723)
+|.++++ .+++++||+|. ++.++.+|. .| .....|.. ..+.+.++|+.+||....
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv-~f----GLev~Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENV-AF----GLEVQGVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhh-hc----ceeecCCCHHHHHHHHHHHHHHcCchhhh
Confidence 9998774 25788999863 333333332 11 11122222 345688999999998876
Q ss_pred CcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH----cCceEEEEecCHHHHHHhcCcCCC
Q 048654 613 HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE----FTGGVVLVSHDSRLISRVCDDEER 688 (723)
Q Consensus 613 ~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~----~~~tVIivSHD~~~~~~~~d~~~~ 688 (723)
+ +.+.+|||||||||.|||||+.+|+|||+|||+++|||--+..+.+.|.+ +++|||+||||++++.++.
T Consensus 159 ~-~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG----- 232 (386)
T COG4175 159 D-KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG----- 232 (386)
T ss_pred h-cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc-----
Confidence 5 45699999999999999999999999999999999999877776666654 4689999999999999998
Q ss_pred cEEEEEECCeEEecCCCHHHHH
Q 048654 689 SEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 689 drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|||.+|++|+|+. -|+|+++.
T Consensus 233 ~rIaimkdG~ivQ-~Gtp~eIl 253 (386)
T COG4175 233 DRIAIMKDGEIVQ-VGTPEEIL 253 (386)
T ss_pred ceEEEecCCeEEE-eCCHHHHH
Confidence 4999999999985 58998864
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=313.75 Aligned_cols=189 Identities=29% Similarity=0.395 Sum_probs=148.6
Q ss_pred EEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce----------eEEEEccc---c
Q 048654 503 FSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL----------RIGRYSQH---F 569 (723)
Q Consensus 503 ~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~----------~ig~~~q~---~ 569 (723)
..|+. ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.. .++|++|. +
T Consensus 29 ~~~~~--~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 29 RKYRE--VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred cccCC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcccc
Confidence 34543 358999999999999999999999999999999999999999999886632 47888642 1
Q ss_pred ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCC
Q 048654 570 VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH 649 (723)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~ 649 (723)
...+++.++.. .....+. .........+..+++.+|+.... ++++.+|||||||||+||+||+.+|+||||||||+|
T Consensus 107 ~~~~tv~e~l~-~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 107 WWDLPVIDSFY-LLAAIYD-LPPARFKKRLDELSELLDLEELL-DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred CCCCcHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 22233333321 1111111 10001223467789999997544 467799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 650 LDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 650 LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
||+.++..+.++|.++ +.|||+||||++++..+|| ++++|.+|+++.
T Consensus 184 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d-----~i~~l~~G~i~~ 234 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALAR-----RVLVIDKGRLLY 234 (236)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCC-----EEEEEeCCEEEe
Confidence 9999999999999887 3599999999999999995 999999999963
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=315.90 Aligned_cols=224 Identities=25% Similarity=0.323 Sum_probs=165.2
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeeecCCChHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~~~~~~~~ 238 (723)
...+|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..+ .|..|+|.+.+.++......
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~- 100 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD- 100 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC-
Confidence 34579999999999988999999999999999999999999999999999998653 14678887776655321100
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCc---ccc
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTK---EMQ 314 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~ 314 (723)
...++..++++.+.... . ...+.+++.... ...... ......++.++++.+++.. ...
T Consensus 101 ----------~~~~~~~i~~v~q~~~l------~-~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 162 (272)
T PRK14236 101 ----------VAELRRRVGMVFQRPNP------F-PKSIYENVVYGL-RLQGINNRRVLDEAVERSLRGAALWDEVKDRL 162 (272)
T ss_pred ----------HHHHhccEEEEecCCcc------C-cccHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHcCCChhHHHHh
Confidence 00112223333221110 0 012222222111 111111 1223456788899998853 234
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
++.+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++
T Consensus 163 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 242 (272)
T PRK14236 163 HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYM 242 (272)
T ss_pred hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 6889999999999999999999999999999999999999999999999866 47999999999999999999999999
Q ss_pred CEEEEecCChhhH
Q 048654 393 QKLHFYRGNFDDF 405 (723)
Q Consensus 393 G~i~~~~g~~~~~ 405 (723)
|+++. .|+.+++
T Consensus 243 G~i~~-~g~~~~~ 254 (272)
T PRK14236 243 GKLVE-YGDTDTL 254 (272)
T ss_pred CEEEe-cCCHHHH
Confidence 99964 4666654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=316.26 Aligned_cols=209 Identities=25% Similarity=0.385 Sum_probs=164.6
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC--------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ-------------- 558 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~-------------- 558 (723)
.|+|.++|++++|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+
T Consensus 8 ~~~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 8 EDVFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hhheeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 5789999999999863 589999999999999999999999999999999999999997765443
Q ss_pred ---ceeEEEEccccc--cccCccccHHHHHHhhCCCCCCC-cHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHH
Q 048654 559 ---KLRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGL-SKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 559 ---~~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~ 629 (723)
+..++|++|... ..+++.++.... .... ..... .....+..+++.+++.. ......+..||||||||++
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 163 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYP-LKSH-GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLT 163 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHH-HHhc-CCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHH
Confidence 124789988642 222333332211 1111 11000 11245678889999853 1223567899999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||||+.+|++|||||||+|||+.+...+.+.|.++. .|||+||||++++..+|| ++++|++|+++. .|+.+
T Consensus 164 laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d-----~v~~l~~g~i~~-~g~~~ 237 (257)
T PRK14246 164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVAD-----YVAFLYNGELVE-WGSSN 237 (257)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCC-----EEEEEECCEEEE-ECCHH
Confidence 9999999999999999999999999999999998874 699999999999999995 999999999985 47777
Q ss_pred HHHH
Q 048654 708 EYKE 711 (723)
Q Consensus 708 ~~~~ 711 (723)
++..
T Consensus 238 ~~~~ 241 (257)
T PRK14246 238 EIFT 241 (257)
T ss_pred HHHh
Confidence 6654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=313.23 Aligned_cols=209 Identities=26% Similarity=0.359 Sum_probs=161.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS--P---TEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~--p---~~G~I~~~~~-------- 559 (723)
+++|+++||++.|++ ..+|+++||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 3 KKIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred cceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 568999999999975 358999999999999999999999999999999999975 4 5899987653
Q ss_pred -----eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|+.... .++.++.... .............+.+..+++.+++.. ....+++.+|||||||||+|
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYG-LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred HHHhcCeEEEEECCCccCCCcHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 2488999874211 2332322111 111110000001234566778887642 12245678999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||+|+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| +|++|++|+++.+ |++.+
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d-----~i~~l~~G~i~~~-~~~~~ 233 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISD-----KTAFFLTGNLIEF-ADTKQ 233 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCC-----EEEEEECCEEEEe-CCHHH
Confidence 999999999999999999999999999999998874 689999999999999995 9999999999854 66655
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
..
T Consensus 234 ~~ 235 (252)
T PRK14255 234 MF 235 (252)
T ss_pred Hh
Confidence 43
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=311.83 Aligned_cols=222 Identities=23% Similarity=0.308 Sum_probs=168.2
Q ss_pred ceEEEeEEEEeCCe------------------------eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCC
Q 048654 165 DITIDNFSVAARGK------------------------ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK 220 (723)
Q Consensus 165 ~I~l~nls~~y~~~------------------------~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~ 220 (723)
.|+++|+++-||.+ .-++|+||+|+.||++.|+|-||||||||+|+|+++..| .
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t 81 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--T 81 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--C
Confidence 47788888877542 247999999999999999999999999999999988765 5
Q ss_pred cEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHH
Q 048654 221 NIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQ 299 (723)
Q Consensus 221 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 299 (723)
.|+|.+.+.++...+...+..+- +..++++ |+..+. +...+.++..+.+ .+..++..+.+++
T Consensus 82 ~G~ilv~g~di~~~~~~~Lr~~R---------r~~~sMVFQ~FaLl-------PhrtVl~Nv~fGL-ev~Gv~~~er~~~ 144 (386)
T COG4175 82 RGEILVDGKDIAKLSAAELRELR---------RKKISMVFQSFALL-------PHRTVLENVAFGL-EVQGVPKAEREER 144 (386)
T ss_pred CceEEECCcchhcCCHHHHHHHH---------hhhhhhhhhhhccc-------cchhHhhhhhcce-eecCCCHHHHHHH
Confidence 66777777776655544332221 1223332 222111 1112223322221 1234556778899
Q ss_pred HHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCcEEEEEeC
Q 048654 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC----RWKKTLVVVSH 375 (723)
Q Consensus 300 ~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~----~~~~TVIivsH 375 (723)
+.++|+.+||. .+.++++.+|||||||||.|||||+.+|+|||+|||||+|||--+..+++.|. ++++|||||||
T Consensus 145 a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitH 223 (386)
T COG4175 145 ALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITH 223 (386)
T ss_pred HHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 99999999997 46689999999999999999999999999999999999999977666665554 45789999999
Q ss_pred CHHHHHhhCCEEEEEeCCEEEEecCChhhHHh
Q 048654 376 DRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407 (723)
Q Consensus 376 dl~~l~~iad~Ii~L~~G~i~~~~g~~~~~~~ 407 (723)
|++++.++.|||.+|++|+|+. .|+++++..
T Consensus 224 DLdEAlriG~rIaimkdG~ivQ-~Gtp~eIl~ 254 (386)
T COG4175 224 DLDEALRIGDRIAIMKDGEIVQ-VGTPEEILL 254 (386)
T ss_pred CHHHHHhccceEEEecCCeEEE-eCCHHHHHc
Confidence 9999999999999999999975 588877643
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=312.79 Aligned_cols=205 Identities=26% Similarity=0.393 Sum_probs=158.5
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CCCcceEEECCc------------e
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL--SPTEGEVRRSQK------------L 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~--~p~~G~I~~~~~------------~ 560 (723)
||+++||++.|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+++. .
T Consensus 1 ~i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 1 MLSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred CeEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 57899999999753 5899999999999999999999999999999999995 699999988763 2
Q ss_pred eEEEEccccccccCccccHHHHH---H---hhCCCCCCC---cHHHHHHHHHHhCCCCCCCCcCCCC-CCCHHHHHHHHH
Q 048654 561 RIGRYSQHFVDLLTMEETPVSYL---L---RLHPDQEGL---SKQEAVRAKLGKFGLPSHNHLTPIA-KLSGGQKARVVF 630 (723)
Q Consensus 561 ~ig~~~q~~~~~~~~~~~~~~~~---~---~~~~~~~~~---~~~~~~~~~L~~~gl~~~~~~~~i~-~LSGGqkqRv~l 630 (723)
.++|++|........ +...+. . ..+...... .....+..+++.+++......+++. .|||||||||+|
T Consensus 79 ~i~~~~q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 79 GIFMAFQYPVEIPGV--SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred ceEEEecCchhccch--hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 378888864211111 111110 0 000000000 1134567788999996433445554 799999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHh-cCcCCCcEEEEEECCeEEecCCCH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRV-CDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~-~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+ | |+|++|++|+++ +.|++
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~-----d~i~~l~~g~i~-~~g~~ 230 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKP-----DYVHVLYQGRIV-KSGDF 230 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhC-----CEEEEEECCeEE-EeCCH
Confidence 99999999999999999999999999999988776 36999999999999887 6 599999999997 46787
Q ss_pred HHH
Q 048654 707 EEY 709 (723)
Q Consensus 707 ~~~ 709 (723)
+..
T Consensus 231 ~~~ 233 (248)
T PRK09580 231 TLV 233 (248)
T ss_pred HHH
Confidence 643
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=302.44 Aligned_cols=174 Identities=37% Similarity=0.568 Sum_probs=143.3
Q ss_pred EEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCcc
Q 048654 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTME 576 (723)
Q Consensus 497 ~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~ 576 (723)
+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. + .+ ..
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~-~---~~-----~~-- 67 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD-L---AS-----LS-- 67 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-C---Cc-----CC--
Confidence 36899999975 358999999999999999999999999999999999999999999987642 1 00 00
Q ss_pred ccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHH
Q 048654 577 ETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656 (723)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~ 656 (723)
.... ... ...+.++++.+|+.... .+++.+|||||+|||+|||||+.+|++|||||||+|||+.++.
T Consensus 68 --~~~~-~~~---------i~~~~q~l~~~gl~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~ 134 (180)
T cd03214 68 --PKEL-ARK---------IAYVPQALELLGLAHLA-DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQI 134 (180)
T ss_pred --HHHH-HHH---------HhHHHHHHHHcCCHhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 0000 000 00111278889997544 4667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 657 ALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 657 ~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
.+.++|.++ +.|||+||||++++.++|| ++++|++|+++.
T Consensus 135 ~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d-----~~~~l~~g~i~~ 178 (180)
T cd03214 135 ELLELLRRLARERGKTVVMVLHDLNLAARYAD-----RVILLKDGRIVA 178 (180)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEe
Confidence 999999876 3589999999999999995 999999999863
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=314.45 Aligned_cols=220 Identities=20% Similarity=0.265 Sum_probs=155.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+....|..|+|.+.+..+...+.....
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~---- 76 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA---- 76 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHh----
Confidence 3889999999998899999999999999999999999999999999999853235567777665543221111100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHh------cCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI------LGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
+..+.++.+.... ............+...+.. +.......++.++++.+++.....++++
T Consensus 77 --------~~~i~~~~q~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (248)
T PRK09580 77 --------GEGIFMAFQYPVE------IPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142 (248)
T ss_pred --------hcceEEEecCchh------ccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC
Confidence 0011111110000 0000000000000000000 1111234567888999999644456666
Q ss_pred C-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhh-CCEEEEEeCC
Q 048654 319 K-SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTV-CTEIIHLHDQ 393 (723)
Q Consensus 319 ~-~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~i-ad~Ii~L~~G 393 (723)
. +|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+ ||+|++|++|
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g 222 (248)
T PRK09580 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 222 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECC
Confidence 5 79999999999999999999999999999999999999999988754 57999999999999987 8999999999
Q ss_pred EEEEecCChh
Q 048654 394 KLHFYRGNFD 403 (723)
Q Consensus 394 ~i~~~~g~~~ 403 (723)
+++ +.|+++
T Consensus 223 ~i~-~~g~~~ 231 (248)
T PRK09580 223 RIV-KSGDFT 231 (248)
T ss_pred eEE-EeCCHH
Confidence 996 457765
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.50 Aligned_cols=207 Identities=23% Similarity=0.313 Sum_probs=165.5
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CcceEEECCc-----------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP--TEGEVRRSQK----------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p--~~G~I~~~~~----------- 559 (723)
.++|+++|++++|++ ..+|+||||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 3 EYLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred CceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 468999999999975 3589999999999999999999999999999999999996 8999988662
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCC-CCCCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHP-DQEGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral 634 (723)
..++|++|.+. ..+++.++.. +...... ..... .....+.++|+.+|+.... ++++.+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIF-LGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-ATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhh-hcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-ccchhhCCHHHHHHHHHHHHH
Confidence 24899999742 2223332211 1000000 00000 1234578899999997544 567899999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+|+ +.|+++++
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d-----~v~~l~~G~i~-~~~~~~~~ 230 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISD-----TICVIRDGRHI-GTRPAAGM 230 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcC-----EEEEEECCEEe-eecccccC
Confidence 9999999999999999999999999999886 3689999999999999995 99999999997 45666654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=312.69 Aligned_cols=221 Identities=22% Similarity=0.285 Sum_probs=161.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+..|.. ..|.|.+.+..+......
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~---- 79 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD---- 79 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC----
Confidence 5899999999998899999999999999999999999999999999999876542 257777766554321100
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
...++..++++.+.... . ...+.+++..... ..... .......+.++++.+|+.. ...+++
T Consensus 80 -------~~~~~~~i~~v~q~~~~------~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 144 (251)
T PRK14249 80 -------VVNLRKRVGMVFQQPNP------F-PKSIFDNVAFGPR-MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKS 144 (251)
T ss_pred -------hHHhhceEEEEecCCcc------C-cCcHHHHHhhHHH-hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCC
Confidence 00112223333221110 0 1122222221111 11111 1223456777788888642 234688
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|++
T Consensus 145 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14249 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDL 224 (251)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeE
Confidence 9999999999999999999999999999999999999999999999876 47999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+.+ |+.+++
T Consensus 225 ~~~-~~~~~~ 233 (251)
T PRK14249 225 VEY-GRTGEI 233 (251)
T ss_pred EEe-CCHHHH
Confidence 754 665544
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=309.63 Aligned_cols=200 Identities=28% Similarity=0.438 Sum_probs=155.2
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++|+++.|++. ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 3 IEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 7899999999742 34899999999999999999999999999999999999999999998762 24899
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhC-----------CCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF-----------GLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-----------gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
++|... .+ ..+..+.+ ..+.... ....+..++..+ ++.... .+++.+|||||||||+|||+
T Consensus 82 ~~q~~~-~~--~~tv~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 82 VLQDTF-LF--SGTIMENI-RLGRPNA---TDEEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLSQGERQLLAIARA 153 (229)
T ss_pred ecCCch-hh--hhHHHHHH-hccCCCC---CHHHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCCHHHHHHHHHHHH
Confidence 998742 11 12322222 1111111 122233333333 343322 34568999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|++|||||||+|||+.++..|.+.|.++. .|||+||||++++. .| |++++|++|+++. .|+.+++..
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~-----d~i~~l~~g~~~~-~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NA-----DKILVLDDGKIIE-EGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hC-----CEEEEEeCCeEEE-eCCHHHHHh
Confidence 999999999999999999999999999998874 68999999999986 47 4999999999974 577776653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=316.25 Aligned_cols=205 Identities=30% Similarity=0.395 Sum_probs=163.6
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC--------cceEEECCce------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT--------EGEVRRSQKL------ 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~--------~G~I~~~~~~------ 560 (723)
||+++|+++.|++. .+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++..
T Consensus 1 ml~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 58899999999753 5899999999999999999999999999999999999998 9999987631
Q ss_pred -----eEEEEccccccccCccccHHHHHHhh-CCCC--CC---CcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHH
Q 048654 561 -----RIGRYSQHFVDLLTMEETPVSYLLRL-HPDQ--EG---LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 561 -----~ig~~~q~~~~~~~~~~~~~~~~~~~-~~~~--~~---~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~ 629 (723)
.++|++|.....+ ..+....+... +... .+ ....+.+..+|+.+|+.... ++++.+|||||+|||+
T Consensus 79 ~~~~~~~~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~ 155 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-GRDVTTLSGGELARVQ 155 (272)
T ss_pred HHHHhhcEEecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHH
Confidence 3688888642111 12222222111 1100 01 01234577899999997654 4678999999999999
Q ss_pred HHHHHc---------cCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC
Q 048654 630 FTSISM---------SKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN 696 (723)
Q Consensus 630 lAral~---------~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~ 696 (723)
|||||+ .+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+|| ++++|++
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d-----~i~~l~~ 230 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHAD-----RIAMLAD 230 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC-----EEEEEEC
Confidence 999999 599999999999999999999999999875 3689999999999999995 9999999
Q ss_pred CeEEecCCCHHHHH
Q 048654 697 GTVSRFPGTFEEYK 710 (723)
Q Consensus 697 G~i~~~~g~~~~~~ 710 (723)
|+|+. .|+++++.
T Consensus 231 G~i~~-~g~~~~~~ 243 (272)
T PRK13547 231 GAIVA-HGAPADVL 243 (272)
T ss_pred CeEEE-ecCHHHHc
Confidence 99974 57777664
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=310.29 Aligned_cols=204 Identities=28% Similarity=0.417 Sum_probs=157.8
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++|+++.|++....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999754235899999999999999999999999999999999999999999998763 24889
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHH-H-----HHHHHHHhC--CCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQ-E-----AVRAKLGKF--GLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~L~~~--gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
++|+..- + ..+..+.+ ............ . .+.+++..+ ++.... ..++.+|||||||||+|||||+.
T Consensus 81 ~~q~~~~-~--~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 81 VSQDVFL-F--NDTVAENI-AYGRPGATREEVEEAARAANAHEFIMELPEGYDTVI-GERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred eCCCCee-c--cccHHHHh-hccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceee-ccCCCcCCHHHHHHHHHHHHHhc
Confidence 9987421 1 12333322 111111000000 0 133455555 555433 35678999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+|++|||||||+|||+.+++.+.+.|.++ +.|||+||||++++.. | |+|++|++|+++. .|+++++..
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~-----d~v~~l~~G~i~~-~~~~~~~~~ 225 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-A-----DRIVVLEDGKIVE-RGTHEELLA 225 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-C-----CEEEEecCCeEee-eCCHHHHHH
Confidence 99999999999999999999999999887 3589999999999975 8 4999999999974 578877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=315.68 Aligned_cols=220 Identities=30% Similarity=0.304 Sum_probs=161.2
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC------CcEEEEEeeeeecCCChHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP------KNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~------~~~~i~~~~q~~~~~~~~~ 238 (723)
+|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|+..|.. ..|+|.+.+..+.......
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 3889999999999999999999999999999999999999999999999875531 0577777666543221111
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHH-HHHH--hcCchHHHHHHHHHHHhCCCCccccC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY-EKLQ--ILGSDAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~--~~~~~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
+...+.++.+.... .....+.+++.... .... .........++.++|+.+|+.. ..+
T Consensus 81 -------------~~~~~~~v~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~ 140 (272)
T PRK13547 81 -------------LARLRAVLPQAAQP------AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-LVG 140 (272)
T ss_pred -------------HHhhcEEecccCCC------CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-hhc
Confidence 11112222221100 00112222221110 0000 0011233456888999999974 457
Q ss_pred CCCCCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHh
Q 048654 316 RPTKSFSGGWRMRISLARALF---------VQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNT 382 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~---------~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~ 382 (723)
+++.+|||||+|||+|||||+ .+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++.+
T Consensus 141 ~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~ 220 (272)
T PRK13547 141 RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAAR 220 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 899999999999999999999 599999999999999999999999998754 5799999999999999
Q ss_pred hCCEEEEEeCCEEEEecCChhhH
Q 048654 383 VCTEIIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 383 iad~Ii~L~~G~i~~~~g~~~~~ 405 (723)
+||++++|++|+++. .|+.+++
T Consensus 221 ~~d~i~~l~~G~i~~-~g~~~~~ 242 (272)
T PRK13547 221 HADRIAMLADGAIVA-HGAPADV 242 (272)
T ss_pred hCCEEEEEECCeEEE-ecCHHHH
Confidence 999999999999964 4665544
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=317.71 Aligned_cols=220 Identities=23% Similarity=0.301 Sum_probs=163.5
Q ss_pred ceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCC-cEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK-NIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~-~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+..|..+ .|+|.+.+.++......
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~---- 80 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW---- 80 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH----
Confidence 5999999999975 5799999999999999999999999999999999998766542 26777776655321111
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
.++..++++.+.... ......+.+++..... ..........+++.++++.+|+.. ..++++.+|
T Consensus 81 ---------~~~~~ig~v~q~~~~-----~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~L 144 (282)
T PRK13640 81 ---------DIREKVGIVFQNPDN-----QFVGATVGDDVAFGLE-NRAVPRPEMIKIVRDVLADVGMLD-YIDSEPANL 144 (282)
T ss_pred ---------HHHhheEEEEECHHH-----hhccCCHHHHHHhhHH-hCCCCHHHHHHHHHHHHHHCCChh-HhcCCcccC
Confidence 111223332221100 0001122233321111 111223344567899999999974 457999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||+|||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+|||+++++. +||+|++|++|+++.
T Consensus 145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~ 223 (282)
T PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA 223 (282)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998764 579999999999995 799999999999975
Q ss_pred ecCChhhHH
Q 048654 398 YRGNFDDFE 406 (723)
Q Consensus 398 ~~g~~~~~~ 406 (723)
.|+.+++.
T Consensus 224 -~g~~~~~~ 231 (282)
T PRK13640 224 -QGSPVEIF 231 (282)
T ss_pred -eCCHHHHh
Confidence 47766553
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=313.07 Aligned_cols=224 Identities=25% Similarity=0.391 Sum_probs=162.3
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE----EEEEeeeeecCCChH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI----DVLLVEQEVVGDDRS 237 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~----~i~~~~q~~~~~~~~ 237 (723)
..++|+++|++++|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+..|..|.+ .+.+.+..+.....
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~- 85 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA- 85 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH-
Confidence 3457999999999999999999999999999999999999999999999999877655542 22222221110000
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---ccc
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQ 314 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~ 314 (723)
..++..++++.+.... .....+.+++.................++.++++.+|+.. ...
T Consensus 86 ------------~~~~~~i~~~~q~~~~------~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (257)
T PRK14246 86 ------------IKLRKEVGMVFQQPNP------FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL 147 (257)
T ss_pred ------------HHHhcceEEEccCCcc------CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhh
Confidence 0112223333221110 0111223333221111001112334567889999999852 234
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
++.+..||||||||++|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+|||+++++..+||++++|++
T Consensus 148 ~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~ 227 (257)
T PRK14246 148 NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYN 227 (257)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6888999999999999999999999999999999999999999999999876 47999999999999999999999999
Q ss_pred CEEEEecCChhhH
Q 048654 393 QKLHFYRGNFDDF 405 (723)
Q Consensus 393 G~i~~~~g~~~~~ 405 (723)
|+++.+ |+.+++
T Consensus 228 g~i~~~-g~~~~~ 239 (257)
T PRK14246 228 GELVEW-GSSNEI 239 (257)
T ss_pred CEEEEE-CCHHHH
Confidence 999754 665554
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=314.37 Aligned_cols=222 Identities=22% Similarity=0.278 Sum_probs=163.3
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~~~ 240 (723)
++|+++|+++.|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+..+.| ..|+|.+.++.+.......
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~-- 82 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV-- 82 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch--
Confidence 46999999999999999999999999999999999999999999999999865433 3688887776553210000
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCc---cccCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTK---EMQGR 316 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~ 316 (723)
..++..++++.+.... . ...+.+++.... ..... .....+.++.++++.+++.. ...++
T Consensus 83 ---------~~~~~~i~~~~q~~~~------~-~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 145 (253)
T PRK14261 83 ---------VALRRKIGMVFQRPNP------F-PKSIYENVAYGP-RIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHD 145 (253)
T ss_pred ---------hhhhceEEEEecCCcc------C-cccHHHHHHhhH-HhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhc
Confidence 0111222332221110 0 012222222111 11111 11233456778888888742 23468
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++.+||||||||++|||||+.+|+||||||||++||+.++.++.++|+++ +.|||++||+++++..+||+|++|++|+
T Consensus 146 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~ 225 (253)
T PRK14261 146 SALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGK 225 (253)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999865 4799999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|+.+++
T Consensus 226 i~~-~g~~~~~ 235 (253)
T PRK14261 226 LIE-FDKTTQI 235 (253)
T ss_pred EEE-cCCHHHH
Confidence 964 4666554
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=319.14 Aligned_cols=218 Identities=22% Similarity=0.271 Sum_probs=162.8
Q ss_pred ceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 165 DITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 165 ~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
+|+++||++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+.++.......
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~~~~~~~---- 78 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLSEETVWD---- 78 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHH----
Confidence 5999999999974 5799999999999999999999999999999999998654 5667777776653222111
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
+...++++.+.... ......+.+++..... ...........++.++++.+||.. ..++++.+||
T Consensus 79 ---------~~~~i~~~~q~~~~-----~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS 142 (279)
T PRK13635 79 ---------VRRQVGMVFQNPDN-----QFVGATVQDDVAFGLE-NIGVPREEMVERVDQALRQVGMED-FLNREPHRLS 142 (279)
T ss_pred ---------HhhheEEEEeCHHH-----hcccccHHHHHhhhHh-hCCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCC
Confidence 11122222211000 0001122232221111 111223344567899999999974 4578999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++.. ||+|++|++|+++ +
T Consensus 143 ~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~-~ 220 (279)
T PRK13635 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEIL-E 220 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-E
Confidence 99999999999999999999999999999999999999999764 5799999999999974 9999999999986 4
Q ss_pred cCChhhHH
Q 048654 399 RGNFDDFE 406 (723)
Q Consensus 399 ~g~~~~~~ 406 (723)
.|+.+++.
T Consensus 221 ~g~~~~~~ 228 (279)
T PRK13635 221 EGTPEEIF 228 (279)
T ss_pred ECCHHHHh
Confidence 57766553
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=309.15 Aligned_cols=193 Identities=27% Similarity=0.362 Sum_probs=153.1
Q ss_pred eEEEEEEEEEcCCC-----cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC--C---c-----
Q 048654 495 LLQLIEVSFSYPNR-----EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS--Q---K----- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~-----~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~--~---~----- 559 (723)
||+++|+++.|++. ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++ + .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 57899999999631 1358999999999999999999999999999999999999999999886 2 1
Q ss_pred ---------eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 560 ---------LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 560 ---------~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
..++|++|... ..+++.++.... ..... .......+.+.++++.+|+.....++++.+|||||||||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP-LLERG-VPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHH-HHHcC-CCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 24789998742 222333332111 11111 100012346778999999975444567899999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV 694 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl 694 (723)
+|||||+.+|++|||||||+|||+.+...+.++|+++ +.|||+||||.+++..+|| +++.+
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d-----~i~~~ 222 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVAD-----RVMDV 222 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc-----eeEec
Confidence 9999999999999999999999999999999999886 3589999999999999995 88876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=307.29 Aligned_cols=197 Identities=30% Similarity=0.465 Sum_probs=156.4
Q ss_pred eEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+|+++|+++.|++. ...+|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 37899999999742 145899999999999999999999999999999999999999999988653
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..++|++|+.. ..+++.++.. +....+...........+.++++.+||.... .+++.+||||||||++|||+|+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQ-MALELQPNLSYQEARERARAMLEAVGLGDHL-DYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHH-HHHHhccCCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHHHHHHHHhc
Confidence 24889998742 2233333322 1111111110001234578899999997544 45678999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++ .+|| +|++|++|++
T Consensus 159 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d-----~v~~l~~g~~ 219 (220)
T TIGR02982 159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVAD-----RIVHMEDGKL 219 (220)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCC-----EEEEEECCEE
Confidence 99999999999999999999999999775 46999999999964 6884 9999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=309.59 Aligned_cols=204 Identities=27% Similarity=0.394 Sum_probs=163.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
|+++|+++.|++ . +|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|++++. ..++|++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~ 77 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVP 77 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEe
Confidence 468999999974 2 799999999999999999999999999999999999999999988763 2589999
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|... ..+++.++.. +...... .........+.++++.+||.... .+++.+|||||+|||+|||||+.+|++||||
T Consensus 78 q~~~~~~~~t~~e~l~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllD 154 (235)
T cd03299 78 QNYALFPHMTVYKNIA-YGLKKRK-VDKKEIERKVLEIAEMLGIDHLL-NRKPETLSGGEQQRVAIARALVVNPKILLLD 154 (235)
T ss_pred ecCccCCCccHHHHHH-HHHHHcC-CCHHHHHHHHHHHHHHcCChhHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 8742 2233333321 1111110 00001234567889999997544 4667999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 645 EPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||+|||+.++..+.++|+++ +.|||++||+++++..+|| +|++|++|+++. .|+++++.+
T Consensus 155 EPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~~ 219 (235)
T cd03299 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALAD-----KVAIMLNGKLIQ-VGKPEEVFK 219 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-ecCHHHHHh
Confidence 999999999999999999875 4689999999999999995 999999999974 577776644
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=312.47 Aligned_cols=208 Identities=22% Similarity=0.302 Sum_probs=162.0
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc---------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK--------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~--------- 559 (723)
++|+++|+++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 2 NKFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred CeEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 36899999999975 3589999999999999999999999999999999999986 5999987652
Q ss_pred ---eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 560 ---~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~lAr 632 (723)
..++|++|..... .++.++... ..............+.+..+++.+++.. .....++.+|||||||||+|||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAY-GLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHh-HHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 2378998874211 222222211 1111100000011234667788888743 1224567899999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| ++++|++|+|+. .|+.+++.
T Consensus 159 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~ 232 (249)
T PRK14253 159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISD-----RTAFFLMGELVE-HDDTQVIF 232 (249)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999874 689999999999999995 999999999975 57777664
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=312.01 Aligned_cols=223 Identities=22% Similarity=0.267 Sum_probs=163.9
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC-C--CcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV-P--KNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~-~--~~~~i~~~~q~~~~~~~~~~~ 240 (723)
..|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..+. | ..|.|.+.++.+......
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~--- 82 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN--- 82 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc---
Confidence 3699999999999889999999999999999999999999999999999986643 2 467888776654321100
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
...++..++++.+.... . ...+.+++.................++.++++.+|+.. ...+++
T Consensus 83 --------~~~~~~~i~~v~q~~~l------~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 147 (259)
T PRK14260 83 --------INRLRRQIGMVFQRPNP------F-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKS 147 (259)
T ss_pred --------hHhhhhheEEEeccccc------C-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCC
Confidence 00112223333221110 0 11222222211111001122233456788899998742 245788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEe----
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLH---- 391 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~---- 391 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||++++|+
T Consensus 148 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~ 227 (259)
T PRK14260 148 ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDES 227 (259)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCC
Confidence 9999999999999999999999999999999999999999999999875 4799999999999999999999998
Q ss_pred -CCEEEEecCChhhH
Q 048654 392 -DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 -~G~i~~~~g~~~~~ 405 (723)
+|+++. .|+..++
T Consensus 228 ~~G~i~~-~~~~~~~ 241 (259)
T PRK14260 228 RIGQMVE-FGVTTQI 241 (259)
T ss_pred CCceEEE-eCCHHHH
Confidence 599874 4776655
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=314.36 Aligned_cols=221 Identities=21% Similarity=0.267 Sum_probs=160.4
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.+|+++||+++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+..+. |..|+|.+.+.++.......
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~-- 89 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP-- 89 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH--
Confidence 4699999999999999999999999999999999999999999999999986531 46778877666543111000
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
..++..++++.+.... . ...+.+++.... ...... .....++.++++.+++.. ...+++
T Consensus 90 ---------~~~~~~i~~v~q~~~l------~-~~tv~enl~~~~-~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~ 151 (269)
T PRK14259 90 ---------VEVRRRIGMVFQQPNP------F-PKSIYENIAFGA-RINGYT-GDMDELVERSLRKAAVWDECKDKLNES 151 (269)
T ss_pred ---------HHHhhceEEEccCCcc------c-hhhHHHHHhhhh-hhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCC
Confidence 0112223333221100 0 112222221111 111111 223456777888887631 235788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeC---
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD--- 392 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~--- 392 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++
T Consensus 152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~ 231 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEV 231 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999876 46999999999999999999999996
Q ss_pred --------CEEEEecCChhhH
Q 048654 393 --------QKLHFYRGNFDDF 405 (723)
Q Consensus 393 --------G~i~~~~g~~~~~ 405 (723)
|+++ ..|+..++
T Consensus 232 ~~~~~g~~g~~~-~~~~~~~~ 251 (269)
T PRK14259 232 EGGSGGKVGYLV-EFNETKKI 251 (269)
T ss_pred ccccccccceEE-EeCCHHHH
Confidence 4555 34666554
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=305.20 Aligned_cols=187 Identities=28% Similarity=0.416 Sum_probs=152.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce----------eEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL----------RIGR 564 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~----------~ig~ 564 (723)
||+++|+++.|++. .+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 1 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 58899999999753 58999999999999999999999999999999999999999999987632 4778
Q ss_pred Eccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 565 YSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 565 ~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
++|... ..+++.++.... ...+. ......+..+++.+||.... ++++.+|||||||||+|||||+.+|+|||
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~-~~~~~----~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~la~al~~~p~lll 152 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFY-QRLHG----PGDDEALWEALAQVGLAGFE-DVPVRQLSAGQQRRVALARLWLTRAPLWI 152 (204)
T ss_pred eCCccccCcCCcHHHHHHHH-HHhcC----ccHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 887532 222333332111 11111 12345678899999997544 46789999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE
Q 048654 643 LDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV 694 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl 694 (723)
|||||+|||+.++..+.++|+++ +.|||+||||.+++.. |+ .|++++
T Consensus 153 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~----~~~~~~ 202 (204)
T PRK13538 153 LDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS-DK----VRKLRL 202 (204)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc-CC----ceEEec
Confidence 99999999999999999999887 4699999999999987 54 488877
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=344.45 Aligned_cols=201 Identities=25% Similarity=0.294 Sum_probs=163.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
+|+++|+++.|++. .+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 3 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 69999999999753 4899999999999999999999999999999999999999999987542 1267
Q ss_pred EEcccccccc-Cc-----cccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 564 RYSQHFVDLL-TM-----EETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 564 ~~~q~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
|++|.....+ .. ..+....+ .. .....+++.++++.+||.... ++++.+|||||||||+||+||+.+
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~ 153 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEII-QD-----EVKDPARCEQLAQQFGITALL-DRRFKYLSTGETRKTLLCQALMSE 153 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhc-cc-----chhHHHHHHHHHHHcCCHhhh-hCCcccCCHHHHHHHHHHHHHHcC
Confidence 8888642111 11 01111111 00 011245678899999997544 577899999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|++|||||||+|||+.++..+.++|.++ +.|||+||||++++.++|| +|++|++|+++. .|+++++.
T Consensus 154 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d-----~v~~l~~G~i~~-~~~~~~~~ 223 (490)
T PRK10938 154 PDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQ-----FAGVLADCTLAE-TGEREEIL 223 (490)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCC-----EEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999887 3699999999999999995 999999999974 57777653
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=315.04 Aligned_cols=210 Identities=28% Similarity=0.338 Sum_probs=163.7
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~------- 559 (723)
..++|+++|+++.|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 22 ~~~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 22 EQTALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCcEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 35689999999999753 58999999999999999999999999999999999987 48999987652
Q ss_pred ------eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHH
Q 048654 560 ------LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 560 ------~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~ 629 (723)
..++|++|...-. .++.++... ................+..+++.+++.. ...++++.+|||||||||+
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVY-GLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 2478998864211 122222211 1111110000001244677888888853 1234567899999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| +|++|++|+|+. .|+++
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d-----~i~~l~~G~i~~-~g~~~ 252 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSD-----YTAFMYMGKLVE-YGDTD 252 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCC-----EEEEEECCEEEe-cCCHH
Confidence 9999999999999999999999999999999998874 689999999999999995 999999999974 57777
Q ss_pred HHH
Q 048654 708 EYK 710 (723)
Q Consensus 708 ~~~ 710 (723)
++.
T Consensus 253 ~~~ 255 (272)
T PRK14236 253 TLF 255 (272)
T ss_pred HHh
Confidence 654
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=311.96 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=158.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCcceEEECCce----------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD--LSPTEGEVRRSQKL---------- 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl--~~p~~G~I~~~~~~---------- 560 (723)
+++|+++||++.|++. .+|++|||+|.+|++++|+|+||||||||+++|+|+ ++|++|+|++++..
T Consensus 5 ~~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 5 KPILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred CceEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 4589999999999753 589999999999999999999999999999999998 58999999876531
Q ss_pred --eEEEEccccc--cccCccccHHHHHHhhCC---CCCCCc---HHHHHHHHHHhCCCCCCCCcCCCC-CCCHHHHHHHH
Q 048654 561 --RIGRYSQHFV--DLLTMEETPVSYLLRLHP---DQEGLS---KQEAVRAKLGKFGLPSHNHLTPIA-KLSGGQKARVV 629 (723)
Q Consensus 561 --~ig~~~q~~~--~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~-~LSGGqkqRv~ 629 (723)
.++|++|... ..++..++. ........ ...... ....+.++|+.+|+......+++. .|||||+|||+
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFL-RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred eeeEEEEeccccccccccHHHHH-HHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 2567777632 111111111 10011000 000001 124567889999997333335555 59999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHh-cCcCCCcEEEEEECCeEEecCCC
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRV-CDDEERSEIWVVENGTVSRFPGT 705 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~-~d~~~~drv~vl~~G~i~~~~g~ 705 (723)
|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+ | |++++|++|+++ +.|+
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~-----d~i~~l~~G~i~-~~~~ 235 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKP-----DYVHVMQNGKII-KTGD 235 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhC-----CEEEEEeCCEEE-EecC
Confidence 999999999999999999999999999999999876 36899999999999887 6 499999999997 4577
Q ss_pred HH
Q 048654 706 FE 707 (723)
Q Consensus 706 ~~ 707 (723)
++
T Consensus 236 ~~ 237 (252)
T CHL00131 236 AE 237 (252)
T ss_pred hh
Confidence 76
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=305.37 Aligned_cols=204 Identities=23% Similarity=0.331 Sum_probs=152.1
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|++++|+++.+ |+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+..+......
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~-------- 68 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPA-------- 68 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCcCCHh--------
Confidence 478999999987653 99999999999999999999999999999998754 456676666554322110
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
+..++++.+.... .....+.+++..... .... ......++.++++.+|+.. ..++++.+||||
T Consensus 69 -------~~~i~~~~q~~~~------~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G 132 (211)
T cd03298 69 -------DRPVSMLFQENNL------FAHLTVEQNVGLGLS--PGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGG 132 (211)
T ss_pred -------HccEEEEeccccc------CCCCcHHHHHhcccc--cccCccHHHHHHHHHHHHHcCCHH-HHhCCcccCCHH
Confidence 0112222111100 001122222211110 0001 1234567889999999974 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
|||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 133 ~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 999999999999999999999999999999999999998754 5799999999999999999999999999863
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=332.86 Aligned_cols=211 Identities=24% Similarity=0.315 Sum_probs=164.5
Q ss_pred CCCeEEEEEEEEEcCCCc-ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCcee-EEEEcccc
Q 048654 492 TPPLLQLIEVSFSYPNRE-DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLR-IGRYSQHF 569 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~-~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~-ig~~~q~~ 569 (723)
..++++++||++.|++.. .++|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++... +++ ...+
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~-~~~l 96 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAI-SSGL 96 (549)
T ss_pred ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEe-cccc
Confidence 356899999999997642 3589999999999999999999999999999999999999999999987542 222 1112
Q ss_pred ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCC
Q 048654 570 VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH 649 (723)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~ 649 (723)
...+++.++.... .. ..........+.+..+++.+++.... ++++.+|||||||||+|||||+.+|+||||||||+|
T Consensus 97 ~~~lTV~EnL~l~-~~-~~~~~~~e~~e~i~elLe~lgL~~~l-d~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 97 NGQLTGIENIELK-GL-MMGLTKEKIKEIIPEIIEFADIGKFI-YQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred CCCCcHHHHHHhh-hh-hcCCCHHHHHHHHHHHHHHcCChhHh-hCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 2223333332110 11 11110001123466789999997544 467899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 650 LDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 650 LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
||+.++..+.+.|.++ +.|||+||||++++..+|| ++++|++|+++. .|+++++...
T Consensus 174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~D-----rIivL~~GkIv~-~G~~~el~~~ 233 (549)
T PRK13545 174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCT-----KALWLHYGQVKE-YGDIKEVVDH 233 (549)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHHhh
Confidence 9999999999999876 3699999999999999995 999999999975 5787776544
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=315.00 Aligned_cols=222 Identities=19% Similarity=0.261 Sum_probs=157.8
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..+|+++||++.|+++.+|+||||+|.+|+++||+|+||||||||+++|+|+....|..|+|.+.+.++..........
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~- 83 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH- 83 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe-
Confidence 3469999999999988999999999999999999999999999999999997322355677777665543221111000
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHH---h---cCchHHHHHHHHHHHhCCCCccccCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQ---I---LGSDAAEAQASKILAGLGFTKEMQGR 316 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~---~~~~~~~~~~~~~L~~lgl~~~~~~~ 316 (723)
..+.++.+.... .......+.+...+.... . ........++.++|+.+|+.....++
T Consensus 84 -----------~~~~~~~q~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 146 (252)
T CHL00131 84 -----------LGIFLAFQYPIE------IPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSR 146 (252)
T ss_pred -----------eeEEEEeccccc------cccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcc
Confidence 000111110000 000011111111110000 0 01112345678899999996334467
Q ss_pred CCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhh-CCEEEEEe
Q 048654 317 PTK-SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTV-CTEIIHLH 391 (723)
Q Consensus 317 ~~~-~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~i-ad~Ii~L~ 391 (723)
++. .|||||+|||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+ ||+|++|+
T Consensus 147 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~ 226 (252)
T CHL00131 147 NVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQ 226 (252)
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEe
Confidence 776 59999999999999999999999999999999999999999999865 57999999999999887 89999999
Q ss_pred CCEEEEecCChh
Q 048654 392 DQKLHFYRGNFD 403 (723)
Q Consensus 392 ~G~i~~~~g~~~ 403 (723)
+|+++ +.|+.+
T Consensus 227 ~G~i~-~~~~~~ 237 (252)
T CHL00131 227 NGKII-KTGDAE 237 (252)
T ss_pred CCEEE-EecChh
Confidence 99996 456654
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=312.76 Aligned_cols=207 Identities=23% Similarity=0.336 Sum_probs=160.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-----------
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK----------- 559 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~----------- 559 (723)
-+++||++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 368899999974 358999999999999999999999999999999999986 47999987652
Q ss_pred --eeEEEEccccccc-cCccccHHHHHHhhCCCCCC-CcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHHHHHH
Q 048654 560 --LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEG-LSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 560 --~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv~lAr 632 (723)
..++|++|...-. .++.++.. +.......... ......+..+++.+|+... ...+++..|||||||||+|||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVA-YGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 2478999874211 12222221 11111110000 0122446788999998641 223567899999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+|+.+|+||||||||+|||+.++..+.+.|.++. .|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~ 236 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSD-----RVAFFQSGRIVE-YNTTQEIF 236 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcC-----EEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999999998874 689999999999999995 999999999974 57777764
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
.
T Consensus 237 ~ 237 (251)
T PRK14244 237 K 237 (251)
T ss_pred c
Confidence 3
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=310.04 Aligned_cols=206 Identities=24% Similarity=0.337 Sum_probs=153.2
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
++|+++||++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+......
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~------ 77 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDISTLKPE------ 77 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEcCcCCHH------
Confidence 369999999999989999999999999999999999999999999999998654 456666666554322111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
.++..++++.+.... . ...+.+++.... .+ ........++.++++.+|+.....++++.+|||
T Consensus 78 -------~~~~~i~~~~q~~~l------~-~~tv~enl~~~~-~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 140 (225)
T PRK10247 78 -------IYRQQVSYCAQTPTL------F-GDTVYDNLIFPW-QI--RNQQPDPAIFLDDLERFALPDTILTKNIAELSG 140 (225)
T ss_pred -------HHHhccEEEeccccc------c-cccHHHHHHhHH-hh--cCCChHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 011222332221110 0 112222222111 11 111122456788999999964445789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe--CCEE
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH--DQKL 395 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~--~G~i 395 (723)
||+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++. .||+|++|+ .|++
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEM 217 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchH
Confidence 9999999999999999999999999999999999999988764 579999999999996 699999996 4554
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=314.44 Aligned_cols=223 Identities=21% Similarity=0.297 Sum_probs=161.4
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeeecCCChHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.++|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..+ .|..|+|.+.+..+......
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~-- 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS-- 99 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc--
Confidence 3479999999999988999999999999999999999999999999999998642 14667787766554211100
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhCCCC---ccccC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS-DAAEAQASKILAGLGFT---KEMQG 315 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~---~~~~~ 315 (723)
...++..++++.+.... . ...+.+++..... ...... ......+.++++.+++. ....+
T Consensus 100 ---------~~~~~~~i~~v~q~~~~------~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 162 (271)
T PRK14238 100 ---------VEELRTNVGMVFQKPNP------F-PKSIYDNVTYGPK-IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLH 162 (271)
T ss_pred ---------HHHHhhhEEEEecCCcc------c-cccHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHh
Confidence 00112223333221110 0 0122222221111 111111 12244567777777532 12346
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 163 ~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 242 (271)
T PRK14238 163 DNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNG 242 (271)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999999876 479999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++.+ |+..++
T Consensus 243 ~i~~~-g~~~~~ 253 (271)
T PRK14238 243 YVNEY-DDTDKI 253 (271)
T ss_pred EEEEe-CCHHHH
Confidence 99754 666554
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=316.31 Aligned_cols=219 Identities=20% Similarity=0.236 Sum_probs=161.5
Q ss_pred ceEEEeEEEEeCC------eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHH
Q 048654 165 DITIDNFSVAARG------KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~------~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~ 238 (723)
+|+++|++++|++ +++|+|+||+|.+|++++|+|+||||||||+++|+|++.| ..|.|.+.+..+......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~- 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDTSDEENL- 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeccccccH-
Confidence 5899999999963 5799999999999999999999999999999999998765 456676666554321100
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
..++..++++.+.... ......+.+.+..... ...........++.++++.+|+.. ..++++
T Consensus 81 -----------~~~~~~i~~v~q~~~~-----~~~~~~v~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~ 142 (280)
T PRK13633 81 -----------WDIRNKAGMVFQNPDN-----QIVATIVEEDVAFGPE-NLGIPPEEIRERVDESLKKVGMYE-YRRHAP 142 (280)
T ss_pred -----------HHHhhheEEEecChhh-----hhccccHHHHHHhhHh-hcCCCHHHHHHHHHHHHHHCCCHh-HhhCCc
Confidence 0111222222221000 0000011222211111 111223344567899999999974 457999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++.. ||++++|++|+
T Consensus 143 ~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~ 221 (280)
T PRK13633 143 HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGK 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999764 5799999999999986 99999999999
Q ss_pred EEEecCChhhHH
Q 048654 395 LHFYRGNFDDFE 406 (723)
Q Consensus 395 i~~~~g~~~~~~ 406 (723)
++. .|+.+++.
T Consensus 222 i~~-~g~~~~~~ 232 (280)
T PRK13633 222 VVM-EGTPKEIF 232 (280)
T ss_pred EEE-ecCHHHHh
Confidence 964 57776653
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=314.05 Aligned_cols=208 Identities=23% Similarity=0.278 Sum_probs=162.8
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~------- 559 (723)
..++|+++||++.|++. .+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 17 ~~~~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCceEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 45699999999999753 589999999999999999999999999999999999863 6899987652
Q ss_pred ------eeEEEEccccccccCccccHHHHHHhh-CCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHH
Q 048654 560 ------LRIGRYSQHFVDLLTMEETPVSYLLRL-HPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVV 629 (723)
Q Consensus 560 ------~~ig~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~ 629 (723)
..++|++|+... +. .++...+... ............+..+++.+++.. ....+++.+|||||+|||+
T Consensus 95 ~~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNP-FP--KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred hhHHHhhcEEEEccCCcc-cc--ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence 247899987421 11 1222222110 000000012234566788888631 1234677899999999999
Q ss_pred HHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEE---------CCe
Q 048654 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVE---------NGT 698 (723)
Q Consensus 630 lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~---------~G~ 698 (723)
|||||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| ++++|+ +|+
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVAD-----WTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEecccccccccCce
Confidence 9999999999999999999999999999999999874 689999999999999995 999997 899
Q ss_pred EEecCCCHHHHH
Q 048654 699 VSRFPGTFEEYK 710 (723)
Q Consensus 699 i~~~~g~~~~~~ 710 (723)
++. .|+++++.
T Consensus 247 ~~~-~g~~~~~~ 257 (274)
T PRK14265 247 LVE-FSPTEQMF 257 (274)
T ss_pred EEE-eCCHHHHH
Confidence 985 58887764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=309.07 Aligned_cols=204 Identities=30% Similarity=0.449 Sum_probs=163.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
|+++|+++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~ 78 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVF 78 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEe
Confidence 4689999999753 5899999999999999999999999999999999999999999987652 2478998
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|... ...++.++.. +....+. .......+.+.++++.+++.... ++++..|||||+||++|||+|+.+|+|||||
T Consensus 79 q~~~~~~~~t~~enl~-~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 79 QHYALFKHLTVRDNIA-FGLEIRK-HPKAKIKARVEELLELVQLEGLG-DRYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred cChhhccCCcHHHHHH-hHHHhcC-CCHHHHHHHHHHHHHHcCCHhHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8642 2223333321 1111111 00001234567899999997543 4667899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 645 EPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|||+|||+.+...+.++|.++ +.|||++||+++++.++|| +|++|++|+++. .|+.+++.
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d-----~i~~l~~g~i~~-~~~~~~~~ 219 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVAD-----RIVVMSNGKIEQ-IGSPDEVY 219 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC-----EEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999875 4689999999999999995 999999999975 47777664
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=310.09 Aligned_cols=220 Identities=22% Similarity=0.291 Sum_probs=161.3
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC--C-CCcEEEEEeeeeecCCChHHHHHH
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP--V-PKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~--~-~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
-+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..+ . |..|+|.+.+..+......
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~----- 80 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN----- 80 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc-----
Confidence 4689999999989999999999999999999999999999999999998652 2 3578887766543211100
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL--GSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
...++..++++.+.... . ...+.+++.... ..... ........+.++++.+|+.. ...+++
T Consensus 81 ------~~~~~~~i~~v~q~~~~------~-~~tv~~ni~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (251)
T PRK14244 81 ------VVLLRAKVGMVFQKPNP------F-PKSIYDNVAYGP-KLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDS 146 (251)
T ss_pred ------hHHHhhhEEEEecCccc------c-cCCHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcC
Confidence 00122233333221110 0 012222222111 11111 11233456788999999853 134678
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 147 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 147 AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999865 57999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+.+++
T Consensus 227 ~~-~~~~~~~ 235 (251)
T PRK14244 227 VE-YNTTQEI 235 (251)
T ss_pred EE-eCCHHHH
Confidence 74 4665544
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=298.20 Aligned_cols=220 Identities=21% Similarity=0.282 Sum_probs=165.9
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH-HHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI-QAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~-~~~ 242 (723)
++++++||+..||...+|++|||++++||+++|+|+||+||||||++|+|+.. +.+|+|.|.++++.......+ ..-
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCC
Confidence 46999999999999999999999999999999999999999999999998754 347888998988876543321 111
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS-DAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
+.+.|+-..++..++ +.+++.-... .... .......+++.+.|---.+..+++..+|
T Consensus 80 i~~VPegR~iF~~LT-------------------VeENL~~g~~---~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~L 137 (237)
T COG0410 80 IAYVPEGRRIFPRLT-------------------VEENLLLGAY---ARRDKEAQERDLEEVYELFPRLKERRNQRAGTL 137 (237)
T ss_pred eEeCcccccchhhCc-------------------HHHHHhhhhh---cccccccccccHHHHHHHChhHHHHhcCcccCC
Confidence 222233333332222 2222211100 0011 1111125566666632235567899999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||||.++|||||+.+|++|||||||.||-|.-+..|.+.|+++ +.|||+|.++..++.+++||.++|++|+++
T Consensus 138 SGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv- 216 (237)
T COG0410 138 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV- 216 (237)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-
Confidence 999999999999999999999999999999999999999988765 349999999999999999999999999996
Q ss_pred ecCChhhHHhh
Q 048654 398 YRGNFDDFESG 408 (723)
Q Consensus 398 ~~g~~~~~~~~ 408 (723)
+.|+.+++...
T Consensus 217 ~~G~~~eL~~~ 227 (237)
T COG0410 217 LSGTAAELLAD 227 (237)
T ss_pred EecCHHHHhcC
Confidence 56888776543
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=310.95 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=162.1
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~-------- 559 (723)
.++|+++|+++.|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 4 ~~~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 4 EIILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred cceEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 4689999999999753 589999999999999999999999999999999999763 4899987652
Q ss_pred -----eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|..... .++.++.. +................+.++++.+++... ...+++..|||||||||+|
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPKSIYENVA-YGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI 160 (253)
T ss_pred hhhhhceEEEEecCCccCcccHHHHHH-hhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence 2378998874211 12222221 111111100000123356678888887421 1246678999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||+|+.+|+||||||||+|||+.++..+.++|.++. .|||++|||++++..+|| +|++|++|+++. .|++++
T Consensus 161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~ 234 (253)
T PRK14261 161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSD-----YTGFMYLGKLIE-FDKTTQ 234 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCC-----EEEEEECCEEEE-cCCHHH
Confidence 999999999999999999999999999999998874 699999999999999985 999999999975 577776
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
+.
T Consensus 235 ~~ 236 (253)
T PRK14261 235 IF 236 (253)
T ss_pred HH
Confidence 64
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=313.78 Aligned_cols=207 Identities=23% Similarity=0.261 Sum_probs=162.2
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~-------- 559 (723)
.++|+++||++.|++. .+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 8 ~~~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 8 ETVLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred ceEEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 4689999999999753 58999999999999999999999999999999999986 47999987652
Q ss_pred -----eeEEEEccccccccCccccHHHHHHhhC-CCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVDLLTMEETPVSYLLRLH-PDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|+..- +. .+..+.+.... .........+.+..++..+++.. ....+++.+|||||||||+|
T Consensus 86 ~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred hHHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHH
Confidence 247899987421 11 12222221100 00000112344566778877742 12345678999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEE---------CCeE
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVE---------NGTV 699 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~---------~G~i 699 (723)
||||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| +|++|+ +|+|
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d-----~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSD-----MTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEEecccccccccCceE
Confidence 999999999999999999999999999999998874 699999999999999995 999998 7999
Q ss_pred EecCCCHHHHH
Q 048654 700 SRFPGTFEEYK 710 (723)
Q Consensus 700 ~~~~g~~~~~~ 710 (723)
+. .|+++++.
T Consensus 238 ~~-~~~~~~~~ 247 (264)
T PRK14243 238 VE-FDRTEKIF 247 (264)
T ss_pred EE-eCCHHHHH
Confidence 74 57887764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=337.32 Aligned_cols=244 Identities=25% Similarity=0.327 Sum_probs=179.4
Q ss_pred HhhhhhcccccccccCccccccCCccccCCccceEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEECCCCccHHHHHH
Q 048654 133 EALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGK---ELLKSTSVRISHGKRYGLVGPNGMGKSTLLK 209 (723)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~nls~~y~~~---~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk 209 (723)
++++|-+|+.+.+..+ . ..........|+++||+|.|+.+ +||+|+||+|++||++|||||||+||||++.
T Consensus 439 ~rvFel~dr~P~i~~~-G-----~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTias 512 (716)
T KOG0058|consen 439 ERVFELMDRKPRIPLT-G-----TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIAS 512 (716)
T ss_pred HHHHHHhccCCCCCCC-C-----ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHH
Confidence 5788888888877555 2 11111234569999999999765 5999999999999999999999999999999
Q ss_pred HHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH--
Q 048654 210 LLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK-- 287 (723)
Q Consensus 210 ~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 287 (723)
+|..+|.| ..|+|.+.+.++...+ +..+++.++.+.+-... ..-.+.+++......
T Consensus 513 LL~rfY~P--tsG~IllDG~~i~~~~-------------~~~lr~~Ig~V~QEPvL-------Fs~sI~eNI~YG~~~~t 570 (716)
T KOG0058|consen 513 LLLRFYDP--TSGRILLDGVPISDIN-------------HKYLRRKIGLVGQEPVL-------FSGSIRENIAYGLDNAT 570 (716)
T ss_pred HHHHhcCC--CCCeEEECCeehhhcC-------------HHHHHHHeeeeecccee-------ecccHHHHHhcCCCCCC
Confidence 99988865 4556666665554322 22344555544332111 011112222111000
Q ss_pred HHhcCchHHHHHHHHHHHhC--CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 288 LQILGSDAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 288 l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
...+......+.+++++..| |+.... +.+..+||||||||+||||||+++|.||||||.||+||.++...+++.|.+
T Consensus 571 ~e~i~~AAk~ANah~FI~~~p~gY~T~V-GEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 571 DEEIEAAAKMANAHEFITNFPDGYNTVV-GEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR 649 (716)
T ss_pred HHHHHHHHHHhChHHHHHhCcccccccc-CCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence 00011123346678889888 776544 788899999999999999999999999999999999999999999999976
Q ss_pred c--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChhhHHh
Q 048654 366 W--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407 (723)
Q Consensus 366 ~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~~~~~ 407 (723)
. ++|||+|.|+++.+.+ ||+|+++++|+++. .|+++++.+
T Consensus 650 ~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E-~G~h~eLl~ 691 (716)
T KOG0058|consen 650 LMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVE-MGTHDELLS 691 (716)
T ss_pred hhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEe-cccHHHHhh
Confidence 5 5899999999999997 99999999999975 588777643
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=312.98 Aligned_cols=223 Identities=22% Similarity=0.268 Sum_probs=162.9
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~ 238 (723)
+.++|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..+.+ ..|.|.+.++++......
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~- 95 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN- 95 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch-
Confidence 4457999999999998899999999999999999999999999999999999865433 467887776654321100
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC---ccccC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT---KEMQG 315 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~ 315 (723)
...++..++++.+.... . ...+.+++.... ..... .......+.++++.+++. ....+
T Consensus 96 ----------~~~~~~~i~~v~q~~~l------~-~~tv~~nl~~~~-~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (274)
T PRK14265 96 ----------SVKLRRQVGMVFQRPNP------F-PKSIYENIAFAP-RANGY-KGNLDELVEDSLRRAAIWEEVKDKLK 156 (274)
T ss_pred ----------hHHHhhcEEEEccCCcc------c-cccHHHHHHhHH-HhcCc-hHHHHHHHHHHHHHcccchhhHHHhc
Confidence 00112223333221111 0 011222222111 00001 112234566778888763 12346
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEe--
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLH-- 391 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~-- 391 (723)
+++.+|||||+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||++++|+
T Consensus 157 ~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~ 236 (274)
T PRK14265 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTE 236 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecc
Confidence 889999999999999999999999999999999999999999999999876 4799999999999999999999997
Q ss_pred -------CCEEEEecCChhhH
Q 048654 392 -------DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 -------~G~i~~~~g~~~~~ 405 (723)
+|+++. .|+.+++
T Consensus 237 ~~~~~~~~G~~~~-~g~~~~~ 256 (274)
T PRK14265 237 IDEYGKRRGKLVE-FSPTEQM 256 (274)
T ss_pred cccccccCceEEE-eCCHHHH
Confidence 799974 4776665
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=344.45 Aligned_cols=207 Identities=27% Similarity=0.346 Sum_probs=164.2
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CCCcceEEECC---------------
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL--SPTEGEVRRSQ--------------- 558 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~--~p~~G~I~~~~--------------- 558 (723)
|+++|++++|++ ..+|+|+||+|.+|++++|+|||||||||||++|+|++ +|++|+|.+.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 478999999975 35899999999999999999999999999999999997 79999998751
Q ss_pred -----------------------------ceeEEEEcccc---ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhC
Q 048654 559 -----------------------------KLRIGRYSQHF---VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF 606 (723)
Q Consensus 559 -----------------------------~~~ig~~~q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 606 (723)
+..++|++|.. ...+++.++... ...... ........++.++|+.+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~-~~~~~~-~~~~~~~~~~~~~l~~~ 156 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLE-ALEEIG-YEGKEAVGRAVDLIEMV 156 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHH-HHHHcC-CCHHHHHHHHHHHHHHc
Confidence 12378998862 122233333211 111111 10001234678899999
Q ss_pred CCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHh
Q 048654 607 GLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRV 682 (723)
Q Consensus 607 gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~ 682 (723)
||.... ++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+
T Consensus 157 gl~~~~-~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~ 235 (520)
T TIGR03269 157 QLSHRI-THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235 (520)
T ss_pred CChhhh-hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 997544 4677999999999999999999999999999999999999999999888775 35899999999999999
Q ss_pred cCcCCCcEEEEEECCeEEecCCCHHHHHHHH
Q 048654 683 CDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713 (723)
Q Consensus 683 ~d~~~~drv~vl~~G~i~~~~g~~~~~~~~~ 713 (723)
|| +|++|++|+|+. .|+++++....
T Consensus 236 ~d-----~i~~l~~G~i~~-~g~~~~~~~~~ 260 (520)
T TIGR03269 236 SD-----KAIWLENGEIKE-EGTPDEVVAVF 260 (520)
T ss_pred cC-----EEEEEeCCEEee-ecCHHHHHHHH
Confidence 95 999999999974 68888776543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=313.59 Aligned_cols=218 Identities=21% Similarity=0.323 Sum_probs=160.8
Q ss_pred cceEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAAR--GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~--~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.+|+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~~~~~~~--- 80 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITISKENLKE--- 80 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCcCCHHH---
Confidence 4699999999995 56899999999999999999999999999999999998754 4566776665543211111
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
++..++++.+.... ......+.+++..... ...+.......++.++++.+|+.. ..++.+.+|
T Consensus 81 ----------~~~~i~~v~q~~~~-----~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 143 (271)
T PRK13632 81 ----------IRKKIGIIFQNPDN-----QFIGATVEDDIAFGLE-NKKVPPKKMKDIIDDLAKKVGMED-YLDKEPQNL 143 (271)
T ss_pred ----------HhcceEEEEeCHHH-----hcCcccHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCHH-HhhCCcccC
Confidence 11222222211000 0001122222221111 111223334567889999999974 457899999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
|||||||++|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+|||+++++. +||+|++|++|+++.
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~ 222 (271)
T PRK13632 144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA 222 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999865 379999999999996 799999999999964
Q ss_pred ecCChhhH
Q 048654 398 YRGNFDDF 405 (723)
Q Consensus 398 ~~g~~~~~ 405 (723)
.|+.+++
T Consensus 223 -~g~~~~~ 229 (271)
T PRK13632 223 -QGKPKEI 229 (271)
T ss_pred -ecCHHHH
Confidence 4666554
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=308.39 Aligned_cols=201 Identities=33% Similarity=0.443 Sum_probs=154.0
Q ss_pred EEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 496 LQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 496 l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
|+++|+++.|++. ..++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753 235899999999999999999999999999999999999999999998762 2488
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHH---------HHHhC--CCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA---------KLGKF--GLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~~--gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
|++|...- + ..+....+ ....... ....+.. ++..+ ++.... .+++.+|||||||||+|||
T Consensus 81 ~~~q~~~~-~--~~tv~e~l-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 81 LVSQEPVL-F--DGTIAENI-RYGKPDA---TDEEVEEAAKKANIHDFIMSLPDGYDTLV-GERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred EECCchhh-h--hhhHHHHh-hccCCCC---CHHHHHHHHHHcChHHHHHhhccccceee-ccCCccCCHHHHHHHHHHH
Confidence 99886421 1 11222222 1111110 1111222 22333 333222 3456899999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|++|||||||+|||+.++..+.+.|.++. .+||++|||++++. +|| +|++|++|+++ +.|+.+++.
T Consensus 153 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d-----~v~~l~~G~i~-~~~~~~~~~ 225 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NAD-----LIAVLQNGQVV-EQGTHDELM 225 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCC-----EEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999999999998774 58999999999997 784 99999999997 457777765
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
.
T Consensus 226 ~ 226 (238)
T cd03249 226 A 226 (238)
T ss_pred h
Confidence 4
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=291.61 Aligned_cols=218 Identities=27% Similarity=0.344 Sum_probs=163.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++..++.+|+++||++.+||+++|+||||||||||||.|+|... |+.|.+.+++..........
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~------ 72 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEE------ 72 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHH------
Confidence 4889999999999999999999999999999999999999999999998765 45667777766554433222
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCch--HHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSD--AAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
+....+.+++.+...+ .+.+.+-+. +-..-...+.. +..+.++.+|...++. .+..|...+||
T Consensus 73 -------lA~~raVlpQ~s~laF------pFtv~eVV~-mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LS 137 (259)
T COG4559 73 -------LARHRAVLPQNSSLAF------PFTVQEVVQ-MGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLS 137 (259)
T ss_pred -------HHHHhhhcccCccccc------ceEHHHHHH-hcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcC
Confidence 2233344443322211 111111111 00000111222 4445578899999886 45679999999
Q ss_pred hHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 323 GGWRMRISLARALFV------QPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 323 GGqrQRvaLArAL~~------~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
|||||||.|||+|++ ++++|+|||||++||+..+..++++.+++ +..|+.|-||++.+..+||||++|++|
T Consensus 138 GGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~G 217 (259)
T COG4559 138 GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQG 217 (259)
T ss_pred chHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCC
Confidence 999999999999976 44699999999999999999888887765 579999999999999999999999999
Q ss_pred EEEEecCChhhHH
Q 048654 394 KLHFYRGNFDDFE 406 (723)
Q Consensus 394 ~i~~~~g~~~~~~ 406 (723)
+++. .|.+.+..
T Consensus 218 rv~a-~g~p~~vl 229 (259)
T COG4559 218 RVIA-SGSPQDVL 229 (259)
T ss_pred eEee-cCCHHHhc
Confidence 9975 57776654
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=343.12 Aligned_cols=200 Identities=26% Similarity=0.356 Sum_probs=161.1
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------ee
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ 561 (723)
++|+++|+++.|++. .+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|++++. ..
T Consensus 3 ~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 3 PYLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred ceEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 589999999999753 5899999999999999999999999999999999999999999988652 24
Q ss_pred EEEEccccc--cccCccccHHHHHHhh-CCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 562 IGRYSQHFV--DLLTMEETPVSYLLRL-HPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 562 ig~~~q~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
++|++|... ..+++.++........ +.........+.+.++|+.+||.... ++++.+|||||||||+|||||+.+|
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-DTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-CCchhhCCHHHHHHHHHHHHHHhCC
Confidence 899999742 2223333221100000 00000001234577899999997544 4678999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
+||||||||+|||+.++..|.++|.++ +.|||+||||++++..+|| +|++|++|+|+.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d-----~i~~l~~G~i~~ 220 (501)
T PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCD-----AITVFKDGRYVA 220 (501)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEe
Confidence 999999999999999999999999876 3689999999999999995 999999999974
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=309.75 Aligned_cols=187 Identities=30% Similarity=0.419 Sum_probs=147.5
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce------eEEEEccccc--cccCccccHHHHHH
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL------RIGRYSQHFV--DLLTMEETPVSYLL 584 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~------~ig~~~q~~~--~~~~~~~~~~~~~~ 584 (723)
|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. ..+|++|... ..+++.++......
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999987642 2478888642 22333333221111
Q ss_pred hhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH
Q 048654 585 RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664 (723)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~ 664 (723)
..............+..+++.+||.... ++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 159 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAA-DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHH-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 0111110001233577899999997544 467799999999999999999999999999999999999999999999987
Q ss_pred c----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 665 F----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 665 ~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
+ +.|||+||||++++..+|| +|++|++|+++. .|+.
T Consensus 160 ~~~~~~~tii~~sH~~~~~~~~~d-----~v~~l~~G~i~~-~~~~ 199 (230)
T TIGR01184 160 IWEEHRVTVLMVTHDVDEALLLSD-----RVVMLTNGPAAN-IGQI 199 (230)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhcC-----EEEEEeCCcEec-ccCc
Confidence 5 3589999999999999995 999999999974 3543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=308.00 Aligned_cols=223 Identities=21% Similarity=0.299 Sum_probs=164.8
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC--C-CCCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI--P-VPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~--~-~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
..|+++||++.|+++++|+|+||+|.+|++++|+|+|||||||||++|+|+.. + .+..|+|.+.++.+......
T Consensus 2 ~~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~--- 78 (250)
T PRK14266 2 YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD--- 78 (250)
T ss_pred cEEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc---
Confidence 35899999999998899999999999999999999999999999999999753 2 13577888877665321100
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
...++..++++.+.... . ...+.+++.................++.++++.+|+.. ...+++
T Consensus 79 --------~~~~~~~i~~~~q~~~~------~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 143 (250)
T PRK14266 79 --------VVELRKKVGMVFQKPNP------F-PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKS 143 (250)
T ss_pred --------HHHHhhheEEEecCCcc------C-cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCC
Confidence 01122233333321110 0 11222222211111001111234567888999998742 234788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++|++
T Consensus 144 ~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 144 ALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999865 47999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
.. .|+.+++
T Consensus 224 ~~-~g~~~~~ 232 (250)
T PRK14266 224 IE-SGLTDQI 232 (250)
T ss_pred EE-eCCHHHH
Confidence 74 5776655
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=343.92 Aligned_cols=206 Identities=24% Similarity=0.358 Sum_probs=163.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CcceEEECCc------------e
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP--TEGEVRRSQK------------L 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p--~~G~I~~~~~------------~ 560 (723)
+|+++|+++.|++ ..+|+||||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++. .
T Consensus 1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 5789999999975 3589999999999999999999999999999999999987 7999998762 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCC--CCCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPD--QEGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
.++|++|... ..+++.++.. +....... .... .....+.++++.+++......+++.+|||||||||+|||||+
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIF-LGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHH-hhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 4899999742 2233333321 10001000 0000 123457789999999755444678999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .++++++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~ 228 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCD-----TICVIRDGQHVA-TKDMSTM 228 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCC-----EEEEEeCCeEee-ecCcccC
Confidence 999999999999999999999999998876 3589999999999999995 999999999974 4555443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=310.73 Aligned_cols=209 Identities=24% Similarity=0.296 Sum_probs=162.4
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----cceEEECCc---------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-----EGEVRRSQK--------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-----~G~I~~~~~--------- 559 (723)
++|+++|+++.|++. .+|+|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 479999999999753 4899999999999999999999999999999999999985 788876542
Q ss_pred ----eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 ----~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|...- ..++.++.... ...............+..+++.+++.. ....+++.+|||||+|||+||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYG-VKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 137888886321 12222222111 111100000012345677889998743 123467789999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC-----CeEEec
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN-----GTVSRF 702 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~-----G~i~~~ 702 (723)
|+|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+||||++++..+|| +|++|++ |+++.
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d-----~i~~l~~~~~~~G~i~~- 236 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD-----FTAFFKGNENRIGQLVE- 236 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcC-----EEEEEccCCCcCceEEE-
Confidence 9999999999999999999999999999999874 4689999999999999995 9999999 99974
Q ss_pred CCCHHHHHH
Q 048654 703 PGTFEEYKE 711 (723)
Q Consensus 703 ~g~~~~~~~ 711 (723)
.|+++++.+
T Consensus 237 ~~~~~~~~~ 245 (261)
T PRK14258 237 FGLTKKIFN 245 (261)
T ss_pred eCCHHHHHh
Confidence 588877643
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=305.20 Aligned_cols=214 Identities=27% Similarity=0.365 Sum_probs=160.0
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|.++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|++.| ..|.|.+.++.+......
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~-------- 70 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPH-------- 70 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChh--------
Confidence 4689999999999999999999999999999999999999999999998765 456676666554321110
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
...++++.+.... .....+.+++..... ...........++..+++.+|+.. ..++.+..|||||
T Consensus 71 -------~~~i~~~~q~~~~------~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~ 135 (232)
T cd03300 71 -------KRPVNTVFQNYAL------FPHLTVFENIAFGLR-LKKLPKAEIKERVAEALDLVQLEG-YANRKPSQLSGGQ 135 (232)
T ss_pred -------hcceEEEeccccc------CCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHH
Confidence 0111222111000 001122222221111 111122334567888999999974 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
+|||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||++||+++++..+||+|++|++|++.. .|+
T Consensus 136 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~-~~~ 214 (232)
T cd03300 136 QQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ-IGT 214 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCC
Confidence 99999999999999999999999999999999999998764 5799999999999999999999999999964 465
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
..++
T Consensus 215 ~~~~ 218 (232)
T cd03300 215 PEEI 218 (232)
T ss_pred HHHH
Confidence 5443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=312.02 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=160.8
Q ss_pred cceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
++|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+......
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~---- 79 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAITDDNFE---- 79 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHH----
Confidence 36999999999975 4699999999999999999999999999999999998654 456777766654322111
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
.++..++++.+.... ......+.+++..... ...........++.++++.+|+.+ ..++++.+|
T Consensus 80 ---------~~~~~i~~v~q~~~~-----~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 143 (269)
T PRK13648 80 ---------KLRKHIGIVFQNPDN-----QFVGSIVKYDVAFGLE-NHAVPYDEMHRRVSEALKQVDMLE-RADYEPNAL 143 (269)
T ss_pred ---------HHHhheeEEEeChHH-----hcccccHHHHHHhhHH-hcCCCHHHHHHHHHHHHHHcCCch-hhhCCcccC
Confidence 112223333221100 0000011122211111 011122334567889999999974 457899999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||||||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+|||+++++.. ||+|++|++|+++.
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~ 222 (269)
T PRK13648 144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK 222 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998764 5799999999999986 99999999999974
Q ss_pred ecCChhhH
Q 048654 398 YRGNFDDF 405 (723)
Q Consensus 398 ~~g~~~~~ 405 (723)
.|+.+++
T Consensus 223 -~g~~~~~ 229 (269)
T PRK13648 223 -EGTPTEI 229 (269)
T ss_pred -ecCHHHH
Confidence 5776554
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=311.11 Aligned_cols=208 Identities=24% Similarity=0.299 Sum_probs=162.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc---------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK--------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~--------- 559 (723)
++|+++||++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 47999999999975 3589999999999999999999999999999999999985 4899987653
Q ss_pred ----eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 ----~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|...- ..++.++.... .............+.+.+++..+++.. ....+++.+|||||||||+||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYG-VRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 148899987421 12333332111 111110000112345677888888842 223456789999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEE-----CCeEEecCC
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVE-----NGTVSRFPG 704 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~-----~G~i~~~~g 704 (723)
|||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| ++++|+ +|+++. .|
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d-----~i~~l~~~~~~~G~i~~-~~ 236 (259)
T PRK14260 163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSD-----FTAFFSTDESRIGQMVE-FG 236 (259)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC-----eEEEEeccCCCCceEEE-eC
Confidence 99999999999999999999999999999998874 699999999999999995 999997 599975 57
Q ss_pred CHHHHH
Q 048654 705 TFEEYK 710 (723)
Q Consensus 705 ~~~~~~ 710 (723)
+++++.
T Consensus 237 ~~~~~~ 242 (259)
T PRK14260 237 VTTQIF 242 (259)
T ss_pred CHHHHh
Confidence 887764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=307.23 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=157.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|++.. .|+||+|.+|++++|+||||||||||+++|+|+..|. .|+|.+.+..+......
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~------- 69 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPS------- 69 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCeecCcCChh-------
Confidence 378999999998654 3999999999999999999999999999999987654 55666666544321110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++++.+.... .....+.+++...... ..........++.++++.+|+.. ..++++.+||||
T Consensus 70 --------~~~i~~~~q~~~~------~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G 133 (232)
T PRK10771 70 --------RRPVSMLFQENNL------FSHLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIED-LLARLPGQLSGG 133 (232)
T ss_pred --------hccEEEEeccccc------ccCCcHHHHHhccccc-ccCCCHHHHHHHHHHHHHcCcHH-HHhCCcccCCHH
Confidence 0111222111000 0011222222111000 00011234567889999999964 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|
T Consensus 134 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g 212 (232)
T PRK10771 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDG 212 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeC
Confidence 999999999999999999999999999999999999988754 579999999999999999999999999996 457
Q ss_pred ChhhHH
Q 048654 401 NFDDFE 406 (723)
Q Consensus 401 ~~~~~~ 406 (723)
+++++.
T Consensus 213 ~~~~~~ 218 (232)
T PRK10771 213 PTDELL 218 (232)
T ss_pred CHHHHH
Confidence 776654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=310.20 Aligned_cols=221 Identities=23% Similarity=0.271 Sum_probs=161.5
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.|+++|++++|+++.+|+|+||+|++|++++|+|+|||||||||++|+|+..+. +..|.|.+.++++.......
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~--- 83 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL--- 83 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch---
Confidence 599999999999889999999999999999999999999999999999987643 12567777665542110000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL-GSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
..++..++++.+.... . ...+.+++.... ..... ......+++.++++.+++.. ...+++
T Consensus 84 --------~~~~~~i~~~~q~~~l------~-~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 147 (261)
T PRK14258 84 --------NRLRRQVSMVHPKPNL------F-PMSVYDNVAYGV-KIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKS 147 (261)
T ss_pred --------HHhhccEEEEecCCcc------C-cccHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCC
Confidence 0111222222211100 0 112222222111 11111 11233456788999998742 234788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC-
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD- 392 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~- 392 (723)
+.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++
T Consensus 148 ~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 148 ALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGN 227 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccC
Confidence 9999999999999999999999999999999999999999999988752 67999999999999999999999999
Q ss_pred ----CEEEEecCChhhH
Q 048654 393 ----QKLHFYRGNFDDF 405 (723)
Q Consensus 393 ----G~i~~~~g~~~~~ 405 (723)
|+++ +.|+.+++
T Consensus 228 ~~~~G~i~-~~~~~~~~ 243 (261)
T PRK14258 228 ENRIGQLV-EFGLTKKI 243 (261)
T ss_pred CCcCceEE-EeCCHHHH
Confidence 9986 45776655
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=306.88 Aligned_cols=191 Identities=28% Similarity=0.431 Sum_probs=152.2
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC----CcceEEECCc---------eeEEEEccccc----cccC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP----TEGEVRRSQK---------LRIGRYSQHFV----DLLT 574 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p----~~G~I~~~~~---------~~ig~~~q~~~----~~~~ 574 (723)
+|+||||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++. ..++|++|... ..++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 8999998763 25899998752 1122
Q ss_pred ccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC--CCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCH
Q 048654 575 MEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS--HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652 (723)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~--~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~ 652 (723)
+.++.... ....... .......+.++++.+++.. ....+++.+|||||||||+|||||+.+|+||||||||+|||+
T Consensus 81 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 81 MGNHAIET-LRSLGKL-SKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred HHHHHHHH-HHHcCcc-HHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 22221111 1111110 0112345788999999973 233467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 653 QSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 653 ~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
.++..+.+.|.++ +.|||+||||++++..+|| +|++|++|++.. .|+++++.
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~~ 214 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIAD-----EVAVMDDGRIVE-RGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHH
Confidence 9999999999875 3589999999999999995 999999999974 57887764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=304.42 Aligned_cols=193 Identities=26% Similarity=0.325 Sum_probs=152.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++|+++.|++....+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 6899999999753346899999999999999999999999999999999999999999988763 24889
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCC----------CcCCCCCCCHHHHHHHHHHHHH
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHN----------HLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~i~~LSGGqkqRv~lAral 634 (723)
++|... .+ ..+..+.+ ..+.. . ....+...++.+++.... ...++..|||||+|||+|||+|
T Consensus 83 ~~q~~~-l~--~~tv~enl-~~~~~---~-~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 83 IPQDPV-LF--SGTIRSNL-DPFGE---Y-SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred ECCCCc-cc--cchHHHHh-CcCCC---C-CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 998743 11 12333322 11111 1 123444555555553221 1246789999999999999999
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEec
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~ 702 (723)
+.+|++|||||||++||+.++..+.++|+++. .|||++|||.+++.. | |++++|++|+++..
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~-----d~i~~l~~g~~~~~ 218 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S-----DRILVLDKGRVVEF 218 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C-----CEEEEEECCeEEec
Confidence 99999999999999999999999999999864 689999999999975 7 49999999999743
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=311.10 Aligned_cols=221 Identities=19% Similarity=0.254 Sum_probs=161.1
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC---CCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV---PKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~---~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
++|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+..+. +..|.|.+.+..+.......
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~-- 86 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP-- 86 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh--
Confidence 4699999999999889999999999999999999999999999999999986432 35678877666543111000
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc---cccCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---EMQGRP 317 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~ 317 (723)
..++..++++.+.... . ...+.+++..... .... ......++..+++.+++.. ...+++
T Consensus 87 ---------~~~~~~i~~v~q~~~~------~-~~tv~enl~~~~~-~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 148 (264)
T PRK14243 87 ---------VEVRRRIGMVFQKPNP------F-PKSIYDNIAYGAR-INGY-KGDMDELVERSLRQAALWDEVKDKLKQS 148 (264)
T ss_pred ---------HHHhhhEEEEccCCcc------c-cccHHHHHHhhhh-hcCc-chHHHHHHHHHHHHhCchhhHHHHhcCC
Confidence 0112223333221100 0 0122222221111 0011 1123355667788887732 234688
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEe----
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLH---- 391 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~---- 391 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+|||+++++..+||+|++|+
T Consensus 149 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 149 GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELT 228 (264)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999876 4699999999999999999999998
Q ss_pred -----CCEEEEecCChhhH
Q 048654 392 -----DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 -----~G~i~~~~g~~~~~ 405 (723)
+|+++. .|+..++
T Consensus 229 ~~~~~~g~i~~-~~~~~~~ 246 (264)
T PRK14243 229 EGGGRYGYLVE-FDRTEKI 246 (264)
T ss_pred cccccCceEEE-eCCHHHH
Confidence 799864 4776655
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=310.50 Aligned_cols=217 Identities=20% Similarity=0.280 Sum_probs=159.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCC--CCcEEEEEeeeeecCCChHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPV--PKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~--~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
.|+++|++++| ++++|+|+||+|.+|++++|+|+||||||||+++|+|+..|. +..|+|.+.+..+... ..
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~---- 76 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--AL---- 76 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cc----
Confidence 58999999999 678999999999999999999999999999999999987651 1556777666544210 00
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc--ccCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE--MQGRPTKS 320 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~--~~~~~~~~ 320 (723)
....++++.+..... . .....+....... +...+......++.++++.+|+... ..++++.+
T Consensus 77 ---------~~~~i~~v~q~~~~~--~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 140 (254)
T PRK10418 77 ---------RGRKIATIMQNPRSA--F--NPLHTMHTHARET---CLALGKPADDATLTAALEAVGLENAARVLKLYPFE 140 (254)
T ss_pred ---------ccceEEEEecCCccc--c--CccccHHHHHHHH---HHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcc
Confidence 001122222211000 0 0001111111111 1111222234678899999999642 34788999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+|||+++++..+||+|++|++|+++
T Consensus 141 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~ 220 (254)
T PRK10418 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220 (254)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999988754 579999999999999999999999999996
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
..|+.+++
T Consensus 221 -~~~~~~~~ 228 (254)
T PRK10418 221 -EQGDVETL 228 (254)
T ss_pred -EecCHHHH
Confidence 45776555
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=305.85 Aligned_cols=197 Identities=25% Similarity=0.267 Sum_probs=152.0
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
+.++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~---------- 90 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSLLG---------- 90 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchhhc----------
Confidence 7889999999999999999999999999999999999999999999998654 4566666554321000
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
....+.. ...+.+++..... ...........++.++++.+|+.+ ..++++.+|||||
T Consensus 91 --------~~~~~~~-------------~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~ 147 (224)
T cd03220 91 --------LGGGFNP-------------ELTGRENIYLNGR-LLGLSRKEIDEKIDEIIEFSELGD-FIDLPVKTYSSGM 147 (224)
T ss_pred --------ccccCCC-------------CCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHH
Confidence 0000000 0111222211111 111122333456788899999964 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+|||+++++..+||+|++|++|+++.
T Consensus 148 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999988764 5799999999999999999999999999863
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=290.58 Aligned_cols=158 Identities=27% Similarity=0.428 Sum_probs=131.6
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~ 575 (723)
|+++|+++.|++. ++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.. +.. .
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~-~~~--------~-- 67 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE-VSF--------A-- 67 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-CCc--------C--
Confidence 4689999999753 58999999999999999999999999999999999999999999887641 100 0
Q ss_pred cccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHH
Q 048654 576 EETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655 (723)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~ 655 (723)
..... .+ ..+++ +.+|||||+|||+|||||+.+|++|||||||++||+.++
T Consensus 68 --~~~~~----------------~~---~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~ 118 (163)
T cd03216 68 --SPRDA----------------RR---AGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEV 118 (163)
T ss_pred --CHHHH----------------Hh---cCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHH
Confidence 00000 00 00111 112999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 656 DALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 656 ~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
+.+.++|+++ +.|||++|||++++..+|| ++++|++|+++
T Consensus 119 ~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d-----~~~~l~~g~i~ 161 (163)
T cd03216 119 ERLFKVIRRLRAQGVAVIFISHRLDEVFEIAD-----RVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEE
Confidence 9999999887 3689999999999999995 99999999986
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=291.11 Aligned_cols=164 Identities=29% Similarity=0.378 Sum_probs=139.5
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~ 575 (723)
|+++|+++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+...++|++|... +.
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~~- 76 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY--LP- 76 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc--cc-
Confidence 4689999999643 3589999999999999999999999999999999999999999999988778999999742 11
Q ss_pred cccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHH
Q 048654 576 EETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655 (723)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~ 655 (723)
..+..+.+ .. + ++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 77 ~~tv~~nl--------------------~~-~--------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~ 127 (166)
T cd03223 77 LGTLREQL--------------------IY-P--------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127 (166)
T ss_pred cccHHHHh--------------------hc-c--------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHH
Confidence 11211111 00 0 2478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 656 DALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 656 ~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
..+.++|.+++.|||+||||.+++ .+|| ++++|+++.
T Consensus 128 ~~l~~~l~~~~~tiiivsh~~~~~-~~~d-----~i~~l~~~~ 164 (166)
T cd03223 128 DRLYQLLKELGITVISVGHRPSLW-KFHD-----RVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHhCCEEEEEeCChhHH-hhCC-----EEEEEcCCC
Confidence 999999999988999999999876 5784 999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=306.19 Aligned_cols=195 Identities=31% Similarity=0.376 Sum_probs=153.6
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcc--cccccc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQ--HFVDLL 573 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q--~~~~~~ 573 (723)
+.++++++.|++. ++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|++++.. +.+..+ .+...+
T Consensus 23 l~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGEF--WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-SSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-chhhcccccCCCCC
Confidence 7789999999863 58999999999999999999999999999999999999999999988753 111111 111223
Q ss_pred CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHH
Q 048654 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653 (723)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~ 653 (723)
++.++.... ...+. .........+..+++.+++.... .+++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 100 tv~enl~~~-~~~~~-~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~ 176 (224)
T cd03220 100 TGRENIYLN-GRLLG-LSRKEIDEKIDEIIEFSELGDFI-DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176 (224)
T ss_pred cHHHHHHHH-HHHcC-CCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 333332111 11111 00001223567788999997544 4678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 654 SIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 654 s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
++..+.++|.++ +.|||+||||++++..+|| ++++|++|+++.
T Consensus 177 ~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d-----~i~~l~~G~i~~ 222 (224)
T cd03220 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD-----RALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEe
Confidence 999999999876 3689999999999999995 999999999964
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=284.90 Aligned_cols=144 Identities=46% Similarity=0.815 Sum_probs=135.3
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~ 575 (723)
|+++|+++.|++. .+|+++||++++||+++|+||||||||||+++|+|+++|++|+|++++...++|++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-------- 70 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-------- 70 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc--------
Confidence 4689999999753 589999999999999999999999999999999999999999999988767777776
Q ss_pred cccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHH
Q 048654 576 EETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655 (723)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~ 655 (723)
||+||+|||+|||||+.+|++|||||||++||+.++
T Consensus 71 --------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 71 --------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred --------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 656 DALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 656 ~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
..+.+.|++++.|||+|||+.+++..+|| ++++|++|+
T Consensus 107 ~~l~~~l~~~~~til~~th~~~~~~~~~d-----~v~~l~~g~ 144 (144)
T cd03221 107 EALEEALKEYPGTVILVSHDRYFLDQVAT-----KIIELEDGK 144 (144)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHHhCC-----EEEEEeCCC
Confidence 99999999998899999999999999995 999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=302.30 Aligned_cols=186 Identities=30% Similarity=0.442 Sum_probs=147.5
Q ss_pred EEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce---------------eE
Q 048654 498 LIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL---------------RI 562 (723)
Q Consensus 498 ~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~---------------~i 562 (723)
++||++.|+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. .+
T Consensus 1 i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGDK--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECCE--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 46899999753 58999999999999999999999999999999999999999999876532 47
Q ss_pred EEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 563 GRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 563 g~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++|... ...++.++.. +..... ........+.+.++++.+|+.... ++++.+|||||+||++|||||+.+|++
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~-~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qr~~laral~~~p~l 155 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLD-LGLKYK-KLSKKEKREKKKEALEKVGLNLKL-KQKIYELSGGEQQRVALARAILKDPPL 155 (206)
T ss_pred eEEecchhhccCCcHHHHHH-HHHHhc-CCCHHHHHHHHHHHHHHcCchhhh-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 88888642 2233333321 111111 110111235678899999997544 467789999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV 694 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl 694 (723)
|||||||+|||+.++..+.++|+++ +.|||+||||++++ .+|| ++++|
T Consensus 156 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d-----~i~~l 206 (206)
T TIGR03608 156 ILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQAD-----RVIEL 206 (206)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcC-----EEEeC
Confidence 9999999999999999999999886 36899999999976 5784 88875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=305.19 Aligned_cols=200 Identities=27% Similarity=0.395 Sum_probs=158.1
Q ss_pred eEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC---CCcceEEECCc--------ee
Q 048654 495 LLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS---PTEGEVRRSQK--------LR 561 (723)
Q Consensus 495 ~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~---p~~G~I~~~~~--------~~ 561 (723)
++.++||++.|++. ...+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 56789999999764 2568999999999999999999999999999999999999 99999998763 35
Q ss_pred EEEEcccc--ccccCccccHHHHHHhhC-CCC-CCCcHHHHHHH-HHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 562 IGRYSQHF--VDLLTMEETPVSYLLRLH-PDQ-EGLSKQEAVRA-KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 562 ig~~~q~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
++|++|.. ...+++.++.. +..... ... ........+.. +|..+++.... .+.+..|||||+|||+|||+|+.
T Consensus 83 i~~~~q~~~~~~~~tv~enl~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLT-YTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-GNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHH-HHHHhhcccccchHHHHHHHHHHHHHhhcchhhh-cccccCcCHHHHHHHHHHHHHHh
Confidence 89999863 22234434322 111111 110 00001123444 78889987543 45679999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCH-HHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDS-RLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~-~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
+|+||||||||+|||+.++..+.++|.++ +.|||++||+. +.+..+|| +|++|++|+++.
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d-----~i~~l~~G~i~~ 224 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFD-----RILLLSSGEIVY 224 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCC-----EEEEEeCCEEEe
Confidence 99999999999999999999999999876 35999999998 68888985 999999999974
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=309.79 Aligned_cols=226 Identities=22% Similarity=0.288 Sum_probs=162.8
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCC---CcEEEEEeeeeecCCChHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVP---KNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~---~~~~i~~~~q~~~~~~~~~ 238 (723)
+...|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+..|.| .+|+|.+.++.+.......
T Consensus 13 ~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 3456999999999998899999999999999999999999999999999999876544 4677777654432100000
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhCCCCc---ccc
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS-DAAEAQASKILAGLGFTK---EMQ 314 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~ 314 (723)
....++..++++.+.... . ...+.+++..... ...... ...++++..+++.+++.. ...
T Consensus 93 ---------~~~~~~~~i~~~~q~~~~------~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~ 155 (265)
T PRK14252 93 ---------DPIEVRMRISMVFQKPNP------F-PKSIFENVAYGLR-IRGVKRRSILEERVENALRNAALWDEVKDRL 155 (265)
T ss_pred ---------CHHHHhccEEEEccCCcC------C-cchHHHHHHhHHH-HcCCChHHHHHHHHHHHHHHcCCchhhhHHH
Confidence 000112223333221110 0 1122222221111 111111 122456778888887631 234
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
++.+.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|++|++
T Consensus 156 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~ 235 (265)
T PRK14252 156 GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM 235 (265)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 6888999999999999999999999999999999999999999999999876 46999999999999999999999999
Q ss_pred CEEEEecCChhhH
Q 048654 393 QKLHFYRGNFDDF 405 (723)
Q Consensus 393 G~i~~~~g~~~~~ 405 (723)
|+++.+ |+.+++
T Consensus 236 G~i~~~-g~~~~~ 247 (265)
T PRK14252 236 GELIEF-GATDTI 247 (265)
T ss_pred CEEEEe-CCHHHH
Confidence 999754 665544
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=318.25 Aligned_cols=211 Identities=25% Similarity=0.332 Sum_probs=164.6
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~------- 559 (723)
...+|+++|++++|.+...++|+||||+|.+|+++||+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346899999999996433468999999999999999999999999999999999986 57999987543
Q ss_pred ------eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCc-HHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHH
Q 048654 560 ------LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLS-KQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARV 628 (723)
Q Consensus 560 ------~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv 628 (723)
..++|++|.+.. ..++.++.. +..... ...... ..+.+..+++.++|... ....++..|||||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~-~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVA-YGPRNN-GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHH-hHHHhc-CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 248999997432 122333321 111111 000000 11235678888887421 12356789999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
+|||||+.+|+||||||||++||+.+...+.+.|+++. .|||+|||+++++.++|| ||++|++|+|++ .|++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~D-----riivl~~G~i~e-~g~~ 308 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISD-----ETVFFYQGWIEE-AGET 308 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCH
Confidence 99999999999999999999999999999999998874 699999999999999995 999999999986 4888
Q ss_pred HHHH
Q 048654 707 EEYK 710 (723)
Q Consensus 707 ~~~~ 710 (723)
+++.
T Consensus 309 ~~l~ 312 (329)
T PRK14257 309 KTIF 312 (329)
T ss_pred HHHh
Confidence 8864
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=296.23 Aligned_cols=165 Identities=26% Similarity=0.418 Sum_probs=135.3
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
.++|+++|+++.| +|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 2 ~~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 2 EPVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred CcEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC
Confidence 4589999999998 699999999999999999999999999999999999999999988763 1
Q ss_pred eEEEEccccc-cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 561 RIGRYSQHFV-DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 561 ~ig~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
.++|++|... ..+....+.. +.+.... .|||||||||+|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~--------------------e~l~~~~-----------~LS~G~~qrl~la~al~~~p~ 124 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVA--------------------ENIALSS-----------LLSGGNQQKVVLARWLARDPR 124 (182)
T ss_pred CeEEecCCcccCcccCCCcHH--------------------HHHHHHh-----------hcCHHHHHHHHHHHHHccCCC
Confidence 3666666521 0010001111 1111000 099999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
||||||||++||+.++..+.++|.++ +.|||++|||++++..+|| ++++|++|++
T Consensus 125 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d-----~v~~l~~G~i 182 (182)
T cd03215 125 VLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCD-----RILVMYEGRI 182 (182)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC-----EEEEecCCcC
Confidence 99999999999999999999999887 3699999999999999995 9999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=304.80 Aligned_cols=197 Identities=26% Similarity=0.417 Sum_probs=154.9
Q ss_pred CCCeEEEEEEEEEcCCCc-ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------
Q 048654 492 TPPLLQLIEVSFSYPNRE-DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~-~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------- 559 (723)
..++|+++|+++.|+++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 357899999999997532 35899999999999999999999999999999999999999999998763
Q ss_pred eeEEEEccccccccCccccHHHHHHhhCCCCCCCcH-H-----HHHHHHHHhC--CCCCCCCcCCCCCCCHHHHHHHHHH
Q 048654 560 LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-Q-----EAVRAKLGKF--GLPSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 ~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~L~~~--gl~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
..++|++|...- + ..++...+...... ..... . ..+..+++.+ |+.... ..++.+|||||||||+||
T Consensus 88 ~~i~~~~q~~~l-~--~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 88 SKVSLVGQEPVL-F--ARSLQDNIAYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEV-GEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred hhEEEEecccHH-H--hhhHHHHhccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchh-hcCCCcCCHHHHHHHHHH
Confidence 248899987421 1 12222222111110 00000 0 1145677888 776544 456799999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
|+|+.+|++|||||||+|||+.++..+.++|+++. .|||+||||++++. .| |+|++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~-----d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RA-----DQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hC-----CEEEEecCCcC
Confidence 99999999999999999999999999999998874 58999999999996 48 49999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=299.12 Aligned_cols=185 Identities=28% Similarity=0.393 Sum_probs=150.5
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce----------eEEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL----------RIGRY 565 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~----------~ig~~ 565 (723)
|+++||++.|++. .+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEe
Confidence 4689999999753 58999999999999999999999999999999999999999999876532 47888
Q ss_pred ccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEecc
Q 048654 566 SQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645 (723)
Q Consensus 566 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDE 645 (723)
+|... +....+....+...... ...+.+.++++.+++.... ++++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~q~~~--~~~~~tv~e~l~~~~~~----~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDE 151 (201)
T cd03231 79 GHAPG--IKTTLSVLENLRFWHAD----HSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRVALARLLLSGRPLWILDE 151 (201)
T ss_pred ccccc--cCCCcCHHHHHHhhccc----ccHHHHHHHHHHcCChhhh-cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 87632 11112222222111111 1345678899999997544 46789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE
Q 048654 646 PTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV 694 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl 694 (723)
||+|||+.+++.+.++|.++ +.|||+||||...+..+| ++++++
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~-----~~~~~~ 198 (201)
T cd03231 152 PTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAG-----ARELDL 198 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhcc-----ceeEec
Confidence 99999999999999999876 468999999999998888 488876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=301.30 Aligned_cols=207 Identities=24% Similarity=0.327 Sum_probs=151.7
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
+.+ ||+++|+++.+ |+||+|++ ++++|+||||||||||+++|+|+..| ..|+|.+.+.++.......
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~------- 68 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKI------- 68 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchh-------
Confidence 345 89999999876 99999999 99999999999999999999998754 4566766665442111000
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
....++..++++.+.... .....+.+++.... ..........++.++++.+|+.. ..++++.+|||||
T Consensus 69 --~~~~~~~~i~~~~q~~~~------~~~~t~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 136 (214)
T cd03297 69 --NLPPQQRKIGLVFQQYAL------FPHLNVRENLAFGL---KRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGE 136 (214)
T ss_pred --hhhhHhhcEEEEecCCcc------CCCCCHHHHHHHHH---hhCCHHHHHHHHHHHHHHcCCHh-HhhcCcccCCHHH
Confidence 000112223333221111 01112222222111 11112234567889999999974 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
|||++|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 137 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 137 KQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999998764 5799999999999999999999999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=311.77 Aligned_cols=199 Identities=25% Similarity=0.368 Sum_probs=160.5
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++|+++.|++....+|+||||+|.+||+++|+|+||||||||+++|+|+++ ++|+|++++. ..++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 78999999996433468999999999999999999999999999999999998 7899998773 25899
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCC-----------CCHHHHHHHHHHHH
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAK-----------LSGGQKARVVFTSI 633 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~-----------LSGGqkqRv~lAra 633 (723)
++|.+.- + ..+....+ ..+.. ...+.+.++++.+||..... +.+.. |||||||||+||||
T Consensus 82 v~q~~~l-f--~~tv~~nl-~~~~~----~~~~~~~~~l~~~gL~~~~~-~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 82 IPQKVFI-F--SGTFRKNL-DPYGK----WSDEEIWKVAEEVGLKSVIE-QFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152 (275)
T ss_pred ECCCccc-c--hhhHHHHh-hhccC----CCHHHHHHHHHHcCCHHHHH-hCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 9997531 1 12322222 11111 12356778888899865433 33344 99999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|+||||||||++||+.+...+.+.|.+.. .|||+||||++++.. | |||++|++|+|+.+ |+++++..
T Consensus 153 ll~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~-----dri~vl~~G~i~~~-g~~~~l~~ 225 (275)
T cd03289 153 VLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-C-----QRFLVIEENKVRQY-DSIQKLLN 225 (275)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-C-----CEEEEecCCeEeec-CCHHHHhh
Confidence 999999999999999999999999999998753 699999999999874 7 49999999999864 88887654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=308.49 Aligned_cols=210 Identities=23% Similarity=0.294 Sum_probs=162.2
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~------- 559 (723)
..++|+++|+++.|++. .+|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 13 ~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 35689999999999753 589999999999999999999999999999999999975 7999987541
Q ss_pred --------eeEEEEccccccc-cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC---CCCcCCCCCCCHHHHHH
Q 048654 560 --------LRIGRYSQHFVDL-LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS---HNHLTPIAKLSGGQKAR 627 (723)
Q Consensus 560 --------~~ig~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~i~~LSGGqkqR 627 (723)
..++|++|..... .++.++... ..............+.+..+++.+++.. ....+++.+|||||+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAY-GLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHh-HHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 2478998864211 122222211 1111110000011245667788887742 12235678999999999
Q ss_pred HHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCC
Q 048654 628 VVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705 (723)
Q Consensus 628 v~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~ 705 (723)
|+|||||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| ++++|++|+++. .|+
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d-----~i~~l~~G~i~~-~g~ 243 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSD-----YTAYMYMGELIE-FGA 243 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-eCC
Confidence 999999999999999999999999999999999998875 589999999999999995 999999999985 477
Q ss_pred HHHHH
Q 048654 706 FEEYK 710 (723)
Q Consensus 706 ~~~~~ 710 (723)
.+++.
T Consensus 244 ~~~~~ 248 (265)
T PRK14252 244 TDTIF 248 (265)
T ss_pred HHHHH
Confidence 76654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=303.64 Aligned_cols=213 Identities=25% Similarity=0.356 Sum_probs=159.7
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|+++.|++. +|+|+||+|.+|++++|+|+||||||||+++|+|+..| ..|+|.+.+..+......
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~-------- 69 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPE-------- 69 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChh--------
Confidence 5689999999875 89999999999999999999999999999999998654 456777766654321100
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
+..++++.+.... .....+.+++...+. ...........++.++++.+|+.. ..++.+.+|||||
T Consensus 70 -------~~~i~~~~q~~~~------~~~~t~~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 134 (235)
T cd03299 70 -------KRDISYVPQNYAL------FPHMTVYKNIAYGLK-KRKVDKKEIERKVLEIAEMLGIDH-LLNRKPETLSGGE 134 (235)
T ss_pred -------HcCEEEEeecCcc------CCCccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChh-HHhcCcccCCHHH
Confidence 1112222211100 111122333321111 111122344567888999999964 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
+|||+|||||+.+|++|||||||++||+.++.++.+.|+++ +.|||++||+++++..+||+|++|++|+++. .|+
T Consensus 135 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~~~ 213 (235)
T cd03299 135 QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ-VGK 213 (235)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecC
Confidence 99999999999999999999999999999999999998764 5799999999999999999999999999974 466
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
++.+
T Consensus 214 ~~~~ 217 (235)
T cd03299 214 PEEV 217 (235)
T ss_pred HHHH
Confidence 6544
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=311.74 Aligned_cols=218 Identities=17% Similarity=0.226 Sum_probs=161.5
Q ss_pred ceEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARG---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|+++||+++|++ .++|+|+||+|.+|++++|+|+||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~--- 78 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAENVWN--- 78 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEECCcCCHHH---
Confidence 5899999999974 3599999999999999999999999999999999998764 4566777666543221111
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
++..++++.+.... ......+.+++...... .........+++..+++.+|+.. ..++++.+|
T Consensus 79 ----------~~~~i~~v~q~~~~-----~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 141 (277)
T PRK13642 79 ----------LRRKIGMVFQNPDN-----QFVGATVEDDVAFGMEN-QGIPREEMIKRVDEALLAVNMLD-FKTREPARL 141 (277)
T ss_pred ----------HhcceEEEEECHHH-----hhccCCHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccC
Confidence 11222322221100 00011222333211111 11222334567889999999964 557899999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||+|||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++. .||+|++|++|+++.
T Consensus 142 S~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~ 220 (277)
T PRK13642 142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIK 220 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998754 679999999999997 599999999999974
Q ss_pred ecCChhhHH
Q 048654 398 YRGNFDDFE 406 (723)
Q Consensus 398 ~~g~~~~~~ 406 (723)
.|+.+++.
T Consensus 221 -~g~~~~~~ 228 (277)
T PRK13642 221 -EAAPSELF 228 (277)
T ss_pred -eCCHHHHh
Confidence 47766653
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=314.45 Aligned_cols=211 Identities=25% Similarity=0.330 Sum_probs=164.3
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc-------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~------- 559 (723)
.+++|.++||++.|+++ .+|+++||+|.+|++++|+|+|||||||||++|+|+++ |++|+|.+++.
T Consensus 42 ~~~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CCceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 46689999999999753 58999999999999999999999999999999999986 68999987652
Q ss_pred ------eeEEEEcccccc-ccCccccHHHHHHhhCCC--------CCCC----cHHHHHHHHHHhCCCCC---CCCcCCC
Q 048654 560 ------LRIGRYSQHFVD-LLTMEETPVSYLLRLHPD--------QEGL----SKQEAVRAKLGKFGLPS---HNHLTPI 617 (723)
Q Consensus 560 ------~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~--------~~~~----~~~~~~~~~L~~~gl~~---~~~~~~i 617 (723)
..++|++|...- ..++.++..... ..... ..+. ...+.+..+++.+++.. ....+++
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 198 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA 198 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHH-hhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc
Confidence 248899987421 112222221110 00000 0001 11345778888898842 1224567
Q ss_pred CCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEE-EEE
Q 048654 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEI-WVV 694 (723)
Q Consensus 618 ~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv-~vl 694 (723)
.+|||||||||+|||||+.+|+||||||||+|||+.++..|.++|+++. .|||+||||++++..+|| ++ ++|
T Consensus 199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d-----~i~~~l 273 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISD-----QTAVFL 273 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC-----EEEEEe
Confidence 8999999999999999999999999999999999999999999999874 589999999999999995 76 678
Q ss_pred ECCeEEecCCCHHHHHH
Q 048654 695 ENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 695 ~~G~i~~~~g~~~~~~~ 711 (723)
++|+++. .|+++++..
T Consensus 274 ~~G~i~~-~g~~~~~~~ 289 (305)
T PRK14264 274 TGGELVE-YDDTDKIFE 289 (305)
T ss_pred cCCEEEE-eCCHHHHHh
Confidence 9999985 578877643
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=300.22 Aligned_cols=209 Identities=29% Similarity=0.419 Sum_probs=153.8
Q ss_pred eEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 166 ITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 166 I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
|+++|+++.|++ +++|+|+||+|.+|++++|+|+||||||||+++|+|++.| ..|+|.+.+..+.......
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~--- 76 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELYGASEKE--- 76 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhHhcCHhH---
Confidence 789999999975 6899999999999999999999999999999999998654 5667777665543211110
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHH-hcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQ-ILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
....+..++++.+.... .....+.+++... .... .........++.++++.+|+.. ..++.+.+
T Consensus 77 -------~~~~~~~i~~~~q~~~~------~~~~t~~~n~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 141 (220)
T TIGR02982 77 -------LVQLRRNIGYIFQAHNL------LGFLTARQNVQMA-LELQPNLSYQEARERARAMLEAVGLGD-HLDYYPHN 141 (220)
T ss_pred -------HHHHHhheEEEcCChhh------cCCCCHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHcCChh-hhhcChhh
Confidence 00112223322221100 0011222222211 1111 1223344567899999999964 45788999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
||||||||++|||||+.+|++|||||||++||+.++..|.++|+++ +.|||+||||++.. ++||+|++|++|++
T Consensus 142 lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999888754 57999999999965 79999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=291.04 Aligned_cols=219 Identities=25% Similarity=0.330 Sum_probs=168.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++.+|+++|++|++|.+++|||||||||||||.+++++... .+|.|.+.+.++...+...+.
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~~~~s~~LA---- 74 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELTSTPSKELA---- 74 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecccCChHHHH----
Confidence 48899999999999999999999999999999999999999999999988654 456777778887765544332
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHH-HHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY-EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
+.++.+.+..... ....+.+-+.+.. .+-......+.+..+.++++.|+|. .+.+|+..+|||
T Consensus 75 ---------k~lSILkQ~N~i~------~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSG 138 (252)
T COG4604 75 ---------KKLSILKQENHIN------SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSG 138 (252)
T ss_pred ---------HHHHHHHhhchhh------heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhccc
Confidence 2222221110000 0001111111100 0001112346677899999999997 567899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
|||||..||..|+++.+.++||||.|+||......++..|++ +++|||+|-||++|+.-++|+|+-|++|+++ ..
T Consensus 139 GQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~ 217 (252)
T COG4604 139 GQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQ 217 (252)
T ss_pred chhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ec
Confidence 999999999999999999999999999999988877777764 5899999999999999999999999999996 57
Q ss_pred CChhhHH
Q 048654 400 GNFDDFE 406 (723)
Q Consensus 400 g~~~~~~ 406 (723)
|++++..
T Consensus 218 G~~~eii 224 (252)
T COG4604 218 GSPDEII 224 (252)
T ss_pred CCHHHhc
Confidence 8887764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=306.94 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=149.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||++.|+++++|+++||+|++|++++|+|||||||||||++|+|+..|. .|+|.+.+...
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~~~~~------------- 68 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD--EGVIKRNGKLR------------- 68 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCccC-------------
Confidence 689999999999889999999999999999999999999999999999987654 45554432100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
++++.+.... .......+.+. +. ........++.++++.+|+.+ ..++++.+||||
T Consensus 69 -----------i~~v~q~~~~----~~~l~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG 124 (251)
T PRK09544 69 -----------IGYVPQKLYL----DTTLPLTVNRF-------LR-LRPGTKKEDILPALKRVQAGH-LIDAPMQKLSGG 124 (251)
T ss_pred -----------EEEecccccc----ccccChhHHHH-------Hh-ccccccHHHHHHHHHHcCChH-HHhCChhhCCHH
Confidence 0000000000 00000000010 00 000111345778899999974 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++ +++ ..|
T Consensus 125 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g 202 (251)
T PRK09544 125 ETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSG 202 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeC
Confidence 999999999999999999999999999999999999988654 67999999999999999999999975 665 457
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+++
T Consensus 203 ~~~~~ 207 (251)
T PRK09544 203 TPEVV 207 (251)
T ss_pred CHHHH
Confidence 76554
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=301.18 Aligned_cols=202 Identities=29% Similarity=0.456 Sum_probs=161.6
Q ss_pred CCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------
Q 048654 491 LTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------- 559 (723)
Q Consensus 491 ~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------- 559 (723)
..+++|+++||++.|+++ .+|+||||+|++||.++|+|||||||||||++|+|.++|++|.+.+.++
T Consensus 27 ~~~~li~l~~v~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 27 INEPLIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CCcceEEecceEEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 356899999999999874 5899999999999999999999999999999999999999999876543
Q ss_pred -eeEEEEccccccccCccccHHHHHHhh-------CCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHH
Q 048654 560 -LRIGRYSQHFVDLLTMEETPVSYLLRL-------HPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 560 -~~ig~~~q~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
.+||+++......+...++....++.. +..........++..+|+.||+.+ ..++++.+||-||||||.||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~~~~LS~Ge~rrvLia 183 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRPFGSLSQGEQRRVLIA 183 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCchhhcCHhHHHHHHHH
Confidence 357777643322222222211111111 110111113456788999999986 55689999999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC-----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT-----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
|||+.+|.+|||||||+|||...++.+.+.|.++. .++|+|||..+.+..+. ++++.+.+|+++
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~-----th~lll~~g~v~ 252 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCF-----THRLLLKEGEVV 252 (257)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccccc-----ceEEEeeCCcee
Confidence 99999999999999999999999999999999875 36999999999998776 589999999996
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=304.13 Aligned_cols=200 Identities=32% Similarity=0.438 Sum_probs=153.7
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++|+++.|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999642 35899999999999999999999999999999999999999999998763 23889
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHH---------HhC--CCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKL---------GKF--GLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---------~~~--gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
++|... .+ ..+....+...... ... ..+...+ ..+ ++.... .+++..|||||||||+||||
T Consensus 80 ~~q~~~-~~--~~tv~~nl~~~~~~---~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~LS~G~~~rl~la~a 151 (236)
T cd03253 80 VPQDTV-LF--NDTIGYNIRYGRPD---ATD-EEVIEAAKAAQIHDKIMRFPDGYDTIV-GERGLKLSGGEKQRVAIARA 151 (236)
T ss_pred ECCCCh-hh--cchHHHHHhhcCCC---CCH-HHHHHHHHHcCcHHHHHhccccccchh-hcCCCcCCHHHHHHHHHHHH
Confidence 998742 11 12333322111111 111 1222222 333 333222 34568999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|++|||||||+|||+.++..+.++|.++. .|||+|||+.+++.. | |++++|++|+++ ..|+.+++.+
T Consensus 152 L~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~-----d~~~~l~~g~i~-~~~~~~~~~~ 224 (236)
T cd03253 152 ILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-A-----DKIIVLKDGRIV-ERGTHEELLA 224 (236)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-C-----CEEEEEECCEEE-eeCCHHHHhh
Confidence 999999999999999999999999999998774 589999999999964 7 499999999997 4577777654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=308.24 Aligned_cols=192 Identities=26% Similarity=0.337 Sum_probs=150.1
Q ss_pred ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccc--ccccCccccHHHHHHhhC
Q 048654 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHF--VDLLTMEETPVSYLLRLH 587 (723)
Q Consensus 510 ~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~--~~~~~~~~~~~~~~~~~~ 587 (723)
.++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. +++++|.. ...+++.++... .....
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~~~~~~~tv~enl~~-~~~~~ 113 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISAGLSGQLTGIENIEF-KMLCM 113 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEecccCCCCCCcHHHHHHH-HHHHc
Confidence 35899999999999999999999999999999999999999999998875 45555542 122233332211 11111
Q ss_pred CCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--
Q 048654 588 PDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF-- 665 (723)
Q Consensus 588 ~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~-- 665 (723)
..........+..++..+++.... .+++.+|||||+|||+||+||+.+|+||||||||+|||+.+...+.+.|.++
T Consensus 114 -~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~ 191 (264)
T PRK13546 114 -GFKRKEIKAMTPKIIEFSELGEFI-YQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE 191 (264)
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhh-cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 110001123345678888887544 4678999999999999999999999999999999999999999999999876
Q ss_pred -CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 666 -TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 666 -~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
+.|||+||||++++..+|| +|++|++|+|+. .|+++++...
T Consensus 192 ~g~tiIiisH~~~~i~~~~d-----~i~~l~~G~i~~-~g~~~~~~~~ 233 (264)
T PRK13546 192 QNKTIFFVSHNLGQVRQFCT-----KIAWIEGGKLKD-YGELDDVLPK 233 (264)
T ss_pred CCCEEEEEcCCHHHHHHHcC-----EEEEEECCEEEE-eCCHHHHHHH
Confidence 4699999999999999995 999999999975 5787776543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=321.85 Aligned_cols=212 Identities=23% Similarity=0.334 Sum_probs=156.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|++ ||+++|+++.+ |+||+|++|++++|+|||||||||||++|+|+..| ..|.|.+.+..+.......
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~------ 69 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGI------ 69 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccccccc------
Confidence 3777 99999987653 89999999999999999999999999999998654 5667777665543210000
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.....+..++++.+.... .....+.+++.... ......++.++++.+|+.+ ..++++.+||||
T Consensus 70 ---~~~~~~~~i~~v~q~~~l------~~~~tv~enl~~~~-------~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG 132 (352)
T PRK11144 70 ---CLPPEKRRIGYVFQDARL------FPHYKVRGNLRYGM-------AKSMVAQFDKIVALLGIEP-LLDRYPGSLSGG 132 (352)
T ss_pred ---ccchhhCCEEEEcCCccc------CCCCcHHHHHHhhh-------hhhhHHHHHHHHHHcCCch-hhhCCcccCCHH
Confidence 000011122222221100 11112223322111 1123457889999999974 457999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.+ |
T Consensus 133 q~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~-g 211 (352)
T PRK11144 133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF-G 211 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe-c
Confidence 999999999999999999999999999999999999988754 57999999999999999999999999999754 6
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+++
T Consensus 212 ~~~~i 216 (352)
T PRK11144 212 PLEEV 216 (352)
T ss_pred CHHHH
Confidence 66554
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=303.28 Aligned_cols=182 Identities=25% Similarity=0.364 Sum_probs=155.3
Q ss_pred cceEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCC
Q 048654 164 KDITIDNFSVAARG---------KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234 (723)
Q Consensus 164 ~~I~l~nls~~y~~---------~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~ 234 (723)
.+++++|+++.|.- ..+++||||+|.+||++||||.||||||||-|+|.|+..| ..|+|.|.++++...
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~i~~~ 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKDITKL 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcchhhc
Confidence 46899999999942 3799999999999999999999999999999999998754 566777765543211
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc
Q 048654 235 DRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
. .....+++.++|+.+|+.....
T Consensus 81 ~---------------------------------------------------------~~~~~~~v~elL~~Vgl~~~~~ 103 (268)
T COG4608 81 S---------------------------------------------------------KEERRERVLELLEKVGLPEEFL 103 (268)
T ss_pred c---------------------------------------------------------hhHHHHHHHHHHHHhCCCHHHh
Confidence 0 1223456888999999988778
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
+|++++|||||+|||+|||||+.+|+++++|||+++||...+..+.++|.++ +.|.|+||||+..+..+||||++|
T Consensus 104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VM 183 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVM 183 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEE
Confidence 9999999999999999999999999999999999999999888888887654 679999999999999999999999
Q ss_pred eCCEEEEecCChhhH
Q 048654 391 HDQKLHFYRGNFDDF 405 (723)
Q Consensus 391 ~~G~i~~~~g~~~~~ 405 (723)
..|+|+.. |+.+++
T Consensus 184 y~G~iVE~-g~~~~~ 197 (268)
T COG4608 184 YLGKIVEI-GPTEEV 197 (268)
T ss_pred ecCceeEe-cCHHHH
Confidence 99999865 665554
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=294.60 Aligned_cols=212 Identities=29% Similarity=0.403 Sum_probs=170.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEE----------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR---------- 564 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~---------- 564 (723)
|++++||+++|++ ..+|+++|++|++|.+++|||||||||||||.+++.++++++|+|++++..-..+
T Consensus 1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 6889999999986 4589999999999999999999999999999999999999999999887532222
Q ss_pred -Eccc--cccccCccccHHHHHHhhCCCCCCC---cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 565 -YSQH--FVDLLTMEETPVSYLLRLHPDQEGL---SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 565 -~~q~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
+.|. +...+++.+. + .+..||...|. .++..+.++++.|+|.... ++...+||||||||+.||..++++.
T Consensus 79 ILkQ~N~i~~rlTV~dL-v--~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~-dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 79 ILKQENHINSRLTVRDL-V--GFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS-DRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HHHhhchhhheeEHHHH-h--hcCCCcccCCCCchHHHHHHHHHHHHhcccchH-HHhHHhcccchhhhhhhheeeeccC
Confidence 2231 1122222221 1 12334443332 2456688999999998644 5778999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHH----cCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH-HHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDE----FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK-EDL 713 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~----~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~-~~~ 713 (723)
+.++||||.|+||+.....+++.|+. +++|||+|-||.+|+..++| +|+.|++|+++ ..|+++++. .+.
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD-----~IVAlK~G~vv-~~G~~~eii~~~~ 228 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSD-----HIVALKNGKVV-KQGSPDEIIQPEI 228 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhh-----heeeecCCEEE-ecCCHHHhcCHHH
Confidence 99999999999999998888888865 46899999999999999885 89999999997 468988764 466
Q ss_pred HHHHH
Q 048654 714 QREIK 718 (723)
Q Consensus 714 ~~~~~ 718 (723)
++++.
T Consensus 229 L~eiy 233 (252)
T COG4604 229 LSEIY 233 (252)
T ss_pred HHHHh
Confidence 77764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=301.55 Aligned_cols=205 Identities=27% Similarity=0.399 Sum_probs=155.0
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|++++|+++++|+|+||+|.+|++++|+|||||||||||++|+|+..| ..|.|.+.+..+.....
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~~~~--------- 69 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTRKDL--------- 69 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccc---------
Confidence 5789999999999999999999999999999999999999999999998654 45666665543321100
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
..++++.+.... .....+.+++.... .+. +. ...++.++++.+|+.. ..++++.+|||||
T Consensus 70 --------~~~~~~~q~~~~------~~~~t~~~~~~~~~-~~~--~~--~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 129 (223)
T TIGR03740 70 --------HKIGSLIESPPL------YENLTARENLKVHT-TLL--GL--PDSRIDEVLNIVDLTN-TGKKKAKQFSLGM 129 (223)
T ss_pred --------ccEEEEcCCCCc------cccCCHHHHHHHHH-HHc--CC--CHHHHHHHHHHcCCcH-HHhhhHhhCCHHH
Confidence 011111111000 00112222222111 111 11 1346788999999974 4578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCCh
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNF 402 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~ 402 (723)
+||++|||||+.+|+||||||||++||+.++..+.++|+++ +.|||++|||++++..+||+|++|++|+++. .|+.
T Consensus 130 ~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~ 208 (223)
T TIGR03740 130 KQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY-QGKI 208 (223)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE-ecCh
Confidence 99999999999999999999999999999999999999765 5699999999999999999999999999974 4554
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=303.32 Aligned_cols=214 Identities=26% Similarity=0.354 Sum_probs=159.0
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+..| ..|+|.+.+..+..... .
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~~~~--~------ 70 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATRVHA--R------ 70 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCCh--h------
Confidence 5789999999999999999999999999999999999999999999998654 45666665554422111 0
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
+..++++++.... .....+.+++.... .............+.++++.+++. ...++.+..|||||
T Consensus 71 -------~~~i~~~~q~~~~------~~~~t~~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~ 135 (237)
T TIGR00968 71 -------DRKIGFVFQHYAL------FKHLTVRDNIAFGL-EIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQ 135 (237)
T ss_pred -------hcCEEEEecChhh------ccCCcHHHHHHhHH-HhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHH
Confidence 0111111111000 00111222221111 111111223346778999999996 44578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
+||++|||||+.+|+||||||||++||+.++.++.++|.+. +.|||++||+++++..+||+|++|++|+++. .|+
T Consensus 136 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~-~~~ 214 (237)
T TIGR00968 136 RQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ-IGS 214 (237)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE-ecC
Confidence 99999999999999999999999999999999999999764 5799999999999999999999999999974 466
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+.+
T Consensus 215 ~~~~ 218 (237)
T TIGR00968 215 PDEV 218 (237)
T ss_pred HHHH
Confidence 5554
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=305.84 Aligned_cols=201 Identities=24% Similarity=0.321 Sum_probs=148.5
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHH
Q 048654 173 VAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKL 252 (723)
Q Consensus 173 ~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l 252 (723)
+.|+.+++|+|+||+|++|++++|+|+|||||||||++|+|+..| ..|+|.+.+..+.... . .+
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~-~-------------~~ 92 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRR-K-------------KF 92 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccc-h-------------hh
Confidence 557778899999999999999999999999999999999998755 4566666554321110 0 01
Q ss_pred HHHHHhhh-cCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHH
Q 048654 253 REEVASLQ-NSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331 (723)
Q Consensus 253 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaL 331 (723)
+..++++. +.... .....+.+.+... ..+..........++..+++.+|+.+ ..++++.+||||||||++|
T Consensus 93 ~~~i~~~~~~~~~~------~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~l 164 (236)
T cd03267 93 LRRIGVVFGQKTQL------WWDLPVIDSFYLL-AAIYDLPPARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEI 164 (236)
T ss_pred cccEEEEcCCcccc------CCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHH
Confidence 11222221 11000 0011222222111 11112223344567788999999974 4578899999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 332 ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 332 ArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+|||+++++..+||+|++|++|+++.
T Consensus 165 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 165 AAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999865 4799999999999999999999999999863
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=297.75 Aligned_cols=203 Identities=26% Similarity=0.355 Sum_probs=147.4
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhH
Q 048654 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHE 247 (723)
Q Consensus 168 l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 247 (723)
++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~--------- 69 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKK--------- 69 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhh---------
Confidence 47899999989999999999999999999999999999999999998654 5567777665532111100
Q ss_pred HHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHH
Q 048654 248 ELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRM 327 (723)
Q Consensus 248 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQ 327 (723)
.....+..++++.+.... .....+.+++.... ............++.++++.+|+.. ..++++.+|||||||
T Consensus 70 ~~~~~~~~i~~~~q~~~~------~~~~t~~e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~q 141 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFAL------IENETVEENLDLGL-KYKKLSKKEKREKKKEALEKVGLNL-KLKQKIYELSGGEQQ 141 (206)
T ss_pred HHHHHHhCeeEEecchhh------ccCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCchh-hhcCChhhCCHHHHH
Confidence 000111222222211100 00112222222111 1111222344567889999999964 457899999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 328 RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 328 RvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
|++|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+|||+++++ .+||+|++|
T Consensus 142 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 142 RVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999999999999999999999999999865 57999999999977 579999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=291.96 Aligned_cols=164 Identities=34% Similarity=0.530 Sum_probs=137.5
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIGRY 565 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig~~ 565 (723)
|+++|+++.|++....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4689999999754235899999999999999999999999999999999999999999998774 135666
Q ss_pred ccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEecc
Q 048654 566 SQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645 (723)
Q Consensus 566 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDE 645 (723)
+|+.. +. ..+ +.+.+ +..|||||+|||+||||++.+|++|||||
T Consensus 81 ~q~~~--~~-~~t--------------------v~~~i-------------~~~LS~G~~qrv~laral~~~p~~lllDE 124 (178)
T cd03247 81 NQRPY--LF-DTT--------------------LRNNL-------------GRRFSGGERQRLALARILLQDAPIVLLDE 124 (178)
T ss_pred ccCCe--ee-ccc--------------------HHHhh-------------cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 66421 00 001 11111 47899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 646 PTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
||++||+.+++.+.++|.++ +.|||++|||.+++. .| |++++|++|+++.
T Consensus 125 P~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~-----d~~~~l~~g~i~~ 176 (178)
T cd03247 125 PTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HM-----DKILFLENGKIIM 176 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hC-----CEEEEEECCEEEe
Confidence 99999999999999999887 368999999999986 67 4999999999964
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=316.02 Aligned_cols=223 Identities=21% Similarity=0.276 Sum_probs=164.0
Q ss_pred cceEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeeecCCChHH
Q 048654 164 KDITIDNFSVAAR--GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 164 ~~I~l~nls~~y~--~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~~~~~~~~ 238 (723)
..|+++|++++|. ..++|+|+||+|++|+++||+|+|||||||||++|+|+..+ .|..|.|.+.++++......
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~- 157 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS- 157 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc-
Confidence 4699999999995 45799999999999999999999999999999999998653 24578888877765321100
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCc---ccc
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTK---EMQ 314 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~ 314 (723)
...++..++++++.... ....+.+++.... ...... .....+.+..+++.+++.. ...
T Consensus 158 ----------~~~lr~~i~~v~q~~~~-------~~~ti~eNi~~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~ 219 (329)
T PRK14257 158 ----------SLELRTRIGMVFQKPTP-------FEMSIFDNVAYGP-RNNGINDRKILEKIVEKSLKSAALWDEVKDDL 219 (329)
T ss_pred ----------hHhhhccEEEEecCCcc-------CCCcHHHHHHhHH-HhcCCChHHHHHHHHHHHHHHcCCcchhhhhh
Confidence 01223334444322111 0112223332111 111111 1112344677888888632 234
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
++++..|||||||||+|||||+.+|+||||||||++||+.+..++.+.|+++ +.|||+|||+++++..+||+|++|++
T Consensus 220 ~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~ 299 (329)
T PRK14257 220 DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQ 299 (329)
T ss_pred hCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6889999999999999999999999999999999999999999999999865 47999999999999999999999999
Q ss_pred CEEEEecCChhhHH
Q 048654 393 QKLHFYRGNFDDFE 406 (723)
Q Consensus 393 G~i~~~~g~~~~~~ 406 (723)
|+++.+ |++.++.
T Consensus 300 G~i~e~-g~~~~l~ 312 (329)
T PRK14257 300 GWIEEA-GETKTIF 312 (329)
T ss_pred CEEEEe-CCHHHHh
Confidence 999754 7776653
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=291.12 Aligned_cols=159 Identities=36% Similarity=0.616 Sum_probs=132.1
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~ig~ 564 (723)
|+++|+++.|++....+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 46899999997533458999999999999999999999999999999999999999999987631 3455
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
++|... .+ ..+ +.+.+ |||||+|||+|||||+.+|++||||
T Consensus 81 ~~q~~~-~~--~~t--------------------v~~~l----------------LS~G~~qrv~la~al~~~p~~lllD 121 (173)
T cd03246 81 LPQDDE-LF--SGS--------------------IAENI----------------LSGGQRQRLGLARALYGNPRILVLD 121 (173)
T ss_pred ECCCCc-cc--cCc--------------------HHHHC----------------cCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 555321 00 001 11111 9999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 645 EPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
|||++||+.++..+.++|+++. .|||+||||++++. +|| ++++|++|++
T Consensus 122 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d-----~v~~l~~G~i 173 (173)
T cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SAD-----RILVLEDGRV 173 (173)
T ss_pred CCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC-----EEEEEECCCC
Confidence 9999999999999999998763 58999999999884 784 9999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=297.68 Aligned_cols=199 Identities=23% Similarity=0.348 Sum_probs=150.5
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+..| ..|+|.+.+..+.....
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~-------- 70 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRD-------- 70 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchH--------
Confidence 47899999999999999999999999999999999999999999999998765 45667666554422110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.++..+.++.+.... .....+.+++.... .. .+ .....++.++++.+|+.. ..++++.+||||
T Consensus 71 ------~~~~~~~~~~~~~~~------~~~~tv~e~l~~~~-~~--~~-~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G 133 (204)
T PRK13538 71 ------EYHQDLLYLGHQPGI------KTELTALENLRFYQ-RL--HG-PGDDEALWEALAQVGLAG-FEDVPVRQLSAG 133 (204)
T ss_pred ------HhhhheEEeCCcccc------CcCCcHHHHHHHHH-Hh--cC-ccHHHHHHHHHHHcCCHH-HhhCChhhcCHH
Confidence 011222222211100 01112223322211 11 11 123467889999999964 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
||||++|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+.+|++++
T Consensus 134 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 134 QQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999999999999999999875 579999999999999988888887
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=294.80 Aligned_cols=187 Identities=24% Similarity=0.333 Sum_probs=150.7
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
..|+++|+++.|++....+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 468999999999753235899999999999999999999999999999999999999999998763 258
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
+|++|... .+ ..+....+ ..+.. . ....+...++ + ..++..|||||+|||+|||+|+.+|+|||
T Consensus 85 ~~v~q~~~-~~--~~tv~~~l-~~~~~---~-~~~~~~~~l~---~-----~~~~~~LS~G~~qrv~laral~~~p~lll 148 (207)
T cd03369 85 TIIPQDPT-LF--SGTIRSNL-DPFDE---Y-SDEEIYGALR---V-----SEGGLNLSQGQRQLLCLARALLKRPRVLV 148 (207)
T ss_pred EEEecCCc-cc--CccHHHHh-cccCC---C-CHHHHHHHhh---c-----cCCCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99999742 11 12333322 22211 1 1233444444 2 24568999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEec
Q 048654 643 LDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~ 702 (723)
|||||++||+.++..+.++|+++. .|||+||||.+++.. | |++++|++|++..+
T Consensus 149 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~-----d~v~~l~~g~i~~~ 204 (207)
T cd03369 149 LDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-Y-----DKILVMDAGEVKEY 204 (207)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C-----CEEEEEECCEEEec
Confidence 999999999999999999999873 589999999999975 7 49999999999753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=345.59 Aligned_cols=204 Identities=29% Similarity=0.395 Sum_probs=162.4
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
.-++++||+|+|+....++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|++++. ..+
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 458999999999876567999999999999999999999999999999999999999999998873 369
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCC-----------CCCCCcCCCCCCCHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-----------PSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl-----------~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
||++|+..- ...+..+.+....+.. ..+++.+++...|. ...... .-..||||||||++||
T Consensus 550 g~V~Q~~~L---f~gSI~eNi~l~~p~~----~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E-~G~~LSGGQrQrlalA 621 (709)
T COG2274 550 GYVLQDPFL---FSGSIRENIALGNPEA----TDEEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLSGGQRQRLALA 621 (709)
T ss_pred eEEcccchh---hcCcHHHHHhcCCCCC----CHHHHHHHHHHhCcHHHHHhccccccccccc-CCCCCCHHHHHHHHHH
Confidence 999997421 1122222222222221 22334444433333 211111 2357999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+++|+||||||||++||+.+...+.+.|.++. .|+|+|||.+..+. .| |||+||++|+|+. .|+.+++
T Consensus 622 RaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~a-----drIiVl~~Gkiv~-~gs~~el 694 (709)
T COG2274 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SA-----DRIIVLDQGKIVE-QGSHEEL 694 (709)
T ss_pred HHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hc-----cEEEEccCCceec-cCCHHHH
Confidence 99999999999999999999999999999999986 79999999999996 45 5999999999985 6999988
Q ss_pred HHH
Q 048654 710 KED 712 (723)
Q Consensus 710 ~~~ 712 (723)
.+.
T Consensus 695 l~~ 697 (709)
T COG2274 695 LAQ 697 (709)
T ss_pred HHh
Confidence 765
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=298.44 Aligned_cols=206 Identities=21% Similarity=0.289 Sum_probs=152.8
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
++++|+++.|+. ++.|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+.++.... .
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~--~------- 67 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLA--P------- 67 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCC--h-------
Confidence 468999999974 57899999999999999999999999999999998654 4567776665543211 0
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.+..++++.+.... .....+.+++...+.. ..........++.++++.+|+.. ..++.+.+|||||
T Consensus 68 ------~~~~i~~v~q~~~~------~~~~t~~en~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~ 133 (213)
T TIGR01277 68 ------YQRPVSMLFQENNL------FAHLTVRQNIGLGLHP-GLKLNAEQQEKVVDAAQQVGIAD-YLDRLPEQLSGGQ 133 (213)
T ss_pred ------hccceEEEeccCcc------CCCCcHHHHHHhHhhc-cCCccHHHHHHHHHHHHHcCcHH-HhhCCcccCCHHH
Confidence 01112222211100 0111222333211110 00111223567888999999964 4578999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+|||+++++..+||++++|++|++...
T Consensus 134 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 99999999999999999999999999999999999988754 57999999999999999999999999999643
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=305.50 Aligned_cols=205 Identities=21% Similarity=0.291 Sum_probs=161.6
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCcceEEECCc----------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-----PTEGEVRRSQK---------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-----p~~G~I~~~~~---------- 559 (723)
+|+++||++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|++. |++|+|.+++.
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 5889999999975 358999999999999999999999999999999999864 48999987652
Q ss_pred ---eeEEEEccccccccCccccHHHHHHhhC--CCCCC-CcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHHHH
Q 048654 560 ---LRIGRYSQHFVDLLTMEETPVSYLLRLH--PDQEG-LSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 ---~~ig~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|...- +. .+....+.... ..... ....+.+..+++.+|+... ..++++..|||||||||+|
T Consensus 81 ~~~~~i~~~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 81 ELRKKVGMVFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI 157 (250)
T ss_pred HHhhheEEEecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence 248999987421 11 12222221111 11000 0123456778899887431 2246788999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|+||||||||+|||+.++..+.++|.++. .|||+||||++++..+|| ++++|++|+++. .|++++
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~-----~i~~l~~G~i~~-~g~~~~ 231 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSK-----YTSFFLNGEIIE-SGLTDQ 231 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcC-----EEEEEECCeEEE-eCCHHH
Confidence 999999999999999999999999999999998874 589999999999999984 999999999974 588877
Q ss_pred HH
Q 048654 709 YK 710 (723)
Q Consensus 709 ~~ 710 (723)
+.
T Consensus 232 ~~ 233 (250)
T PRK14266 232 IF 233 (250)
T ss_pred HH
Confidence 64
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=282.71 Aligned_cols=211 Identities=31% Similarity=0.381 Sum_probs=160.3
Q ss_pred ceEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAAR----GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~----~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.|+++++++..+ ...||++|+|.|.+||.++|||||||||||||-+++|+.. |.+|+|.+.++.....+.....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHH
Confidence 588999999875 3579999999999999999999999999999999999865 4567788888877655443322
Q ss_pred HHHHhhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 241 AVVSAHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 241 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
. ++ ..++++.++... .+.....+++.-..+ +..-......+.+.++|+.+||... ...++.
T Consensus 84 ~----------~R~~~vGfVFQSF~L------ip~ltAlENV~lPle-L~ge~~~~~~~~A~~lL~~vGLg~R-l~HyP~ 145 (228)
T COG4181 84 A----------LRARHVGFVFQSFHL------IPNLTALENVALPLE-LRGESSADSRAGAKALLEAVGLGKR-LTHYPA 145 (228)
T ss_pred H----------hhccceeEEEEeeec------cccchhhhhccchhh-hcCCccccHHHHHHHHHHHhCcccc-cccCcc
Confidence 1 11 223333322111 011122222222211 1111244556779999999999854 478999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC----RWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~----~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+|||||||||+|||||+..|+||+.||||.+||..+-..+.++|- +.+.|+|+||||+..+.+ |+|++.|.+|+|
T Consensus 146 qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l 224 (228)
T COG4181 146 QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRL 224 (228)
T ss_pred ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeeccee
Confidence 999999999999999999999999999999999999888777764 447899999999999987 999999999998
Q ss_pred E
Q 048654 396 H 396 (723)
Q Consensus 396 ~ 396 (723)
+
T Consensus 225 ~ 225 (228)
T COG4181 225 V 225 (228)
T ss_pred c
Confidence 5
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=297.46 Aligned_cols=217 Identities=30% Similarity=0.392 Sum_probs=160.7
Q ss_pred CCccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 161 ANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 161 ~~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
...+.|+++|+++.|+++++|+|+||+|++||+|+|+|||||||||||++|+|...|. ++.+.+++......+..
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~~~G~~~~~--- 101 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETI--- 101 (257)
T ss_pred CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeeeeccCCcch---
Confidence 3456799999999999999999999999999999999999999999999999976554 55666666554321110
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcC--CCCCCCCCchhhHHHHHHHHHHHHHh---cCchHHHHHHHHHHHhCCCCccccC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTS--VDGEEDGDDANDAGEKLAELYEKLQI---LGSDAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
..+++.++++...-. ........+.. +..++..... .-.+....++..+|+.+|+.. +.+
T Consensus 102 ---------~elrk~IG~vS~~L~~~~~~~~~v~dvV-----lSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~ 166 (257)
T COG1119 102 ---------FELRKRIGLVSSELHERFRVRETVRDVV-----LSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LAD 166 (257)
T ss_pred ---------HHHHHHhCccCHHHHhhcccccccceee-----eecccccccccccCCCHHHHHHHHHHHHHcchhh-hcc
Confidence 122223222210000 00000000000 0000111111 112455678999999999974 679
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----cEEEEEeCCHHHHHhhCCEEEEE
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK-----KTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~-----~TVIivsHdl~~l~~iad~Ii~L 390 (723)
++..+||-||||||.|||||+.+|.+|||||||+|||..++..+.++|.++. .++|+|||..+++..+.++++.+
T Consensus 167 r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll 246 (257)
T COG1119 167 RPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246 (257)
T ss_pred CchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEe
Confidence 9999999999999999999999999999999999999999999999998762 48999999999999999999999
Q ss_pred eCCEEEE
Q 048654 391 HDQKLHF 397 (723)
Q Consensus 391 ~~G~i~~ 397 (723)
.+|+++.
T Consensus 247 ~~g~v~~ 253 (257)
T COG1119 247 KEGEVVA 253 (257)
T ss_pred eCCceee
Confidence 9999863
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=322.90 Aligned_cols=216 Identities=24% Similarity=0.278 Sum_probs=160.7
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee----ecCCChHHHHHHHHh
Q 048654 170 NFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE----VVGDDRSAIQAVVSA 245 (723)
Q Consensus 170 nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~----~~~~~~~~~~~~~~~ 245 (723)
++.+.|+...+|+|+||+|++|++++|+|+||||||||+++|+|++.| ..|+|.+.++. +...+..
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~-------- 98 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAA-------- 98 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHH--------
Confidence 466778999999999999999999999999999999999999998765 45667665542 2111111
Q ss_pred hHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 246 HEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 246 ~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
....++ ..++++.+.... .....+.+++..... +..+.......++.++++.+||.. ..++++.+||||
T Consensus 99 --~l~~~r~~~i~~vfQ~~~l------~p~~Tv~eNi~~~~~-~~g~~~~~~~~~a~e~le~vgL~~-~~~~~~~~LSgG 168 (382)
T TIGR03415 99 --TLRRLRTHRVSMVFQKFAL------MPWLTVEENVAFGLE-MQGMPEAERRKRVDEQLELVGLAQ-WADKKPGELSGG 168 (382)
T ss_pred --HHHHHhcCCEEEEECCCcC------CCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHH
Confidence 111111 123333322111 111233343332211 112233445678899999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+.++.++++.|.++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 169 q~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g 247 (382)
T TIGR03415 169 MQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HG 247 (382)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ec
Confidence 999999999999999999999999999999999999988754 6799999999999999999999999999975 47
Q ss_pred ChhhHH
Q 048654 401 NFDDFE 406 (723)
Q Consensus 401 ~~~~~~ 406 (723)
+.+++.
T Consensus 248 ~~~ei~ 253 (382)
T TIGR03415 248 TPEEIV 253 (382)
T ss_pred CHHHHh
Confidence 766653
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=301.62 Aligned_cols=202 Identities=28% Similarity=0.397 Sum_probs=146.2
Q ss_pred ceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 165 DITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 165 ~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
.|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+..|. .|+|.+.++.+......
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~----- 74 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIRQLDPA----- 74 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCeEEECCEEhHHCCHH-----
Confidence 3789999999975 57999999999999999999999999999999999987554 55666655543211110
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCC------
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGR------ 316 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~------ 316 (723)
.++..++++.+.... . ...+.+ .+..........++.++++.+++.+. .++
T Consensus 75 --------~~~~~i~~~~q~~~~------~-~~tv~e-------~l~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~ 131 (220)
T cd03245 75 --------DLRRNIGYVPQDVTL------F-YGTLRD-------NITLGAPLADDERILRAAELAGVTDF-VNKHPNGLD 131 (220)
T ss_pred --------HHHhhEEEeCCCCcc------c-cchHHH-------HhhcCCCCCCHHHHHHHHHHcCcHHH-HHhcccccc
Confidence 011222222221100 0 011111 11110000112345567777777532 233
Q ss_pred -----CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCHHHHHhhCCEEEE
Q 048654 317 -----PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 317 -----~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~--~TVIivsHdl~~l~~iad~Ii~ 389 (723)
.+.+|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++. .|||+||||++++ .+||+|++
T Consensus 132 ~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~ 210 (220)
T cd03245 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIV 210 (220)
T ss_pred ceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEE
Confidence 357999999999999999999999999999999999999999999998763 6999999999987 69999999
Q ss_pred EeCCEEEE
Q 048654 390 LHDQKLHF 397 (723)
Q Consensus 390 L~~G~i~~ 397 (723)
|++|+++.
T Consensus 211 l~~g~i~~ 218 (220)
T cd03245 211 MDSGRIVA 218 (220)
T ss_pred EeCCeEee
Confidence 99999863
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=336.07 Aligned_cols=202 Identities=22% Similarity=0.268 Sum_probs=160.8
Q ss_pred EEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------eeEEEE
Q 048654 498 LIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------LRIGRY 565 (723)
Q Consensus 498 ~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~~ig~~ 565 (723)
++|++++|++ ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.++++ ..++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999975 35899999999999999999999999999999999999999999998763 248999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCC-CCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQ-EGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
+|... ..+++.++.... ....... ... ...+.+.++++.+++.... ++++.+|||||||||+|||||+.+|+||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLG-RYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-RAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred ecccccccCCCHHHHhhcc-cccccccccCHHHHHHHHHHHHHHcCCCCCc-cCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99742 222333321110 0000000 000 1124577899999997544 4678999999999999999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 642 LLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 642 lLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||||||+|||+.++..|.++|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d-----~i~~l~~G~i~~-~~~~~~~ 221 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCD-----EITILRDGQWIA-TQPLAGL 221 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEe-ecChhhC
Confidence 999999999999999999999886 3689999999999999995 999999999974 5666554
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=291.28 Aligned_cols=160 Identities=34% Similarity=0.570 Sum_probs=134.2
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce----------eEEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL----------RIGRY 565 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~----------~ig~~ 565 (723)
|+++|+++.|++. .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEE
Confidence 4689999999753 58999999999999999999999999999999999999999999887642 35666
Q ss_pred ccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEecc
Q 048654 566 SQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645 (723)
Q Consensus 566 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDE 645 (723)
+|... +....+ +.+.+. |||||+|||+|||||+.+|+||||||
T Consensus 79 ~q~~~--~~~~~t--------------------v~~~~~---------------LS~G~~qrv~laral~~~p~illlDE 121 (173)
T cd03230 79 PEEPS--LYENLT--------------------VRENLK---------------LSGGMKQRLALAQALLHDPELLILDE 121 (173)
T ss_pred ecCCc--cccCCc--------------------HHHHhh---------------cCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 66421 000001 111110 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 646 PTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
||++||+.++..+.++|+++. .|||++|||.+++..+|| ++++|++|++
T Consensus 122 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d-----~i~~l~~g~i 173 (173)
T cd03230 122 PTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCD-----RVAILNNGRI 173 (173)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCC-----EEEEEeCCCC
Confidence 999999999999999998873 589999999999999985 9999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=302.35 Aligned_cols=185 Identities=29% Similarity=0.411 Sum_probs=158.2
Q ss_pred CCeEEEEEEEEEcCCCc-------ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEE
Q 048654 493 PPLLQLIEVSFSYPNRE-------DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRY 565 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~-------~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~ 565 (723)
.++++++|+++.|+.+. ..+++||||+|.+||+++|||.||||||||-|+|.|+++|++|+|++.++...
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~--- 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT--- 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh---
Confidence 35899999999996432 35799999999999999999999999999999999999999999998876310
Q ss_pred ccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEecc
Q 048654 566 SQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645 (723)
Q Consensus 566 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDE 645 (723)
.+. .....+++.++|+.+|+......+.+.+|||||+|||+|||||+.+|+++++||
T Consensus 79 ------~~~-----------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 79 ------KLS-----------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred ------hcc-----------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecC
Confidence 000 001345688999999998766667779999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 646 PTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||++||...+.++.++|.++ +.+.++||||+..+..+|| ||.||..|+|++. |+.+++
T Consensus 136 pvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd-----ri~VMy~G~iVE~-g~~~~~ 197 (268)
T COG4608 136 PVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD-----RIAVMYLGKIVEI-GPTEEV 197 (268)
T ss_pred chhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc-----cEEEEecCceeEe-cCHHHH
Confidence 99999999999999998776 3589999999999999995 9999999999975 555543
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=299.39 Aligned_cols=208 Identities=26% Similarity=0.370 Sum_probs=149.1
Q ss_pred ceEEEeEEEEeCC-------eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEee-e---eecC
Q 048654 165 DITIDNFSVAARG-------KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVE-Q---EVVG 233 (723)
Q Consensus 165 ~I~l~nls~~y~~-------~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~-q---~~~~ 233 (723)
+|+++|++++|++ +++|+|+||+|.+|++++|+|+||||||||+++|+|++.|. .|.|.+.+ . ++..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVRHEGAWVDLAQ 78 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEEecCCCccchhh
Confidence 3789999999963 47999999999999999999999999999999999987654 45565542 1 1111
Q ss_pred CChHHHHHHHHhhHHHHHH-HHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc
Q 048654 234 DDRSAIQAVVSAHEELVKL-REEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE 312 (723)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~ 312 (723)
.... ....+ ...++++.+.... .....+.+.+...... ..........++.++++.+|+...
T Consensus 79 ~~~~----------~~~~~~~~~i~~~~q~~~~------~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~ 141 (224)
T TIGR02324 79 ASPR----------EVLEVRRKTIGYVSQFLRV------IPRVSALEVVAEPLLE-RGVPREAARARARELLARLNIPER 141 (224)
T ss_pred cCHH----------HHHHHHhcceEEEeccccc------CCCccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchh
Confidence 1100 00011 1122333221110 0111222222211111 112223345678899999999754
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 313 ~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+|||+++++..+||+|+.
T Consensus 142 ~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 142 LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMD 221 (224)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEe
Confidence 446889999999999999999999999999999999999999999999999865 57999999999999999999998
Q ss_pred Ee
Q 048654 390 LH 391 (723)
Q Consensus 390 L~ 391 (723)
+.
T Consensus 222 ~~ 223 (224)
T TIGR02324 222 VT 223 (224)
T ss_pred cC
Confidence 63
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=301.68 Aligned_cols=213 Identities=24% Similarity=0.382 Sum_probs=147.4
Q ss_pred ceEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+..|. .|+|.+.+..+.......+
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~---- 75 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ--KGQILIDGIDIRDISRKSL---- 75 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEeHHHcCHHHH----
Confidence 3789999999975 57999999999999999999999999999999999987554 5566665554322111111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHH-----HHHHHHHHHhC--CCCccccCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAA-----EAQASKILAGL--GFTKEMQGR 316 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~L~~l--gl~~~~~~~ 316 (723)
+..++++.+.... ....+.+++.... ........ ...+..+++.+ |+... .++
T Consensus 76 ---------~~~i~~~~q~~~~-------~~~tv~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ 135 (229)
T cd03254 76 ---------RSMIGVVLQDTFL-------FSGTIMENIRLGR---PNATDEEVIEAAKEAGAHDFIMKLPNGYDTV-LGE 135 (229)
T ss_pred ---------hhhEEEecCCchh-------hhhHHHHHHhccC---CCCCHHHHHHHHHHhChHHHHHhCcccccCH-hhc
Confidence 1111111110000 0001111110000 00000000 01223444444 55433 457
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++.+|||||||||+|||||+.+|++|||||||++||+.++.+|.++|+++ +.|||+|||+++++.. ||+|++|++|+
T Consensus 136 ~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~ 214 (229)
T cd03254 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGK 214 (229)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCe
Confidence 78999999999999999999999999999999999999999999999876 4799999999999975 99999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|+++++
T Consensus 215 ~~~-~~~~~~~ 224 (229)
T cd03254 215 IIE-EGTHDEL 224 (229)
T ss_pred EEE-eCCHHHH
Confidence 964 5666554
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=297.29 Aligned_cols=186 Identities=25% Similarity=0.352 Sum_probs=150.0
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce--------eEEEEc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL--------RIGRYS 566 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~--------~ig~~~ 566 (723)
+|+++|+++.|++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|++
T Consensus 2 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 2 MLEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 68999999999753 58999999999999999999999999999999999999999999987642 367887
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|... ...++.++.. +...... . ....+.++++.+||.... .+++.+|||||||||+|||||+.+|++||||
T Consensus 80 ~~~~~~~~~tv~~~l~-~~~~~~~----~-~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllD 152 (207)
T PRK13539 80 HRNAMKPALTVAENLE-FWAAFLG----G-EELDIAAALEAVGLAPLA-HLPFGYLSAGQKRRVALARLLVSNRPIWILD 152 (207)
T ss_pred CCCcCCCCCcHHHHHH-HHHHhcC----C-cHHHHHHHHHHcCCHHHH-cCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6532 1223333221 1111111 1 234578899999997543 4678999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEEC
Q 048654 645 EPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVEN 696 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~ 696 (723)
|||+|||+.++..+.++|.++ +.|||+||||.+++.. | +++.++.
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~-----~~~~~~~ 200 (207)
T PRK13539 153 EPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--A-----RELDLGP 200 (207)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--C-----cEEeecC
Confidence 999999999999999999876 4699999999999875 3 7777743
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=322.55 Aligned_cols=212 Identities=21% Similarity=0.292 Sum_probs=155.8
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHH
Q 048654 170 NFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEEL 249 (723)
Q Consensus 170 nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 249 (723)
||+++|+++.+ |+||+|++|++++|+|||||||||||++|+|+..| ..|+|.+.+.++....... ..
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~---------~~ 70 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGI---------FL 70 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCcccc---------cc
Confidence 89999988764 99999999999999999999999999999998754 4567777666543211000 00
Q ss_pred HHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHH
Q 048654 250 VKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRI 329 (723)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRv 329 (723)
...+..++++.+.... .....+.+++...+. .........++.++++.+||.. ..++++.+|||||||||
T Consensus 71 ~~~~~~i~~v~q~~~l------~~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGqkqRv 140 (354)
T TIGR02142 71 PPEKRRIGYVFQEARL------FPHLSVRGNLRYGMK---RARPSERRISFERVIELLGIGH-LLGRLPGRLSGGEKQRV 140 (354)
T ss_pred chhhCCeEEEecCCcc------CCCCcHHHHHHHHhh---ccChhHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHH
Confidence 0011122332221100 111123333322111 1122233567899999999974 55799999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChhhH
Q 048654 330 SLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 330 aLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~~~ 405 (723)
+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+.+++
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 219 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA-AGPIAEV 219 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE-ECCHHHH
Confidence 9999999999999999999999999999999988764 5799999999999999999999999999974 4665544
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=300.89 Aligned_cols=200 Identities=21% Similarity=0.267 Sum_probs=151.6
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|++.| ..|+|.+.+..+.... .
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i~~~~---~---- 80 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTATRGD---R---- 80 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEccchh---h----
Confidence 469999999999988999999999999999999999999999999999998754 4566766665442110 0
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
...++++.+.... .....+.+++.... .+ ........+.++++.+|+.. ..++++.+|||
T Consensus 81 ---------~~~i~~~~q~~~~------~~~~t~~e~l~~~~-~~---~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~ 140 (214)
T PRK13543 81 ---------SRFMAYLGHLPGL------KADLSTLENLHFLC-GL---HGRRAKQMPGSALAIVGLAG-YEDTLVRQLSA 140 (214)
T ss_pred ---------hhceEEeecCccc------ccCCcHHHHHHHHH-Hh---cCCcHHHHHHHHHHHcCChh-hccCChhhCCH
Confidence 0112222211000 00111222221111 11 11123456788999999974 45789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||++|||++++.++||++++|+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999999999999999999765 68999999999999999999999874
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=309.93 Aligned_cols=222 Identities=25% Similarity=0.317 Sum_probs=162.0
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC---CCCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP---VPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~---~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
+|.++||++.|+++++|+++||+|.+|++++|+|+|||||||||++|+|+..+ .|..|.|.+.+..+......
T Consensus 45 ~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~---- 120 (305)
T PRK14264 45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN---- 120 (305)
T ss_pred eEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc----
Confidence 59999999999999999999999999999999999999999999999998653 25677887776654311100
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHH-----------HhcC-chHHHHHHHHHHHhCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL-----------QILG-SDAAEAQASKILAGLGF 309 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~-~~~~~~~~~~~L~~lgl 309 (723)
...++..++++.+.... . ...+.+++....... .... ......++.++++.+++
T Consensus 121 -------~~~~~~~i~~v~q~~~l------~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 186 (305)
T PRK14264 121 -------LVELRKRVGMVFQSPNP------F-PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL 186 (305)
T ss_pred -------HHHHhhceEEEccCCcc------c-cccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC
Confidence 00112223333221110 0 011222222111100 0011 12234668889999987
Q ss_pred Cc---cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhC
Q 048654 310 TK---EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 310 ~~---~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~ia 384 (723)
.. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+|||+++++..+|
T Consensus 187 ~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~ 266 (305)
T PRK14264 187 WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARIS 266 (305)
T ss_pred chhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhc
Confidence 42 2346889999999999999999999999999999999999999999999999876 469999999999999999
Q ss_pred CEE-EEEeCCEEEEecCChhhH
Q 048654 385 TEI-IHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 385 d~I-i~L~~G~i~~~~g~~~~~ 405 (723)
|++ ++|++|+++. .|+.+++
T Consensus 267 d~i~~~l~~G~i~~-~g~~~~~ 287 (305)
T PRK14264 267 DQTAVFLTGGELVE-YDDTDKI 287 (305)
T ss_pred CEEEEEecCCEEEE-eCCHHHH
Confidence 997 5789999975 4776554
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=283.59 Aligned_cols=200 Identities=29% Similarity=0.441 Sum_probs=163.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce------eEEEEcc
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL------RIGRYSQ 567 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~------~ig~~~q 567 (723)
+++.+++++.+|++....+|+|+|++|.+||.++++||+|||||||||+++|+.+|+.|+|.++++. .-|.++|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 4678899999999876678999999999999999999999999999999999999999999988762 4588999
Q ss_pred cc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEecc
Q 048654 568 HF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645 (723)
Q Consensus 568 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDE 645 (723)
+. .+.+++.+|. .+-+....- ......+.+.++|..+||.+.. ++.+.+|||||||||.|||||+.+|++|+|||
T Consensus 82 ~~~LlPWl~~~dNv-afgL~l~Gi-~k~~R~~~a~q~l~~VgL~~~~-~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE 158 (259)
T COG4525 82 NEALLPWLNVIDNV-AFGLQLRGI-EKAQRREIAHQMLALVGLEGAE-HKYIWQLSGGMRQRVGIARALAVEPQLLLLDE 158 (259)
T ss_pred cCccchhhHHHHHH-HHHHHhcCC-CHHHHHHHHHHHHHHhCccccc-ccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence 74 2334444442 222222111 1112345678899999998765 56789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEE--CCeEEe
Q 048654 646 PTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVE--NGTVSR 701 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~--~G~i~~ 701 (723)
|+.+||.-+++.+.++|-++ +..+++||||++++.-++ +|++||. .|+|++
T Consensus 159 PfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfla-----trLvvlsp~pgRvv~ 215 (259)
T COG4525 159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLA-----TRLVVLSPGPGRVVE 215 (259)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhh-----heeEEecCCCceeeE
Confidence 99999999999988887654 468999999999999888 4999997 578874
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=308.52 Aligned_cols=216 Identities=24% Similarity=0.296 Sum_probs=155.5
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.|+++|++++|+ ++++|+|+||+|.+|++++|+|||||||||||++|+|++.| ..|+|.+.+..+... .
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~----~---- 75 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPTRQA----L---- 75 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEhHHh----h----
Confidence 489999999995 57899999999999999999999999999999999998754 456666655443100 0
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHH-HHHHHh--cCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAEL-YEKLQI--LGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
....++++.+....... ......+.+... +..... ........++.++++.+|+.. ..++++.+
T Consensus 76 --------~~~~i~~v~q~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~ 142 (272)
T PRK15056 76 --------QKNLVAYVPQSEEVDWS----FPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGE 142 (272)
T ss_pred --------ccceEEEeccccccccC----CCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-HhcCCccc
Confidence 00011222111000000 000001110000 000000 111233456788999999974 45789999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+++++ +|+++.
T Consensus 143 LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 143 LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 9999999999999999999999999999999999999999999865 579999999999999999999887 899864
Q ss_pred ecCChhhH
Q 048654 398 YRGNFDDF 405 (723)
Q Consensus 398 ~~g~~~~~ 405 (723)
.|+.+++
T Consensus 222 -~g~~~~~ 228 (272)
T PRK15056 222 -SGPTETT 228 (272)
T ss_pred -ecCHHhc
Confidence 4666554
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=341.65 Aligned_cols=246 Identities=27% Similarity=0.344 Sum_probs=176.0
Q ss_pred HHhhhhhcccccccccCccccccCCccccCCccceEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEECCCCccHHHHHH
Q 048654 132 KEALRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGK--ELLKSTSVRISHGKRYGLVGPNGMGKSTLLK 209 (723)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~nls~~y~~~--~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk 209 (723)
.++|.+-.+.++...+.... ...+.-...|+++|++|+|+.. ++|+|+||+|++||++||||+||||||||+|
T Consensus 443 ~~rL~dil~~~~E~~~~~~~-----~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~K 517 (709)
T COG2274 443 LERLGDILDTPPEQEGDKTL-----IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLK 517 (709)
T ss_pred HHHHHHHhcCCccccccccc-----ccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHH
Confidence 35677777777665444320 0112334469999999999765 6999999999999999999999999999999
Q ss_pred HHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH--
Q 048654 210 LLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK-- 287 (723)
Q Consensus 210 ~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 287 (723)
+|+|++.| ..|+|.+.+.++...+.. .+++.++++.+..... .-.+.+++......
T Consensus 518 LL~gly~p--~~G~I~~dg~dl~~i~~~-------------~lR~~ig~V~Q~~~Lf-------~gSI~eNi~l~~p~~~ 575 (709)
T COG2274 518 LLLGLYKP--QQGRILLDGVDLNDIDLA-------------SLRRQVGYVLQDPFLF-------SGSIRENIALGNPEAT 575 (709)
T ss_pred HHhcCCCC--CCceEEECCEeHHhcCHH-------------HHHhheeEEcccchhh-------cCcHHHHHhcCCCCCC
Confidence 99999865 456677777665543332 3455555543321110 00011111000000
Q ss_pred HHhcCchHHHHHHHHHHHhC--CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 288 LQILGSDAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 288 l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
...+-.....+-+++++..+ |+.... ......||||||||++|||||+++|+|||||||||+||+.+...+.+.|.+
T Consensus 576 ~e~i~~A~~~ag~~~fI~~lP~gy~t~v-~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 576 DEEIIEAAQLAGAHEFIENLPMGYDTPV-GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654 (709)
T ss_pred HHHHHHHHHHhCcHHHHHhccccccccc-ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH
Confidence 00000112234566777776 776443 577889999999999999999999999999999999999999999999998
Q ss_pred cC--cEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChhhHHh
Q 048654 366 WK--KTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407 (723)
Q Consensus 366 ~~--~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~~~~~ 407 (723)
+. +|+|+|||+++.+.. ||+|+||++|+|+. .|+.+++..
T Consensus 655 ~~~~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~-~gs~~ell~ 696 (709)
T COG2274 655 ILQGRTVIIIAHRLSTIRS-ADRIIVLDQGKIVE-QGSHEELLA 696 (709)
T ss_pred HhcCCeEEEEEccchHhhh-ccEEEEccCCceec-cCCHHHHHH
Confidence 74 899999999999986 99999999999974 688777643
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=302.81 Aligned_cols=210 Identities=25% Similarity=0.405 Sum_probs=147.4
Q ss_pred CccceEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHH
Q 048654 162 NVKDITIDNFSVAARG---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~ 238 (723)
...+|+++|++++|++ .++|+|+||+|.+|++++|+||||||||||+++|+|+..| ..|+|.+.+..+.......
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCchHHcCHHH
Confidence 4557999999999975 4799999999999999999999999999999999998755 4566666554432111111
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH--HHhcCchHHHHHHHHHHHhC--CCCcccc
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK--LQILGSDAAEAQASKILAGL--GFTKEMQ 314 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~L~~l--gl~~~~~ 314 (723)
. +..++++.+.... ....+.+++...... ...+........+.++++.+ |+... .
T Consensus 86 ~-------------~~~i~~~~q~~~l-------~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~-~ 144 (226)
T cd03248 86 L-------------HSKVSLVGQEPVL-------FARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE-V 144 (226)
T ss_pred H-------------HhhEEEEecccHH-------HhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccch-h
Confidence 1 1111111110000 000001111000000 00000001112356778888 77643 4
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
++++.+|||||||||+|||||+.+|++|||||||++||+.++.+|.++|+++ +.|||+||||++++.. ||+|++|++
T Consensus 145 ~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~ 223 (226)
T cd03248 145 GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDG 223 (226)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecC
Confidence 7889999999999999999999999999999999999999999999999875 3699999999999975 999999999
Q ss_pred CEE
Q 048654 393 QKL 395 (723)
Q Consensus 393 G~i 395 (723)
|++
T Consensus 224 g~i 226 (226)
T cd03248 224 GRI 226 (226)
T ss_pred CcC
Confidence 864
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=284.78 Aligned_cols=158 Identities=28% Similarity=0.371 Sum_probs=130.6
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++|+++.|+++++|+++||+|++|++++|+||||||||||+++|+|+..| ..|+|.+.+..+...+..
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~-------- 70 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVSFASPR-------- 70 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECCcCCHH--------
Confidence 5789999999999999999999999999999999999999999999998754 456666655443211000
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.. .-..+++ +.+|||||
T Consensus 71 ----------------------------------------~~---------------~~~~i~~--------~~qLS~G~ 87 (163)
T cd03216 71 ----------------------------------------DA---------------RRAGIAM--------VYQLSVGE 87 (163)
T ss_pred ----------------------------------------HH---------------HhcCeEE--------EEecCHHH
Confidence 00 0000111 11299999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
+||++|||||+.+|++|||||||++||+.++..+.++|+++ +.|||++|||++++..+||++++|++|+++
T Consensus 88 ~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999865 579999999999999999999999999985
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=303.51 Aligned_cols=208 Identities=25% Similarity=0.270 Sum_probs=164.3
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CcceEEECCc--------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-----TEGEVRRSQK-------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-----~~G~I~~~~~-------- 559 (723)
++.+.++++++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 6 ~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 6 PIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred CceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 467899999999975 3589999999999999999999999999999999999986 7999987653
Q ss_pred -----eeEEEEcccccc-ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC---CCcCCCCCCCHHHHHHHHH
Q 048654 560 -----LRIGRYSQHFVD-LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH---NHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 -----~~ig~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~---~~~~~i~~LSGGqkqRv~l 630 (723)
..++|++|.... ..++.++.... ..... . .......+.++++.+++... ....++.+|||||+||++|
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~-~~~~~-~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFG-LRLNR-Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHH-HhhcC-c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 237899887421 12222222111 11111 0 00123467888999998532 1235678999999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEE--------CCeEE
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVE--------NGTVS 700 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~--------~G~i~ 700 (723)
||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| +|++|+ +|+++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d-----~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVAD-----TTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC-----EEEEEecccccccCCceEE
Confidence 999999999999999999999999999999999874 589999999999999995 999996 89998
Q ss_pred ecCCCHHHHHH
Q 048654 701 RFPGTFEEYKE 711 (723)
Q Consensus 701 ~~~g~~~~~~~ 711 (723)
. .|+.+++.+
T Consensus 236 ~-~g~~~~~~~ 245 (261)
T PRK14263 236 E-MGPTAQIFQ 245 (261)
T ss_pred E-eCCHHHHHh
Confidence 5 478777653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 723 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-33 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-18 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-13 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 5e-28 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-18 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-13 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 6e-28 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 4e-18 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-13 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-18 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-17 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-17 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-12 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-12 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-11 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-11 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-11 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-11 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-06 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-11 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-10 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-10 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-10 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-10 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 8e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 9e-10 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-09 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-09 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-09 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-09 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-09 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 4e-09 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 7e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 7e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 7e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-08 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-08 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-08 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-08 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 5e-08 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 7e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-08 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 8e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-08 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-07 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-07 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-07 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-07 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 4e-07 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-07 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-07 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-07 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-06 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 8e-07 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-07 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-06 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-06 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-06 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-06 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 5e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 5e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 6e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 8e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 1e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 6e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 9e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 9e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-04 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 8e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 723 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-118 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-40 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-38 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-59 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-25 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-52 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-26 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-23 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-43 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-41 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-21 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-30 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 6e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 6e-29 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 5e-07 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-28 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 5e-21 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-26 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-13 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-26 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-14 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-26 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-21 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 7e-07 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-20 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-09 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-04 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-19 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-15 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-19 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-04 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 8e-19 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 9e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-19 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-06 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-06 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 9e-19 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-05 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-05 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-18 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 7e-07 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 7e-18 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 5e-05 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-17 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-08 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-16 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-04 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-16 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-08 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-07 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 6e-13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-10 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-11 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-11 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-05 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-11 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 7e-11 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 8e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-10 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 6e-04 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-10 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-05 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-10 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 8e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-10 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-10 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-10 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-10 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 9e-05 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 6e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-05 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 7e-04 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-09 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-09 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 5e-06 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-04 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 9e-04 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 3e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 6e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-04 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 8e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 1e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-04 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 2e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-04 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 3e-04 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-04 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 4e-04 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 4e-04 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 7e-04 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 7e-04 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 8e-04 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 377 bits (968), Expect = e-118
Identities = 149/715 (20%), Positives = 245/715 (34%), Gaps = 125/715 (17%)
Query: 59 KAVAKPSYTDGIDLPPSDDEDDYALDEEIDAKKQLHRQQKDESKQLEISVTDKELKKREK 118
+ V D I + L + K + + I+ +L
Sbjct: 323 RRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERI 382
Query: 119 KDMLAAHHAEQAKKEALRDDHDAFTVVIGSRT------SVLEGQDDADANVKDITIDNFS 172
D A + A ++ R V DD + +D+ FS
Sbjct: 383 IDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFS 442
Query: 173 VAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK---IPVPKNIDVLLVEQ 229
+A K LL T +R+ +RYG+ GPNG GKSTL++ +A + P + + VE
Sbjct: 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEH 502
Query: 230 EVVG--DDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK 287
++ G D S + V +
Sbjct: 503 DIDGTHSDTSVLDFVFESGVG--------------------------------------- 523
Query: 288 LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
+ L GFT EM P + SGGW+M+++LARA+ +LLLDEP
Sbjct: 524 --------TKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575
Query: 348 TNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
TNHLD V WL YL T + +SHD FL+ VC II+ KL Y+GNF +F
Sbjct: 576 TNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635
Query: 408 GYEQRRKEMNKKFEIYE---------KQVKAAKRSGNRVQ--------QEKVKDRAKSAA 450
+ E + VK +++ +V K + +
Sbjct: 636 KCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQ 695
Query: 451 AKEASKNKAKG----------KVDEDEPLPEAPKKWRDYSVEF-----HFPEPTELTPPL 495
+S+ G V E LP + + + + H E
Sbjct: 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDK 755
Query: 496 LQLIEVSFSYPNRED----------------------FKLSDVD---VGIDMGTRVAIVG 530
+ + + ED FK+ GI +
Sbjct: 756 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 815
Query: 531 PNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ 590
N+ + + G + ++ + +
Sbjct: 816 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPL 875
Query: 591 EGLSKQEAVRAKLGKFGL-PSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH 649
++ + GL P + I LSGGQK ++V + + +PH+++LDEPTN+
Sbjct: 876 ----TRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 650 LDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPG 704
LD S+ AL+ AL EF GGV++++H + + + E+W V++G ++
Sbjct: 932 LDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTE-----EVWAVKDGRMTPSGH 981
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 159 bits (402), Expect = 2e-40
Identities = 32/249 (12%), Positives = 84/249 (33%), Gaps = 8/249 (3%)
Query: 156 QDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215
Q + + + ++ M K ++ R
Sbjct: 743 QHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRR- 801
Query: 216 IPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDAN 275
I + ++ ++ + + R ++ + E + +
Sbjct: 802 ------IAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHS 855
Query: 276 DAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE-MQGRPTKSFSGGWRMRISLARA 334
++ + + + LG E + + SGG ++++ LA
Sbjct: 856 KMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAG 915
Query: 335 LFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQK 394
+ +P L++LDEPTN+LD ++ L + L ++ +++++H +F + E+ + D +
Sbjct: 916 TWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGR 975
Query: 395 LHFYRGNFD 403
+ N+
Sbjct: 976 MTPSGHNWV 984
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 1e-38
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 14/230 (6%)
Query: 482 EFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLN 541
P + L FS L+ + + R I GPNG GKSTL+
Sbjct: 420 IPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMR 479
Query: 542 LLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA 601
+A +G + + R Y +H +D + + + ++ + G+ +EA++
Sbjct: 480 AIANGQ--VDGFPTQEE-CRTV-YVEHDIDGTHSDTSVLDFV-----FESGVGTKEAIKD 530
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661
KL +FG PI+ LSGG K ++ + ILLLDEPTNHLD ++ L +
Sbjct: 531 KLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590
Query: 662 LDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711
L+ + +SHDS + VC+ I E + ++ G F E+ +
Sbjct: 591 LNTCGITSITISHDSVFLDNVCEY-----IINYEGLKLRKYKGNFTEFVK 635
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 8e-59
Identities = 115/572 (20%), Positives = 196/572 (34%), Gaps = 104/572 (18%)
Query: 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221
N+ + ++ + + G G+VGPNG GK+T +K+LA ++ P
Sbjct: 88 NLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA-GQLI-PNL 145
Query: 222 IDVLLVEQEVV----GDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEE-DGDDAND 276
+ V+ G++ + E ++ + L +V G+ + D
Sbjct: 146 CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDL-LPKAVKGKVRELLKKVD 204
Query: 277 AGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALF 336
K E+ ++L++ + + R SGG R+++A AL
Sbjct: 205 EVGKFEEVVKELEL--------------------ENVLDRELHQLSGGELQRVAIAAALL 244
Query: 337 VQPTLLLLDEPTNHLDLRA---VLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQ 393
+ DEP+++LD+R V + L K ++VV HD L+ + I ++
Sbjct: 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYG- 303
Query: 394 KLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKE 453
G + F R + + ++ E V+ R +
Sbjct: 304 ----EPGVYGIFSKPKGTR-----NGINEFLQ---------GYLKDENVRFRPYEIRFTK 345
Query: 454 ASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKL 513
S+ + L+E + FKL
Sbjct: 346 LSERVDVERE---------------------------------TLVEYPRLVKDYGSFKL 372
Query: 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLL 573
I G + IVGPNG GK+T + +LAG PTEG+V + Y ++
Sbjct: 373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV---AYKPQYIK-A 428
Query: 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633
E T V LL D L+ L G+ LSGG+ RV +
Sbjct: 429 EYEGT-VYELLS-KIDSSKLNSNFYKTELLKPLGIIDLYDRNV-EDLSGGELQRVAIAAT 485
Query: 634 SMSKPHILLLDEPTNHLD----MQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERS 689
+ I LLDEP+ +LD + A+ +++ ++V HD +I V D
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD----- 540
Query: 690 EIWV-----VENGTVSRFPGTFEEYKEDLQRE 716
+ V +G G E L
Sbjct: 541 RLIVFEGEPGRHGRALPPMGMREGMNRFLASV 572
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 62/252 (24%), Positives = 94/252 (37%), Gaps = 46/252 (18%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS-- 557
+ Y F L + G V IVGPNG GK+T + +LAG L P E S
Sbjct: 96 DCVHRYGVNA-FVL-YRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 558 ---------------QKLRIGRYSQ----HFVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598
++L+ G +VDLL +E L K +
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLP--------KAVKGKVRELLKKVDE 205
Query: 599 VRAKLGKFGLPSHNHLT--PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
V ++ + +LSGG+ RV + + K H DEP+++LD++
Sbjct: 206 VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 265
Query: 657 ALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVEN-----GTVSRFPGTFEE 708
+A + V++V HD ++ + D I VV G S+ GT
Sbjct: 266 KVARVIRRLANEGKAVLVVEHDLAVLDYLSD-----VIHVVYGEPGVYGIFSKPKGTRNG 320
Query: 709 YKEDLQREIKAE 720
E LQ +K E
Sbjct: 321 INEFLQGYLKDE 332
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 2e-52
Identities = 92/505 (18%), Positives = 179/505 (35%), Gaps = 86/505 (17%)
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR-SAIQAVVSAHEEL 249
G++G NG+GK+T+LK+LA IP + + + + EV+ R I
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF------ 78
Query: 250 VKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGF 309
+E ++ + + E+ K+ G + + ++L
Sbjct: 79 ---KELYSNELKIVHKIQYVEYASKF-LKGTVNEILTKIDERG---KKDEVKELLN---- 127
Query: 310 TKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK-- 367
+ + SGG R+ +A +L + + + D+P+++LD+R + + + +
Sbjct: 128 MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN 187
Query: 368 KTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQV 427
K ++VV HD L+ + I ++
Sbjct: 188 KYVIVVDHDLIVLDYLTDLIHIIY------------------------------------ 211
Query: 428 KAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPE 487
G +V KS AA+ N KG LP K R ++F E
Sbjct: 212 ------GESSVYGRVS---KSYAARVGINNFLKGY------LPAENMKIRPDEIKFMLKE 256
Query: 488 PTELTPPLLQLIEVSFSYPNRE----DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL 543
++L L + ++ + DF+L + G + I+GPNG GK+T +L
Sbjct: 257 VSDL--DLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARIL 314
Query: 544 AGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKL 603
G+++ EG V ++ + Q + + V L +
Sbjct: 315 VGEITADEGSVTPEKQ-ILSYKPQR---IFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370
Query: 604 GKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDALA 659
+ L LSGG+ ++ + + + +LD+P+++LD A+
Sbjct: 371 KRLNLHRLLESNV-NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIK 429
Query: 660 DALDEFTGGVVLVSHDSRLISRVCD 684
E ++ HD + + D
Sbjct: 430 RVTRERKAVTFIIDHDLSIHDYIAD 454
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-26
Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 31/245 (12%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
EV Y FKL + T + ++G NG GK+T+L +LAG++ P G+
Sbjct: 4 EVIHRY-KVNGFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG 61
Query: 555 --RRSQKLRIGRYSQHFVDLLTMEETPVS--------YLLRLHPDQEGLSKQEAVRAKLG 604
++ R +F +L + E V E L+K + K
Sbjct: 62 KDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDE 121
Query: 605 KFGLPSHNHLT--PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 662
L + +L LSGG R++ + + + + + D+P+++LD++ +A A+
Sbjct: 122 VKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181
Query: 663 DEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVEN-----GTVSRFPGTFEEYKEDLQR 715
E V++V HD ++ + D I ++ G VS+ L+
Sbjct: 182 RELLKNKYVIVVDHDLIVLDYLTD-----LIHIIYGESSVYGRVSKSYAARVGINNFLKG 236
Query: 716 EIKAE 720
+ AE
Sbjct: 237 YLPAE 241
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 38/279 (13%), Positives = 88/279 (31%), Gaps = 52/279 (18%)
Query: 158 DADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217
D ++K + G L + G+ G++GPNG+GK+T ++L +I
Sbjct: 261 DLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILV-GEIT 319
Query: 218 VPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDA 277
V +Q + + ++ ++ D + +
Sbjct: 320 -ADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLE----------------NASKDALSTS 362
Query: 278 GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337
E+ ++L + + SGG ++ +A L
Sbjct: 363 SWFFEEVTKRLNL--------------------HRLLESNVNDLSGGELQKLYIAATLAK 402
Query: 338 QPTLLLLDEPTNHLD----LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQ 393
+ L +LD+P+++LD ++ K ++ HD + + II +
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462
Query: 394 KLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKR 432
++G + + ++++ R
Sbjct: 463 PE----------KAGLATSPVTLKTGMNEFLRELEVTFR 491
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 3e-43
Identities = 105/577 (18%), Positives = 191/577 (33%), Gaps = 113/577 (19%)
Query: 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
+T +A +L + + R G+ GLVG NG+GKST LK+LA ++ P D
Sbjct: 81 AHVT---HRYSANSFKLHRLPTPR--PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135
Query: 224 VLLVEQEVVGDDR-SAIQAVVSAHEELVKLREEVASLQNSTSVD-------------GEE 269
QE++ R S +Q + L +++ ++ VD GE
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTK-----MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGEL 190
Query: 270 DGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRI 329
+ E + + LQ+ + + R + SGG R
Sbjct: 191 LKLRMEKSPEDVKRYIKILQL--------------------ENVLKRDIEKLSGGELQRF 230
Query: 330 SLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK---KTLVVVSHDRDFLNTVCTE 386
++ + + + + DEP+++LD++ L + + K ++ V HD L+ +
Sbjct: 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290
Query: 387 IIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRA 446
+ ++ + G S E + E ++ R
Sbjct: 291 VCIIYGVPSVY--GVVTLPASVREGIN-----------------IFLDGHIPAENLRFRT 331
Query: 447 KSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYP 506
++ + A + + + +
Sbjct: 332 EALQFRIA------------DATEDLQNDSASRAFSY------------------PSLKK 361
Query: 507 NREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYS 566
+ DF L+ + + ++G NG GK+TL+ LLAG L P EG+ KL +
Sbjct: 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP--KLNVSMKP 419
Query: 567 QHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA 626
Q T V L + L+ Q + + LSGG+
Sbjct: 420 QKI--APKFPGT-VRQLFFKKIRGQFLNPQFQTDV-VKPLRIDDIIDQEV-QHLSGGELQ 474
Query: 627 RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG----VVLVSHDSRLISRV 682
RV I L+DEP+ +LD + + + F +V HD + + +
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534
Query: 683 CDDEERSEIWVVENGT-VSRFPGTFEEYKEDLQREIK 718
D ++ V E + E R +K
Sbjct: 535 AD-----KVIVFEGIPSKNAHARAPESLLTGCNRFLK 566
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-22
Identities = 53/261 (20%), Positives = 83/261 (31%), Gaps = 45/261 (17%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
P V+ Y FKL + G + +VG NG GKST L +LAG P G
Sbjct: 76 PTNLEAHVTHRYSA-NSFKLHRLPT-PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 554 VRRS---------------QKLRIGRYSQ--------HFVDLLTMEETPVSYLLRLHPDQ 590
Q +VD + + ++ +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA---IKGPVQKVGEL 190
Query: 591 EGLSKQEAVRAKLGKFGLPSHNHLT--PIAKLSGGQKARVVFTSISMSKPHILLLDEPTN 648
L +++ + ++ I KLSGG+ R + + + + DEP++
Sbjct: 191 LKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250
Query: 649 HLDMQSIDALADALDEF---TGGVVLVSHD----SRLISRVC--DDEERSEIWVVENGTV 699
+LD++ A + T V+ V HD L VC G V
Sbjct: 251 YLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP------SVYGVV 304
Query: 700 SRFPGTFEEYKEDLQREIKAE 720
+ E L I AE
Sbjct: 305 TLPASVREGINIFLDGHIPAE 325
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-41
Identities = 116/536 (21%), Positives = 191/536 (35%), Gaps = 115/536 (21%)
Query: 178 KELLKSTSVR-------------ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
++L + R + G G+VGPNG GKST +K+LA + IP D
Sbjct: 21 EQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG-DN 79
Query: 225 LLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASL--------QNSTSVDGEE-DGDDAN 275
+ + + +Q KL+ +V G+ +
Sbjct: 80 DSWDGVIRAFRGNELQ------NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA 133
Query: 276 DAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL 335
D KL E+ + L++ + + R + SGG R+++A AL
Sbjct: 134 DETGKLEEVVKALEL--------------------ENVLEREIQHLSGGELQRVAIAAAL 173
Query: 336 FVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK---KTLVVVSHDRDFLNTVCTEIIHLHD 392
T DEP+++LD+R L + R K+++VV HD L+ + I ++
Sbjct: 174 LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYG 233
Query: 393 QKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAK 452
+ G + F R + + ++ E V+ R
Sbjct: 234 EP-----GVYGIFSQPKGTR-----NGINEFLR---------GYLKDENVRFRPYEIKFT 274
Query: 453 EASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFK 512
+ + E E L P+ +DY F+
Sbjct: 275 KTGERVEI----ERETLVTYPRLVKDY-----------------------------GSFR 301
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L I G + IVGPNG GK+T + +LAG PTEG++ + Y ++
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTV---AYKPQYIK- 357
Query: 573 LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632
E T V LL D L+ L G+ +LSGG+ RV +
Sbjct: 358 ADYEGT-VYELLS-KIDASKLNSNFYKTELLKPLGIIDLYDREV-NELSGGELQRVAIAA 414
Query: 633 ISMSKPHILLLDEPTNHLD----MQSIDALADALDEFTGGVVLVSHDSRLISRVCD 684
+ I LLDEP+ +LD + A+ +++ ++V HD +I V D
Sbjct: 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 470
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 9e-22
Identities = 46/220 (20%), Positives = 77/220 (35%), Gaps = 48/220 (21%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
G L+ I G+ G+VGPNG+GK+T +K+LA P +
Sbjct: 298 GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLA-GVEE-PTEGKIEWDLTVAYKPQY 355
Query: 237 SAI--QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSD 294
+ V EL+ + ++ EL + L I
Sbjct: 356 IKADYEGTV---YELL-----------------SKIDASKLNSNFYKTELLKPLGI---- 391
Query: 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-- 352
++ R SGG R+++A L + LLDEP+ +LD
Sbjct: 392 ----------------IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435
Query: 353 --LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390
L + + + +KT +VV HD ++ V ++
Sbjct: 436 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF 475
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 7e-21
Identities = 55/225 (24%), Positives = 83/225 (36%), Gaps = 46/225 (20%)
Query: 494 PLLQLIE----VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549
P + + Y F L + V + G V IVGPNG GKST + +LAG L P
Sbjct: 16 PRSHMEQLEEDCVHRY-GVNAFVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLIP 73
Query: 550 TEGEVRRS-----------------QKLRIGRYSQ----HFVDLL-TMEETPVSYLLRLH 587
S +KL+ G +VDL+ + V LL+
Sbjct: 74 NLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA 133
Query: 588 PDQEGLSKQEAVRAKLGKFGLPSHNHLT--PIAKLSGGQKARVVFTSISMSKPHILLLDE 645
+ K E V + L ++ I LSGG+ RV + + DE
Sbjct: 134 ---DETGKLEEV---VKALEL---ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDE 184
Query: 646 PTNHLDMQSIDALADALDEF---TGGVVLVSHD----SRLISRVC 683
P+++LD++ A A+ V++V HD L +
Sbjct: 185 PSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIH 229
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 33/220 (15%)
Query: 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
+ L+QL ++ + L + I G + + G NGAGK+TLLN+L T
Sbjct: 18 SHMLIQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS 75
Query: 552 GEVR-------------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL----S 594
G V + + IG S ++ E + ++ G+
Sbjct: 76 GTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 595 KQEAVRAK--LGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS---MSKPHILLLDEPTNH 649
+ A L G+ S I LS G+K RV+ I+ M +P +L+LDEP
Sbjct: 136 DEIRNEAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVM---IARALMGQPQVLILDEPAAG 191
Query: 650 LDMQSIDALADALDEF-----TGGVVLVSHDSRLISRVCD 684
LD + ++L LD T ++ V+H I+
Sbjct: 192 LDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS 231
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 36/244 (14%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I +D +GK +LK S +I+ G ++ L G NG GK+TLL +L + +++
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 226 LVEQEVVGDDRSAIQ---AVVSAHEEL-----VKLREEVASLQNSTSVDGEEDGDDANDA 277
VG ++ VS ++ + V S
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS------------------G 123
Query: 278 GEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337
K +Y+ + D +A ++L +G + + S G + R+ +ARAL
Sbjct: 124 AFKSIGVYQDI----DDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMG 178
Query: 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK-----TLVVVSHDRDFLNTVCTEIIHLHD 392
QP +L+LDEP LD A L L ++ V+H + + ++I+ L D
Sbjct: 179 QPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKD 238
Query: 393 QKLH 396
+
Sbjct: 239 GQSI 242
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 6e-29
Identities = 54/212 (25%), Positives = 81/212 (38%), Gaps = 41/212 (19%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-----------RRSQKLR 561
L + + G + +VGPNGAGKSTLL +AG ++ +G + L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 562 IGRYSQHFVDLLTMEETPVSYLLRL--HPDQEGLSKQEAVRAKLGKFGLPSHNHLT--PI 617
SQ PV + L L H E + G L +
Sbjct: 75 RAYLSQQQTPPFAT---PVWHYLTLHQHDKTR----TELLNDVAGALAL---DDKLGRST 124
Query: 618 AKLSGGQKARVVF-------TSISMSKPHILLLDEPTNHLDM---QSIDALADALDEFTG 667
+LSGG+ RV T + +LLLDEP N LD+ ++D + AL +
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL 184
Query: 668 GVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+V+ SHD R W+++ G +
Sbjct: 185 AIVMSSHDLNHTLRHAH-----RAWLLKGGKM 211
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 17/115 (14%)
Query: 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL-------FVQPTLLLLDEP 347
+ + L + GR T SGG R+ LA + LLLLDEP
Sbjct: 102 TRTELLNDVAGALA-LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP 160
Query: 348 TNHLDLR---AVLWLEEYLCRWKKTLVVVSHDRDFLN---TVCTEIIHLHDQKLH 396
N LD+ A+ + L + +V+ SHD LN L K+
Sbjct: 161 MNSLDVAQQSALDKILSALSQQGLAIVMSSHD---LNHTLRHAHRAWLLKGGKML 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
L S + G+ LVGPNG GKSTLL +A
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 28/207 (13%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
L + + F Y ++ ++ G +A++G NG GKSTLL+LL G P +G+
Sbjct: 3 KALSVENLGFYYQAENFL-FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 554 VRRSQKLRIGRYSQHFV--------DLLTMEETP-VSYLLRLHPDQEGLSKQEAVRAKLG 604
+ Q IG Q F D++ M + ++ + + L
Sbjct: 62 IEVYQ--SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY-----QVAMQALD 114
Query: 605 KFGLPSHNHLTPIAKLSGGQKARVVFTSISM---SKPHILLLDEPTNHLDMQS----IDA 657
L +H LSGGQ+ ++ I+ S+ ++LLDEPT+ LD+ + +
Sbjct: 115 YLNL-THLAKREFTSLSGGQRQLIL---IARAIASECKLILLDEPTSALDLANQDIVLSL 170
Query: 658 LADALDEFTGGVVLVSHDSRLISRVCD 684
L D VV +H + + +
Sbjct: 171 LIDLAQSQNMTVVFTTHQPNQVVAIAN 197
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 5e-21
Identities = 60/248 (24%), Positives = 92/248 (37%), Gaps = 59/248 (23%)
Query: 166 ITIDNFSVAARGKE-LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
++++N + + L + + ++ G ++G NG GKSTLL LL P+ I+V
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 225 L----LVEQEVVGDDRSAIQAVV----SAHEELVKLREEVASLQNSTSVDGEEDGDDAND 276
V Q ++ +V S H N+ + D A
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTH-------------INTFAKPKSHDYQVAMQ 111
Query: 277 AGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALF 336
A L L + R S SGG R I +ARA+
Sbjct: 112 A----------LDYLN-----------------LTHLAKREFTSLSGGQRQLILIARAIA 144
Query: 337 VQPTLLLLDEPTNHLDLR---AVLWLEEYLCRWK-KTLVVVSHDRDFLNTV---CTEIIH 389
+ L+LLDEPT+ LDL VL L L + + T+V +H N V + +
Sbjct: 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ---PNQVVAIANKTLL 201
Query: 390 LHDQKLHF 397
L+ Q F
Sbjct: 202 LNKQNFKF 209
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 37/236 (15%)
Query: 496 LQLIEVSFSYPNREDFK---LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
++++ VS + + L +V + I+ G + + G G+GKSTLL ++AG + PT G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 553 EVR---RSQKLRIGRY----------SQHFVDLLTMEETPVSY-LLRLHPDQEGLSKQEA 598
+V +K R Q F + + + V++ + +PD++
Sbjct: 63 DVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE--RVFDE-VAFAVKNFYPDRD---PVPL 116
Query: 599 VRAKLGKFGLPSHNHLT-PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDA 657
V+ + GL + LSGG+K RV S+ + +P IL+LDEP LD +
Sbjct: 117 VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176
Query: 658 LADALDEF-----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
L ++++ T V+L+SHD + D + V+E G F GT E
Sbjct: 177 LLRIVEKWKTLGKT--VILISHDIETVINHVD-----RVVVLEKGKKV-FDGTRME 224
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 59/236 (25%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE----VVGDDR 236
L++ S+ I+ G+ + G G GKSTLL+++ L+ G+
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIV-----------AGLIEPTSGDVLYDGER- 70
Query: 237 SAIQAVVSAHEELVKLREEVASL-QN------STSVDGEED---GDDANDAGEKLAELYE 286
++ ++R + Q + V ++
Sbjct: 71 ----------KKGYEIRRNIGIAFQYPEDQFFAERV--FDEVAFA--------------- 103
Query: 287 KLQILGSDAAEAQ-ASKILAGLGFTKE-MQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344
++ D K + +G + + R SGG + R+++A + +P +L+L
Sbjct: 104 -VKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILIL 162
Query: 345 DEPTNHLDLRAVLWLEEYLCRWK---KTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397
DEP LD L + +WK KT++++SHD + + ++ L K F
Sbjct: 163 DEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF 218
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 53/240 (22%)
Query: 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
+L++ E++++Y + L +++ I G AI+G NG GKSTL G L P+
Sbjct: 4 EDYILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62
Query: 552 GEVRRSQKLRIGRYSQHFVDLLTMEETPVS-YLLRLH-------PDQE------------ 591
G + D ++ + LR PD +
Sbjct: 63 GRIL--------------FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108
Query: 592 -----GLSKQEA---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643
L + E V L + G+ P LS GQK RV + + +P +L+L
Sbjct: 109 GAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167
Query: 644 DEPTNHLDMQSIDALADALDEFTGG----VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
DEPT LD + + L E +++ +HD ++ CD ++V++ G V
Sbjct: 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCD-----NVFVMKEGRV 222
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 48/232 (20%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
G LK ++ I G+ ++G NG+GKSTL + I P + +L + + +
Sbjct: 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFN--GILKPSSGRILFDNKPIDYSRK 77
Query: 237 SAIQAVVSAHEELVKLREEVAS-LQN------STSVDGEED---GDDANDAGEKLAELYE 286
++KLRE + Q+ S SV +D G
Sbjct: 78 G-----------IMKLRESIGIVFQDPDNQLFSASV--YQDVSFG--------------- 109
Query: 287 KLQILGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344
+ E + L G ++ +PT S G + R+++A L ++P +L+L
Sbjct: 110 -AVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167
Query: 345 DEPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTEIIHLHD 392
DEPT LD V + + L +K T+++ +HD D + C + + +
Sbjct: 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE 219
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 25/236 (10%)
Query: 495 LLQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
++QL V + + + L ++++ ++ G +V I+GPNG+GK+TLL ++G L P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSG 58
Query: 553 EVR---------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKL 603
+ R+ + + +T+ + V L +GL + L
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDI-VYLYEEL----KGLDRDL-FLEML 112
Query: 604 GKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALD 663
L + KLS GQ V + S+P I+ LDEP ++D ++ +
Sbjct: 113 KALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK 172
Query: 664 EFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE-YKEDLQREIK 718
E+ +LV+H+ +++ + G + P + E + + +
Sbjct: 173 EYGKEGILVTHELDMLNLYKE-----YKAYFLVGNRLQGPISVSELLESSIVEGER 223
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 19/178 (10%)
Query: 288 LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
++ G D ++L L +E+ R S G + + + AL QP ++ LDEP
Sbjct: 98 EELKGLD--RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEP 155
Query: 348 TNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
++D + Y+ + K ++V+H+ D + + K +F GN
Sbjct: 156 FENVDAARRHVISRYIKEYGKEGILVTHELD-------MLNLYKEYKAYFLVGN------ 202
Query: 408 GYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDE 465
R + E+ E + +R+ + + + + K A G ++
Sbjct: 203 ----RLQGPISVSELLESSIVEGERNDALLVLDIMDKKVSIVKGDLGMKFGALGSLNR 256
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 6e-21
Identities = 51/237 (21%), Positives = 86/237 (36%), Gaps = 47/237 (19%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------------RSQKL 560
L V + ++ G I+GPNG+GKSTL+N++ G L EG V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 561 RIGRYSQH---FVDL-----------LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF 606
I R Q ++ E S + +E ++A + L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI-LEFL 141
Query: 607 GLPSHNHLTPIAKLSGGQK-----ARVVFTSISMSKPHILLLDEPT---NHLDMQSIDAL 658
L SH + +LSGGQ R + M+ P ++++DEP I
Sbjct: 142 KL-SHLYDRKAGELSGGQMKLVEIGRAL-----MTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 659 ADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQR 715
L +++ H ++ D ++V+ NG + G EE +++
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYID-----HLYVMFNGQII-AEGRGEEEIKNVLS 246
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 7e-07
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT---NHL 351
+A KIL L + R SGG + + RAL P ++++DEP
Sbjct: 129 EMVEKAFKILEFLKLSHLYD-RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 352 DLRAVLWLEEYLCRWKK---TLVVVSHDRDFLNTVCTEII 388
+ ++ K T +++ H D + +
Sbjct: 188 LAHD---IFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 224
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 5e-20
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 22/184 (11%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR------RSQKLRIGRYS 566
L + + I+ G V GPNG GK+TLL ++ L P +GE+ K +I
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSGG 623
+ + +++E+ + + L+ G+ + + L + + +LS G
Sbjct: 85 EEIIVPRKISVEDY-LKAVASLY----GVKVNKNEIMDALESVEVLDLKK--KLGELSQG 137
Query: 624 QKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLIS 680
RV S + I +LD+P +D S + ++ E G V++ S +
Sbjct: 138 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE---EL 194
Query: 681 RVCD 684
CD
Sbjct: 195 SYCD 198
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 2e-09
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 16/118 (13%)
Query: 282 AELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
A LY G + + L + + S G R+ LA L V +
Sbjct: 103 ASLY------GVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEI 154
Query: 342 LLLDEPTNHLD--LRAVLW--LEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+LD+P +D + + + E L ++ + C +LH
Sbjct: 155 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS----YCDVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
K +L+ ++ I G GPNG+GK+TLLK ++
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----------RSQKLRI 562
L + I+ G ++GPNGAGK+T L +++ + P+ G V + I
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 563 GRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNHLTPI 617
+ + E LR S E V GL +
Sbjct: 91 SYLPEEAGAYRNMQGIE-----YLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRV 144
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSH 674
+ S G +++ M P + +LDEPT+ LD+ + + L + + +++ SH
Sbjct: 145 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
Query: 675 DSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQRE 716
+ + +CD I ++ NGT+ GT EE KE + +
Sbjct: 205 NMLEVEFLCD-----RIALIHNGTI-VETGTVEELKERYKAQ 240
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 35/222 (15%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLV----EQEVVGDDR 236
LK S I G+ +GL+GPNG GK+T L++++ L+ V G +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS-----------TLIKPSSGIVTVFGKN- 78
Query: 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAA 296
EE ++R+ ++ L G E L S
Sbjct: 79 --------VVEEPHEVRKLISYLPEEAGAYRNMQGI------EYL-RFVAGFYASSSSEI 123
Query: 297 EAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAV 356
E + G E ++S G ++ +ARAL V P L +LDEPT+ LD+
Sbjct: 124 EEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182
Query: 357 LWLEEY---LCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ + + T++V SH+ + +C I +H+ +
Sbjct: 183 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI 224
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 5e-19
Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 44/232 (18%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+L V F+Y + E L D+ + +A GP+G GKST+ +LL PT GE+
Sbjct: 1 MLSARHVDFAYDDSEQI-LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 555 R--------------RSQKLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQE 597
RSQ IG SQ T+ E ++Y L E L +
Sbjct: 60 TIDGQPIDNISLENWRSQ---IGFVSQDSAIMAG--TIREN-LTYGLEGDYTDEDL--WQ 111
Query: 598 AVR-AKLGKF--GLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHL 650
+ A F +P T + K+SGGQ+ R+ + P IL+LDE T L
Sbjct: 112 VLDLAFARSFVENMP-DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASL 170
Query: 651 DMQSIDALADALDEFTGG--VVLVSHDSRLISRVCD-DEERSEIWVVENGTV 699
D +S + ALD G ++++H RL S + D D +I+ +E G +
Sbjct: 171 DSESESMVQKALDSLMKGRTTLVIAH--RL-STIVDAD----KIYFIEKGQI 215
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 2e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SGG R R+++ARA P +L+LDE T LD
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLD 171
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 8e-19
Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 60/238 (25%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL-SPTEG 552
+L+ + E L + + + G V+I+G +G+GKSTLL +L G L +PTEG
Sbjct: 3 EILRAENIKKVIRGYE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEG 59
Query: 553 EVR-----------------RSQKLRIGRYSQHF--VDLLT-ME--ETPVSYLLRLHPDQ 590
+V R++K +G Q + LT +E P+ +
Sbjct: 60 KVFLEGKEVDYTNEKELSLLRNRK--LGFVFQFHYLIPELTALENVIVPMLKM------- 110
Query: 591 EGLSKQEAV-RAK--LGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS---MSKPHILLLD 644
G K+EA R + L + GL P +LSGG++ RV +I+ ++P +L D
Sbjct: 111 -GKPKKEAKERGEYLLSELGLGDKLSRKP-YELSGGEQQRV---AIARALANEPILLFAD 165
Query: 645 EPTNHLDMQS---IDALADALDEFTGGVVLVSHD-------SRLIS----RVCDDEER 688
EPT +LD + + + ++E +V+V+H+ R + +V + R
Sbjct: 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 9e-10
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 288 LQILGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
+ +G EA+ +L+ LG ++ +P + SGG + R+++ARAL +P LL D
Sbjct: 107 MLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYE-LSGGEQQRVAIARALANEPILLFAD 165
Query: 346 EPTNHLDLR---AVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392
EPT +LD V+ + + ++V+V+H+R+ L + + + D
Sbjct: 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LAELTHRTLEMKD 214
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 9e-19
Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 54/240 (22%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---- 555
+ FSYP+R++ + L +++ + G VA+VG +G GKST + L+ P +G V
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 556 ----------RSQKLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR-A 601
R IG SQ F T+ E + Y E ++AV+ A
Sbjct: 453 DIRTINVRYLREI---IGVVSQEPVLFAT--TIAEN-IRYGREDVTMDE---IEKAVKEA 503
Query: 602 KLGKF--GLPSHNHLTPI----AKLSGGQKARVVFTSIS---MSKPHILLLDEPTNHLDM 652
F LP H T + A+LSGGQK R+ +I+ + P ILLLDE T+ LD
Sbjct: 504 NAYDFIMKLP-HQFDTLVGERGAQLSGGQKQRI---AIARALVRNPKILLLDEATSALDT 559
Query: 653 QSIDALADALDEFTGG--VVLVSHDSRL--ISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
+S + ALD+ G ++++H RL + R D I + G + G +E
Sbjct: 560 ESEAVVQAALDKAREGRTTIVIAH--RLSTV-RNAD-----VIAGFDGGVIVEQ-GNHDE 610
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 445 RAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFS 504
+A +A+ + ++D P +V+F V F+
Sbjct: 996 KATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEG-NVQFS---------------GVVFN 1039
Query: 505 YPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
YP R L + + + G +A+VG +G GKST++ LL P G V
Sbjct: 1040 YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 9e-09
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 17/97 (17%)
Query: 618 AKLSGGQKARVVFTSIS---MSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLV 672
+LSGGQK R+ +I+ + +PHILLLDE T+ LD +S + +ALD+ G +++
Sbjct: 1170 TQLSGGQKQRI---AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVI 1226
Query: 673 SHDSRLIS-RVCDDEERSEIWVVENGTVSRFPGTFEE 708
+H RL + + D I V++NG V GT ++
Sbjct: 1227 AH--RLSTIQNAD-----LIVVIQNGKVKEH-GTHQQ 1255
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 9/68 (13%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLW-LEEYLCRWKKTLVVVSH 375
SGG + RI++ARAL QP +LLLDE T+ LD + V L++ R +T +V++H
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--AREGRTCIVIAH 1228
Query: 376 DRDFLNTV 383
R L+T+
Sbjct: 1229 -R--LSTI 1233
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDRDF 379
SGG + RI++ARAL P +LLLDE T+ LD + ++ L + ++ T +V++H
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHR--- 584
Query: 380 LNTV 383
L+TV
Sbjct: 585 LSTV 588
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 9e-19
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 58/233 (24%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
+ F Y L ++++ I G + IVG +G+GKSTL L+ P G+V
Sbjct: 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 72
Query: 556 ---------RSQKLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA-K 602
R Q +G Q ++ + +S G+S ++ + A K
Sbjct: 73 LALADPNWLRRQ---VGVVLQDNVLLNR--SIIDN-ISL------ANPGMSVEKVIYAAK 120
Query: 603 LG---KF--GLPSHNHLTPI----AKLSGGQKARVVFTSIS---MSKPHILLLDEPTNHL 650
L F L + T + A LSGGQ+ R+ +I+ ++ P IL+ DE T+ L
Sbjct: 121 LAGAHDFISELR-EGYNTIVGEQGAGLSGGQRQRI---AIARALVNNPKILIFDEATSAL 176
Query: 651 DMQSIDALADALDEFTGG--VVLVSHDSRLIS--RVCDDEERSEIWVVENGTV 699
D +S + + + G V++++H RL S + D I V+E G +
Sbjct: 177 DYESEHVIMRNMHKICKGRTVIIIAH--RL-STVKNAD-----RIIVMEKGKI 221
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 1e-05
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
DIT N F +L + ++ I G+ G+VG +G GKSTL KL+
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SGG R RI++ARAL P +L+ DE T+ LD
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALD 177
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 68/246 (27%), Positives = 105/246 (42%), Gaps = 44/246 (17%)
Query: 486 PEPTELTPPLLQL--IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL 543
+ +++L I F R L++V + + G ++G +GAGKSTL+ +
Sbjct: 15 GHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV 74
Query: 544 AGDLSPTEGEVR--------------RSQKLRIGRYSQHFVDLL---TMEETPVSYLLRL 586
PTEG V + +IG QHF +LL T+ V+ L L
Sbjct: 75 NLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF-NLLSSRTVFGN-VALPLEL 132
Query: 587 HPDQEGLSKQEA---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS---MSKPHI 640
+ K E V L GL + P + LSGGQK RV +I+ S P +
Sbjct: 133 ----DNTPKDEVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRV---AIARALASNPKV 184
Query: 641 LLLDEPTNHLDMQ---SI-DALADALDEFTGGVVLVSHDSRLISRVCDDE---ERSEIWV 693
LL D+ T+ LD SI + L D ++L++H+ ++ R+CD E+
Sbjct: 185 LLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL-- 242
Query: 694 VENGTV 699
+E TV
Sbjct: 243 IEQDTV 248
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 50/204 (24%)
Query: 166 ITIDN----FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221
I + N F R + L + S+ + G+ YG++G +G GKSTL++ + + P +
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 222 IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA------SLQNSTSVDG------EE 269
+ V G + + + EL K R ++ +L +S +V G E
Sbjct: 85 V-------LVDGQELTTLSE-----SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132
Query: 270 DGDDANDAGEKLAELYEKLQILG-SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMR 328
D ++ ++ EL L ++G D ++ S + SGG + R
Sbjct: 133 DNTPKDEVKRRVTEL---LSLVGLGDKHDSYPSNL------------------SGGQKQR 171
Query: 329 ISLARALFVQPTLLLLDEPTNHLD 352
+++ARAL P +LL D+ T+ LD
Sbjct: 172 VAIARALASNPKVLLCDQATSALD 195
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 1e-17
Identities = 78/244 (31%), Positives = 115/244 (47%), Gaps = 61/244 (25%)
Query: 495 LLQLIEVSFSYPN-REDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL-SPTE 551
+++L V+ +Y E L +V++ I G V+I+GP+G+GKST+LN++ G L PTE
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE 59
Query: 552 GEVR-----------------RSQKLRIGRYSQHF--VDLLT-ME--ETPVSYLLRLHPD 589
GEV R K IG Q F + LLT +E E P+ +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDK--IGFVFQQFNLIPLLTALENVELPLIF-----KY 112
Query: 590 QEGLSKQEAV-RAK--LGKFGLPS--HNHLTPIAKLSGGQKARVVFTSIS---MSKPHIL 641
+ +S +E RA L L NH P +LSGGQ+ RV +I+ + P I+
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHK-P-NQLSGGQQQRV---AIARALANNPPII 167
Query: 642 LLDEPTNHLDMQS---IDALADALDEFTGG-VVLVSHD-------SRLIS----RVCDDE 686
L D+PT LD ++ I L L+E G VV+V+HD R+I V +E
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
Query: 687 ERSE 690
+
Sbjct: 228 KLRG 231
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 284 LYEKLQILGSDAAEAQASKILAGLGFTKEMQG-RPTKSFSGGWRMRISLARALFVQPTLL 342
+++ + + +A + L + +P + SGG + R+++ARAL P ++
Sbjct: 109 IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-LSGGQQQRVAIARALANNPPII 167
Query: 343 LLDEPTNHLDLRA---VLWLEEYLCRWK-KTLVVVSHDRDFLNTVCTEIIHLHD 392
L D+PT LD + ++ L + L KT+VVV+HD + + II+L D
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKD 220
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-16
Identities = 56/193 (29%), Positives = 82/193 (42%), Gaps = 43/193 (22%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
V+F+Y +E LS V I G VA+VG +G+GKST+ NL G +
Sbjct: 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406
Query: 556 ---------RSQKLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR-AK 602
R SQ+ F D T+ ++Y +E + ++A R A
Sbjct: 407 VRDYKLTNLRRH---FALVSQNVHLFND--TIANN-IAYAAEGEYTREQI--EQAARQAH 458
Query: 603 LGKF--GLPSHNHLTPI----AKLSGGQK-----ARVVFTSISMSKPHILLLDEPTNHLD 651
+F +P T I LSGGQ+ AR + + +L+LDE T+ LD
Sbjct: 459 AMEFIENMP-QGLDTVIGENGTSLSGGQRQRVAIARAL-----LRDAPVLILDEATSALD 512
Query: 652 MQSIDALADALDE 664
+S A+ ALDE
Sbjct: 513 TESERAIQAALDE 525
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 154 EGQDDADANVKDITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
G+ +A+ ++ + + F+ + K L S I GK LVG +G GKST+ L
Sbjct: 330 NGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
SGG R R+++ARAL +L+LDE T+ LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 5e-16
Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 49/196 (25%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
V+F+YP RE L ++++ I G VA+VG +G+GKST+ +L+ EG +
Sbjct: 347 VTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406
Query: 556 ---------RSQKLRIGRYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQE----AV 599
R+Q + SQ+ F D T+ ++Y E S+++ A
Sbjct: 407 LREYTLASLRNQ---VALVSQNVHLFND--TVANN-IAY-----ARTEEYSREQIEEAAR 455
Query: 600 RAKLGKF--GLPSHNHLTPI----AKLSGGQK-----ARVVFTSISMSKPHILLLDEPTN 648
A F + + T I LSGGQ+ AR + + IL+LDE T+
Sbjct: 456 MAYAMDFINKMD-NGLDTIIGENGVLLSGGQRQRIAIARAL-----LRDSPILILDEATS 509
Query: 649 HLDMQSIDALADALDE 664
LD +S A+ ALDE
Sbjct: 510 ALDTESERAIQAALDE 525
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 154 EGQDDADANVKDITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
EG+ D D+ N F+ R L++ +++I GK LVG +G GKST+ L+
Sbjct: 330 EGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SGG R RI++ARAL +L+LDE T+ LD
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALD 512
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 35/163 (21%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSPTEGEV-----------RRSQ 558
L ++V I G V ++GP+G+GKST L NLL EGE+
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE---DFDEGEIIIDGINLKAKDTNLN 96
Query: 559 KLR--IGRYSQHFVDL---LTMEETPVSYLLRLHPDQ-EGLSKQEAV---RAKLGKFGLP 609
K+R +G Q F +L +T+ + L P + +++A L K GL
Sbjct: 97 KVREEVGMVFQRF-NLFPHMTVLNN-----ITLAPMKVRKWPREKAEAKAMELLDKVGLK 150
Query: 610 SHNHLTPIAKLSGGQKARVVFT-SISMSKPHILLLDEPTNHLD 651
H P LSGGQ RV +++M +P I+L DEPT+ LD
Sbjct: 151 DKAHAYP-DSLSGGQAQRVAIARALAM-EPKIMLFDEPTSALD 191
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 53/232 (22%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID--VLLVEQEVVGDDR 236
E+LK +V I G+ ++GP+G GKST L R + + ++ D ++++ +
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFL-----RCLNLLEDFDEGEIIIDGINLKAKD 92
Query: 237 SAIQAVVSAHEELVKLREEVA-------------SLQNSTSVDGEEDGDDANDAGEKLAE 283
+ + K+REEV L N T LA
Sbjct: 93 TNLN----------KVREEVGMVFQRFNLFPHMTVLNNIT-----------------LAP 125
Query: 284 LYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
+ K++ + AEA+A ++L +G + P S SGG R+++ARAL ++P ++L
Sbjct: 126 M--KVRKWPREKAEAKAMELLDKVGLKDKAHAYPD-SLSGGQAQRVAIARALAMEPKIML 182
Query: 344 LDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392
DEPT+ LD + VL + + L T+VVV+H+ F V ++ +
Sbjct: 183 FDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDG 234
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 50/209 (23%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
++++ +S + ++F L ++ + ++ G I+GP GAGK+ L L+AG P G +
Sbjct: 1 MIEIESLSRKW---KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 555 R---------RSQKLRIGRYSQ------HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV 599
+K I Q H + +++ + + +R+ + + + V
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPH----MNVKKN-LEFGMRM----KKIKDPKRV 108
Query: 600 RAKLGKFGLPSHNHLTPIAKLSGGQKARV------VFTSISMSKPHILLLDEPTNHLD-- 651
+ P LSGG++ RV V P ILLLDEP + LD
Sbjct: 109 LDTARDLKIEHLLDRNP-LTLSGGEQQRVALARALVT------NPKILLLDEPLSALDPR 161
Query: 652 ----MQS-IDALADALDEFTGGVVLVSHD 675
+ + L T V+ ++HD
Sbjct: 162 TQENAREMLSVLHKKNK-LT--VLHITHD 187
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLEEYLCRWKK- 368
+ R + SGG + R++LARAL P +LLLDEP + LD + L K
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM--LSVLHKK 176
Query: 369 ---TLVVVSHD 376
T++ ++HD
Sbjct: 177 NKLTVLHITHD 187
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 6e-13
Identities = 54/180 (30%), Positives = 75/180 (41%), Gaps = 57/180 (31%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLL---NLLAGDLSPTEGEVR-------------- 555
L V + G ++I+G +G+GKST L N L P+EG +
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNINLVRDKDG 78
Query: 556 ----------RSQKLRIGRYSQHFVDL---LT-ME---ETPVSYLLRLHPDQEGLSKQEA 598
R + R+ QHF +L +T +E E P+ L GLSK +A
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHF-NLWSHMTVLENVMEAPIQVL--------GLSKHDA 129
Query: 599 V---RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI----SMSKPHILLLDEPTNHLD 651
L K G+ LSGGQ+ RV SI +M +P +LL DEPT+ LD
Sbjct: 130 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRV---SIARALAM-EPDVLLFDEPTSALD 185
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 39/231 (16%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
E+LK S++ G ++G +G GKST L+ + + + P I +V + + R
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI---IVNGQNINLVRDK 76
Query: 239 IQAVVSAHE-ELVKLREEVA-------------SLQNSTSVDGEEDGDDANDAGEKLAEL 284
+ A + +L LR + L+N A +
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-----------------EAPI 119
Query: 285 YEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344
++ L A +A K LA +G + QG+ SGG + R+S+ARAL ++P +LL
Sbjct: 120 --QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF 177
Query: 345 DEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392
DEPT+ LD + VL + + L KT+VVV+H+ F V + +I LH
Sbjct: 178 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ 228
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 39/185 (21%)
Query: 516 VDVGIDMGTR-VAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKLRIGRY 565
++V +MG ++GP GAGKS L L+AG + P GEVR ++ IG
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 566 SQ------HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAK 619
Q H L++ ++Y LR E + VR K G+ P A+
Sbjct: 76 PQDYALFPH----LSVYRN-IAYGLRNVERVE---RDRRVREMAEKLGIAHLLDRKP-AR 126
Query: 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLD------MQS-IDALADALDEFTGGV--V 670
LSGG++ RV + +P +LLLDEP + +D + + + V +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-----DVPIL 181
Query: 671 LVSHD 675
V+HD
Sbjct: 182 HVTHD 186
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 288 LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
L+ + + + ++ LG + R SGG R R++LARAL +QP LLLLDEP
Sbjct: 95 LRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153
Query: 348 TNHLD--LRAVLWLEEYLCRWKK----TLVVVSHD 376
+ +D + VL E L ++ ++ V+HD
Sbjct: 154 LSAVDLKTKGVLMEE--LRFVQREFDVPILHVTHD 186
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 5e-11
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
V+ + L D++ I+ G +A+ G GAGK++LL ++ G+L P+EG+++
Sbjct: 11 NVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRW--KKTLVVVS 374
+ SGG R RISLARA++ L LLD P +LD+ + + E +C+ KT ++V+
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI--FESCVCKLMANKTRILVT 187
Query: 375 HDRDFLNTVCTEIIHLHDQKLHFYRGNFDDF 405
+ L +I+ LH+ +F G F +
Sbjct: 188 SKMEHLKK-ADKILILHEGSSYF-YGTFSEL 216
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 57/215 (26%), Positives = 87/215 (40%), Gaps = 52/215 (24%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
L + +S S+ N L+D+ + +D G + I+G +G GK+TLL LAG P GE
Sbjct: 3 AALHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 554 VR-------------RSQKLRIGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQE 597
+ ++ R+G Q V L LT+ ++Y L +
Sbjct: 61 ISLSGKTIFSKNTNLPVRERRLGYLVQEGV-LFPHLTVYRN-IAYGLG----NGKGRTAQ 114
Query: 598 A---VRAKLGKFGLPSHNHLTPIAKLSGGQKARV------VFTSISMSKPHILLLDEPTN 648
+ A L G+ P +LSGGQ+ R P ++LLDEP +
Sbjct: 115 ERQRIEAMLELTGISELAGRYP-HELSGGQQQRAALARALAP------DPELILLDEPFS 167
Query: 649 HLD------MQSIDALADALDEFTGGV--VLVSHD 675
LD ++ + + AL G V VSHD
Sbjct: 168 ALDEQLRRQIR--EDMIAALRAN--GKSAVFVSHD 198
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVL--WLEEYLCRWKKTLVVVSHDR 377
SGG + R +LARAL P L+LLDEP + LD LR + + L K+ V VSHDR
Sbjct: 140 SGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR 199
Query: 378 D 378
+
Sbjct: 200 E 200
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 7e-11
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
+F++ + L+ + I G VA+VG G GKS+LL+ L ++ EG V
Sbjct: 9 ATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLD-------LRAVLWLEEYLCRWKKTLVVVS 374
SGG + R+SLARA++ + L D+P + +D V+ + L KT ++V+
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK--NKTRILVT 186
Query: 375 HDRDFLNTVCTEIIHLHDQKLHFYRGNFDDF 405
H +L II + K+ G++ +
Sbjct: 187 HSMSYLPQ-VDVIIVMSGGKIS-EMGSYQEL 215
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 1e-10
Identities = 95/617 (15%), Positives = 182/617 (29%), Gaps = 127/617 (20%)
Query: 65 SYTDGIDLPPSDDEDDYALDEEIDAKKQLHRQ--QKDESKQLEISVTDKELKKREKKDML 122
Y D + S ED + + + + + + K+E + I D L
Sbjct: 17 QYKDIL----SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTL 71
Query: 123 AAHHAEQAKK---EALRDDHDAFTVVIGSR-------TSVLEGQDDADANVKDITIDNFS 172
+ E +K E LR ++ I + T + Q D N + ++
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYN 130
Query: 173 VAARGKEL--LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230
V+ R + L+ + + K + G G GK+ + L V +D +
Sbjct: 131 VS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKMD-----FK 183
Query: 231 V----VGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAEL-- 284
+ + + S + E L KL ++ S S + +L L
Sbjct: 184 IFWLNLKNCNSPETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 285 ---YEK-LQILG--SDAAEAQA----SKIL------------AGLGFTKEMQGRPTKSFS 322
YE L +L +A A KIL + T + + +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLW--LEEYLCRWKKTLVVVSHDRDFL 380
+ L + L +P L + T + +++ + + L W V + D L
Sbjct: 300 PDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---NCDKL 355
Query: 381 NTV---CTEIIHLHDQKLHFYR-GNFDD-------------FESGYEQRRKEMNK--KFE 421
T+ ++ + + F R F F+ +NK K+
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 422 IYEKQVKAAKRSGNRVQQEKVKDRAKSAA--AKEASKNKAKGKVDEDEPLPEAPKKWRDY 479
+ EKQ K + S + E A D D+ +P Y
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP---YLDQY 472
Query: 480 SVEF---HFP--EPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGA 534
H E E L +++ + F + + ++
Sbjct: 473 FYSHIGHHLKNIEHPERM-TLFRMVFLDFRF----------------LEQKIRHDSTAWN 515
Query: 535 GKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLR--------- 585
++LN L L + + + +Y + +L L+
Sbjct: 516 ASGSILNTL-QQLKFYKPYICDND----PKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 586 -LHPDQEGLSKQEAVRA 601
L + E + + EA +
Sbjct: 571 ALMAEDEAIFE-EAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 6e-09
Identities = 56/403 (13%), Positives = 115/403 (28%), Gaps = 112/403 (27%)
Query: 344 LDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTV-----CTEIIHLHDQKLHFY 398
+D T + L + + +D ++ II D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 399 RGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNK 458
R F S K+ E+ +K V+ R + +K + +
Sbjct: 66 R-LFWTLLS----------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT----- 109
Query: 459 AKGKVDEDEPLPEAPKKWRDYSVEFHFPEP-TELTPPLLQLIEVSFSYPNREDFKLSDVD 517
+ +++ + L + + Y+V +P +L LL+L
Sbjct: 110 -RMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLEL------------------- 147
Query: 518 VGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---LRIGRYSQHFVDLLT 574
V I G G+GK+ + + + + K L + + +L
Sbjct: 148 ---RPAKNVLIDGVLGSGKTWVALDVCLSYKV---QCKMDFKIFWLNLKNCNSP-ETVLE 200
Query: 575 MEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634
M + L D S H+ + S + R +
Sbjct: 201 MLQK-----LLYQIDPNWTS-------------RSDHSSNIKLRIHSIQAELRRLL---- 238
Query: 635 MSKPH---ILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSHDSRLISRVCDDEERS 689
SKP+ +L+L ++Q+ A A + F ++L + ++ + +
Sbjct: 239 KSKPYENCLLVLL------NVQN----AKAWNAFNLSCKILLTTRFKQVTDFL-SAATTT 287
Query: 690 EIWVVENGTVSRFPGTFEEYK-------------EDLQREIKA 719
I + + T + +DL RE+
Sbjct: 288 HISLDHH------SMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 60/492 (12%), Positives = 132/492 (26%), Gaps = 175/492 (35%)
Query: 53 SGKS-------KSKAVAKPSYTDGI---DLPPSDDEDDYALDEEIDAKKQLHRQQKDESK 102
SGK+ S V + I +L + + ++ ++L Q
Sbjct: 161 SGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPET-----VLEMLQKLLYQIDPNWT 214
Query: 103 QLEISVTDKELKKREKKDMLAAHHAEQAKKEALR--DD------HDAFTVVIGSRTSVLE 154
++ +L+ + L + + L + +AF + + +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--LSCKILLT- 271
Query: 155 GQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA-W 213
+ + +F AA + + H + + LL +
Sbjct: 272 --------TRFKQVTDFLSAATTTH------ISLDHHSM-------TLTPDEVKSLLLKY 310
Query: 214 RKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGE----- 268
L + + + R + ++++ +R+ +A+ N V+ +
Sbjct: 311 LDCRPQD-----LPREVLTTNPR-RL-SIIAE-----SIRDGLATWDNWKHVNCDKLTTI 358
Query: 269 -EDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWR- 326
E + + E +++++L + A I PT S W
Sbjct: 359 IESSLNVLEPAE-YRKMFDRLSVFPPSA------HI-------------PTILLSLIWFD 398
Query: 327 ------MRI-------SLARALFVQPTL----LLLD---EPTNHLDLRAVLWLEEY---- 362
M + SL + T+ + L+ + N L + ++ Y
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPK 457
Query: 363 -LCRWKKTLVVVS---------H------------------DRDFL-------NTVCTEI 387
+ H D FL +T
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 388 IHLHD--QKLHFYRGNFDDFESGYEQRRKE-------------------------MNKKF 420
+ + Q+L FY+ D + YE+ M +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 421 EIYEKQVKAAKR 432
I+E+ K +R
Sbjct: 578 AIFEEAHKQVQR 589
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
VSF Y + E L D+++ I+ G VA VG +G GKSTL+NL+ T G++
Sbjct: 345 VSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664
KLSGGQK R+ I ++ P IL+LDE T+ LD++S + +ALD
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 154 EGQDDADA----NVK-DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKST 206
+ ++ A + I ID+ F +LK ++ I G+ VG +G GKST
Sbjct: 323 DIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKST 382
Query: 207 LLKLL 211
L+ L+
Sbjct: 383 LINLI 387
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 478 DYSVEFHFPEPTELTPPLLQLIE---VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGA 534
+ + P + + V F Y D LS V+ + G+ VA++G G+
Sbjct: 321 NEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGS 380
Query: 535 GKSTLLNLLAGDLSPTEGEVR 555
GKSTL+NL+ + P G V
Sbjct: 381 GKSTLMNLIPRLIDPERGRVE 401
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 61/233 (26%)
Query: 145 VIGSRTSVLEGQDDADANVKDITID----NFSVAARGKELLKSTSVRISHGKRYGLVGPN 200
V+ + ++ E + + ++ F +L + + G ++G
Sbjct: 319 VLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGET 378
Query: 201 GMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA-SL 259
G GKSTL+ L+ P+ ID EV D ++ V +L LR ++
Sbjct: 379 GSGKSTLMNLI-------PRLIDPERGRVEVDELD---VRTV-----KLKDLRGHISAVP 423
Query: 260 QNST----SVD-----GEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT 310
Q + ++ G ED D E+ E +I AQ F
Sbjct: 424 QETVLFSGTIKENLKWGREDATDD--------EIVEAAKI-------AQIH------DFI 462
Query: 311 KEM---------QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
+ +G ++FSGG + R+S+ARAL +P +L+LD+ T+ +D
Sbjct: 463 ISLPEGYDSRVERG--GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 13/169 (7%)
Query: 228 EQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK 287
+E V + + +A+++L +L+ + + A K+ EL +
Sbjct: 152 AREKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASE 211
Query: 288 LQILGSDAAEAQAS----KILAGLGFTKEMQGRPTKSFSGGWRMRISLA------RALFV 337
+ ++ ++ + L E + RP SGG R+ + LA L
Sbjct: 212 IFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAG 271
Query: 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDRDFLNTV 383
+ +LL+LDEPT +LD L + R+ K +++VSHD + +
Sbjct: 272 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 8e-07
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 605 KFGLPSHNHLTPIAKLSGGQKARVVF-TSISMSK-----PHILLLDEPTNHLDMQSIDAL 658
+ + P+ LSGG++ + ++MS +L+LDEPT +LD + L
Sbjct: 234 RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 293
Query: 659 ADALDEFTGG---VVLVSHDSRLISRV 682
++ + V+LVSHD L
Sbjct: 294 ITIMERYLKKIPQVILVSHDEELKDAA 320
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 51/220 (23%)
Query: 487 EPTELTPPLLQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545
++ + V YP + + V I G V ++GP+G+GK+T+L L+AG
Sbjct: 6 HHHHHGSMTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63
Query: 546 DLSPTEGEVR---------RSQKLRIGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGL 593
PT+G+V QK +G Q++ L +T+ + VS+ LR + +
Sbjct: 64 LERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYA-LFQHMTVYDN-VSFGLRE----KRV 117
Query: 594 SKQEA---VRAKLGKFGLPSHNHLTPIAKLSGGQKARV------VFTSISMSKPHILLLD 644
K E VR L L S+ + P +LSGGQ+ RV +P +LL D
Sbjct: 118 PKDEMDARVRELLRFMRLESYANRFP-HELSGGQQQRVALARALAP------RPQVLLFD 170
Query: 645 EPTNHLD------MQS-IDALADALDEFTGGV--VLVSHD 675
EP +D +++ + + D + GV V V+HD
Sbjct: 171 EPFAAIDTQIRRELRTFVRQVHDEM-----GVTSVFVTHD 205
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVL--WLEEYLCRWK 367
R SGG + R++LARAL +P +LL DEP +D +R L ++ +
Sbjct: 137 SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG 196
Query: 368 KTLVVVSHD 376
T V V+HD
Sbjct: 197 VTSVFVTHD 205
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.5 bits (148), Expect = 2e-10
Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 61/192 (31%)
Query: 491 LTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT 550
++ +L++ + Y + +D+ + G V ++G NGAGK+T L+ +AG +
Sbjct: 2 VSDIVLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59
Query: 551 EGEVRRSQKLRIGRYSQH----------------FVDLLTMEETPVSYLLRL----HPDQ 590
+G++ + + I H F + LT+ E L + D+
Sbjct: 60 KGKIIFNGQ-DITNKPAHVINRMGIALVPEGRRIFPE-LTVYEN-----LMMGAYNRKDK 112
Query: 591 EGLSKQ-EAVRAKLGKFGLPSHNHLTPIAK---------LSGGQK-----ARVVFTSISM 635
EG+ + E + F P K LSGG++ R + M
Sbjct: 113 EGIKRDLEWI---FSLF---------PRLKERLKQLGGTLSGGEQQMLAIGRAL-----M 155
Query: 636 SKPHILLLDEPT 647
S+P +L++DEP+
Sbjct: 156 SRPKLLMMDEPS 167
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-10
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 279 EKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLA------ 332
E +E++ + +A + L E + RP SGG R+ + LA
Sbjct: 16 ELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMS 75
Query: 333 RALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDRDFLNT 382
L + +LL+LDEPT +LD L + R+ K +++VSHD + +
Sbjct: 76 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA 128
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 616 PIAKLSGGQKARVVFTS------ISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG- 668
P+ LSGG++ + + +L+LDEPT +LD + L ++ +
Sbjct: 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113
Query: 669 --VVLVSHDSRLI 679
V+LVSHD L
Sbjct: 114 PQVILVSHDEELK 126
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 4e-10
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 496 LQLIEVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
++ +VSF+YPN + + L + + G A+VGPNG+GKST+ LL PT G+V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 555 R 555
Sbjct: 77 L 77
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 618 AKLSGGQKARVVFTSIS---MSKPHILLLDEPTNHLDMQSIDALADALDEFTGG----VV 670
+LSGGQ+ V +++ + KP +L+LD T+ LD + + L E V+
Sbjct: 155 NQLSGGQRQAV---ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 671 LVSHDSRL--ISRVCDDEERSEIWVVENGTV 699
L++ +L I ++ G+V
Sbjct: 212 LITQ--QLSLA-ERAH-----HILFLKEGSV 234
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 9e-05
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAV-LWLEEYLCRWKKTLVVVSH 375
SGG R ++LARAL +P LL+LD T+ LD V L E +T+++++
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL 543
V+FSYP + + + L ++ I GT A+VG G+GKST+ LL
Sbjct: 23 VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 619 KLSGGQKARVVFTSIS---MSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVS 673
KLSGG++ R+ +I+ + P I++ DE T+ LD ++ A+++ +++++
Sbjct: 155 KLSGGERQRI---AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA 211
Query: 674 HDSRLISRVCDDEERSEIWVVENGTV 699
H RL S + E I ++ G +
Sbjct: 212 H--RL-STISSAE---SIILLNKGKI 231
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSHDRD 378
SGG R RI++AR L P +++ DE T+ LD E L + +TL++++H R
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAH-R- 213
Query: 379 FLNTV--CTEIIHLHD 392
L+T+ II L+
Sbjct: 214 -LSTISSAESIILLNK 228
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 165 DITIDN--FSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
+I + FS + LKS + I G LVG G GKST+ KLL
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 476 WRDYSVEFHFPEPTELTPPLLQLIEVSFSYPN---REDFKLSDVDVGIDMGTRVAIVGPN 532
W + E + S S+ N L D++ I+ G +A+ G
Sbjct: 14 WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGST 73
Query: 533 GAGKSTLLNLLAGDLSPTEGEVR 555
GAGK++LL ++ G+L P+EG+++
Sbjct: 74 GAGKTSLLMMIMGELEPSEGKIK 96
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLR-AVLWLEEYLCRW--KKTLVVVSHDRD 378
SGG R RISLARA++ L LLD P +LD+ E +C+ KT ++V+ +
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 379 FLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQ 438
L +I+ LH+ +F G F + + R + + K + + + N +
Sbjct: 221 HLKK-ADKILILHEGSSYF-YGTFSEL----QNLRPDFSSKLMGCDSFDQFSAERRNSIL 274
Query: 439 QEKVKDRAKSAAA 451
E + + A
Sbjct: 275 TETLHRFSLEGDA 287
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
V FSY + + L DV + G +A+VGP+GAGKST+L LL + G +R
Sbjct: 59 VHFSYADGRET-LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR 112
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSHDS 676
KLSGG+K RV + P I+LLDE T+ LD + A+ +L + ++V+H
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH-- 247
Query: 677 RLISRVCD-DEERSEIWVVENGTV 699
RL S V + D +I V+++G +
Sbjct: 248 RL-STVVNAD----QILVIKDGCI 266
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 9/76 (11%)
Query: 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSHDRD 378
SGG + R+++AR + P ++LLDE T+ LD RA+ +C +T +VV+H R
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAH-R- 248
Query: 379 FLNTV--CTEIIHLHD 392
L+TV +I+ + D
Sbjct: 249 -LSTVVNADQILVIKD 263
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 9e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
G+E L+ S + G+ LVGP+G GKST+L+LL
Sbjct: 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL 543
V FSY +++ L D+ I G +VA+VGP G+GK+T++NLL
Sbjct: 360 VWFSY-DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 39/182 (21%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
+ + VS + + L +V++ I+ G R I+GP+GAGK+T + ++AG P+ GE
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE-- 61
Query: 556 RSQKLRIGRYSQHFVDLLTMEETP-----------------------VSYLLRLHPDQEG 592
L + + P +++ L
Sbjct: 62 ----LYFD--DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN----MK 111
Query: 593 LSKQE---AVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH 649
+SK+E V + + P +LSG Q+ RV + P +LLLDEP ++
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 650 LD 651
LD
Sbjct: 171 LD 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 299 QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAV 356
+ +KIL + + + SG + R++LARAL P+LLLLDEP ++LD +R
Sbjct: 123 EVAKIL-DIH---HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 357 LWLE--EYLCRWKKTLVVVSHD 376
E R TL+VVSHD
Sbjct: 179 ARALVKEVQSRLGVTLLVVSHD 200
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 52/210 (24%), Positives = 81/210 (38%), Gaps = 63/210 (30%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVRRSQKLRIGRYSQHFV 570
L + + + G AI+GPNG+GKSTL LAG D T G V K
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK----------- 84
Query: 571 DLLTME-----------------ETP---VSYLLRL-------HPDQEGLSKQE---AVR 600
DLL + E P + L+ + QE L + + +
Sbjct: 85 DLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLME 144
Query: 601 AKLGKFGLPSHNHLTPIAK------LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 654
K+ +P + SGG+K R +++ +P + +LDE + LD
Sbjct: 145 EKIALLKMPED-----LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD--- 196
Query: 655 IDAL---ADALDEFTG---GVVLVSHDSRL 678
IDAL AD ++ ++V+H R+
Sbjct: 197 IDALKVVADGVNSLRDGKRSFIIVTHYQRI 226
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
I + V+ K +L+ S+ + G+ + ++GPNG GKSTL LA
Sbjct: 23 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLA 67
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 487 EPTELTPPL-------LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTL 539
E + + + + +++ Y + L ++ I G RV ++G G+GKSTL
Sbjct: 4 ENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTL 63
Query: 540 LNLLAGDLSPTEGEV 554
L+ L TEGE+
Sbjct: 64 LSAFLR-LLNTEGEI 77
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 59/206 (28%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVRRSQKLRIGRYSQHFV 570
L V++ + G A++GPNGAGKSTL +LAG + + GE+ +
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE----------- 67
Query: 571 DLLTME-----------------ETP---VSYLLRL------HPDQEGLSKQEAVRAKLG 604
++L + E P ++ LRL + V+ L
Sbjct: 68 NILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE 127
Query: 605 KFGLPSHNHLTPIAK------LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
SGG+K R + + +P +LDE + LD IDAL
Sbjct: 128 LLDWDES-----YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD---IDAL 179
Query: 659 ---ADALDEFTG---GVVLVSHDSRL 678
A ++ G G ++++H R+
Sbjct: 180 KVVARGVNAMRGPNFGALVITHYQRI 205
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
I + + G+ +LK ++ + G+ + L+GPNG GKSTL K+LA
Sbjct: 6 IRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILA 50
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
++L + + N L+++++ I G +A++GP+G+GKSTLL +AG PT G++
Sbjct: 4 IKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
++L++V + + ++ + + G + ++GP+G GK+T L ++AG P+ G++
Sbjct: 4 VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
++L ++ + N ++ +++ I G + ++GP+G GK+T L ++AG PTEG +
Sbjct: 12 VKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 10/166 (6%)
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA 282
L ++E + + + E+L K E + ++ +G +
Sbjct: 184 GELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQK 243
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL------- 335
L E + + +K + + SGG ++ ++L+ L
Sbjct: 244 YLNEAFSEFDLPYSFVELTKDFE-VRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALI 302
Query: 336 FVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKT--LVVVSHDRDF 379
+ ++LDEPT +LD L E + K +++++H R+
Sbjct: 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
+ V + G VA++GP+G GK+T L +LAG PT GE+
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 22/178 (12%), Positives = 50/178 (28%), Gaps = 27/178 (15%)
Query: 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEG-----EVRRSQKLRIGRYSQHFVDLLTMEETP 579
++ I G G GK+TL+ + L EVR + + R + ++
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIF 59
Query: 580 VSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639
S +G +G+ + + +
Sbjct: 60 SSKFFTSKK-------------LVGSYGV-----NVQYFEELAIPILERAYREAKKDRRK 101
Query: 640 ILLLDE--PTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVE 695
++++DE + D + + + VV + V + ++E
Sbjct: 102 VIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIE 159
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
+QL V+ ++ K D+++ I G V VGP+G GKSTLL ++AG + T G++
Sbjct: 4 VQLQNVTKAWGEVVVSK--DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 527 AIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564
G +G GKS+LLN ++ +L E+ S+ L G+
Sbjct: 177 VFAGQSGVGKSSLLNAISPELGLRTNEI--SEHLGRGK 212
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 527 AIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564
+ G +G GKS+LLN + L EV S+KL+ GR
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVSEV--SEKLQRGR 208
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 523 GTRVAIVG-PNGAGKSTLLNLLAGD 546
G +V I G PN AGKS+LLN LAG
Sbjct: 4 GMKVVIAGRPN-AGKSSLLNALAGR 27
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 523 GTRVAIVG-PNGAGKSTLLNLLAGD 546
G +VAIVG PN GKS+LLN +
Sbjct: 224 GLKVAIVGRPN-VGKSSLLNAWSQS 247
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 523 GTRVAIVG-PNGAGKSTLLNLLAGD 546
G I G PN AGKSTLLN L G
Sbjct: 233 GVSTVIAGKPN-AGKSTLLNTLLGQ 256
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 723 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.98 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.94 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.94 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.94 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.92 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.88 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.88 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.87 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.85 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.85 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.84 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.84 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.81 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.8 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.8 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.79 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.78 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.77 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.77 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.77 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.77 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.77 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.76 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.76 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.76 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.76 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.76 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.75 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.75 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.75 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.74 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.74 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.74 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.73 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.73 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.73 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.72 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.72 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.72 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.72 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.71 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.7 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.7 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.7 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.7 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.69 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.68 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.68 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.67 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.67 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.65 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.65 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.65 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.63 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.63 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.62 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.61 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.6 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.6 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.59 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.57 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.57 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.57 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.56 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.56 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.55 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.54 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.54 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.54 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.53 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.53 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.51 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.5 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.49 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.48 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.48 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.46 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.46 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.46 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.45 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.43 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.4 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.39 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.37 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.37 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.35 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.34 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.34 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.31 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.3 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.3 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.27 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.27 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.26 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.26 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.23 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.22 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.22 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.22 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.22 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.22 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.16 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.16 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.16 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.15 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.15 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.14 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.12 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.11 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.11 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.1 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.09 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.09 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.09 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.08 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.07 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.05 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.05 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.05 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.03 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.03 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.02 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.0 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.0 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.0 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.99 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.99 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.94 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.93 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.92 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.91 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.9 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.88 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.88 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.86 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.85 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.85 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.84 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.84 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.82 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.82 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.82 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.81 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.78 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.77 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.76 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.74 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.71 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.71 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.69 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.65 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.64 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.64 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.64 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.6 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.58 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.58 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.56 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.53 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.52 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.52 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.51 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.51 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.48 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.47 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.45 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.42 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.4 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.39 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.38 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.36 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.36 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.36 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.32 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.32 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.31 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.27 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.27 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.26 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.26 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.23 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.23 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.22 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.2 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.19 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.18 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.18 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.16 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.13 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.13 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.09 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.09 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.09 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.06 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.05 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.05 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.04 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.04 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.02 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.01 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.01 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.98 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.97 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.97 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.97 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.96 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.95 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.93 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.89 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.89 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.86 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.85 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.84 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.81 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.79 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.79 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.78 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.73 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.73 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.72 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.71 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.71 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.7 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.7 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.7 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.69 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 97.69 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.68 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.67 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.67 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.67 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.67 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.67 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.66 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.65 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.63 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.62 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.6 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.58 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.58 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.58 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.55 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.54 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.53 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.53 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.52 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.51 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 97.5 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.49 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.49 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.48 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.47 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.46 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.45 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.45 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.44 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.42 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.42 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.4 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.4 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.4 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.4 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.39 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.39 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.37 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.37 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.35 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.34 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.31 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.28 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.26 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.25 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.25 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.25 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.24 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.22 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.15 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.14 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.11 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.09 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.03 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.01 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.01 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.01 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.99 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.97 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.92 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.87 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.86 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.83 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.81 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.8 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.79 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.76 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.75 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.73 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.71 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.71 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.71 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.71 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.7 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.7 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.68 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.67 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.66 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.66 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.64 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.63 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.62 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.61 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.6 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.6 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.56 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.56 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.52 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.51 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.51 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.46 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.42 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.41 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.4 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.39 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.38 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.37 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.35 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.35 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.34 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.31 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.28 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.27 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.24 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.23 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.21 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.2 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.17 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.16 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.15 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.14 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.06 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.03 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.03 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.02 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.01 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.99 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.99 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.98 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.96 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.89 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.88 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.86 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.82 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.82 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.82 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.77 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.75 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.74 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.73 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.69 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.68 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.68 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.67 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.64 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.64 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.61 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.61 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.61 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.6 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.58 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.58 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.54 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.54 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.51 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.5 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.5 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.49 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.47 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.47 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.47 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.46 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.44 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.43 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-74 Score=690.82 Aligned_cols=428 Identities=36% Similarity=0.654 Sum_probs=321.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC---CCCCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI---PVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~---~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.|...|++++|+++++|+|+||+|.+|++++|+||||||||||||+|+|... +.+....+.|+.|+.....
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~------ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTH------ 508 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCC------
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccc------
Confidence 4777799999999999999999999999999999999999999999996311 1111112233332210000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
....+.+.+.. ...+. ..++.++|+.+||.....++++.+|
T Consensus 509 -------------------------------~~ltv~e~l~~-----~~~~~---~~~v~~~L~~lgL~~~~~~~~~~~L 549 (986)
T 2iw3_A 509 -------------------------------SDTSVLDFVFE-----SGVGT---KEAIKDKLIEFGFTDEMIAMPISAL 549 (986)
T ss_dssp -------------------------------TTSBHHHHHHT-----TCSSC---HHHHHHHHHHTTCCHHHHHSBGGGC
T ss_pred -------------------------------cCCcHHHHHHH-----hhcCH---HHHHHHHHHHcCCChhhhcCCcccC
Confidence 00011111110 00111 4568889999999644557999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
||||||||+|||||+.+|+||||||||||||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|+++.+.|+
T Consensus 550 SGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~ 629 (986)
T 2iw3_A 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGN 629 (986)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCC
Confidence 99999999999999999999999999999999999999999988778999999999999999999999999999767788
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccccce
Q 048654 402 FDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSV 481 (723)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (723)
++++...... .. ....+.. ...
T Consensus 630 ~~e~~~~~~~------------------~~---------------------------~~~~l~~-------------~~~ 651 (986)
T 2iw3_A 630 FTEFVKKCPA------------------AK---------------------------AYEELSN-------------TDL 651 (986)
T ss_dssp HHHHHHHCGG------------------GG---------------------------GSSSTTT-------------CCC
T ss_pred HHHHHhhhHH------------------HH---------------------------HHHhhhh-------------hhh
Confidence 8766321000 00 0000000 000
Q ss_pred eeecCCC------CCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEE
Q 048654 482 EFHFPEP------TELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555 (723)
Q Consensus 482 ~~~~~~~------~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~ 555 (723)
.+.+|.+ ...++++|+++|++|+|++...++|+||||+|.+|++++|+||||||||||+|+|+|+++|++|+|+
T Consensus 652 ~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 652 EFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp CCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred hccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 0111111 0123579999999999975334689999999999999999999999999999999999999999999
Q ss_pred ECCceeEEEEcccccccc--CccccHHHHHHhh-----------------------------------------------
Q 048654 556 RSQKLRIGRYSQHFVDLL--TMEETPVSYLLRL----------------------------------------------- 586 (723)
Q Consensus 556 ~~~~~~ig~~~q~~~~~~--~~~~~~~~~~~~~----------------------------------------------- 586 (723)
+++..+++|++|+....+ ....++..++...
T Consensus 732 ~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~ 811 (986)
T 2iw3_A 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKF 811 (986)
T ss_dssp ECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEE
T ss_pred EcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhh
Confidence 988778999998642100 0000111100000
Q ss_pred ---------------------------------------------------------CCCCCCCcHHHHHHHHHHhCCCC
Q 048654 587 ---------------------------------------------------------HPDQEGLSKQEAVRAKLGKFGLP 609 (723)
Q Consensus 587 ---------------------------------------------------------~~~~~~~~~~~~~~~~L~~~gl~ 609 (723)
.... .......++++|+.|||.
T Consensus 812 ~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~-~~~~~~~i~~~Le~lGL~ 890 (986)
T 2iw3_A 812 KNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQF-RPLTRKEIEEHCSMLGLD 890 (986)
T ss_dssp TTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCC-CCCCHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhccc-chhHHHHHHHHHHHcCCC
Confidence 0000 001235578899999997
Q ss_pred CCC-CcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCC
Q 048654 610 SHN-HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEER 688 (723)
Q Consensus 610 ~~~-~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~ 688 (723)
... .++++.+|||||||||+|||||+.+|+||||||||+|||+.+...|.+.|+++++|||+||||++++..+||
T Consensus 891 ~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~D---- 966 (986)
T 2iw3_A 891 PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTE---- 966 (986)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCC----
T ss_pred chhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCC----
Confidence 432 346789999999999999999999999999999999999999999999999998999999999999999995
Q ss_pred cEEEEEECCeEEe
Q 048654 689 SEIWVVENGTVSR 701 (723)
Q Consensus 689 drv~vl~~G~i~~ 701 (723)
+||+|++|+|+.
T Consensus 967 -rVivL~~G~Iv~ 978 (986)
T 2iw3_A 967 -EVWAVKDGRMTP 978 (986)
T ss_dssp -EEECCBTTBCCC
T ss_pred -EEEEEECCEEEE
Confidence 999999999974
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-72 Score=643.72 Aligned_cols=454 Identities=24% Similarity=0.302 Sum_probs=308.7
Q ss_pred EE-EeEEEEeCCe-eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 167 TI-DNFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 167 ~l-~nls~~y~~~-~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
++ +||+++|+++ .+|+++| +|.+||++||+||||||||||||+|+|+..|..|... . .. ......+.+
T Consensus 22 ~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~-----~---~~-~~~~~~~~g 91 (538)
T 1yqt_A 22 QLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDN-----D---SW-DGVIRAFRG 91 (538)
T ss_dssp --CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTC-----C---SH-HHHHHHTTT
T ss_pred hHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccC-----c---ch-hhhHHhhCC
Confidence 44 5899999887 5999999 9999999999999999999999999998776655410 0 00 000000000
Q ss_pred hhHHHHHHHHHHHhhhcCcC-CCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 245 AHEELVKLREEVASLQNSTS-VDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
.. .......... ..... ................+.+.... ....+++.++|+.+||.. ..++++.+|||
T Consensus 92 ~~--~~~~~~~~~~-~~~~~~~~~q~~~~~~~~~~~~v~e~~~~------~~~~~~~~~~l~~lgl~~-~~~~~~~~LSg 161 (538)
T 1yqt_A 92 NE--LQNYFEKLKN-GEIRPVVKPQYVDLIPKAVKGKVIELLKK------ADETGKLEEVVKALELEN-VLEREIQHLSG 161 (538)
T ss_dssp ST--HHHHHHHHHT-TSCCCEEECSCGGGSGGGCCSBHHHHHHH------HCSSSCHHHHHHHTTCTT-TTTSBGGGCCH
T ss_pred cc--HHHHHHHHHH-HhhhhhhhhhhhhhcchhhhccHHHHHhh------hhHHHHHHHHHHHcCCCh-hhhCChhhCCH
Confidence 00 0000000000 00000 00000000000000001111110 011246788999999974 46899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE--Ee
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH--FY 398 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~--~~ 398 (723)
||||||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|... .+
T Consensus 162 GekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~ 241 (538)
T 1yqt_A 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIF 241 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccc
Confidence 9999999999999999999999999999999999999988765 789999999999999999999999854211 11
Q ss_pred cCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccc
Q 048654 399 RGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRD 478 (723)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (723)
..++..- ..+.. ... +.. ........ .
T Consensus 242 ~~~~~~~--------~~~~~----------~~~--~~~--------------------~~~~~~~~-------------~ 268 (538)
T 1yqt_A 242 SQPKGTR--------NGINE----------FLR--GYL--------------------KDENVRFR-------------P 268 (538)
T ss_dssp CCCEEHH--------HHHHH----------HHH--TEE--------------------TTTTEECS-------------S
T ss_pred cchhhHH--------HHHHH----------Hhh--hcc--------------------chhhhccc-------------c
Confidence 1221110 00000 000 000 00000000 0
Q ss_pred cceeeecCCCC--CCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 479 YSVEFHFPEPT--ELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 479 ~~~~~~~~~~~--~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
....+.++.+. ....++++++|+++.|++ ..|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 345 (538)
T 1yqt_A 269 YEIKFTKTGERVEIERETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345 (538)
T ss_dssp SCCCCCCSSGGGSSCCCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC
T ss_pred cccccccCCcccccCCCeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 00001111111 123578999999999974 3689999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEccccccc--cCccccHHHHH-HhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 557 SQKLRIGRYSQHFVDL--LTMEETPVSYL-LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 557 ~~~~~ig~~~q~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
...++|++|+.... +++.++. ... ...+. ..+.++++|+.|++.. ...+++.+|||||||||+||||
T Consensus 346 --~~~i~~v~Q~~~~~~~~tv~~~~-~~~~~~~~~------~~~~~~~~l~~~~l~~-~~~~~~~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 346 --DLTVAYKPQYIKADYEGTVYELL-SKIDASKLN------SNFYKTELLKPLGIID-LYDREVNELSGGELQRVAIAAT 415 (538)
T ss_dssp --CCCEEEECSSCCCCCSSBHHHHH-HHHHHHHHT------CHHHHHHTTTTTTCGG-GTTSBGGGCCHHHHHHHHHHHH
T ss_pred --CceEEEEecCCcCCCCCcHHHHH-HhhhccCCC------HHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHH
Confidence 34699999975322 2232211 111 00111 2356788999999974 4457889999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC--CeEEecCCCHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN--GTVSRFPGTFE 707 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~--G~i~~~~g~~~ 707 (723)
|+.+|+||||||||+|||+.++..|.++|+++ +.|||+||||++++..+|| ||++|++ |++. ..|+++
T Consensus 416 L~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d-----rv~vl~~~~~~~~-~~g~~~ 489 (538)
T 1yqt_A 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD-----RLMVFEGEPGKYG-RALPPM 489 (538)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS-----EEEEEEEETTTEE-EECCCE
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEeCCcceEe-ecCCHH
Confidence 99999999999999999999999999999875 5699999999999999995 9999986 6775 357877
Q ss_pred HHHHH
Q 048654 708 EYKED 712 (723)
Q Consensus 708 ~~~~~ 712 (723)
++...
T Consensus 490 ~~~~~ 494 (538)
T 1yqt_A 490 GMREG 494 (538)
T ss_dssp EHHHH
T ss_pred HHHhh
Confidence 76543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-71 Score=644.59 Aligned_cols=457 Identities=25% Similarity=0.307 Sum_probs=312.7
Q ss_pred ceEE--------EeEEEEeCCe-eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC
Q 048654 165 DITI--------DNFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD 235 (723)
Q Consensus 165 ~I~l--------~nls~~y~~~-~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~ 235 (723)
.|++ +||+++|+++ .+|+++| +|++|+++||+|||||||||||++|+|+..|..|... ...
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~--------~~~- 152 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDN--------DSW- 152 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTC--------CCH-
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccc--------ccc-
Confidence 5888 8999999887 5999999 9999999999999999999999999998877655410 000
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCc-hhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc
Q 048654 236 RSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDD-ANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
......+.+.. .......... .............. .......+ .+.+... ....++.++|+.+||.. ..
T Consensus 153 ~~~~~~~~G~~--~~~~~~~~~~-~~~~i~~~~q~~~~~~~~~~~tv---~e~l~~~---~~~~~~~~~L~~lgL~~-~~ 222 (607)
T 3bk7_A 153 DNVIRAFRGNE--LQNYFERLKN-GEIRPVVKPQYVDLLPKAVKGKV---RELLKKV---DEVGKFEEVVKELELEN-VL 222 (607)
T ss_dssp HHHHHHTTTST--HHHHHHHHHH-TSCCCEEECSCGGGGGGTCCSBH---HHHHHHT---CCSSCHHHHHHHTTCTT-GG
T ss_pred chhhheeCCEe--hhhhhhhhhh-hhcceEEeechhhhchhhccccH---HHHhhhh---HHHHHHHHHHHHcCCCc-hh
Confidence 00000000000 0000000000 00000000000000 00000001 1111110 11245788999999974 56
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+
T Consensus 223 ~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp GSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEEC
Confidence 8999999999999999999999999999999999999999999999988865 7899999999999999999999998
Q ss_pred CCEEE--EecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCC
Q 048654 392 DQKLH--FYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPL 469 (723)
Q Consensus 392 ~G~i~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (723)
++... .+..++..- ..+.. + .. +.. . .....
T Consensus 303 ~~~~~~g~~~~~~~~~--------~~i~~----~------~~--~~~---------------------~-~~~~~----- 335 (607)
T 3bk7_A 303 GEPGVYGIFSKPKGTR--------NGINE----F------LQ--GYL---------------------K-DENVR----- 335 (607)
T ss_dssp SCTTTEEEECCCEEHH--------HHHHH----H------HH--TEE---------------------T-TTTEE-----
T ss_pred CCccccceeccchhHH--------HHHHH----H------Hh--hcc---------------------h-hhhhh-----
Confidence 65321 011111100 00000 0 00 000 0 00000
Q ss_pred CCCCccccccceeeecCCCC--CCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 470 PEAPKKWRDYSVEFHFPEPT--ELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.+.....+.++.+. ....++++++|+++.|++ ..|+++||+|.+||+++|+|||||||||||++|+|++
T Consensus 336 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 336 ------FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ------CCSSCCCCCCSTTSCCCCCCEEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ------ccccccccccCCCcccccCceEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 00000011111111 123568999999999975 3689999999999999999999999999999999999
Q ss_pred CCCcceEEECCceeEEEEcccccc--ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHH
Q 048654 548 SPTEGEVRRSQKLRIGRYSQHFVD--LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQK 625 (723)
Q Consensus 548 ~p~~G~I~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqk 625 (723)
+|++|+|.+ ...++|++|+... .+++.++........+ ...+.+.++|+.+||... .++++.+||||||
T Consensus 407 ~p~~G~I~~--~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~------~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGe~ 477 (607)
T 3bk7_A 407 EPTEGKVEW--DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL------NSNFYKTELLKPLGIIDL-YDRNVEDLSGGEL 477 (607)
T ss_dssp CCSBSCCCC--CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH------HCHHHHHHTHHHHTCTTT-TTSBGGGCCHHHH
T ss_pred CCCceEEEE--eeEEEEEecCccCCCCCcHHHHHHhhhccCC------CHHHHHHHHHHHcCCchH-hcCChhhCCHHHH
Confidence 999999986 3469999997532 2233222111000000 013457889999999754 4578899999999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC--CeE
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN--GTV 699 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~--G~i 699 (723)
|||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++ |.+
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ad-----rv~vl~~~~g~~ 552 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD-----RLIVFEGEPGRH 552 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS-----EEEEEEEETTTE
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEcCCcceE
Confidence 9999999999999999999999999999999999999876 4699999999999999995 9999986 776
Q ss_pred EecCCCHHHHHHH
Q 048654 700 SRFPGTFEEYKED 712 (723)
Q Consensus 700 ~~~~g~~~~~~~~ 712 (723)
. ..|+++++...
T Consensus 553 ~-~~g~p~~~~~~ 564 (607)
T 3bk7_A 553 G-RALPPMGMREG 564 (607)
T ss_dssp E-EECCCEEHHHH
T ss_pred E-ecCCHHHHHhh
Confidence 5 35788776653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-67 Score=610.27 Aligned_cols=463 Identities=20% Similarity=0.263 Sum_probs=302.9
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHH
Q 048654 170 NFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEE 248 (723)
Q Consensus 170 nls~~y~~~-~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 248 (723)
|++++|+.. ..|++++ ++.+|+++||+||||||||||||+|+|+..|..|.+. . ..........+.. ..
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~--~------~~~~~~~~~~~~g-~~ 151 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD--D------PPEWQEIIKYFRG-SE 151 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTC--C------SSCHHHHHHHTTT-ST
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEe--c------ccchhhhhheecC-hh
Confidence 467889755 4677777 6899999999999999999999999999877665431 0 0011110001100 01
Q ss_pred HHHHHHHHHhhhcCcCCCCCCCCCchhh--HHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHH
Q 048654 249 LVKLREEVASLQNSTSVDGEEDGDDAND--AGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWR 326 (723)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 326 (723)
...+...... .......... ..+... .......+...+... ......++.++|+.+|+.. ..++++.+||||||
T Consensus 152 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~ 227 (608)
T 3j16_B 152 LQNYFTKMLE-DDIKAIIKPQ-YVDNIPRAIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGEL 227 (608)
T ss_dssp HHHHHHHHHH-TSCCCEEECC-CTTTHHHHCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHH
T ss_pred hhhhhhHHHH-Hhhhhhhchh-hhhhhhhhhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHH
Confidence 1111111100 0000000000 000000 000000001111110 1122467889999999974 55899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChh
Q 048654 327 MRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFD 403 (723)
Q Consensus 327 QRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~ 403 (723)
|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|... |.....
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~-~~~~~~ 306 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV-YGVVTL 306 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT-EEEECC
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc-cceecC
Confidence 9999999999999999999999999999999999999865 579999999999999999999999876532 110000
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccccceee
Q 048654 404 DFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEF 483 (723)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
.+.. +...+ .+ .... ...... ........+
T Consensus 307 ~~~~-----~~~~~-~~---------~~~~------------------------~~~~~~-----------~~~~~~~~~ 336 (608)
T 3j16_B 307 PASV-----REGIN-IF---------LDGH------------------------IPAENL-----------RFRTEALQF 336 (608)
T ss_dssp CEEH-----HHHHH-HH---------HHTE------------------------ETTTTE-----------ECSSSCCCC
T ss_pred chhH-----HHHHH-Hh---------hccc------------------------cchhhh-----------ccccccccc
Confidence 0000 00000 00 0000 000000 000000000
Q ss_pred ecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 484 HFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMG-----TRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 484 ~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~G-----e~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
....+ .....+...++++.|++. ..+++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. .
T Consensus 337 ~~~~~--~~~~~~~~~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~ 411 (608)
T 3j16_B 337 RIADA--TEDLQNDSASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--P 411 (608)
T ss_dssp CCSSS--SCCCCCCSSSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--C
T ss_pred ccccc--ccceeeeccceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--c
Confidence 00000 001112224567788653 24689999999998 78999999999999999999999999999842 2
Q ss_pred ceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 559 KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 559 ~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
...++|++|.....+. .+....+...... .......+..+++.++|.... ++++.+|||||||||+|||||+.+|
T Consensus 412 ~~~i~~~~q~~~~~~~--~tv~e~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~-~~~~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFP--GTVRQLFFKKIRG--QFLNPQFQTDVVKPLRIDDII-DQEVQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp SCCEEEECSSCCCCCC--SBHHHHHHHHCSS--TTTSHHHHHHTHHHHTSTTTS-SSBSSSCCHHHHHHHHHHHHTTSCC
T ss_pred CCcEEEecccccccCC--ccHHHHHHHHhhc--ccccHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCC
Confidence 3468999997543222 1222222211111 111335577889999998654 5778999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC--CeEEecCCCHHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN--GTVSRFPGTFEEYKED 712 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~--G~i~~~~g~~~~~~~~ 712 (723)
+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++ |++. ..|+++++...
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aD-----rvivl~~~~g~~~-~~g~p~~~~~~ 560 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLAD-----KVIVFEGIPSKNA-HARAPESLLTG 560 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS-----EEEECEEETTTEE-ECCCCEEHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEeCCCCeEE-ecCChHHHhhh
Confidence 999999999999999999999998875 4699999999999999995 9999986 8886 46888887665
Q ss_pred H
Q 048654 713 L 713 (723)
Q Consensus 713 ~ 713 (723)
.
T Consensus 561 ~ 561 (608)
T 3j16_B 561 C 561 (608)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-68 Score=611.50 Aligned_cols=457 Identities=19% Similarity=0.271 Sum_probs=297.1
Q ss_pred eEEEEeCCeeeeEeeeEEE-eCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHH
Q 048654 170 NFSVAARGKELLKSTSVRI-SHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEE 248 (723)
Q Consensus 170 nls~~y~~~~vL~~isl~i-~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 248 (723)
+.+.+||..- |+-..|.+ ++|+++|||||||||||||||+|+|++.|..|.+.. ..........+.. .+
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~--------~~~~~~~~~~~~g-~~ 73 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS--------KVGKDEVLKRFRG-KE 73 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTS--------CCCHHHHHHHHTT-ST
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcccc--------ccchhhHHhhcCC-ee
Confidence 4667786332 33344444 489999999999999999999999988776553210 0000000000000 00
Q ss_pred HHHHHHHHHh-----hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 249 LVKLREEVAS-----LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 249 ~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
...+...... ........ ..+ ..... .+... +.. .....++.++++.+|+.. ..++++.+|||
T Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~-~v~~~---l~~---~~~~~~~~~~l~~l~l~~-~~~~~~~~LSg 141 (538)
T 3ozx_A 74 IYNYFKELYSNELKIVHKIQYVE--YAS--KFLKG-TVNEI---LTK---IDERGKKDEVKELLNMTN-LWNKDANILSG 141 (538)
T ss_dssp THHHHHHHHTTCCCEEEECSCTT--GGG--TTCCS-BHHHH---HHH---HCCSSCHHHHHHHTTCGG-GTTSBGGGCCH
T ss_pred HHHHHHHHhhcccchhhccchhh--hhh--hhccC-cHHHH---hhc---chhHHHHHHHHHHcCCch-hhcCChhhCCH
Confidence 0011111100 00000000 000 00000 00011 110 011235778999999964 56899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE--ec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF--YR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~--~~ 399 (723)
||||||+|||||+.+|+|||||||||+||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|...+ +.
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~ 221 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVS 221 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcccccccc
Confidence 9999999999999999999999999999999999999999876 6899999999999999999999998653211 11
Q ss_pred CChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCcccccc
Q 048654 400 GNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDY 479 (723)
Q Consensus 400 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (723)
.++.. ...+.. + ...... .... ..... .......
T Consensus 222 ~~~~~--------~~~~~~----~------~~g~~~--------------------~~~~--~~r~~------~~~~~~~ 255 (538)
T 3ozx_A 222 KSYAA--------RVGINN----F------LKGYLP--------------------AENM--KIRPD------EIKFMLK 255 (538)
T ss_dssp CCEEH--------HHHHHH----H------HHTEET--------------------TTTE--ECSSS------CCCCSCC
T ss_pred hhhhH--------HHHHHH----H------Hhhhch--------------------hhhh--hccch------hhhcccc
Confidence 11110 000000 0 000000 0000 00000 0000000
Q ss_pred ceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc
Q 048654 480 SVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK 559 (723)
Q Consensus 480 ~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~ 559 (723)
... .........++++++|+++.|++ ..|..+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 256 ~~~--~~~~~~~~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~ 330 (538)
T 3ozx_A 256 EVS--DLDLSKDLKTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ 330 (538)
T ss_dssp ------------CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC
T ss_pred ccc--cccccccccceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe
Confidence 000 00000123568999999999975 3588889999999999999999999999999999999999999987654
Q ss_pred eeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 560 LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 560 ~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
.++|++|.....+ ..++.+.+......... .....+.++++.+++.... ++++.+|||||||||+|||||+.+|+
T Consensus 331 -~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGq~QRv~iAraL~~~p~ 405 (538)
T 3ozx_A 331 -ILSYKPQRIFPNY--DGTVQQYLENASKDALS-TSSWFFEEVTKRLNLHRLL-ESNVNDLSGGELQKLYIAATLAKEAD 405 (538)
T ss_dssp -CEEEECSSCCCCC--SSBHHHHHHHHCSSTTC-TTSHHHHHTTTTTTGGGCT-TSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred -eeEeechhccccc--CCCHHHHHHHhhhhccc-hhHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 6899999754322 12222222211111100 1224567889999997544 57789999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC--CeEEecCCCHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN--GTVSRFPGTFEEYK 710 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~--G~i~~~~g~~~~~~ 710 (723)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++ |.+. ..+++..+.
T Consensus 406 lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aD-----ri~vl~~~~~~~~-~~~~~~~~~ 476 (538)
T 3ozx_A 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIAD-----RIIVFKGEPEKAG-LATSPVTLK 476 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS-----EEEEEEEETTTEE-EECCCEEHH
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEeCCcceec-cCCChHHHH
Confidence 99999999999999999999999876 4689999999999999995 9999986 4443 234554443
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-65 Score=639.31 Aligned_cols=206 Identities=28% Similarity=0.384 Sum_probs=160.0
Q ss_pred CeEEEEEEEEEcCCCc-ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNRE-DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~-~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
..|+++||+|+|+++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 4699999999997542 35899999999999999999999999999999999999999999998763 35
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC-------C---CcCCCCCCCHHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH-------N---HLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~-------~---~~~~i~~LSGGqkqRv~lA 631 (723)
++|++|+..- ...++.+.+. ........ ..+.+.+.++..++... . .......|||||||||+||
T Consensus 1109 i~~v~Q~~~l---~~~ti~eNi~-~~~~~~~~-~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1109 LGIVSQEPIL---FDCSIAENIA-YGDNSRVV-SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp CEEEESSCCC---CSSBHHHHHT-CCCSSCCC-CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred eEEECCCCcc---ccccHHHHHh-ccCCCCCC-CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence 8999998521 2234333332 21111111 22334444444433211 1 0123468999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||+|||+.+...+.+.|++.. .|||+||||++++. .| |||++|++|+|++ .|+++++
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~-~~-----dri~vl~~G~i~~-~g~~~~l 1256 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ-NA-----DLIVVIQNGKVKE-HGTHQQL 1256 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG-SC-----SEEEEEETBEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH-cC-----CEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999998864 59999999999985 47 5999999999986 4898887
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
.+
T Consensus 1257 ~~ 1258 (1284)
T 3g5u_A 1257 LA 1258 (1284)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-63 Score=619.24 Aligned_cols=205 Identities=27% Similarity=0.369 Sum_probs=163.8
Q ss_pred eEEEEEEEEEcCCCc-ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 495 LLQLIEVSFSYPNRE-DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~-~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
-|+++||+|+|+++. .++|+||||+|++||++|||||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 599999999998643 36899999999999999999999999999999999999999999999873 369
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC------CCcCCC----CCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH------NHLTPI----AKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~------~~~~~i----~~LSGGqkqRv~lAr 632 (723)
++++|++.- ...++.+.+ .+..+... ...+++.++++..++.+. -.+..+ ..||||||||++|||
T Consensus 1156 ~~V~Qdp~L---F~gTIreNI-~~gld~~~-~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1156 AIVSQEPTL---FDCSIAENI-IYGLDPSS-VTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp EEECSSCCC---CSEEHHHHH-SSSSCTTT-SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred EEECCCCEe---eCccHHHHH-hccCCCCC-CCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence 999998531 223333332 22111111 134567777777665211 011222 479999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+++|+||||||||++||+++-..|.+.|++. +.|||+|+|.+..+.. | |+|+||++|+|+++ |+++++.
T Consensus 1231 Allr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-a-----D~I~Vld~G~IvE~-Gth~eLl 1303 (1321)
T 4f4c_A 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-A-----DCIAVVSNGTIIEK-GTHTQLM 1303 (1321)
T ss_dssp HHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-C-----SEEEEESSSSEEEE-ECHHHHH
T ss_pred HHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-C-----CEEEEEECCEEEEE-CCHHHHH
Confidence 999999999999999999999999999999886 3699999999998863 5 69999999999975 8999986
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 1304 ~ 1304 (1321)
T 4f4c_A 1304 S 1304 (1321)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-64 Score=594.95 Aligned_cols=329 Identities=26% Similarity=0.338 Sum_probs=227.1
Q ss_pred HHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCC
Q 048654 302 KILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT--LLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHD 376 (723)
Q Consensus 302 ~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~--lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHd 376 (723)
.+|+.+||.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++.+|.++|+++ +.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 468899997554579999999999999999999999998 99999999999999999999988765 6899999999
Q ss_pred HHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHH
Q 048654 377 RDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAA 450 (723)
Q Consensus 377 l~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (723)
++++. .||+|++| ++|+++ +.|+++++...... + ... ..
T Consensus 264 ~~~~~-~~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~~~~~----~--------------------------~~~--~~- 308 (670)
T 3ux8_A 264 EDTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPNS----L--------------------------TGQ--YL- 308 (670)
T ss_dssp HHHHH-HCSEEEEECSSSGGGCCSEE-EEECHHHHHTCTTC----H--------------------------HHH--HH-
T ss_pred HHHHh-hCCEEEEecccccccCCEEE-EecCHHHHhcCchh----H--------------------------HHH--Hh-
Confidence 99876 59999999 899986 45777665321000 0 000 00
Q ss_pred HHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEc
Q 048654 451 AKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVG 530 (723)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvG 530 (723)
..... .. .+. .........+.+.+.+ ..+|+||||+|++||+++|+|
T Consensus 309 -------~~~~~------~~-~~~------------~~~~~~~~~~~~~~~~-------~~~L~~vsl~I~~Ge~vaIiG 355 (670)
T 3ux8_A 309 -------SGKKF------IP-IPA------------ERRRPDGRWLEVVGAR-------EHNLKNVSVKIPLGTFVAVTG 355 (670)
T ss_dssp -------TTSSC------CC-CCS------------SCCCCCSCEEEEEEEC-------STTCCSEEEEEETTSEEEEEC
T ss_pred -------ccccc------cc-ccc------------ccccccccceeecCcc-------ccccccceeEecCCCEEEEEe
Confidence 00000 00 000 0001112345554432 247999999999999999999
Q ss_pred CCCCcHHHHHHHHH----------------------cCCCCCcceEEECCcee---------------------------
Q 048654 531 PNGAGKSTLLNLLA----------------------GDLSPTEGEVRRSQKLR--------------------------- 561 (723)
Q Consensus 531 pNGsGKSTLlk~L~----------------------Gl~~p~~G~I~~~~~~~--------------------------- 561 (723)
|||||||||+++|+ |+..+ .|.|.+.+...
T Consensus 356 pnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (670)
T 3ux8_A 356 VSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNE 434 (670)
T ss_dssp STTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccch
Confidence 99999999998764 22222 23443332110
Q ss_pred -------------------------EEEEcccc--ccccCc----------------------------cccHHHHHHhh
Q 048654 562 -------------------------IGRYSQHF--VDLLTM----------------------------EETPVSYLLRL 586 (723)
Q Consensus 562 -------------------------ig~~~q~~--~~~~~~----------------------------~~~~~~~~~~~ 586 (723)
.|++++.+ .+...+ ..+..+ .+.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e-~l~~ 513 (670)
T 3ux8_A 435 AKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVED-ALDF 513 (670)
T ss_dssp HHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHH-HHHH
T ss_pred hhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHH-HHHH
Confidence 00010000 000000 000000 0111
Q ss_pred CCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC---eEEeccCCCCCCHHHHHHHHHHHH
Q 048654 587 HPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH---ILLLDEPTNHLDMQSIDALADALD 663 (723)
Q Consensus 587 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~---lLlLDEPT~~LD~~s~~~l~~~L~ 663 (723)
+.. ......+.+.|..+++......+++.+|||||||||+|||||+.+|+ ||||||||+|||+.+...+.++|+
T Consensus 514 ~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~ 590 (670)
T 3ux8_A 514 FAS---IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH 590 (670)
T ss_dssp TTT---CHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHH---hhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 111 11224456778889997544457789999999999999999998874 999999999999999999999988
Q ss_pred Hc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHH
Q 048654 664 EF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYK 710 (723)
Q Consensus 664 ~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~ 710 (723)
++ +.|||+||||++++ ..| |||++| ++|+|+ +.|+++++.
T Consensus 591 ~l~~~g~tvi~vtHd~~~~-~~~-----d~i~~l~~~~g~~~G~i~-~~g~~~~~~ 639 (670)
T 3ux8_A 591 RLVDNGDTVLVIEHNLDVI-KTA-----DYIIDLGPEGGDRGGQIV-AVGTPEEVA 639 (670)
T ss_dssp HHHHTTCEEEEECCCHHHH-TTC-----SEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred HHHHCCCEEEEEeCCHHHH-HhC-----CEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence 76 46999999999987 468 499999 899997 468887753
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=495.15 Aligned_cols=334 Identities=23% Similarity=0.285 Sum_probs=236.9
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 048654 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTL 370 (723)
Q Consensus 296 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TV 370 (723)
...++. +|..+||.....++++.+|||||+|||+||++|+.+| .||||||||++||+..+.+|.++|+++ +.||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 445555 6889999744358999999999999999999999999 499999999999999999999877654 7899
Q ss_pred EEEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHH
Q 048654 371 VVVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKD 444 (723)
Q Consensus 371 IivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (723)
|+|+||++++. .||+|++| ++|+++ +.|+++++........ .
T Consensus 435 IvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~~~~~~~----~-------------------------- 482 (842)
T 2vf7_A 435 FVVEHDLDVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKHVPESQT----G-------------------------- 482 (842)
T ss_dssp EEECCCHHHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGGCTTCHH----H--------------------------
T ss_pred EEEcCCHHHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHhchHHHH----H--------------------------
Confidence 99999999875 69999999 688885 6799888753210000 0
Q ss_pred HHHHHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCc
Q 048654 445 RAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGT 524 (723)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge 524 (723)
... ..... .. +. ......++|+++|+++. .|+||||+|+.|+
T Consensus 483 --~~l--------~~~~~------~~--~~-------------~~~~~~~~L~v~~l~~~-------~L~~vsl~i~~Ge 524 (842)
T 2vf7_A 483 --QYL--------FADRH------TE--PH-------------TPREPAGWLELNGVTRN-------NLDNLDVRFPLGV 524 (842)
T ss_dssp --HHH--------HTCCC------CC--CC-------------CCCCCSCEEEEEEEEET-------TEEEEEEEEESSS
T ss_pred --HHh--------hhccc------cc--cc-------------ccCCCCceEEEEeeeec-------ccccceEEEcCCC
Confidence 000 00000 00 00 00113468999999861 5999999999999
Q ss_pred EEEEEcCCCCcHHHHHHH-HHcCC-------CCCcceEE------------ECC---c-eeEEEEccccccccCc-----
Q 048654 525 RVAIVGPNGAGKSTLLNL-LAGDL-------SPTEGEVR------------RSQ---K-LRIGRYSQHFVDLLTM----- 575 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~-L~Gl~-------~p~~G~I~------------~~~---~-~~ig~~~q~~~~~~~~----- 575 (723)
+++|+|+||||||||+++ |+|++ +|+.|.+. ..| . .++.++.|........
T Consensus 525 iv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at 604 (842)
T 2vf7_A 525 MTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMAT 604 (842)
T ss_dssp EEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHH
T ss_pred EEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchh
Confidence 999999999999999996 77554 35344331 011 0 0122333321100000
Q ss_pred ------------------------------------------------------------------------------cc
Q 048654 576 ------------------------------------------------------------------------------EE 577 (723)
Q Consensus 576 ------------------------------------------------------------------------------~~ 577 (723)
..
T Consensus 605 ~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~ 684 (842)
T 2vf7_A 605 YTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGK 684 (842)
T ss_dssp HSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTB
T ss_pred hhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCC
Confidence 00
Q ss_pred cH-------HHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC---CCeEEeccCC
Q 048654 578 TP-------VSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK---PHILLLDEPT 647 (723)
Q Consensus 578 ~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~---p~lLlLDEPT 647 (723)
+. +...+.++.. ......+.++|+.|||......+++.+|||||||||+||++|+.+ |+||||||||
T Consensus 685 si~e~l~ltv~e~l~~~~~---~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 761 (842)
T 2vf7_A 685 NIADVLALTVDEAHDFFAD---ESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT 761 (842)
T ss_dssp CHHHHHTCBHHHHHHHTTT---SHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT
T ss_pred CHHHHHhccHHHHHHHhhc---chHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 00 0000111111 112345678999999986444577899999999999999999996 7999999999
Q ss_pred CCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHH
Q 048654 648 NHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYK 710 (723)
Q Consensus 648 ~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~ 710 (723)
+|||+.++..|.++|+++ +.|||+||||++++ .+|| +|++| ++|+|+ +.|+++++.
T Consensus 762 sGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aD-----rii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 762 TGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASD-----WVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS-----EEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC-----EEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 999999999999998776 46999999999999 6784 99999 689997 468888764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=464.83 Aligned_cols=335 Identities=24% Similarity=0.356 Sum_probs=233.7
Q ss_pred HHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEE
Q 048654 299 QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT--LLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVV 373 (723)
Q Consensus 299 ~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~--lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIiv 373 (723)
+..++|..+||.....++++.+|||||+|||+|||||+++|+ ||||||||+|||+..+.+|.++|+++ +.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 445778889997544579999999999999999999999887 99999999999999999999999876 5799999
Q ss_pred eCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHH
Q 048654 374 SHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAK 447 (723)
Q Consensus 374 sHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (723)
|||++++.. ||+|++| ++|+++ +.|+++++...... .... .
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~~~~~-----------------------------~~~~--~ 569 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLKNPDS-----------------------------SLTG--E 569 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHHSCTT-----------------------------CHHH--H
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEE-EeechhhhhcCchh-----------------------------cchh--h
Confidence 999999876 9999999 889986 67888776321000 0000 0
Q ss_pred HHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEE
Q 048654 448 SAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVA 527 (723)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~va 527 (723)
.. ...... . .+.........+++.+++ ...|+||||+|+.|++++
T Consensus 570 ~l--------~~~~~~-------~-------------~~~~~~~~~~~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~ 614 (916)
T 3pih_A 570 YL--------SGKRKI-------T-------------VNKTRRLPYASLKIKGVR-------HNNLKNIDVEIPLGVFVC 614 (916)
T ss_dssp HH--------HSSSCC-------C-------------CCSSCCCCSSEEEEEEEC-------STTCCSEEEEEESSSEEE
T ss_pred hh--------hccccc-------c-------------cccccccccceEEEeeec-------cccccccceEEcCCcEEE
Confidence 00 000000 0 000001112356666654 136999999999999999
Q ss_pred EEcCCCCcHHHHH---------HHHHcCCCCCcceEEECCce---eE---------------------------------
Q 048654 528 IVGPNGAGKSTLL---------NLLAGDLSPTEGEVRRSQKL---RI--------------------------------- 562 (723)
Q Consensus 528 IvGpNGsGKSTLl---------k~L~Gl~~p~~G~I~~~~~~---~i--------------------------------- 562 (723)
|+|+||||||||+ +++.|...+..+.....+.. .+
T Consensus 615 I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~ 694 (916)
T 3pih_A 615 VTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMT 694 (916)
T ss_dssp EECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTS
T ss_pred EEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccc
Confidence 9999999999997 45555544433221111110 01
Q ss_pred ----------------------------EEEccccc--cccCc--------------------cccH-------HHHHHh
Q 048654 563 ----------------------------GRYSQHFV--DLLTM--------------------EETP-------VSYLLR 585 (723)
Q Consensus 563 ----------------------------g~~~q~~~--~~~~~--------------------~~~~-------~~~~~~ 585 (723)
|++.+.+. ..+.+ ..+. +...+.
T Consensus 695 ~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~ 774 (916)
T 3pih_A 695 PAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALE 774 (916)
T ss_dssp HHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHH
T ss_pred hHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHH
Confidence 11111100 00000 0000 000111
Q ss_pred hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC---CeEEeccCCCCCCHHHHHHHHHHH
Q 048654 586 LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP---HILLLDEPTNHLDMQSIDALADAL 662 (723)
Q Consensus 586 ~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p---~lLlLDEPT~~LD~~s~~~l~~~L 662 (723)
++.. ......+.++|..+||......+++.+|||||||||+|||+|+.+| +||||||||+|||+.++..|+++|
T Consensus 775 f~~~---~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL 851 (916)
T 3pih_A 775 FFKN---IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVL 851 (916)
T ss_dssp HTTT---CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHhc---chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 1111 1123456678999999765555788999999999999999999875 799999999999999999999999
Q ss_pred HHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHHH
Q 048654 663 DEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 663 ~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~~ 711 (723)
+++ +.|||+||||++++. .| |+|++| ++|+|+ +.|+++++.+
T Consensus 852 ~~L~~~G~TVIvI~HdL~~i~-~A-----DrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 852 HRLVDRGNTVIVIEHNLDVIK-NA-----DHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp HHHHHTTCEEEEECCCHHHHT-TC-----SEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred HHHHhcCCEEEEEeCCHHHHH-hC-----CEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 876 469999999999985 47 499999 899998 4689988653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-49 Score=464.33 Aligned_cols=336 Identities=26% Similarity=0.331 Sum_probs=235.6
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 048654 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTL 370 (723)
Q Consensus 296 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TV 370 (723)
...++ ++|..+||.....++++.+|||||+|||+||++|..+| +||||||||++||+....+|++.|+++ +.||
T Consensus 481 i~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV 559 (972)
T 2r6f_A 481 IRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 559 (972)
T ss_dssp HHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 34555 46899999744358999999999999999999999985 999999999999999999999888754 6899
Q ss_pred EEEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHH
Q 048654 371 VVVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKD 444 (723)
Q Consensus 371 IivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (723)
|+|+||++++. .||+|++| ++|+++ +.|+++++...... + ....+
T Consensus 560 IvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~~~~~s----l---------------------t~~~l-- 610 (972)
T 2r6f_A 560 IVVEHDEDTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPNS----L---------------------TGQYL-- 610 (972)
T ss_dssp EEECCCHHHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTTTCTTC----T---------------------THHHH--
T ss_pred EEEecCHHHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHHhhhHH----H---------------------HHHHh--
Confidence 99999999986 69999999 788886 67888876431000 0 00000
Q ss_pred HHHHHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCc
Q 048654 445 RAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGT 524 (723)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge 524 (723)
.+.... ..+.. ......++|++++++. ..|+||||+|+.|+
T Consensus 611 -------------~g~~~~-------~~~~~------------~~~~~~~~L~v~~l~~-------~~Lk~Vsl~I~~Ge 651 (972)
T 2r6f_A 611 -------------SGKKFI-------PIPAE------------RRRPDGRWLEVVGARE-------HNLKNVSVKIPLGT 651 (972)
T ss_dssp -------------HTSSCC-------CCCSS------------CCCCCSCEEEEEEECS-------SSCCSEEEEEESSS
T ss_pred -------------cCCccc-------cCccc------------cccccceEEEEecCcc-------cccccceEEEcCCC
Confidence 000000 00000 0011246899999862 25999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cCC-------CCCcce-------------EEECCce-----------------------
Q 048654 525 RVAIVGPNGAGKSTLLNLLA-GDL-------SPTEGE-------------VRRSQKL----------------------- 560 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~-Gl~-------~p~~G~-------------I~~~~~~----------------------- 560 (723)
+++|+|+||||||||+++|+ |.+ .+..|. |.+++..
T Consensus 652 iv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lf 731 (972)
T 2r6f_A 652 FVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVF 731 (972)
T ss_dssp EEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHh
Confidence 99999999999999999853 322 123343 2222210
Q ss_pred -------eEEEEccccccccC-------------------c-------------------------cccH-------HHH
Q 048654 561 -------RIGRYSQHFVDLLT-------------------M-------------------------EETP-------VSY 582 (723)
Q Consensus 561 -------~ig~~~q~~~~~~~-------------------~-------------------------~~~~-------~~~ 582 (723)
.+||++|.|..... . ..+. +..
T Consensus 732 a~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e 811 (972)
T 2r6f_A 732 ASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVED 811 (972)
T ss_dssp HTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHH
T ss_pred ccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHH
Confidence 01222232110000 0 0000 000
Q ss_pred HHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC---CeEEeccCCCCCCHHHHHHHH
Q 048654 583 LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP---HILLLDEPTNHLDMQSIDALA 659 (723)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p---~lLlLDEPT~~LD~~s~~~l~ 659 (723)
.+.++.. ......+.++|+.|||......+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.
T Consensus 812 ~l~~~~~---~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~ 888 (972)
T 2r6f_A 812 ALDFFAS---IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL 888 (972)
T ss_dssp HHHHTCS---CHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHH
T ss_pred HHHHHhc---chhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 0111111 1122345678999999763445778999999999999999999865 999999999999999999999
Q ss_pred HHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHH
Q 048654 660 DALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYK 710 (723)
Q Consensus 660 ~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~ 710 (723)
++|+++ +.|||+||||++++ .+| |+|++| ++|+|+ +.|+++++.
T Consensus 889 ~lL~~L~~~G~TVIvisHdl~~i-~~a-----DrIivL~p~gG~~~G~Iv-~~g~~~el~ 941 (972)
T 2r6f_A 889 DVLHRLVDNGDTVLVIEHNLDVI-KTA-----DYIIDLGPEGGDRGGQIV-AVGTPEEVA 941 (972)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHH-TTC-----SEEEEECSSSTTSCCSEE-EEESHHHHH
T ss_pred HHHHHHHhCCCEEEEEcCCHHHH-HhC-----CEEEEEcCCCCCCCCEEE-EecCHHHHH
Confidence 999876 46999999999997 467 499999 689997 457877653
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=372.91 Aligned_cols=209 Identities=26% Similarity=0.386 Sum_probs=170.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
.++|+++||+++|++. ..+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 5 DYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp CEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred CcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 4589999999999753 35899999999999999999999999999999999999999999998763
Q ss_pred eeEEEEccccccc---cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 LRIGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 ~~ig~~~q~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..+||++|++... +++.++... ...... .......+.+.++|+.+||.... ++++.+|||||||||+|||||+.
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSF-GAVNMK-LPEDEIRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHH-HHHTSC-CCHHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHTT
T ss_pred CcEEEEEcCcccccccCcHHHHHHH-HHHHcC-CCHHHHHHHHHHHHHHcCCchhh-cCCcccCCHHHHHHHHHHHHHHc
Confidence 2489999975322 233333221 111111 10001235688899999997554 46779999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++|+|+ +.|+++++..
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d-----rv~~l~~G~i~-~~g~~~~~~~ 233 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCD-----NVFVMKEGRVI-LQGNPKEVFA 233 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCS-----EEEEEETTEEE-EEECHHHHTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEE-EECCHHHHhc
Confidence 99999999999999999999999998775 3589999999999999995 99999999997 4688887643
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=383.23 Aligned_cols=210 Identities=27% Similarity=0.372 Sum_probs=172.2
Q ss_pred CCCeEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------
Q 048654 492 TPPLLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------- 559 (723)
..++|+++||++.|++. ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45799999999999642 235899999999999999999999999999999999999999999998763
Q ss_pred ----eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 ----~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..+||++|++. ..+++.++.... +...... .....+++.++|+.+||.... ++++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~-~~~~~~~-~~~~~~~v~~lL~~vgL~~~~-~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALP-LELDNTP-KDEVKRRVTELLSLVGLGDKH-DSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHH-HHHSCCC-HHHHHHHHHHHHHHHTCGGGT-TCCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHH-HHhcCCC-HHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHH
Confidence 25999999753 334454543322 2222110 011235688899999997654 46779999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|+.+|+||||||||++||+.+...++++|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aD-----rv~vl~~G~iv~-~g~~~ev 251 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD-----CVAVISNGELIE-QDTVSEV 251 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-CCBHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999999999876 4699999999999999995 999999999984 6888775
Q ss_pred H
Q 048654 710 K 710 (723)
Q Consensus 710 ~ 710 (723)
.
T Consensus 252 ~ 252 (366)
T 3tui_C 252 F 252 (366)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=364.64 Aligned_cols=206 Identities=31% Similarity=0.422 Sum_probs=164.3
Q ss_pred eEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+|+++||+++|++.. ..+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 589999999997432 35899999999999999999999999999999999999999999998773
Q ss_pred --eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 560 --LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 560 --~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
..+||++|++. ..+++.++..... ... ...... ..+.+.++|+.+++.....++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPL-IFK-YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHH-HTC-SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHH-Hhh-hccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 14999999753 2334444432211 111 001111 23457789999999764435678999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||+.+|+||||||||+|||+.+...+.++|+++ +.|||+||||++.+ .+|| +|++|++|+|+. .++.++
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d-----~i~~l~~G~i~~-~~~~~~ 231 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGE-----RIIYLKDGEVER-EEKLRG 231 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSS-----EEEEEETTEEEE-EEECC-
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCC-----EEEEEECCEEEE-EcChhh
Confidence 999999999999999999999999999999876 46999999999965 6884 999999999975 455555
Q ss_pred H
Q 048654 709 Y 709 (723)
Q Consensus 709 ~ 709 (723)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=361.84 Aligned_cols=207 Identities=29% Similarity=0.352 Sum_probs=170.3
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.++|+++||++.|++ ..+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 9 ~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred cceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 368999999999975 35899999999999999999999999999999999999999999998774 14
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc-----
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS----- 636 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~----- 636 (723)
++|++|.....+ ..++.+.+.............+.+.++++.+++.... ++++.+|||||||||+|||||+.
T Consensus 87 i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 87 RAVMRQYSELAF--PFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-QRDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp EEEECSCCCCCS--CCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT-TSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred EEEEecCCccCC--CCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 899999743211 1232222221111111122456788999999997654 46779999999999999999999
Q ss_pred -CCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 637 -KPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 637 -~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| ||++|++|+|+. .|+++++.
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d-----~v~vl~~G~i~~-~g~~~~~~ 236 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYAD-----RIMLLAQGKLVA-CGTPEEVL 236 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHC
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHh
Confidence 999999999999999999999999998762 489999999999999995 999999999974 68888764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-43 Score=365.36 Aligned_cols=208 Identities=24% Similarity=0.357 Sum_probs=168.7
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
.++|+++||+++|++ ..+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred CceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 358999999999975 35899999999999999999999999999999999999999999988652
Q ss_pred -----------eeEEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC-CCcCCCCCCCHHHH
Q 048654 560 -----------LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH-NHLTPIAKLSGGQK 625 (723)
Q Consensus 560 -----------~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~-~~~~~i~~LSGGqk 625 (723)
..++|++|+. ...+++.++.......... .......+.+.++|+.+||... . ++++.+||||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~LSgGq~ 159 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG-LSKHDARERALKYLAKVGIDERAQ-GKYPVHLSGGQQ 159 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTCCHHHH-TSCGGGSCHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcC-CCHHHHHHHHHHHHHHcCCCchhh-cCCcccCCHHHH
Confidence 1389999974 2233444443221111111 1000123567889999999754 4 467799999999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEec
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~ 702 (723)
|||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+|+.
T Consensus 160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~i~~- 233 (262)
T 1b0u_A 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS-----HVIFLHQGKIEE- 233 (262)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS-----EEEEEETTEEEE-
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-
Confidence 9999999999999999999999999999999999999876 4689999999999999995 999999999974
Q ss_pred CCCHHHHH
Q 048654 703 PGTFEEYK 710 (723)
Q Consensus 703 ~g~~~~~~ 710 (723)
.|+++++.
T Consensus 234 ~g~~~~~~ 241 (262)
T 1b0u_A 234 EGDPEQVF 241 (262)
T ss_dssp EECHHHHH
T ss_pred eCCHHHHH
Confidence 57777654
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=374.20 Aligned_cols=224 Identities=23% Similarity=0.352 Sum_probs=175.9
Q ss_pred CccceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH
Q 048654 162 NVKDITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~ 237 (723)
..++|+++||+++|++ .++|+||||+|++|+++||+||||||||||+|+|+|+.. |.+|+|.+.++++......
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHH
Confidence 3457999999999964 479999999999999999999999999999999999865 4678888888877644322
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
. ...++..++++.+.... .....+.+++..... +......+..+++.++|+.+||.+ ..+++
T Consensus 99 ~----------~~~~r~~Ig~v~Q~~~l------~~~~TV~env~~~~~-~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~ 160 (366)
T 3tui_C 99 E----------LTKARRQIGMIFQHFNL------LSSRTVFGNVALPLE-LDNTPKDEVKRRVTELLSLVGLGD-KHDSY 160 (366)
T ss_dssp H----------HHHHHTTEEEECSSCCC------CTTSCHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHTCGG-GTTCC
T ss_pred H----------HHHHhCcEEEEeCCCcc------CCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhcCC
Confidence 1 12233445555432211 112234444443322 222344566788999999999974 56899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|
T Consensus 161 ~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G 240 (366)
T 3tui_C 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 240 (366)
T ss_dssp TTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999988754 689999999999999999999999999
Q ss_pred EEEEecCChhhHH
Q 048654 394 KLHFYRGNFDDFE 406 (723)
Q Consensus 394 ~i~~~~g~~~~~~ 406 (723)
+++ ..|+..++.
T Consensus 241 ~iv-~~g~~~ev~ 252 (366)
T 3tui_C 241 ELI-EQDTVSEVF 252 (366)
T ss_dssp EEE-ECCBHHHHH
T ss_pred EEE-EEcCHHHHH
Confidence 997 458776654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=362.46 Aligned_cols=208 Identities=24% Similarity=0.338 Sum_probs=169.9
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------e
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------L 560 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------~ 560 (723)
++|+++||++.|++ ..+|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 23 ~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 23 QMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp CSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred heEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 47999999999975 35899999999999999999999999999999999999999999998763 1
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.++|++|+.. ..+++.++.......... .......+.+.++|+.+||.... ++++.+|||||||||+|||||+.+|
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRK-WPREKAEAKAMELLDKVGLKDKA-HAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchHh-cCChhhCCHHHHHHHHHHHHHHCCC
Confidence 4899999742 233444443221111111 10001234678899999997554 4677999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~~ 248 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGD-----RVLFMDGGYIIE-EGKPEDLFD 248 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999876 4699999999999999995 999999999974 588877653
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=358.03 Aligned_cols=220 Identities=25% Similarity=0.345 Sum_probs=169.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++. .....
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~-~~~~~------ 94 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLK-AKDTN------ 94 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESS-STTCC------
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECC-Ccccc------
Confidence 6999999999999999999999999999999999999999999999999865 46788888777653 11100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++..++++.+.... .....+.+++................+++.++|+.+|+.. ..++++.+||||
T Consensus 95 ----~~~~~~~i~~v~Q~~~l------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG 163 (263)
T 2olj_A 95 ----LNKVREEVGMVFQRFNL------FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-KAHAYPDSLSGG 163 (263)
T ss_dssp ----HHHHHHHEEEECSSCCC------CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHH
T ss_pred ----HHHHhCcEEEEeCCCcC------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCChhhCCHH
Confidence 01123344444332111 1112333433321111111223344678899999999964 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+
T Consensus 164 qkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~ 242 (263)
T 2olj_A 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGK 242 (263)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECC
Confidence 999999999999999999999999999999999999998765 6799999999999999999999999999974 477
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+++
T Consensus 243 ~~~~ 246 (263)
T 2olj_A 243 PEDL 246 (263)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=376.58 Aligned_cols=207 Identities=29% Similarity=0.367 Sum_probs=168.2
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------e
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------L 560 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------~ 560 (723)
++|+++||+++|++ ..+|+||||+|.+||+++|+||||||||||||+|+|+++|++|+|.++++ .
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 37999999999975 35899999999999999999999999999999999999999999998663 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.+||++|++. ..+++.++.. +.+... ........+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~-~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIA-YGLGNG-KGRTAQERQRIEAMLELTGISELA-GRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHH-TTSTTS-SCCSHHHHHHHHHHHHHHTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEeCCCcCCCCCCHHHHHH-HHHHHc-CCChHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 4899999752 3334444321 111110 000111345688999999998655 4677999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHH----cCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDE----FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~----~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+||||||||++||+..+..+.+.|.+ .+.|||+||||++++..+|| ||++|++|+|+. .|+++++..
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aD-----ri~vl~~G~i~~-~g~~~el~~ 228 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYAD-----RIAVMKQGRILQ-TASPHELYR 228 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCC-----EEEEEECCEEEE-EeCHHHHHh
Confidence 99999999999999999988876544 35799999999999999995 999999999974 588887654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=357.20 Aligned_cols=223 Identities=28% Similarity=0.399 Sum_probs=170.5
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecC----------C
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVG----------D 234 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~----------~ 234 (723)
+|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccccccccccccc
Confidence 5999999999999999999999999999999999999999999999999865 457888887766531 1
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc
Q 048654 235 DRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
... ....++..++++.+.... .....+.+++.................++.++|+.+|+.....
T Consensus 84 ~~~----------~~~~~~~~i~~v~Q~~~l------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 84 DKN----------QLRLLRTRLTMVFQHFNL------WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CHH----------HHHHHHHHEEEECSSCCC------CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred Chh----------hHHHHhcceEEEecCccc------CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhh
Confidence 111 111223344454332111 1122333443321111111223344678899999999974315
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|+
T Consensus 148 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (262)
T 1b0u_A 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 227 (262)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999988764 6799999999999999999999999
Q ss_pred CCEEEEecCChhhHH
Q 048654 392 DQKLHFYRGNFDDFE 406 (723)
Q Consensus 392 ~G~i~~~~g~~~~~~ 406 (723)
+|+++. .|+.+++.
T Consensus 228 ~G~i~~-~g~~~~~~ 241 (262)
T 1b0u_A 228 QGKIEE-EGDPEQVF 241 (262)
T ss_dssp TTEEEE-EECHHHHH
T ss_pred CCEEEE-eCCHHHHH
Confidence 999974 47766553
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=353.05 Aligned_cols=206 Identities=20% Similarity=0.297 Sum_probs=167.8
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
.++|+++||+++|++ ..+|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 4 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp SEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred CceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 468999999999975 35899999999999999999999999999999999999999999998763 1
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCC-CCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-LPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g-l~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
.++|++|+.. ..+++.++.. .............+.+..+++.|+ +.... ++++.+|||||||||+|||||+.+
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLM---MGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHH---GGGTTCCCSSHHHHHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred CEEEEecCCccCCCCcHHHHHH---HhhhcCCCHHHHHHHHHHHHHHcccHhhHh-cCChhhCCHHHHHHHHHHHHHHcC
Confidence 3999999742 2233333321 111111111112356778899994 86554 467799999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH-----YGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EEEHHHHH
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999999999876 3589999999999999995 999999999974 57777764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=351.92 Aligned_cols=197 Identities=25% Similarity=0.326 Sum_probs=162.2
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------- 559 (723)
++|+++|++++|++ ..+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 47999999999975 35899999999999999999999999999999999999999999998752
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..++|++|+.. ..+++.++... ....... ......+.+.++|+.+||.+.. ++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~-~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIV-PMLKMGK-PKKEAKERGEYLLSELGLGDKL-SRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHH-HHHHTTC-CHHHHHHHHHHHHHHTTCTTCT-TCCGGGSCHHHHHHHHHHHHTTT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHh-HHHHcCC-CHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHHc
Confidence 24899999742 23344444322 1111111 0001235678899999997654 46779999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++ .+|| +|++|++|+++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d-----~v~~l~~G~i~~ 219 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTH-----RTLEMKDGKVVG 219 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSS-----EEEEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCC-----EEEEEECCEEEE
Confidence 99999999999999999999999999876 46999999999988 7884 999999999974
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-42 Score=360.12 Aligned_cols=222 Identities=22% Similarity=0.331 Sum_probs=171.2
Q ss_pred cceEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
++|+++||+++|++ .++|+||||+|++|+++||+||||||||||+++|+|+.. |..|+|.+.++++... ..
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~-~~----- 77 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYS-RK----- 77 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCS-HH-----
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcc-cc-----
Confidence 36999999999975 569999999999999999999999999999999999865 4678888887766321 11
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
....++..++++.+.... ......+.+++..... .......+..+++.++|+.+|+. ...++++.+||
T Consensus 78 -----~~~~~~~~ig~v~Q~~~~-----~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS 145 (275)
T 3gfo_A 78 -----GIMKLRESIGIVFQDPDN-----QLFSASVYQDVSFGAV-NMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLS 145 (275)
T ss_dssp -----HHHHHHHSEEEECSSGGG-----TCCSSBHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSC
T ss_pred -----cHHHHhCcEEEEEcCccc-----ccccCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCC
Confidence 111233444444332100 0001233343332221 11223445677899999999996 45689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 146 gGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~- 224 (275)
T 3gfo_A 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL- 224 (275)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-
Confidence 99999999999999999999999999999999999999888654 6799999999999999999999999999974
Q ss_pred cCChhhHH
Q 048654 399 RGNFDDFE 406 (723)
Q Consensus 399 ~g~~~~~~ 406 (723)
.|+.+++.
T Consensus 225 ~g~~~~~~ 232 (275)
T 3gfo_A 225 QGNPKEVF 232 (275)
T ss_dssp EECHHHHT
T ss_pred ECCHHHHh
Confidence 58877654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=347.60 Aligned_cols=212 Identities=26% Similarity=0.349 Sum_probs=164.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.++++.......
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~------ 75 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKE------ 75 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHH------
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHH------
Confidence 5999999999999999999999999999999999999999999999999865 46788888777664322211
Q ss_pred hhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 245 AHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
...++ ..++++.+.... .....+.+++.... ...........+++.++++.+|+.+ ..++++.+|||
T Consensus 76 ----~~~~~~~~i~~v~q~~~l------~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSg 143 (224)
T 2pcj_A 76 ----LSLLRNRKLGFVFQFHYL------IPELTALENVIVPM-LKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSG 143 (224)
T ss_dssp ----HHHHHHHHEEEECSSCCC------CTTSCHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCH
T ss_pred ----HHHHHhCcEEEEecCccc------CCCCCHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCH
Confidence 11122 334444332111 11123334333221 1112222345678899999999974 45799999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++ .+||+|++|++|+++.
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988764 67999999999998 7999999999999964
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=374.99 Aligned_cols=206 Identities=27% Similarity=0.343 Sum_probs=171.5
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++||+++|++ ..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++++ ..+||+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 5899999999975 35899999999999999999999999999999999999999999998764 359999
Q ss_pred cccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|++ +..+++.++.... +...... .....+++.++|+.++|.... ++++.+|||||||||+|||||+.+|+||||
T Consensus 81 fQ~~~l~p~ltV~eni~~~-~~~~~~~-~~~~~~~v~~~l~~~~L~~~~-~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFG-LKLAGAK-KEVINQRVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHH-HHHTTCC-HHHHHHHHHHHHHHTTCGGGT-TCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred ecCCcCCCCCCHHHHHHHH-HHHcCCC-HHHHHHHHHHHHHHcCCchhh-cCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9975 3345555553322 2222110 001245688999999998655 467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||++||+..+..+.+.|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD-----ri~vl~~G~i~~-~g~~~~l~~ 223 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD-----KIVVLDAGRVAQ-VGKPLELYH 223 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC-----EEEEEECCEEEE-EeCHHHHHh
Confidence 9999999999999999888765 5699999999999999995 999999999975 588887643
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=358.39 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=169.8
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeE
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRI 562 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~i 562 (723)
.++|+++||++.|++ ..+|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 468999999999975 35899999999999999999999999999999999999999999998763 248
Q ss_pred EEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 563 GRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 563 g~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++|... ..+++.++.... ...+... .....+.+.++|+.+||.... ++++.+|||||||||+|||||+.+|+|
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~-~~~~~~~-~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFV-AGFYASS-SSEIEEMVERATEIAGLGEKI-KDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHH-HHHHCCC-HHHHHHHHHHHHHHHCCGGGG-GSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEcCCCCCCCCCcHHHHHHHH-HHHcCCC-hHHHHHHHHHHHHHCCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999742 233444443221 1111110 001134678899999997544 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.+
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~~ 235 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD-----RIALIHNGTIVE-TGTVEELKE 235 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS-----EEEEEETTEEEE-EEEHHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCC-----EEEEEECCEEEE-ecCHHHHHH
Confidence 9999999999999999999999876 3689999999999999885 999999999974 578777653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=350.22 Aligned_cols=221 Identities=23% Similarity=0.312 Sum_probs=165.6
Q ss_pred ceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++||+++|++ .++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++........
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~- 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDEL- 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHH-
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHH-
Confidence 4899999999963 479999999999999999999999999999999999865 467888888877654332211
Q ss_pred HHHHhhHHHHHH-HHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHH--hcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 241 AVVSAHEELVKL-REEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQ--ILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 241 ~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
..+ +..++++.+.... .....+.+++........ .........++.++++.+|+.+...+++
T Consensus 78 ---------~~~~~~~i~~v~Q~~~l------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 142 (235)
T 3tif_A 78 ---------TKIRRDKIGFVFQQFNL------IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142 (235)
T ss_dssp ---------HHHHHHHEEEECTTCCC------CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred ---------HHHhhccEEEEecCCcc------CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC
Confidence 111 2234444332111 111233343332211000 1223455678899999999975445799
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++.+ .+||+|++|++|
T Consensus 143 ~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G 221 (235)
T 3tif_A 143 PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDG 221 (235)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETT
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999988754 68999999999965 789999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .++.+++
T Consensus 222 ~i~~-~~~~~~~ 232 (235)
T 3tif_A 222 EVER-EEKLRGF 232 (235)
T ss_dssp EEEE-EEECC--
T ss_pred EEEE-EcChhhh
Confidence 9974 3544443
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=360.33 Aligned_cols=206 Identities=24% Similarity=0.276 Sum_probs=167.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
.++|+++||+++|++ ..+|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .
T Consensus 5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 358999999999975 35899999999999999999999999999999999999999999998763 1
Q ss_pred eEEEEccccc--cccCccccHHHHHHhh-CCC-----------CCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRL-HPD-----------QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA 626 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkq 626 (723)
.++|++|+.. ..+++.++... .... ... .......+.+.++|+.+||.... ++++.+|||||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLI-GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMK 160 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHG-GGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHH-HHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-CCCchhCCHHHHH
Confidence 4899999742 22333333211 0000 000 00001235678899999997544 4678999999999
Q ss_pred HHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecC
Q 048654 627 RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703 (723)
Q Consensus 627 Rv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~ 703 (723)
||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~i~~-~ 234 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID-----HLYVMFNGQIIA-E 234 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS-----EEEEEETTEEEE-E
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-E
Confidence 999999999999999999999999999999999999876 4699999999999999995 999999999974 5
Q ss_pred CCHHH
Q 048654 704 GTFEE 708 (723)
Q Consensus 704 g~~~~ 708 (723)
|++++
T Consensus 235 g~~~~ 239 (257)
T 1g6h_A 235 GRGEE 239 (257)
T ss_dssp EESHH
T ss_pred eCHHH
Confidence 77777
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=368.89 Aligned_cols=209 Identities=29% Similarity=0.371 Sum_probs=173.0
Q ss_pred CCCeEEEEEEEEEc-CCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------ee
Q 048654 492 TPPLLQLIEVSFSY-PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LR 561 (723)
Q Consensus 492 ~~~~l~~~~ls~~y-~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ 561 (723)
+.++|+++||+++| ++ ..+|+||||+|.+||+++|+||||||||||||+|+|+++|++|+|.+++. ..
T Consensus 11 ~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred CCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 45689999999999 64 35899999999999999999999999999999999999999999998763 25
Q ss_pred EEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
+||++|+. +..+++.++.... +...... .....+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~-l~~~~~~-~~~~~~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFG-LREKRVP-KDEMDARVRELLRFMRLESYA-NRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHH-HHHTTCC-HHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCcccCCCCCHHHHHHHH-HHHcCCC-HHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99999974 3345555554322 2221110 001235688999999997655 46779999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad-----ri~vl~~G~i~~-~g~~~~l~~ 235 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVAD-----RVLVLHEGNVEQ-FGTPEEVYE 235 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999999999988765 4699999999999999995 999999999974 588887654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-42 Score=357.65 Aligned_cols=216 Identities=25% Similarity=0.316 Sum_probs=168.5
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++||++.|+++++|+||||+|++|+++||+||||||||||+++|+|+..| ..|+|.+.++++.......
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~----- 82 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNLNSWQPKA----- 82 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEETTTSCHHH-----
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCCHHH-----
Confidence 479999999999999999999999999999999999999999999999998754 5677888777765433211
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
++..++++.+.... .....+.+++.... ..........++.++++.+|+.. ..++++.+|||
T Consensus 83 --------~~~~i~~v~q~~~~------~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSg 144 (266)
T 4g1u_C 83 --------LARTRAVMRQYSEL------AFPFSVSEVIQMGR---APYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSG 144 (266)
T ss_dssp --------HHHHEEEECSCCCC------CSCCBHHHHHHGGG---TTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCH
T ss_pred --------HhheEEEEecCCcc------CCCCCHHHHHHhhh---hhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCH
Confidence 12223333332111 01112233222110 11123345678899999999974 55799999999
Q ss_pred HHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 324 GWRMRISLARALFV------QPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 324 GqrQRvaLArAL~~------~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
||||||+|||||+. +|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 145 Gq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G 224 (266)
T 4g1u_C 145 GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQG 224 (266)
T ss_dssp HHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 99999999999999 99999999999999999999999988765 359999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .|+.+++
T Consensus 225 ~i~~-~g~~~~~ 235 (266)
T 4g1u_C 225 KLVA-CGTPEEV 235 (266)
T ss_dssp EEEE-EECHHHH
T ss_pred EEEE-EcCHHHH
Confidence 9974 5777665
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=370.63 Aligned_cols=215 Identities=23% Similarity=0.332 Sum_probs=171.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++||+++|++..+|+||||+|++|++++|+||||||||||||+|+|+.. |.+|+|.+.++++.......
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~------ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAE------ 74 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGG------
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHH------
Confidence 5999999999999999999999999999999999999999999999999875 46788888777764332110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
..++++.+.... .....+.+++..... .......+...++.++|+.+|+.. ..++++.+||||
T Consensus 75 ---------r~ig~VfQ~~~l------~p~ltV~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGG 137 (381)
T 3rlf_A 75 ---------RGVGMVFQSYAL------YPHLSVAENMSFGLK-LAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGG 137 (381)
T ss_dssp ---------SCEEEECTTCCC------CTTSCHHHHHTHHHH-HTTCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHH
T ss_pred ---------CCEEEEecCCcC------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHH
Confidence 112233221111 112234444443322 223445566788999999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|
T Consensus 138 qrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g 216 (381)
T 3rlf_A 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VG 216 (381)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-Ee
Confidence 999999999999999999999999999999999988888654 7899999999999999999999999999975 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+..++
T Consensus 217 ~~~~l 221 (381)
T 3rlf_A 217 KPLEL 221 (381)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-42 Score=361.09 Aligned_cols=210 Identities=25% Similarity=0.348 Sum_probs=167.8
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
..++|+++||+++|++ ..+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 18 ~~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV 95 (279)
T ss_dssp -CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH
T ss_pred CCceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH
Confidence 3458999999999975 35899999999999999999999999999999999999999999998762
Q ss_pred -eeEEEEccccccccCccccHHHHHHhhC-C--CCCC-C--cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 560 -LRIGRYSQHFVDLLTMEETPVSYLLRLH-P--DQEG-L--SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 560 -~~ig~~~q~~~~~~~~~~~~~~~~~~~~-~--~~~~-~--~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
..++|++|.....+....++.+.+.... . ...+ . ...+.+.++|+.+||.... ++++.+|||||||||+|||
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqkqRv~lAr 174 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-QQYIGYLSTGEKQRVMIAR 174 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHH
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHH
Confidence 2489999974321111113222221110 0 0000 0 1234678899999997544 4678999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceE--EEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGV--VLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tV--IivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
||+.+|+||||||||+|||+.++..+.++|+++ +.|| |+||||++++..+|| +|++|++|+|+. .|+++
T Consensus 175 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~ 248 (279)
T 2ihy_A 175 ALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS-----KILLLKDGQSIQ-QGAVE 248 (279)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCC-----EEEEEETTEEEE-EEEHH
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-ECCHH
Confidence 999999999999999999999999999999876 4689 999999999998885 999999999974 57887
Q ss_pred HHH
Q 048654 708 EYK 710 (723)
Q Consensus 708 ~~~ 710 (723)
++.
T Consensus 249 ~~~ 251 (279)
T 2ihy_A 249 DIL 251 (279)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=349.68 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=164.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
||+++||+++|++ +|+||||+|++ ++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 4789999999963 49999999999 999999999999999999999999999999998763 248999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
+|+.. ..+++.++ +. +.....+. ...+.+.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+|||
T Consensus 76 ~q~~~l~~~ltv~en----l~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~lAral~~~p~lll 149 (240)
T 2onk_A 76 PQDYALFPHLSVYRN----IA-YGLRNVERVERDRRVREMAEKLGIAHLL-DRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp CSSCCCCTTSCHHHH----HH-TTCTTSCHHHHHHHHHHHHHTTTCTTTT-TCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred cCCCccCCCCcHHHH----HH-HHHHHcCCchHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99742 22233222 21 11111111 1235678899999997654 46779999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++..
T Consensus 150 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~~ 216 (240)
T 2onk_A 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD-----EVAVMLNGRIVE-KGKLKELFS 216 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999876 4689999999999999995 999999999974 578877643
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=367.96 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=171.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++||+++|++ ..+|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++++ ..+||+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 5899999999975 35899999999999999999999999999999999999999999998763 259999
Q ss_pred cccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|+. +..+++.++.... +...... .....+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+||||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~-~~~~~~~-~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFP-LELRKAP-REEIDKKVREVAKMLHIDKLL-NRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHH-HHHTTCC-HHHHHHHHHHHHHHTTCTTCT-TCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ecCcccCCCCCHHHHHHHH-HHhcCCC-HHHHHHHHHHHHHHcCCchHh-hCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9974 3345555554322 2221110 001235688999999998655 467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad-----ri~vl~~G~i~~-~g~~~~~~~ 223 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD-----RIAVIREGEILQ-VGTPDEVYY 223 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999998775 4699999999999999995 999999999974 588887654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=350.93 Aligned_cols=219 Identities=24% Similarity=0.354 Sum_probs=168.8
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.+.+|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.++++.. ...
T Consensus 12 ~~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~-~~~---- 84 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVE-EPH---- 84 (256)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTT-CHH----
T ss_pred cCCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCc-cHH----
Confidence 4668999999999999999999999999999999999999999999999999865 457788877765532 110
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
.++..++++.+.... .....+.+++.... .+..........++.++|+.+|+.. ..++++.+|
T Consensus 85 ---------~~~~~i~~v~q~~~l------~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~L 147 (256)
T 1vpl_A 85 ---------EVRKLISYLPEEAGA------YRNMQGIEYLRFVA-GFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTY 147 (256)
T ss_dssp ---------HHHTTEEEECTTCCC------CTTSBHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGC
T ss_pred ---------HHhhcEEEEcCCCCC------CCCCcHHHHHHHHH-HHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhC
Confidence 112233444332111 11123334433221 1222223334567889999999974 457899999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 148 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~- 226 (256)
T 1vpl_A 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE- 226 (256)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-
Confidence 999999999999999999999999999999999999999998765 6799999999999999999999999999974
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
.|+.+++
T Consensus 227 ~g~~~~~ 233 (256)
T 1vpl_A 227 TGTVEEL 233 (256)
T ss_dssp EEEHHHH
T ss_pred ecCHHHH
Confidence 4766554
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=354.49 Aligned_cols=209 Identities=29% Similarity=0.373 Sum_probs=167.7
Q ss_pred eEEEEEEEEEcC-CCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------eeEE
Q 048654 495 LLQLIEVSFSYP-NRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~-~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------~~ig 563 (723)
+|+++||+++|+ +.. ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 689999999997 221 35899999999999999999999999999999999999999999999873 2589
Q ss_pred EEccccccccCccccHHHHHHhhCCC-CCCCcHHHHHHHHHHhCCCC--CCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPD-QEGLSKQEAVRAKLGKFGLP--SHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~gl~--~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
|++|+....+. ..++.+.+...... .......+.+.++++.+||. ... ++++.+|||||||||+|||||+.+|+|
T Consensus 82 ~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 82 IAFQYPEDQFF-AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK-DRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EECSSGGGGCC-CSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHT-TCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeccchhhcC-CCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccc-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99997421111 12322222111100 11111245688999999997 544 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++..
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~~ 227 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVD-----RVVVLEKGKKVF-DGTRMEFLE 227 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCS-----EEEEEETTEEEE-EEEHHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999876 3689999999999998995 999999999974 577776643
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=355.07 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=166.7
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
++|+++||+++|+++++|+||||+|++|++++|+||||||||||+|+|+|+.. |..|+|.+.++++.......
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~----- 78 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAE----- 78 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHH-----
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHH-----
Confidence 46999999999999999999999999999999999999999999999999865 45788888777654322110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH-HHh-----------cCchHHHHHHHHHHHhCCCCc
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK-LQI-----------LGSDAAEAQASKILAGLGFTK 311 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-----------~~~~~~~~~~~~~L~~lgl~~ 311 (723)
..+..++++.+.... .....+.+++...... ... ........++.++|+.+|+.
T Consensus 79 -------~~~~~i~~v~q~~~l------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~- 144 (257)
T 1g6h_A 79 -------LYHYGIVRTFQTPQP------LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS- 144 (257)
T ss_dssp -------HHHHTEEECCCCCGG------GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-
T ss_pred -------HHhCCEEEEccCCcc------CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-
Confidence 112223333221100 0111223332211000 000 12234457789999999996
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEE
Q 048654 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 312 ~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii 388 (723)
...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|+
T Consensus 145 ~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~ 224 (257)
T 1g6h_A 145 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 224 (257)
T ss_dssp GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEE
T ss_pred hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 4568999999999999999999999999999999999999999999999998765 6899999999999999999999
Q ss_pred EEeCCEEEEecCChhh
Q 048654 389 HLHDQKLHFYRGNFDD 404 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~ 404 (723)
+|++|+++. .|+.++
T Consensus 225 ~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 225 VMFNGQIIA-EGRGEE 239 (257)
T ss_dssp EEETTEEEE-EEESHH
T ss_pred EEECCEEEE-EeCHHH
Confidence 999999974 466555
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=365.20 Aligned_cols=201 Identities=25% Similarity=0.373 Sum_probs=169.8
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
||+++||+++|++ . +|++|||+|++|++++|+||||||||||||+|+|+++|++|+|.++++ ..+||+
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 5899999999974 3 899999999999999999999999999999999999999999998874 248999
Q ss_pred cccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|+. +..+++.++.... +...... .. +++.++|+.++|.+... +++.+|||||||||+|||||+.+|+||||
T Consensus 78 ~Q~~~l~~~ltv~enl~~~-~~~~~~~---~~-~~v~~~l~~~~L~~~~~-~~~~~LSgGq~QRvalAraL~~~P~lLLL 151 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFG-MRMKKIK---DP-KRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVALARALVTNPKILLL 151 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHH-HHHHCCC---CH-HHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred ecCcccCCCCCHHHHHHHH-HHHcCCC---HH-HHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9974 3445565554322 2211111 12 67889999999986554 66799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++.
T Consensus 152 DEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad-----ri~vl~~G~i~~-~g~~~~~~ 216 (348)
T 3d31_A 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD-----RIAVVMDGKLIQ-VGKPEEIF 216 (348)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS-----EEEEESSSCEEE-EECHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999998775 4699999999999999995 999999999974 58887764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=367.63 Aligned_cols=219 Identities=23% Similarity=0.281 Sum_probs=167.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++||+++|+||||||||||||+|+|+.. |.+|+|.+.++++.......
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~------ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNL------ 75 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBC------
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECccccccc------
Confidence 5999999999999999999999999999999999999999999999999865 46788888887763211000
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
+ ..+..++++.+.... .....+.+++..... .......+..+++.++|+.+||. ...++++.+||||
T Consensus 76 --~---~~~r~ig~vfQ~~~l------~p~ltV~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGG 142 (359)
T 3fvq_A 76 --P---VRERRLGYLVQEGVL------FPHLTVYRNIAYGLG-NGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGG 142 (359)
T ss_dssp --C---GGGSCCEEECTTCCC------CTTSCHHHHHHTTST-TSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHH
T ss_pred --c---hhhCCEEEEeCCCcC------CCCCCHHHHHHHHHH-HcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHH
Confidence 0 001122333221110 112233333322111 11123455678899999999997 4568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC----RWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~----~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|. +.+.|||+||||++++..+||||++|++|+|+. .|
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g 221 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TA 221 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-Ee
Confidence 9999999999999999999999999999999988876554 347899999999999999999999999999974 57
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 222 ~~~el 226 (359)
T 3fvq_A 222 SPHEL 226 (359)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 77665
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=365.25 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=168.9
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++||+++|++ ..+|++|||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 5899999999975 35899999999999999999999999999999999999999999998763 259999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCCcH---HHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLSK---QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|+.. ..+++.++.. +.....+... .+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+|
T Consensus 81 ~Q~~~l~~~ltv~eni~-----~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSgGq~QRvalArAL~~~P~l 154 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIA-----FPLRARRISKDEVEKRVVEIARKLLIDNLL-DRKPTQLSGGQQQRVALARALVKQPKV 154 (359)
T ss_dssp CSSCCCCTTSCHHHHHH-----GGGSSSCSHHHHTTHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred ecCcccCCCCCHHHHHH-----HHHHhcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99742 3344444421 1111111111 24688999999997655 466799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad-----ri~vl~~G~i~~-~g~~~~l~~ 223 (359)
T 2yyz_A 155 LLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS-----RIAVFNQGKLVQ-YGTPDEVYD 223 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999988775 4699999999999999995 999999999974 588887654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=367.59 Aligned_cols=206 Identities=24% Similarity=0.353 Sum_probs=170.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------- 559 (723)
+|+++||+++|++ ..+|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 6899999999975 35899999999999999999999999999999999999999999987652
Q ss_pred eeEEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 560 LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 560 ~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
..+||++|+. +..+++.++.... +...... .....+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~-~~~~~~~-~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFP-LKLRKVP-RQEIDQRVREVAELLGLTELL-NRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHH-HHHTTCC-HHHHHHHHHHHHHHHTCGGGT-TCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHH-HHHcCCC-HHHHHHHHHHHHHHCCCchHh-cCCcccCCHHHHHHHHHHHHHhcC
Confidence 2489999974 3345555553322 2221110 001235688999999997654 467799999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad-----ri~vl~~G~i~~-~g~~~~l~~ 229 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGD-----RIAVMNRGVLQQ-VGSPDEVYD 229 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCC-----EEEEEeCCEEEE-eCCHHHHHh
Confidence 9999999999999999999999988765 4699999999999999995 999999999974 588887654
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=349.19 Aligned_cols=226 Identities=20% Similarity=0.246 Sum_probs=166.3
Q ss_pred CCccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 161 ANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 161 ~~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
...++|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+....|..|+|.+.+.++........
T Consensus 16 ~~~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~- 94 (267)
T 2zu0_C 16 RGSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR- 94 (267)
T ss_dssp ----CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH-
T ss_pred CCCceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH-
Confidence 3445799999999999999999999999999999999999999999999999974334667888887776543221110
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHH---h---cCchHHHHHHHHHHHhCCCCcccc
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQ---I---LGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~---~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
.+..++++.+.... .....+.+.+......+. . ........++.++|+.+|+.....
T Consensus 95 -----------~~~~i~~v~Q~~~l------~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 157 (267)
T 2zu0_C 95 -----------AGEGIFMAFQYPVE------IPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLL 157 (267)
T ss_dssp -----------HHHTEEEECSSCCC------CTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT
T ss_pred -----------hhCCEEEEccCccc------cccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHh
Confidence 01112233221111 011122233322221111 1 112334567899999999964445
Q ss_pred CCCCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhh-CCEEEE
Q 048654 315 GRPTK-SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTV-CTEIIH 389 (723)
Q Consensus 315 ~~~~~-~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~i-ad~Ii~ 389 (723)
++++. +|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+ ||+|++
T Consensus 158 ~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~ 237 (267)
T 2zu0_C 158 TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV 237 (267)
T ss_dssp TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEE
T ss_pred cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEE
Confidence 78887 59999999999999999999999999999999999999999999876 57999999999999886 999999
Q ss_pred EeCCEEEEecCChhhH
Q 048654 390 LHDQKLHFYRGNFDDF 405 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~ 405 (723)
|++|+++. .|+.+++
T Consensus 238 l~~G~i~~-~g~~~~~ 252 (267)
T 2zu0_C 238 LYQGRIVK-SGDFTLV 252 (267)
T ss_dssp EETTEEEE-EECTTHH
T ss_pred EECCEEEE-EcCHHHH
Confidence 99999974 4666543
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=345.72 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=165.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++.......
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~------ 77 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHV------ 77 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHH------
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHH------
Confidence 6999999999999999999999999999999999999999999999999865 46788888777654322110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC-CCccccCCCCCCCCh
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLG-FTKEMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lg-l~~~~~~~~~~~LSG 323 (723)
..+..++++.+.... .....+.+++.... ...........++.++++.++ +.. ..++++.+|||
T Consensus 78 ------~~~~~i~~v~q~~~l------~~~ltv~enl~~~~--~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LSg 142 (240)
T 1ji0_A 78 ------INRMGIALVPEGRRI------FPELTVYENLMMGA--YNRKDKEGIKRDLEWIFSLFPRLKE-RLKQLGGTLSG 142 (240)
T ss_dssp ------HHHTTEEEECSSCCC------CTTSBHHHHHHGGG--TTCCCSSHHHHHHHHHHHHCHHHHT-TTTSBSSSSCH
T ss_pred ------HHhCCEEEEecCCcc------CCCCcHHHHHHHhh--hcCCCHHHHHHHHHHHHHHcccHhh-HhcCChhhCCH
Confidence 011123333332111 11112333332110 001123345567888999994 853 45789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 143 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g 221 (240)
T 1ji0_A 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EG 221 (240)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-Ec
Confidence 9999999999999999999999999999999999999998765 5799999999999999999999999999974 46
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+++
T Consensus 222 ~~~~~ 226 (240)
T 1ji0_A 222 KASEL 226 (240)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 66555
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=367.15 Aligned_cols=203 Identities=28% Similarity=0.391 Sum_probs=168.5
Q ss_pred eEEEEEEEEEcCCCccc--ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNREDF--KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~--~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+|+++||+++|++ .. +|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++++
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 6899999999974 35 899999999999999999999999999999999999999999987652
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..+||++|+.. ..+++.++.. +.+. ..+.. ..+++.++|+.+||.+.. ++++.+|||||||||+||||
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~-~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIA-FPLT----NMKMSKEEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHH-GGGT----TSSCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHH-HHHH----HcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHH
Confidence 24899999742 3344444421 1111 11111 235688999999997654 46779999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad-----ri~vl~~G~i~~-~g~~~~l 228 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIAD-----RVGVLVKGKLVQ-VGKPEDL 228 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999999998765 4699999999999999995 999999999974 5888876
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
..
T Consensus 229 ~~ 230 (353)
T 1oxx_K 229 YD 230 (353)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=364.58 Aligned_cols=203 Identities=24% Similarity=0.331 Sum_probs=167.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++||+++|++ ..+|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++++ ..+||+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 6999999999975 35899999999999999999999999999999999999999999998763 259999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|+.. ..+++.++. . +.....+.. ..+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+|
T Consensus 89 ~Q~~~l~~~ltv~eni----~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~P~l 162 (372)
T 1v43_A 89 FQSYAVWPHMTVYENI----A-FPLKIKKFPKDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDV 162 (372)
T ss_dssp EC------CCCHHHHH----H-TTCC--CCCHHHHHHHHHHHHHHTTCGGGT-TSCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred ecCcccCCCCCHHHHH----H-HHHHhcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99742 334444432 1 111111111 234688999999997655 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 163 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad-----ri~vl~~G~i~~-~g~~~~l~~ 231 (372)
T 1v43_A 163 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD-----RIAVMNRGQLLQ-IGSPTEVYL 231 (372)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999988775 4699999999999999995 999999999974 588887654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=362.13 Aligned_cols=215 Identities=25% Similarity=0.310 Sum_probs=169.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++++......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~------- 73 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPK------- 73 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGG-------
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHh-------
Confidence 5899999999998899999999999999999999999999999999999865 4678888877766432211
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++++.+.... .....+.+++..... .......+..+++.++|+.+|+.+ ..++++.+||||
T Consensus 74 --------~r~ig~v~Q~~~l------~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGG 137 (362)
T 2it1_A 74 --------DRNVGLVFQNWAL------YPHMTVYKNIAFPLE-LRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGG 137 (362)
T ss_dssp --------GTTEEEECTTCCC------CTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHH
T ss_pred --------HCcEEEEecCccc------CCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHH
Confidence 0122333221111 112234444433221 122333455678999999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g 216 (362)
T 2it1_A 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VG 216 (362)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-Ec
Confidence 999999999999999999999999999999999998888754 6899999999999999999999999999974 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 217 ~~~~~ 221 (362)
T 2it1_A 217 TPDEV 221 (362)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76655
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=346.40 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=165.0
Q ss_pred CeEEEEEEEEEcC-CCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccccc-
Q 048654 494 PLLQLIEVSFSYP-NREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVD- 571 (723)
Q Consensus 494 ~~l~~~~ls~~y~-~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~- 571 (723)
++|+++||+++|+ + ..+|++|||+|.+|++++|+||||||||||+++|+|+++|++|+|.+. ..++|++|....
T Consensus 3 ~~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~~~ 78 (253)
T 2nq2_C 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFSSP 78 (253)
T ss_dssp EEEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCCCS
T ss_pred ceEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCccC
Confidence 3799999999997 4 358999999999999999999999999999999999999999999843 359999997422
Q ss_pred -ccCccccHHHHHHhhCCCC---CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCC
Q 048654 572 -LLTMEETPVSYLLRLHPDQ---EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647 (723)
Q Consensus 572 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT 647 (723)
.+++.++... ........ ......+.+.++++.+||.... ++++.+|||||||||+|||||+.+|+||||||||
T Consensus 79 ~~~tv~enl~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 79 FAYSVLDIVLM-GRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-KREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp SCCBHHHHHHG-GGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred CCCCHHHHHHH-hhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2233333211 01000000 0111235678899999997554 4677999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 648 NHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 648 ~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+|||+.++..+.+.|.++ +.|||+||||++++..+|| +|++|++|+ + +.|+++++.
T Consensus 157 s~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIAN-----KTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCS-----EEEEEETTE-E-EEEEHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEEeCCe-E-ecCCHHHHh
Confidence 999999999999999876 4689999999999999995 999999999 6 457777763
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=345.77 Aligned_cols=220 Identities=21% Similarity=0.248 Sum_probs=161.1
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||+++|+|+....|..|+|.+.+.++........
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~----- 77 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER----- 77 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHH-----
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHH-----
Confidence 589999999999999999999999999999999999999999999999973224567888887776543221110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhCCCCccccCCCCCC-C
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL--GSDAAEAQASKILAGLGFTKEMQGRPTKS-F 321 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~-L 321 (723)
.+..++++.+.... .....+.+.+.......... .......++.++|+.+|+.....++++.+ |
T Consensus 78 -------~~~~i~~v~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 144 (250)
T 2d2e_A 78 -------ARKGLFLAFQYPVE------VPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGF 144 (250)
T ss_dssp -------HHTTBCCCCCCCC-------CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC-
T ss_pred -------HhCcEEEeccCCcc------ccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 01112222221110 11112333332221111111 22334567889999999953456788999 9
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhh-CCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTV-CTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~i-ad~Ii~L~~G~i~~ 397 (723)
||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+ ||+|++|++|+++.
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999875 57999999999999988 59999999999974
Q ss_pred ecCChh
Q 048654 398 YRGNFD 403 (723)
Q Consensus 398 ~~g~~~ 403 (723)
.|+.+
T Consensus 225 -~g~~~ 229 (250)
T 2d2e_A 225 -TGGPE 229 (250)
T ss_dssp -EESHH
T ss_pred -EeCHH
Confidence 46654
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=361.04 Aligned_cols=218 Identities=23% Similarity=0.325 Sum_probs=170.2
Q ss_pred CccceEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 162 NVKDITIDNFSVAA-RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 162 ~~~~I~l~nls~~y-~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
...+|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|+.. |.+|+|.+.++++......
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~--- 85 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQ--- 85 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGG---
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChh---
Confidence 44579999999999 88889999999999999999999999999999999999865 4678888877765432110
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+..++++.+.... .....+.+++..... .......+...++.++|+.+||. ...++++.+
T Consensus 86 ------------~r~ig~v~Q~~~l------~~~ltv~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~ 145 (355)
T 1z47_A 86 ------------KRNVGLVFQNYAL------FQHMTVYDNVSFGLR-EKRVPKDEMDARVRELLRFMRLE-SYANRFPHE 145 (355)
T ss_dssp ------------GSSEEEECGGGCC------CTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGG
T ss_pred ------------hCcEEEEecCccc------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCh-hHhcCCccc
Confidence 0112222221110 112233444433221 12233345567899999999996 456899999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||||||+|||||+.+|+||||||||++||+..+..+.++|+++ +.|||+||||++++..+||+|++|++|+++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998888654 689999999999999999999999999997
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+++++
T Consensus 226 ~-~g~~~~l 233 (355)
T 1z47_A 226 Q-FGTPEEV 233 (355)
T ss_dssp E-EECHHHH
T ss_pred E-EcCHHHH
Confidence 4 4776655
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=361.77 Aligned_cols=215 Identities=21% Similarity=0.318 Sum_probs=168.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecC------CChHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVG------DDRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~------~~~~~ 238 (723)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++.+.. ....
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~- 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPK- 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGG-
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHh-
Confidence 5899999999999999999999999999999999999999999999999865 467888887766532 1110
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
...++++.+.... .....+.+++..... ...........++.++|+.+||.+ ..++++
T Consensus 80 --------------~r~ig~v~Q~~~l------~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~ 137 (372)
T 1g29_1 80 --------------DRDIAMVFQSYAL------YPHMTVYDNIAFPLK-LRKVPRQEIDQRVREVAELLGLTE-LLNRKP 137 (372)
T ss_dssp --------------GSSEEEECSCCCC------CTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHTCGG-GTTCCG
T ss_pred --------------HCCEEEEeCCCcc------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCch-HhcCCc
Confidence 0122333221111 112234444433221 122333455678999999999964 568999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 138 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~ 217 (372)
T 1g29_1 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217 (372)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999998888654 6899999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|++.++
T Consensus 218 i~~-~g~~~~l 227 (372)
T 1g29_1 218 LQQ-VGSPDEV 227 (372)
T ss_dssp EEE-EECHHHH
T ss_pred EEE-eCCHHHH
Confidence 974 4777655
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-41 Score=362.51 Aligned_cols=215 Identities=25% Similarity=0.297 Sum_probs=166.2
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++++......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~------- 73 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPK------- 73 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGG-------
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChh-------
Confidence 5899999999999999999999999999999999999999999999999865 4678888877766432211
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++++.+.... .....+.+++..... .......+..+++.++|+.+|+.+ ..++++.+||||
T Consensus 74 --------~r~ig~v~Q~~~l------~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSgG 137 (359)
T 2yyz_A 74 --------YREVGMVFQNYAL------YPHMTVFENIAFPLR-ARRISKDEVEKRVVEIARKLLIDN-LLDRKPTQLSGG 137 (359)
T ss_dssp --------GTTEEEECSSCCC------CTTSCHHHHHHGGGS-SSCSHHHHTTHHHHHHHHHTTCGG-GTTSCGGGSCHH
T ss_pred --------hCcEEEEecCccc------CCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHH
Confidence 0122333221111 112233333322110 000111233567899999999964 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g 216 (359)
T 2yyz_A 138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YG 216 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eC
Confidence 999999999999999999999999999999999998888654 6899999999999999999999999999974 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 217 ~~~~l 221 (359)
T 2yyz_A 217 TPDEV 221 (359)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76654
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=348.83 Aligned_cols=210 Identities=25% Similarity=0.367 Sum_probs=164.4
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCcceEEECCce---------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD--LSPTEGEVRRSQKL--------- 560 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl--~~p~~G~I~~~~~~--------- 560 (723)
..++|+++||+++|++ ..+|+||||+|.+|++++|+|||||||||||++|+|+ ++|++|+|.+++..
T Consensus 17 ~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp ---CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred CCceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 3568999999999975 3589999999999999999999999999999999999 46899999987631
Q ss_pred ---eEEEEccccc--cccCccccHHHHH--Hh-hCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCC-CCCHHHHHHH
Q 048654 561 ---RIGRYSQHFV--DLLTMEETPVSYL--LR-LHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIA-KLSGGQKARV 628 (723)
Q Consensus 561 ---~ig~~~q~~~--~~~~~~~~~~~~~--~~-~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~-~LSGGqkqRv 628 (723)
.++|++|... ..+++.++..... .. .+.. .... ..+.+.++|+.+||.....++++. +|||||||||
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ-ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 173 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGC-CCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhcc-ccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 3899999742 2233333321111 11 0110 0111 134578899999996433446666 5999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHh-cCcCCCcEEEEEECCeEEecCC
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRV-CDDEERSEIWVVENGTVSRFPG 704 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~-~d~~~~drv~vl~~G~i~~~~g 704 (723)
+|||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+ | |+|++|++|+++. .|
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~-----d~v~~l~~G~i~~-~g 247 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKP-----DYVHVLYQGRIVK-SG 247 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCC-----SEEEEEETTEEEE-EE
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcC-----CEEEEEECCEEEE-Ec
Confidence 99999999999999999999999999999999999873 5899999999999876 7 4999999999974 57
Q ss_pred CHHHHH
Q 048654 705 TFEEYK 710 (723)
Q Consensus 705 ~~~~~~ 710 (723)
+++++.
T Consensus 248 ~~~~~~ 253 (267)
T 2zu0_C 248 DFTLVK 253 (267)
T ss_dssp CTTHHH
T ss_pred CHHHHh
Confidence 777653
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=348.49 Aligned_cols=201 Identities=24% Similarity=0.390 Sum_probs=167.3
Q ss_pred eEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------eeEE-
Q 048654 495 LLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------LRIG- 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------~~ig- 563 (723)
||+++||+++|++. ...+|++|||+|+ |++++|+|||||||||||++|+|++ |++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 58999999999741 1358999999999 9999999999999999999999999 99999998773 2589
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCC-CCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP-SHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~-~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
|++|.....+++.++.... ...+ . ...+.+.++++.+||. ... .+++.+|||||||||+|||||+.+|+|||
T Consensus 79 ~v~Q~~~l~~tv~enl~~~-~~~~-~----~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lll 151 (263)
T 2pjz_A 79 NLPEAYEIGVTVNDIVYLY-EELK-G----LDRDLFLEMLKALKLGEEIL-RRKLYKLSAGQSVLVRTSLALASQPEIVG 151 (263)
T ss_dssp CCGGGSCTTSBHHHHHHHH-HHHT-C----CCHHHHHHHHHHTTCCGGGG-GSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EeCCCCccCCcHHHHHHHh-hhhc-c----hHHHHHHHHHHHcCCChhHh-cCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999753233343332211 1111 1 1245688999999997 544 46789999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCc-EEEEEECCeEEecCCCHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERS-EIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~d-rv~vl~~G~i~~~~g~~~~~~ 710 (723)
|||||+|||+.++..+.+.|+++..|||+||||++++..+| | ++++|++|+++. .|+++++.
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~-----d~~i~~l~~G~i~~-~g~~~~l~ 214 (263)
T 2pjz_A 152 LDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYK-----EYKAYFLVGNRLQG-PISVSELL 214 (263)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCT-----TSEEEEEETTEEEE-EEEHHHHH
T ss_pred EECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhc-----CceEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999999998669999999999998888 7 999999999974 57887764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=342.92 Aligned_cols=203 Identities=25% Similarity=0.375 Sum_probs=160.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
-|+++||+++|++....+|++|||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 47899999999321245899999999999999999999999999999999999999999998763 2489
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCC----------CcCCCCCCCHHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHN----------HLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~i~~LSGGqkqRv~lAra 633 (723)
|++|...- +. .++.+.+. +... .. ..+.+..+++.+++.... ..+++.+|||||||||+||||
T Consensus 87 ~v~Q~~~l-~~--~tv~enl~-~~~~--~~-~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAra 159 (247)
T 2ff7_A 87 VVLQDNVL-LN--RSIIDNIS-LANP--GM-SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 159 (247)
T ss_dssp EECSSCCC-TT--SBHHHHHT-TTCT--TC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHH
T ss_pred EEeCCCcc-cc--ccHHHHHh-ccCC--CC-CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHH
Confidence 99997531 21 24444332 2111 11 234455666666653211 124568999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|+||||||||++||+.+...+.++|+++ +.|||+||||++++. .| |+|++|++|+++. .|+++++..
T Consensus 160 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~-----d~v~~l~~G~i~~-~g~~~~l~~ 232 (247)
T 2ff7_A 160 LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NA-----DRIIVMEKGKIVE-QGKHKELLS 232 (247)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TS-----SEEEEEETTEEEE-EECHHHHHT
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hC-----CEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999887 469999999999885 47 4999999999974 578777643
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=361.22 Aligned_cols=217 Identities=23% Similarity=0.307 Sum_probs=166.1
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
|.+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++.+.......
T Consensus 9 M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~---- 82 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKD---- 82 (372)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGG----
T ss_pred eeeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhh----
Confidence 346999999999999999999999999999999999999999999999999865 46788888777664322110
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
..++++.+.... .....+.+++.... ............++.++|+.+||. ...++++.+||
T Consensus 83 -----------r~ig~v~Q~~~l------~~~ltv~eni~~~~-~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LS 143 (372)
T 1v43_A 83 -----------RNISMVFQSYAV------WPHMTVYENIAFPL-KIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLS 143 (372)
T ss_dssp -----------GTEEEEEC------------CCCHHHHHHTTC-C--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCC
T ss_pred -----------CcEEEEecCccc------CCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCC
Confidence 111222111000 00112223222110 011122344567899999999997 45689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 144 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~- 222 (372)
T 1v43_A 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ- 222 (372)
T ss_dssp SSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-
Confidence 99999999999999999999999999999999999998888754 6899999999999999999999999999974
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
.|+++++
T Consensus 223 ~g~~~~l 229 (372)
T 1v43_A 223 IGSPTEV 229 (372)
T ss_dssp EECHHHH
T ss_pred eCCHHHH
Confidence 4776655
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=346.56 Aligned_cols=205 Identities=24% Similarity=0.311 Sum_probs=159.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCcceEEECCce------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD--LSPTEGEVRRSQKL------------ 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl--~~p~~G~I~~~~~~------------ 560 (723)
+|+++||+++|++ ..+|+||||+|.+|++++|+||||||||||+++|+|+ ++|++|+|.+++..
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 7999999999975 3589999999999999999999999999999999999 78999999987631
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCC-cHHHHHHHHHHhCCCCCCCCcCCCCC-CCHHHHHHHHHHHHHcc
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGL-SKQEAVRAKLGKFGLPSHNHLTPIAK-LSGGQKARVVFTSISMS 636 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~-LSGGqkqRv~lAral~~ 636 (723)
.++|++|... ..+++.++............... ...+.+.++|+.+||.....++++.+ |||||||||+|||||+.
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 2678888642 22344343221111111100000 12345788999999953334567788 99999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHh-cCcCCCcEEEEEECCeEEecCCCHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRV-CDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~-~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+ || +|++|++|+++. .|+++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d-----~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPD-----KVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCS-----EEEEEETTEEEE-EESHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCC-----EEEEEECCEEEE-EeCHH
Confidence 999999999999999999999999998873 5899999999999887 44 999999999974 57776
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=344.92 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=163.6
Q ss_pred CCeEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------e
Q 048654 493 PPLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~ 560 (723)
..+|+++||+++|++. ...+|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 3579999999999751 235899999999999999999999999999999999999999999998773 2
Q ss_pred eEEEEccccccccCccccHHHHHHhhCCCCCCC-cH------HHHHHHHHHhC--CCCCCCCcCCCCCCCHHHHHHHHHH
Q 048654 561 RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL-SK------QEAVRAKLGKF--GLPSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 561 ~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~L~~~--gl~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
.++|++|... .+. .++.+.+...... ... .. ...+.+++..+ |+.... .+++.+|||||||||+||
T Consensus 94 ~i~~v~Q~~~-l~~--~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 94 QVAAVGQEPL-LFG--RSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDTEV-GETGNQLSGGQRQAVALA 168 (271)
T ss_dssp HEEEECSSCC-CCS--SBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBC-CGGGTTSCHHHHHHHHHH
T ss_pred cEEEEecCCc-ccc--ccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhhhh-cCCcCCCCHHHHHHHHHH
Confidence 4899999752 121 2433333221111 111 01 01234567777 676544 456799999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||+.+|+||||||||++||+.++..|.++|.++. .|||+||||++++. .| |+|++|++|+|+. .|+++
T Consensus 169 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~-----d~v~~l~~G~i~~-~g~~~ 241 (271)
T 2ixe_A 169 RALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RA-----HHILFLKEGSVCE-QGTHL 241 (271)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TC-----SEEEEEETTEEEE-EECHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hC-----CEEEEEECCEEEE-ECCHH
Confidence 99999999999999999999999999999999873 58999999999986 47 4999999999974 58887
Q ss_pred HHHH
Q 048654 708 EYKE 711 (723)
Q Consensus 708 ~~~~ 711 (723)
++..
T Consensus 242 ~l~~ 245 (271)
T 2ixe_A 242 QLME 245 (271)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=355.40 Aligned_cols=211 Identities=25% Similarity=0.349 Sum_probs=165.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++ +|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++.+.....
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~-------- 69 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSP-------- 69 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCH--------
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCch--------
Confidence 38899999999988 9999999999999999999999999999999999865 467888887776543111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.+..++++.+.... .....+.+++..... ....... .++.++|+.+|+.. ..++++.+||||
T Consensus 70 -------~~r~ig~v~Q~~~l------~~~ltv~enl~~~~~-~~~~~~~---~~v~~~l~~~~L~~-~~~~~~~~LSgG 131 (348)
T 3d31_A 70 -------EKHDIAFVYQNYSL------FPHMNVKKNLEFGMR-MKKIKDP---KRVLDTARDLKIEH-LLDRNPLTLSGG 131 (348)
T ss_dssp -------HHHTCEEECTTCCC------CTTSCHHHHHHHHHH-HHCCCCH---HHHHHHHHHTTCTT-TTTSCGGGSCHH
T ss_pred -------hhCcEEEEecCccc------CCCCCHHHHHHHHHH-HcCCCHH---HHHHHHHHHcCCch-HhcCChhhCCHH
Confidence 11233443322111 112234444433221 1112222 77899999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 132 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g 210 (348)
T 3d31_A 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VG 210 (348)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EC
Confidence 999999999999999999999999999999999998888754 6899999999999999999999999999974 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 211 ~~~~~ 215 (348)
T 3d31_A 211 KPEEI 215 (348)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=349.79 Aligned_cols=223 Identities=25% Similarity=0.279 Sum_probs=164.2
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeec--CCChHHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV--GDDRSAI 239 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~--~~~~~~~ 239 (723)
..++|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++. ......
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~- 94 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAET- 94 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHH-
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHH-
Confidence 3346999999999999999999999999999999999999999999999999865 45778887776543 111111
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHH---HHHhcCchHHHHHHHHHHHhCCCCccccCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE---KLQILGSDAAEAQASKILAGLGFTKEMQGR 316 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 316 (723)
++..++++.+...... .....+.+++..... .+..........++.++|+.+|+. ...++
T Consensus 95 ------------~~~~i~~v~Q~~~~~~----~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~ 157 (279)
T 2ihy_A 95 ------------VRQHIGFVSHSLLEKF----QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQ 157 (279)
T ss_dssp ------------HHTTEEEECHHHHTTS----CTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTS
T ss_pred ------------HcCcEEEEEcCccccc----CCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcC
Confidence 1111222211100000 000122222211100 000111233456788999999996 45589
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEE--EEEeCCHHHHHhhCCEEEEEe
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTL--VVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TV--IivsHdl~~l~~iad~Ii~L~ 391 (723)
++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|| |+||||++++..+||+|++|+
T Consensus 158 ~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 158 YIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLK 237 (279)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999998765 6799 999999999999999999999
Q ss_pred CCEEEEecCChhhH
Q 048654 392 DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 ~G~i~~~~g~~~~~ 405 (723)
+|+++. .|+++++
T Consensus 238 ~G~i~~-~g~~~~~ 250 (279)
T 2ihy_A 238 DGQSIQ-QGAVEDI 250 (279)
T ss_dssp TTEEEE-EEEHHHH
T ss_pred CCEEEE-ECCHHHH
Confidence 999974 5776554
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=361.19 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=166.3
Q ss_pred ceEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC---hHHH
Q 048654 165 DITIDNFSVAARGKE--LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD---RSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~~~--vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~---~~~~ 239 (723)
+|+++||+++|++++ +|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++++.... ...
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~- 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPP- 79 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCG-
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCCh-
Confidence 599999999999888 9999999999999999999999999999999999865 46778888776653210 000
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
.+..++++.+.... .....+.+++..... ...........++.++|+.+||.+ ..++++.
T Consensus 80 ------------~~r~ig~v~Q~~~l------~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~ 139 (353)
T 1oxx_K 80 ------------EDRKIGMVFQTWAL------YPNLTAFENIAFPLT-NMKMSKEEIRKRVEEVAKILDIHH-VLNHFPR 139 (353)
T ss_dssp ------------GGSCEEEEETTSCC------CTTSCHHHHHHGGGT-TSSCCHHHHHHHHHHHHHHTTCGG-GTTSCGG
T ss_pred ------------hhCCEEEEeCCCcc------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-HhcCChh
Confidence 01112233221110 111233333322110 011223445678999999999964 5689999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 140 ~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219 (353)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999998888654 68999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+++++
T Consensus 220 ~~-~g~~~~l 228 (353)
T 1oxx_K 220 VQ-VGKPEDL 228 (353)
T ss_dssp EE-EECHHHH
T ss_pred EE-EcCHHHH
Confidence 74 4776655
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=340.96 Aligned_cols=199 Identities=25% Similarity=0.307 Sum_probs=154.5
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEE----EEEeeeeecCC-ChHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID----VLLVEQEVVGD-DRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~----i~~~~q~~~~~-~~~~ 238 (723)
+|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+..|..|.+. +.|+.|+.... ..+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBH
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCH
Confidence 599999999998 88999999999999999999999999999999999998765443331 23333332111 1111
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHh---cCchHHHHHHHHHHHhCCCCccccC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI---LGSDAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
. +++......... ........++.++++.+|+.+ ..+
T Consensus 84 ~---------------------------------------enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~ 123 (253)
T 2nq2_C 84 L---------------------------------------DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-LAK 123 (253)
T ss_dssp H---------------------------------------HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTT
T ss_pred H---------------------------------------HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-Hhc
Confidence 1 111100000000 011233567889999999964 457
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|+
T Consensus 124 ~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 203 (253)
T 2nq2_C 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN 203 (253)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 899999999999999999999999999999999999999999999998764 6799999999999999999999999
Q ss_pred CCEEEEecCChhhH
Q 048654 392 DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 ~G~i~~~~g~~~~~ 405 (723)
+|+ + +.|+++++
T Consensus 204 ~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 204 KQN-F-KFGETRNI 215 (253)
T ss_dssp TTE-E-EEEEHHHH
T ss_pred CCe-E-ecCCHHHH
Confidence 999 5 45766554
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=348.23 Aligned_cols=202 Identities=28% Similarity=0.391 Sum_probs=161.2
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
..|+++||+|+|++. ..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 469999999999743 46899999999999999999999999999999999999999999998874 259
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCC-----------CCCCCcCCCCCCCHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-----------PSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl-----------~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
+|++|++.- + ..++.+.+...... . ....+..+++.+++ .... .....+|||||||||+||
T Consensus 131 ~~v~Q~~~l-f--~~Tv~eNi~~~~~~-~---~~~~~~~~~~~~~l~~~i~~lp~gl~t~~-~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 131 GVVPQDTVL-F--NDTIADNIRYGRVT-A---GNDEVEAAAQAAGIHDAIMAFPEGYRTQV-GERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EEECSSCCC-C--SEEHHHHHHTTSTT-C---CHHHHHHHHHHHTCHHHHHHSTTGGGCEE-STTSBCCCHHHHHHHHHH
T ss_pred EEEecCCcc-C--cccHHHHHHhhccc-C---CHHHHHHHHHHhCcHHHHHhccchhhhHh-cCCcCCCCHHHHHHHHHH
Confidence 999997531 1 22433333221111 1 12334444444443 2222 234578999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||++||+.+...|.+.|.++ +.|||+||||++.+.. | |+|++|++|+|+. .|+++++
T Consensus 203 RAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-a-----D~i~vl~~G~iv~-~G~~~el 275 (306)
T 3nh6_A 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-A-----DQILVIKDGCIVE-RGRHEAL 275 (306)
T ss_dssp HHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-C-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-C-----CEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999999999886 4699999999999976 7 4999999999985 5888887
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
..
T Consensus 276 ~~ 277 (306)
T 3nh6_A 276 LS 277 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=339.51 Aligned_cols=203 Identities=28% Similarity=0.396 Sum_probs=163.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
||+++||+++|++. ..+|++|||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 58899999999422 35899999999999999999999999999999999999999999998763 2489
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCc----------CCCCCCCHHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL----------TPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~----------~~i~~LSGGqkqRv~lAra 633 (723)
|++|... .+ ..++.+.+ .+... ... ..+.+..+++.+++...... +++.+|||||||||+||||
T Consensus 80 ~v~q~~~-l~--~~tv~enl-~~~~~-~~~-~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 80 FVSQDSA-IM--AGTIRENL-TYGLE-GDY-TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp EECCSSC-CC--CEEHHHHT-TSCTT-SCS-CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEcCCCc-cc--cccHHHHH-hhhcc-CCC-CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 9999752 12 12433332 22101 111 23557788888888654332 2457999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|+||||||||+|||+.+...+.+.|.++ +.|||+||||++++. .|| +|++|++|+++ ..|+++++..
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d-----~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DAD-----KIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCS-----EEEEEETTEEC-CCSCHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCC-----EEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999999999876 469999999999886 584 99999999997 5688887754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=337.31 Aligned_cols=198 Identities=30% Similarity=0.415 Sum_probs=163.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~i 562 (723)
++|+++||++. .+|+||||+|.+|++++|+|||||||||||++|+|+++|+ |+|.+++.. .+
T Consensus 3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 37999999986 3799999999999999999999999999999999999999 999987742 48
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC---
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--- 639 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--- 639 (723)
+|++|+... ....++.+.+. +... .... .+.+.++++.+||.... ++++.+|||||||||+|||||+.+|+
T Consensus 76 ~~v~q~~~~--~~~~tv~e~l~-~~~~-~~~~-~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~~~~ 149 (249)
T 2qi9_C 76 AYLSQQQTP--PFATPVWHYLT-LHQH-DKTR-TELLNDVAGALALDDKL-GRSTNQLSGGEWQRVRLAAVVLQITPQAN 149 (249)
T ss_dssp EEECSCCCC--CTTCBHHHHHH-TTCS-STTC-HHHHHHHHHHTTCGGGT-TSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred EEECCCCcc--CCCCcHHHHHH-Hhhc-cCCc-HHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHHcCCCcCC
Confidence 999997531 11123333322 2111 1112 56688999999997654 46779999999999999999999999
Q ss_pred ----eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 640 ----ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 640 ----lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 150 ~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~ 221 (249)
T 2qi9_C 150 PAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAH-----RAWLLKGGKMLA-SGRREEVL 221 (249)
T ss_dssp TTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EEEHHHHS
T ss_pred CCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999876 3699999999999999995 999999999974 57877764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=344.22 Aligned_cols=215 Identities=25% Similarity=0.303 Sum_probs=162.5
Q ss_pred ceEEEeEEEEeC--C---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAAR--G---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~--~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
+|+++||+++|+ + +++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~--~--- 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKG--Y--- 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCH--H---
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECch--H---
Confidence 589999999997 5 689999999999999999999999999999999999865 457788777655421 0
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc-cccCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK-EMQGRPT 318 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~ 318 (723)
.++..++++.+.... ......+.+++...... . ........++.++++.+|+.. ...++++
T Consensus 75 -----------~~~~~i~~v~q~~~~-----~~~~~tv~enl~~~~~~-~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (266)
T 2yz2_A 75 -----------EIRRNIGIAFQYPED-----QFFAERVFDEVAFAVKN-F-YPDRDPVPLVKKAMEFVGLDFDSFKDRVP 136 (266)
T ss_dssp -----------HHGGGEEEECSSGGG-----GCCCSSHHHHHHHTTTT-T-CTTSCSHHHHHHHHHHTTCCHHHHTTCCG
T ss_pred -----------HhhhhEEEEeccchh-----hcCCCcHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHcCcCCcccccCCh
Confidence 112223333221100 00011223333211100 0 122223567889999999961 3457999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i 216 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK 216 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998765 67999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+.+++
T Consensus 217 ~~-~g~~~~~ 225 (266)
T 2yz2_A 217 VF-DGTRMEF 225 (266)
T ss_dssp EE-EEEHHHH
T ss_pred EE-eCCHHHH
Confidence 64 4665544
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=332.90 Aligned_cols=201 Identities=24% Similarity=0.356 Sum_probs=156.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccccccc
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLL 573 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~ 573 (723)
.+|+++||+++|++....+|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +++|++|.... +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~~-~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSWI-M 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCCC-C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCcc-c
Confidence 47999999999963334689999999999999999999999999999999999999999999988 48999997531 1
Q ss_pred CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC----------CCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH----------NHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
. .++.+.+. +.... .......+++.+++... ....++.+|||||||||+|||||+.+|+||||
T Consensus 82 ~--~tv~enl~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllL 154 (229)
T 2pze_A 82 P--GTIKENII-FGVSY----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLL 154 (229)
T ss_dssp S--BCHHHHHH-TTSCC----CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred C--CCHHHHhh-ccCCc----ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 24333332 21111 11223334444443211 11234579999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHH-HHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADA-LDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~-L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||+|||+.+...+.+. +.++ +.|||+||||++++. .|| +|++|++|+++. .|+++++..
T Consensus 155 DEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d-----~v~~l~~G~i~~-~g~~~~~~~ 218 (229)
T 2pze_A 155 DSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KAD-----KILILHEGSSYF-YGTFSELQN 218 (229)
T ss_dssp ESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCS-----EEEEEETTEEEE-EECHHHHHT
T ss_pred ECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCC-----EEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999997 4444 469999999999986 584 999999999974 578877653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=336.38 Aligned_cols=210 Identities=22% Similarity=0.269 Sum_probs=159.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|++ +|+||||+|++ ++++|+|||||||||||++|+|+.. |..|+|.+.++++.....
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~-------- 67 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPP-------- 67 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCT--------
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCch--------
Confidence 3789999999976 49999999999 9999999999999999999999865 467888887766532110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.+..++++.+.... .....+.+++.... ...+......++.++|+.+|+.+ ..++++.+||||
T Consensus 68 -------~~~~i~~v~q~~~l------~~~ltv~enl~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG 130 (240)
T 2onk_A 68 -------ERRGIGFVPQDYAL------FPHLSVYRNIAYGL---RNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGG 130 (240)
T ss_dssp -------TTSCCBCCCSSCCC------CTTSCHHHHHHTTC---TTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHH
T ss_pred -------hhCcEEEEcCCCcc------CCCCcHHHHHHHHH---HHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHH
Confidence 01112222221100 11112223221110 01111223567889999999974 457999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 131 qkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g 209 (240)
T 2onk_A 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KG 209 (240)
T ss_dssp HHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EC
Confidence 999999999999999999999999999999999999988754 6799999999999999999999999999974 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+++
T Consensus 210 ~~~~~ 214 (240)
T 2onk_A 210 KLKEL 214 (240)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76655
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=335.16 Aligned_cols=203 Identities=22% Similarity=0.326 Sum_probs=156.0
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccC
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLT 574 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~ 574 (723)
+|+++||++.|++....+|++|||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|... +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 6899999999974224689999999999999999999999999999999999999999999988 4899999752 2
Q ss_pred ccccHHHHHHhhCCCCCCCcHHHHHHHH---HHhCCCCCC----CCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCC
Q 048654 575 MEETPVSYLLRLHPDQEGLSKQEAVRAK---LGKFGLPSH----NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647 (723)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~gl~~~----~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT 647 (723)
...++.+.+. +.... .......+... ++.+++... ...+++.+|||||||||+|||||+.+|+||||||||
T Consensus 78 ~~~tv~enl~-~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 78 QNDSLRENIL-FGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp CSEEHHHHHH-TTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CCcCHHHHhh-Ccccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1224333332 21111 11111222221 222333211 123567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH---Hc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 648 NHLDMQSIDALADALD---EF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 648 ~~LD~~s~~~l~~~L~---~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
++||+.+...+.+.|. ++ +.|||+||||++++. +| |+|++|++|+|+. .|+++++..
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~-----d~v~~l~~G~i~~-~g~~~~~~~ 217 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QV-----DVIIVMSGGKISE-MGSYQELLA 217 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GS-----SEEEEEETTEEEE-EECHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hC-----CEEEEEeCCEEEE-eCCHHHHhh
Confidence 9999999999999984 33 469999999999875 68 4999999999974 588887654
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=332.24 Aligned_cols=192 Identities=21% Similarity=0.304 Sum_probs=156.6
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------eeEEEEc
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------LRIGRYS 566 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------~~ig~~~ 566 (723)
..+|+++||++.|++ .+|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++
T Consensus 8 ~~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp -CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred CceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 358999999999974 5899999999999999999999999999999999999999999999874 2599999
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|... ..+++.++.... ...+.. .. ..+.+.++++.+||... .+++.+|||||||||+|||||+.+|+|||||
T Consensus 85 q~~~~~~~~tv~enl~~~-~~~~~~--~~-~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAV-ASLYGV--KV-NKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp SSCCCCTTSBHHHHHHHH-HHHTTC--CC-CHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCcCCCCCCHHHHHHHH-HHhcCC--ch-HHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9743 223444443211 122111 11 24668889999999765 5678999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 645 EPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
|||++||+.++..+.+.|.++. .|||+||||++++..+|| +|++ -.|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d-----~v~~-~~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNE-----NLHK-YSTKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEE-----EGGG-GBC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEE-eCCcc
Confidence 9999999999999999998763 589999999999998884 6664 45665
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=332.54 Aligned_cols=211 Identities=25% Similarity=0.367 Sum_probs=155.9
Q ss_pred ceEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 165 DITIDNFSVAA--RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 165 ~I~l~nls~~y--~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
+|+++||+++| +++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++......
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~----- 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPN----- 79 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHH-----
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHH-----
Confidence 58999999999 46789999999999999999999999999999999999865 4578888877665432211
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc----------c
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK----------E 312 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~ 312 (723)
.++..++++.+.... . ...+.+++... .......++.++++.+|+.. .
T Consensus 80 --------~~~~~i~~v~Q~~~l------~-~~tv~enl~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 80 --------WLRRQVGVVLQDNVL------L-NRSIIDNISLA-------NPGMSVEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp --------HHHHHEEEECSSCCC------T-TSBHHHHHTTT-------CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred --------HHHhcEEEEeCCCcc------c-cccHHHHHhcc-------CCCCCHHHHHHHHHHhChHHHHHhCcchhhh
Confidence 123334444332111 0 11222222110 00011234455555555532 1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 313 ~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.. ||+|++|
T Consensus 138 ~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l 216 (247)
T 2ff7_A 138 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVM 216 (247)
T ss_dssp BCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEE
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 234567899999999999999999999999999999999999999999999865 6899999999999865 9999999
Q ss_pred eCCEEEEecCChhhHH
Q 048654 391 HDQKLHFYRGNFDDFE 406 (723)
Q Consensus 391 ~~G~i~~~~g~~~~~~ 406 (723)
++|+++. .|+.+++.
T Consensus 217 ~~G~i~~-~g~~~~l~ 231 (247)
T 2ff7_A 217 EKGKIVE-QGKHKELL 231 (247)
T ss_dssp ETTEEEE-EECHHHHH
T ss_pred ECCEEEE-ECCHHHHH
Confidence 9999974 57766553
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=335.24 Aligned_cols=203 Identities=26% Similarity=0.371 Sum_probs=161.2
Q ss_pred CeEEEEEEEEEcCCCc-ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNRE-DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~-~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.+|+++||+++|++.. ..+|+||||+|++|++++|+||||||||||+++|+|+++| +|+|.+++. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4799999999997531 3589999999999999999999999999999999999997 899998763 24
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC-------C---CcCCCCCCCHHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH-------N---HLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~-------~---~~~~i~~LSGGqkqRv~lA 631 (723)
++|++|.+.- + ..++.+.+. +... .. ..+.+.++++.+++... . ..+++.+|||||||||+||
T Consensus 95 i~~v~Q~~~l-~--~~tv~enl~-~~~~--~~-~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 95 IGIVPQDTIL-F--NETIKYNIL-YGKL--DA-TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp EEEECSSCCC-C--SEEHHHHHH-TTCT--TC-CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred EEEEcCCCcc-c--ccCHHHHHh-ccCC--CC-CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 8999997531 2 224444332 2111 11 23456667777765321 0 1245689999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||++||+.+...+.+.|.++. .|||+||||++++. .| |+|++|++|+|+. .|+++++
T Consensus 168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~-----d~i~~l~~G~i~~-~g~~~~l 240 (260)
T 2ghi_A 168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SA-----ESIILLNKGKIVE-KGTHKDL 240 (260)
T ss_dssp HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TC-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hC-----CEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999998874 69999999999885 47 4999999999974 5888776
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
..
T Consensus 241 ~~ 242 (260)
T 2ghi_A 241 LK 242 (260)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=340.75 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=159.2
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..|+++||+|+|+ ++++|+||||+|++|+++|||||||||||||+++|+|++. |..|.|.+.+.++...+..
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~----- 124 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQA----- 124 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHH-----
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHH-----
Confidence 4699999999995 5789999999999999999999999999999999999875 4577888887776543321
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHH-----HHHHHHHHHhC--CCCccccC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAA-----EAQASKILAGL--GFTKEMQG 315 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~L~~l--gl~~~~~~ 315 (723)
.++..++++.+.... ....+.+++.... .....+.. ...+.+++..+ |+.. ..+
T Consensus 125 --------~~r~~i~~v~Q~~~l-------f~~Tv~eNi~~~~---~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t-~~~ 185 (306)
T 3nh6_A 125 --------SLRSHIGVVPQDTVL-------FNDTIADNIRYGR---VTAGNDEVEAAAQAAGIHDAIMAFPEGYRT-QVG 185 (306)
T ss_dssp --------HHHHTEEEECSSCCC-------CSEEHHHHHHTTS---TTCCHHHHHHHHHHHTCHHHHHHSTTGGGC-EES
T ss_pred --------HHhcceEEEecCCcc-------CcccHHHHHHhhc---ccCCHHHHHHHHHHhCcHHHHHhccchhhh-Hhc
Confidence 233444554432211 0112222221100 00011110 11123344444 4543 346
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+.+.+|||||||||+|||||+.+|+||||||||++||+.+...|.+.|.++ ++|||+||||++++.. ||+|++|++|
T Consensus 186 ~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECC
Confidence 788999999999999999999999999999999999999999999999865 6799999999999987 9999999999
Q ss_pred EEEEecCChhhHH
Q 048654 394 KLHFYRGNFDDFE 406 (723)
Q Consensus 394 ~i~~~~g~~~~~~ 406 (723)
+|+. .|+++++.
T Consensus 265 ~iv~-~G~~~el~ 276 (306)
T 3nh6_A 265 CIVE-RGRHEALL 276 (306)
T ss_dssp EEEE-EECHHHHH
T ss_pred EEEE-ECCHHHHH
Confidence 9975 58877664
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=338.60 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=160.6
Q ss_pred cceEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARG---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.+|+++||+++|++ +++|+||||+|++|++++|+|||||||||||++|+|++. |..|.|.+.+.++......
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~--- 89 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHH--- 89 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHH---
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHH---
Confidence 46999999999986 789999999999999999999999999999999999865 4578888877665322111
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc-hH-----HHHHHHHHHHhC--CCCcc
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS-DA-----AEAQASKILAGL--GFTKE 312 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-----~~~~~~~~L~~l--gl~~~ 312 (723)
.++..++++.+.... . ...+.+++.... ..... .. ....+.++++.+ |+..
T Consensus 90 ----------~~~~~i~~v~Q~~~l------~-~~tv~enl~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~- 148 (271)
T 2ixe_A 90 ----------YLHTQVAAVGQEPLL------F-GRSFRENIAYGL---TRTPTMEEITAVAMESGAHDFISGFPQGYDT- 148 (271)
T ss_dssp ----------HHHHHEEEECSSCCC------C-SSBHHHHHHTTC---SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGS-
T ss_pred ----------HHhccEEEEecCCcc------c-cccHHHHHhhhc---ccCChHHHHHHHHHHHhHHHHHHhhhcchhh-
Confidence 123344444332111 0 112222221100 00111 11 122356778888 6753
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEE
Q 048654 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 313 ~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii 388 (723)
..++++.+|||||||||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++.. ||+|+
T Consensus 149 ~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~ 227 (271)
T 2ixe_A 149 EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHIL 227 (271)
T ss_dssp BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEE
T ss_pred hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEE
Confidence 457889999999999999999999999999999999999999999999999875 4699999999999975 99999
Q ss_pred EEeCCEEEEecCChhhH
Q 048654 389 HLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~~ 405 (723)
+|++|+++. .|+.+++
T Consensus 228 ~l~~G~i~~-~g~~~~l 243 (271)
T 2ixe_A 228 FLKEGSVCE-QGTHLQL 243 (271)
T ss_dssp EEETTEEEE-EECHHHH
T ss_pred EEECCEEEE-ECCHHHH
Confidence 999999974 5776655
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=334.28 Aligned_cols=207 Identities=22% Similarity=0.306 Sum_probs=160.2
Q ss_pred ceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++|++++|++ +++|+|+||+|+ |++++|+|||||||||||++|+|+. | ..|+|.+.+.++... ..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~-~~--- 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKI-RN--- 72 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGC-SC---
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcch-HH---
Confidence 3889999999987 889999999999 9999999999999999999999986 4 577887776654211 00
Q ss_pred HHHHhhHHHHHHHHHHH-hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 241 AVVSAHEELVKLREEVA-SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
+..++ ++.+... . ...+.+++.... .+. . ....++.++++.+|+.....++++.
T Consensus 73 ------------~~~i~~~v~Q~~~-------l-~~tv~enl~~~~-~~~--~--~~~~~~~~~l~~~gl~~~~~~~~~~ 127 (263)
T 2pjz_A 73 ------------YIRYSTNLPEAYE-------I-GVTVNDIVYLYE-ELK--G--LDRDLFLEMLKALKLGEEILRRKLY 127 (263)
T ss_dssp ------------CTTEEECCGGGSC-------T-TSBHHHHHHHHH-HHT--C--CCHHHHHHHHHHTTCCGGGGGSBGG
T ss_pred ------------hhheEEEeCCCCc-------c-CCcHHHHHHHhh-hhc--c--hHHHHHHHHHHHcCCChhHhcCChh
Confidence 01122 2222110 0 112233332211 111 1 1245688999999997234579999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCC-EEEEEeCCEEEEe
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCT-EIIHLHDQKLHFY 398 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad-~Ii~L~~G~i~~~ 398 (723)
+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++..|||+||||++++..+|| +|++|++|+++.
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~- 206 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG- 206 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEE-
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEE-
Confidence 999999999999999999999999999999999999999999999885599999999999999999 999999999964
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
.|+.+++
T Consensus 207 ~g~~~~l 213 (263)
T 2pjz_A 207 PISVSEL 213 (263)
T ss_dssp EEEHHHH
T ss_pred ecCHHHH
Confidence 4666554
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=330.13 Aligned_cols=207 Identities=26% Similarity=0.273 Sum_probs=159.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++ ++|+|+||+|++|++++|+|||||||||||++|+|+..| . |+|.+.+.++......
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~------- 69 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSAT------- 69 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHH-------
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHH-------
Confidence 5899999986 799999999999999999999999999999999998754 4 7787777655322111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.++..++++.+.... .....+.+++... ...... ..++.++++.+|+.+ ..++++.+||||
T Consensus 70 ------~~~~~i~~v~q~~~~------~~~~tv~e~l~~~----~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~LSgG 130 (249)
T 2qi9_C 70 ------KLALHRAYLSQQQTP------PFATPVWHYLTLH----QHDKTR--TELLNDVAGALALDD-KLGRSTNQLSGG 130 (249)
T ss_dssp ------HHHHHEEEECSCCCC------CTTCBHHHHHHTT----CSSTTC--HHHHHHHHHHTTCGG-GTTSBGGGCCHH
T ss_pred ------HHhceEEEECCCCcc------CCCCcHHHHHHHh----hccCCc--HHHHHHHHHHcCChh-HhcCChhhCCHH
Confidence 123334444332111 1111223322110 000111 567889999999964 557899999999
Q ss_pred HHHHHHHHHHHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 325 WRMRISLARALFVQPT-------LLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 325 qrQRvaLArAL~~~P~-------lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
|||||+|||||+.+|+ ||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 131 q~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 210 (249)
T 2qi9_C 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGK 210 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999 99999999999999999999998765 6799999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|+++++
T Consensus 211 i~~-~g~~~~~ 220 (249)
T 2qi9_C 211 MLA-SGRREEV 220 (249)
T ss_dssp EEE-EEEHHHH
T ss_pred EEE-eCCHHHH
Confidence 974 4666554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=328.03 Aligned_cols=210 Identities=23% Similarity=0.329 Sum_probs=155.9
Q ss_pred cceEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARG---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.+|+++||+++|++ +++|+||||+|++|++++|+|||||||||||++|+|++. + .|.|.+.+.++......
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~--- 89 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRN--- 89 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHH---
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHH---
Confidence 46999999999986 469999999999999999999999999999999999864 4 68888877665322111
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc--------
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE-------- 312 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~-------- 312 (723)
.++..++++.+.... . ...+.+++.. ..... ...++.++++.+++...
T Consensus 90 ----------~~~~~i~~v~Q~~~l------~-~~tv~enl~~-----~~~~~--~~~~~~~~l~~~~l~~~~~~l~~~~ 145 (260)
T 2ghi_A 90 ----------SIRSIIGIVPQDTIL------F-NETIKYNILY-----GKLDA--TDEEVIKATKSAQLYDFIEALPKKW 145 (260)
T ss_dssp ----------HHHTTEEEECSSCCC------C-SEEHHHHHHT-----TCTTC--CHHHHHHHHHHTTCHHHHHTSTTGG
T ss_pred ----------HHhccEEEEcCCCcc------c-ccCHHHHHhc-----cCCCC--CHHHHHHHHHHhCCHHHHHhccccc
Confidence 122333444332111 0 1122222211 00111 12345566666665321
Q ss_pred --ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEE
Q 048654 313 --MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 313 --~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii 388 (723)
..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++. .||+|+
T Consensus 146 ~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~ 224 (260)
T 2ghi_A 146 DTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESII 224 (260)
T ss_dssp GCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEE
T ss_pred cccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEE
Confidence 124678899999999999999999999999999999999999999999999865 579999999999986 599999
Q ss_pred EEeCCEEEEecCChhhH
Q 048654 389 HLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~~ 405 (723)
+|++|+++. .|+.+++
T Consensus 225 ~l~~G~i~~-~g~~~~l 240 (260)
T 2ghi_A 225 LLNKGKIVE-KGTHKDL 240 (260)
T ss_dssp EEETTEEEE-EECHHHH
T ss_pred EEECCEEEE-ECCHHHH
Confidence 999999974 5777665
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=345.75 Aligned_cols=202 Identities=25% Similarity=0.340 Sum_probs=165.1
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
...|+++||+++|++....+|+||||+|++||+++|+|||||||||||++|+|+++ ++|+|.+++. ..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 35699999999995333568999999999999999999999999999999999998 8999998873 35
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCC-----------CCHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAK-----------LSGGQKARVVF 630 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~-----------LSGGqkqRv~l 630 (723)
++|++|+..- +. .+..+.+ ..+.. ...+++.++++.++|..... +.+.+ |||||||||+|
T Consensus 96 ig~v~Q~~~l-f~--~tv~enl-~~~~~----~~~~~v~~~l~~~~L~~~~~-~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 96 FGVIPQKVFI-FS--GTFRKNL-DPNAA----HSDQEIWKVADEVGLRSVIE-QFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp EEEESCCCCC-CS--EEHHHHH-CTTCC----SCHHHHHHHHHHTTCHHHHT-TSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred EEEEcCCccc-Cc--cCHHHHh-hhccc----cCHHHHHHHHHHhCCHHHHh-hcccccccccccccccCCHHHHHHHHH
Confidence 9999997532 11 2433333 22211 13456888999999975444 44466 99999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|+||||||||++||+.++..+.+.|+++. .|||+||||++.+ ..| |||++|++|+|+. .|++++
T Consensus 167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~a-----Dri~vl~~G~i~~-~g~~~e 239 (390)
T 3gd7_A 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LEC-----DQFLVIEENKVRQ-YDSILE 239 (390)
T ss_dssp HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTC-----SEEEEEETTEEEE-ESSHHH
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhC-----CEEEEEECCEEEE-ECCHHH
Confidence 999999999999999999999999999999998864 6899999998765 457 5999999999975 588888
Q ss_pred HHH
Q 048654 709 YKE 711 (723)
Q Consensus 709 ~~~ 711 (723)
+..
T Consensus 240 l~~ 242 (390)
T 3gd7_A 240 LYH 242 (390)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=329.92 Aligned_cols=212 Identities=21% Similarity=0.288 Sum_probs=154.2
Q ss_pred ceEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAA-RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y-~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++||+++| +++++|+||||+|++|++++|+|||||||||||++|+|++.| ..|.|.+.+.++.......
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~----- 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLEN----- 73 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSC-----
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHH-----
Confidence 38899999999 678899999999999999999999999999999999998765 4566666666553211100
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccc----------
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM---------- 313 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~---------- 313 (723)
++..++++.+.... . ...+.+++... ........++.++++.+|+.+..
T Consensus 74 --------~~~~i~~v~q~~~l------~-~~tv~enl~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~ 132 (243)
T 1mv5_A 74 --------WRSQIGFVSQDSAI------M-AGTIRENLTYG------LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132 (243)
T ss_dssp --------CTTTCCEECCSSCC------C-CEEHHHHTTSC------TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCE
T ss_pred --------HHhhEEEEcCCCcc------c-cccHHHHHhhh------ccCCCCHHHHHHHHHHhChHHHHHhCccchhch
Confidence 01122233221110 0 11222221100 00111134567778888775322
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
.++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++. .||+|++|+
T Consensus 133 ~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~ 211 (243)
T 1mv5_A 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIE 211 (243)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEE
T ss_pred hccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEE
Confidence 13456899999999999999999999999999999999999999998888765 689999999999986 599999999
Q ss_pred CCEEEEecCChhhHH
Q 048654 392 DQKLHFYRGNFDDFE 406 (723)
Q Consensus 392 ~G~i~~~~g~~~~~~ 406 (723)
+|+++ ..|+++++.
T Consensus 212 ~G~i~-~~g~~~~~~ 225 (243)
T 1mv5_A 212 KGQIT-GSGKHNELV 225 (243)
T ss_dssp TTEEC-CCSCHHHHH
T ss_pred CCEEE-EeCCHHHHH
Confidence 99996 457766553
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=322.25 Aligned_cols=193 Identities=24% Similarity=0.309 Sum_probs=141.6
Q ss_pred ceEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEE------eeeeecCCCh
Q 048654 165 DITIDNFSVAAR--GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL------VEQEVVGDDR 236 (723)
Q Consensus 165 ~I~l~nls~~y~--~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~------~~q~~~~~~~ 236 (723)
+|+++||+++|+ ++++|+||||+|++|++++|+|||||||||||++|+|++.|. .|+|.+ +.|+......
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~i~~v~Q~~~~~~~ 80 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV--EGHVAIKGSVAYVPQQAWIQND 80 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE--EEEEEECSCEEEECSSCCCCSE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEEEEcCCCcCCCc
Confidence 589999999997 578999999999999999999999999999999999987654 455543 3333221122
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHH---HHHHHhCCCCc--
Q 048654 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA---SKILAGLGFTK-- 311 (723)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~L~~lgl~~-- 311 (723)
+..+++ .+... .... ...++ ..+++.+++.+
T Consensus 81 tv~enl--------------~~~~~-----------------------------~~~~-~~~~~~~~~~l~~~~~~~~~~ 116 (237)
T 2cbz_A 81 SLRENI--------------LFGCQ-----------------------------LEEP-YYRSVIQACALLPDLEILPSG 116 (237)
T ss_dssp EHHHHH--------------HTTSC-----------------------------CCTT-HHHHHHHHTTCHHHHTTSTTG
T ss_pred CHHHHh--------------hCccc-----------------------------cCHH-HHHHHHHHHhhHHHHHhcccc
Confidence 221111 10000 0000 00011 11122233211
Q ss_pred --cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hc--CcEEEEEeCCHHHHHhhC
Q 048654 312 --EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC---RW--KKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 312 --~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~---~~--~~TVIivsHdl~~l~~ia 384 (723)
...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. ++ +.|||+||||++++. .|
T Consensus 117 ~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~ 195 (237)
T 2cbz_A 117 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QV 195 (237)
T ss_dssp GGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GS
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hC
Confidence 12368899999999999999999999999999999999999999999999884 22 579999999999985 69
Q ss_pred CEEEEEeCCEEEEecCChhhH
Q 048654 385 TEIIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 385 d~Ii~L~~G~i~~~~g~~~~~ 405 (723)
|+|++|++|+++. .|+++++
T Consensus 196 d~v~~l~~G~i~~-~g~~~~~ 215 (237)
T 2cbz_A 196 DVIIVMSGGKISE-MGSYQEL 215 (237)
T ss_dssp SEEEEEETTEEEE-EECHHHH
T ss_pred CEEEEEeCCEEEE-eCCHHHH
Confidence 9999999999974 5777655
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=317.99 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=141.4
Q ss_pred ceEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEE------EeeeeecCCCh
Q 048654 165 DITIDNFSVAAR--GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL------LVEQEVVGDDR 236 (723)
Q Consensus 165 ~I~l~nls~~y~--~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~------~~~q~~~~~~~ 236 (723)
+|+++|++++|+ ++++|+||||+|++|++++|+|||||||||||++|+|+..|. .|+|. |+.|+......
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEECSCEEEECSSCCCCSB
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--ccEEEECCEEEEEecCCcccCC
Confidence 599999999995 578999999999999999999999999999999999987654 45544 33333222112
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-ccccC
Q 048654 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT-KEMQG 315 (723)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~ 315 (723)
+..+++ .+... ... ...... +.. ..+.+.++.+... ....+
T Consensus 84 tv~enl--------------~~~~~----------~~~----~~~~~~---~~~-------~~l~~~~~~~~~~~~~~~~ 125 (229)
T 2pze_A 84 TIKENI--------------IFGVS----------YDE----YRYRSV---IKA-------CQLEEDISKFAEKDNIVLG 125 (229)
T ss_dssp CHHHHH--------------HTTSC----------CCH----HHHHHH---HHH-------TTCHHHHTTSTTGGGSCBC
T ss_pred CHHHHh--------------hccCC----------cCh----HHHHHH---HHH-------hCcHHHHHhCccccccccc
Confidence 222221 10000 000 000000 000 0112233333221 11234
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL-CRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L-~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.+ .++ +.|||+||||++++. .||+|++|++
T Consensus 126 ~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 204 (229)
T 2pze_A 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 204 (229)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEET
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEEC
Confidence 567899999999999999999999999999999999999999999964 443 579999999999986 5999999999
Q ss_pred CEEEEecCChhhHH
Q 048654 393 QKLHFYRGNFDDFE 406 (723)
Q Consensus 393 G~i~~~~g~~~~~~ 406 (723)
|+++. .|+++++.
T Consensus 205 G~i~~-~g~~~~~~ 217 (229)
T 2pze_A 205 GSSYF-YGTFSELQ 217 (229)
T ss_dssp TEEEE-EECHHHHH
T ss_pred CEEEE-ECCHHHHH
Confidence 99974 57766553
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=367.21 Aligned_cols=392 Identities=14% Similarity=0.054 Sum_probs=231.1
Q ss_pred eEEEeEEEEeCCeeeeEeeeE-EEeCCcEEEEECCCCccHHHHHHH--HHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 166 ITIDNFSVAARGKELLKSTSV-RISHGKRYGLVGPNGMGKSTLLKL--LAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl-~i~~Ge~~~LvG~NGsGKSTLlk~--L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
++.+++.+.+++.++|++|+| .|++|++++|+||||||||||+++ ++|+..| +.+.+.+.+.+. .....
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~----~~~~~-- 84 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEET----PQDII-- 84 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSC----HHHHH--
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCC----HHHHH--
Confidence 444556665668899999999 999999999999999999999999 6787543 556666554331 11000
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
.....++++.+. .. ....+....... ..++.+++ ..+.
T Consensus 85 --------~~~~~~g~~~q~------------------~~-~~~~l~~~~~~~-~~~~~~~l--------------~~~~ 122 (525)
T 1tf7_A 85 --------KNARSFGWDLAK------------------LV-DEGKLFILDASP-DPEGQEVV--------------GGFD 122 (525)
T ss_dssp --------HHHGGGTCCHHH------------------HH-HTTSEEEEECCC-CSSCCSCC--------------SSHH
T ss_pred --------HHHHHcCCChHH------------------hh-ccCcEEEEecCc-ccchhhhh--------------cccC
Confidence 000111110000 00 000000000000 00000011 1222
Q ss_pred hHHHHHHHHHHHHc-cCCCEEEEeCCCCC-----CCHHHHHHHHHHHhhc---CcEEEEEeCCHHHH---------HhhC
Q 048654 323 GGWRMRISLARALF-VQPTLLLLDEPTNH-----LDLRAVLWLEEYLCRW---KKTLVVVSHDRDFL---------NTVC 384 (723)
Q Consensus 323 GGqrQRvaLArAL~-~~P~lLLLDEPT~~-----LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l---------~~ia 384 (723)
-++ +.-.++.+|. .+|++|+|||||+. ||+..+..|.++++.+ +.|||+|||+++++ ..+|
T Consensus 123 l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~la 201 (525)
T 1tf7_A 123 LSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVS 201 (525)
T ss_dssp HHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHC
T ss_pred HHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeee
Confidence 222 2333444442 46899999999984 6899888888877644 78999999999984 5669
Q ss_pred CEEEEEeCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCccc
Q 048654 385 TEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVD 464 (723)
Q Consensus 385 d~Ii~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (723)
|+|++|++|++ .|....+... . +.+.. ..
T Consensus 202 D~vi~L~~~~~---~G~~~r~l~~--------------------------~--------------------k~r~~-~~- 230 (525)
T 1tf7_A 202 DNVVILRNVLE---GERRRRTLEI--------------------------L--------------------KLRGT-SH- 230 (525)
T ss_dssp SEEEEEEEECS---TTCCEEEEEE--------------------------E--------------------EETTS-CC-
T ss_pred eEEEEEEEEcc---CCceeEEEEE--------------------------E--------------------ECCCC-CC-
Confidence 99999998442 1221111000 0 00000 00
Q ss_pred CCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceece-EEEEecCcEEEEEcCCCCcHHHHHHHH
Q 048654 465 EDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDV-DVGIDMGTRVAIVGPNGAGKSTLLNLL 543 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~i-sl~i~~Ge~vaIvGpNGsGKSTLlk~L 543 (723)
.....+.......+. .+|.......+.++++++++.|++ |+.+ +..|.+|++++|+||||||||||+++|
T Consensus 231 ---~~~~~~~~i~~~gi~-v~p~~~~~~~~~~~~~~l~~g~~~-----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l 301 (525)
T 1tf7_A 231 ---MKGEYPFTITDHGIN-IFPLGAMRLTQRSSNVRVSSGVVR-----LDEMCGGGFFKDSIILATGATGTGKTLLVSRF 301 (525)
T ss_dssp ---CCSEEEEEEETTEEE-ECCTTTCCSCCCCCCCEECCSCHH-----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHH
T ss_pred ---CCceEEEEEcCCCEE-EEeccccccccccccceeecChHH-----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 000000000000000 011111112345677788776642 2222 448999999999999999999999999
Q ss_pred HcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHH
Q 048654 544 AGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGG 623 (723)
Q Consensus 544 ~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGG 623 (723)
+|...|. |. ..+.+.+|.... ........ + +... .+ +..+|+..... .++.+||||
T Consensus 302 ~g~~~~~-G~------~vi~~~~ee~~~------~l~~~~~~-~----g~~~----~~-~~~~g~~~~~~-~~p~~LS~g 357 (525)
T 1tf7_A 302 VENACAN-KE------RAILFAYEESRA------QLLRNAYS-W----GMDF----EE-MERQNLLKIVC-AYPESAGLE 357 (525)
T ss_dssp HHHHHTT-TC------CEEEEESSSCHH------HHHHHHHT-T----SCCH----HH-HHHTTSEEECC-CCGGGSCHH
T ss_pred HHHHHhC-CC------CEEEEEEeCCHH------HHHHHHHH-c----CCCH----HH-HHhCCCEEEEE-eccccCCHH
Confidence 9998885 43 113344443211 11111111 1 1111 12 22345433333 345799999
Q ss_pred HHHHHHHHHHHccCCCeEEeccCCCCCCHH-----HHHHHHHHHHHc---CceEEEEecCH----------HHHHHhcCc
Q 048654 624 QKARVVFTSISMSKPHILLLDEPTNHLDMQ-----SIDALADALDEF---TGGVVLVSHDS----------RLISRVCDD 685 (723)
Q Consensus 624 qkqRv~lAral~~~p~lLlLDEPT~~LD~~-----s~~~l~~~L~~~---~~tVIivSHD~----------~~~~~~~d~ 685 (723)
|+||+++|+++..+|++|||| ||++||.. .+..+.++++.+ +.|||+||||. .++..+||
T Consensus 358 ~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D- 435 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITD- 435 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCS-
T ss_pred HHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeee-
Confidence 999999999999999999999 99999998 888777766544 57999999999 77888884
Q ss_pred CCCcEEEEEECCe
Q 048654 686 EERSEIWVVENGT 698 (723)
Q Consensus 686 ~~~drv~vl~~G~ 698 (723)
+|++|++|+
T Consensus 436 ----~vi~L~~ge 444 (525)
T 1tf7_A 436 ----TIILLQYVE 444 (525)
T ss_dssp ----EEEEEEEEE
T ss_pred ----EEEEEEEEE
Confidence 999998876
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=321.59 Aligned_cols=199 Identities=19% Similarity=0.265 Sum_probs=152.0
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
..|+++||+++|++ ++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++. .
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~--~-------- 75 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT--K-------- 75 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG--G--------
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh--h--------
Confidence 46999999999998 99999999999999999999999999999999999865 45778877766542 0
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
.+..++++.+.... .....+.+++..... +... ... ..++.++++.+|+.. . ++++.+|||
T Consensus 76 --------~~~~i~~v~q~~~~------~~~~tv~enl~~~~~-~~~~-~~~-~~~~~~~l~~~gl~~-~-~~~~~~LSg 136 (214)
T 1sgw_A 76 --------VKGKIFFLPEEIIV------PRKISVEDYLKAVAS-LYGV-KVN-KNEIMDALESVEVLD-L-KKKLGELSQ 136 (214)
T ss_dssp --------GGGGEEEECSSCCC------CTTSBHHHHHHHHHH-HTTC-CCC-HHHHHHHHHHTTCCC-T-TSBGGGSCH
T ss_pred --------hcCcEEEEeCCCcC------CCCCCHHHHHHHHHH-hcCC-chH-HHHHHHHHHHcCCCc-C-CCChhhCCH
Confidence 01122333221111 111233333322211 1111 122 567889999999974 4 789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|+++. |+|
T Consensus 137 Gqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI 210 (214)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence 9999999999999999999999999999999999999988765 5799999999999999999988654 555
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=340.73 Aligned_cols=208 Identities=19% Similarity=0.290 Sum_probs=161.8
Q ss_pred cceEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAA--RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y--~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++||+|+| +++++|+||||+|++|++++|+|||||||||||++|+|+.. ..|+|.+.++++......
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~---- 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLE---- 90 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHH----
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChH----
Confidence 469999999999 67889999999999999999999999999999999999853 568888877766433221
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC-
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS- 320 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~- 320 (723)
.++..++++.+.... . ...+.++ +.... ....+++.++++.+|+.. ..++++.+
T Consensus 91 ---------~~rr~ig~v~Q~~~l------f-~~tv~en-------l~~~~-~~~~~~v~~~l~~~~L~~-~~~~~p~~l 145 (390)
T 3gd7_A 91 ---------QWRKAFGVIPQKVFI------F-SGTFRKN-------LDPNA-AHSDQEIWKVADEVGLRS-VIEQFPGKL 145 (390)
T ss_dssp ---------HHHHTEEEESCCCCC------C-SEEHHHH-------HCTTC-CSCHHHHHHHHHHTTCHH-HHTTSTTGG
T ss_pred ---------HHhCCEEEEcCCccc------C-ccCHHHH-------hhhcc-ccCHHHHHHHHHHhCCHH-HHhhccccc
Confidence 122334444332111 0 1122222 21111 122456788999999964 45788887
Q ss_pred ----------CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEE
Q 048654 321 ----------FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 321 ----------LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii 388 (723)
|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++.+. .||+|+
T Consensus 146 ~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~ 224 (390)
T 3gd7_A 146 DFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFL 224 (390)
T ss_dssp GCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEE
T ss_pred ccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEE
Confidence 9999999999999999999999999999999999999999999875 579999999997665 599999
Q ss_pred EEeCCEEEEecCChhhH
Q 048654 389 HLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~~ 405 (723)
+|++|+|+. .|++.++
T Consensus 225 vl~~G~i~~-~g~~~el 240 (390)
T 3gd7_A 225 VIEENKVRQ-YDSILEL 240 (390)
T ss_dssp EEETTEEEE-ESSHHHH
T ss_pred EEECCEEEE-ECCHHHH
Confidence 999999975 4777665
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=324.06 Aligned_cols=196 Identities=25% Similarity=0.352 Sum_probs=142.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccccccc
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLL 573 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~ 573 (723)
++|+++||++.| ..+|++|||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|.... +
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~l-~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWI-M 111 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCCC-C
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCcc-C
Confidence 479999999864 2489999999999999999999999999999999999999999999987 48999997421 2
Q ss_pred CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC----------CCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH----------NHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
. .+..+.+. ... . ....+..++..+++... ....++.+|||||||||+|||||+.+|+||||
T Consensus 112 ~--~tv~enl~-~~~-~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllL 183 (290)
T 2bbs_A 112 P--GTIKENII-GVS-Y----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLL 183 (290)
T ss_dssp S--SBHHHHHH-TTC-C----CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred c--ccHHHHhh-Ccc-c----chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 1 24444333 111 1 11223334444444211 01124579999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHH-HHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADAL-DEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L-~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||+|||+.++..+.+.| .++ +.|||+||||++++. .|| +|++|++|+++. .|+++++..
T Consensus 184 DEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d-----~i~~l~~G~i~~-~g~~~~l~~ 247 (290)
T 2bbs_A 184 DSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KAD-----KILILHEGSSYF-YGTFSELQN 247 (290)
T ss_dssp ESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCC-----EEEEEECCeEEE-eCCHHHHhh
Confidence 9999999999999999964 444 469999999999985 584 999999999974 588877643
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=347.52 Aligned_cols=205 Identities=26% Similarity=0.363 Sum_probs=163.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
..|+++||+|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 479999999999753246899999999999999999999999999999999999999999998773 258
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCC----------cCCCCCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH----------LTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~i~~LSGGqkqRv~lAr 632 (723)
+|++|++.- + ..+..+.+. +... .. ...+++.++++.+++.+... ..+..+|||||||||+|||
T Consensus 420 ~~v~Q~~~l-~--~~tv~eni~-~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 420 ALVSQNVHL-F--NDTIANNIA-YAAE-GE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred EEEcCCCcc-c--cccHHHHHh-ccCC-CC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence 999997531 1 123333322 1110 01 12455677777776643211 1245799999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|+||||||||++||+.+...+.+.|+++. .|||+||||++.+. .| |+|++|++|+|+. .|+++++.
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~-----d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QA-----DEILVVDEGEIIE-RGRHADLL 566 (582)
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hC-----CEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999998873 69999999999986 67 4999999999985 58888875
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 567 ~ 567 (582)
T 3b5x_A 567 A 567 (582)
T ss_pred h
Confidence 4
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=347.54 Aligned_cols=203 Identities=32% Similarity=0.433 Sum_probs=162.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
.-|+++||+|+|++...++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 469999999999864456899999999999999999999999999999999999999999999873 259
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC-----------CCCcCCCCCCCHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS-----------HNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~-----------~~~~~~i~~LSGGqkqRv~lA 631 (723)
+|++|+..- ...+..+.+....+.. ..+++.+.++..++.+ ... ....+|||||||||+||
T Consensus 418 ~~v~Q~~~l---~~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 418 GLVQQDNIL---FSDTVKENILLGRPTA----TDEEVVEAAKMANAHDFIMNLPQGYDTEVG-ERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp EEECSSCCC---CSSBHHHHHGGGCSSC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGTTSCHHHHHHHHHH
T ss_pred EEEeCCCcc---CcccHHHHHhcCCCCC----CHHHHHHHHHHhCcHHHHHhCcchhhhhhc-cCCCcCCHHHHHHHHHH
Confidence 999997421 1224334332222211 2344555555554421 111 23468999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||++||+.+...+.+.|+++. .|+|+||||++.+. .| |+|++|++|+|+. .|+++++
T Consensus 490 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~-----d~i~~l~~G~i~~-~g~~~el 562 (578)
T 4a82_A 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HA-----DKIVVIENGHIVE-TGTHREL 562 (578)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TC-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cC-----CEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999998764 69999999999985 47 5999999999985 5899887
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
.+
T Consensus 563 ~~ 564 (578)
T 4a82_A 563 IA 564 (578)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=347.66 Aligned_cols=205 Identities=28% Similarity=0.371 Sum_probs=164.1
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
..|+++||+|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 479999999999743246899999999999999999999999999999999999999999998873 259
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC----------CCcCCCCCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH----------NHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~i~~LSGGqkqRv~lAr 632 (723)
+|++|+..- + ..+..+.+. +... ... ..+++.++++.+++.+. ....+..+|||||||||+|||
T Consensus 420 ~~v~Q~~~l-~--~~tv~eni~-~~~~-~~~-~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 420 ALVSQNVHL-F--NDTVANNIA-YART-EEY-SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp EEECSSCCC-C--SSBHHHHHH-TTTT-SCC-CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred eEEccCCcC-C--CCCHHHHHh-ccCC-CCC-CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999997531 1 124333332 2110 011 24556777777766321 112345799999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||++.+. .| |+|++|++|+|+. .|+++++.
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~-----d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QA-----DEIVVVEDGIIVE-RGTHSELL 566 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TC-----SEEEEEETTEEEE-EECHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hC-----CEEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999999999999999886 469999999999885 57 5999999999985 58888875
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 567 ~ 567 (582)
T 3b60_A 567 A 567 (582)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=343.44 Aligned_cols=203 Identities=27% Similarity=0.360 Sum_probs=161.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
..|+++||+|+|++...++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 469999999999754457999999999999999999999999999999999999999999999873 359
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhC-----------CCCCCCCcCCCCCCCHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF-----------GLPSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-----------gl~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
+|++|+..- + ..+..+.+....+.. ..+++.+.++.. |+..... ....+|||||||||+||
T Consensus 420 ~~v~Q~~~l-f--~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 420 SAVPQETVL-F--SGTIKENLKWGREDA----TDDEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIA 491 (587)
T ss_dssp EEECSSCCC-C--SEEHHHHHTTTCSSC----CHHHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHH
T ss_pred EEECCCCcC-c--CccHHHHHhccCCCC----CHHHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHH
Confidence 999997531 1 224333332111111 223333444333 3332222 45579999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||++||+.+...+.+.|+++. .|||+||||++.+. .| |+|++|++|+|++ .|+++++
T Consensus 492 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~-----d~i~vl~~G~i~~-~g~~~el 564 (587)
T 3qf4_A 492 RALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LA-----DKILVLHEGKVAG-FGTHKEL 564 (587)
T ss_dssp HHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TS-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hC-----CEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999998863 69999999999985 67 5999999999985 5899887
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
.+
T Consensus 565 ~~ 566 (587)
T 3qf4_A 565 LE 566 (587)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=346.73 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=161.1
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
.-|+++||+|+|++. .++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 353 ~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 359999999999753 46899999999999999999999999999999999999999999999873 259
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCc----------CCCCCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL----------TPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~----------~~i~~LSGGqkqRv~lAr 632 (723)
+|++|++.- + ..+..+.+....+.. ..+++.+.++.+++...... ....+|||||||||+|||
T Consensus 432 ~~v~Q~~~l-f--~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 432 GIVLQDTIL-F--STTVKENLKYGNPGA----TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp EEECTTCCC-C--SSBHHHHHHSSSTTC----CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred EEEeCCCcc-c--cccHHHHHhcCCCCC----CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 999997531 1 224333332211111 12345555655555321111 122689999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+.. || +|++|++|+|+. .|+++++.
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d-----~i~~l~~G~i~~-~g~~~~l~ 577 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-AD-----LIIVLRDGEIVE-MGKHDELI 577 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CS-----EEEEECSSSEEE-CSCHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CC-----EEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999999886 4699999999999865 84 999999999985 68998875
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 578 ~ 578 (598)
T 3qf4_B 578 Q 578 (598)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=336.09 Aligned_cols=216 Identities=23% Similarity=0.303 Sum_probs=159.0
Q ss_pred cceEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAAR--GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~--~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|++. |.+|+|.+.+.++...+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~---- 413 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLK---- 413 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHH----
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHH----
Confidence 4699999999995 4689999999999999999999999999999999999875 4577888777765433221
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHH-----HHHHHHHHHhC--CCCcccc
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAA-----EAQASKILAGL--GFTKEMQ 314 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~L~~l--gl~~~~~ 314 (723)
.+++.++++++.... . ...+.+++.... .....++. ...+.+++..+ |+.. ..
T Consensus 414 ---------~~r~~i~~v~Q~~~l------f-~~tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~-~~ 473 (587)
T 3qf4_A 414 ---------DLRGHISAVPQETVL------F-SGTIKENLKWGR---EDATDDEIVEAAKIAQIHDFIISLPEGYDS-RV 473 (587)
T ss_dssp ---------HHHHHEEEECSSCCC------C-SEEHHHHHTTTC---SSCCHHHHHHHHHHTTCHHHHHTSSSGGGC-EE
T ss_pred ---------HHHhheEEECCCCcC------c-CccHHHHHhccC---CCCCHHHHHHHHHHhCcHHHHHhcccchhh-Hh
Confidence 234445555432211 0 112222221000 00000110 11223444444 5543 34
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++
T Consensus 474 ~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~ 552 (587)
T 3qf4_A 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHE 552 (587)
T ss_dssp CSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEET
T ss_pred cCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEEC
Confidence 6888999999999999999999999999999999999999999999999865 579999999999986 6999999999
Q ss_pred CEEEEecCChhhHHh
Q 048654 393 QKLHFYRGNFDDFES 407 (723)
Q Consensus 393 G~i~~~~g~~~~~~~ 407 (723)
|+++. .|+++++..
T Consensus 553 G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAG-FGTHKELLE 566 (587)
T ss_dssp TEEEE-EECHHHHHH
T ss_pred CEEEE-ECCHHHHHh
Confidence 99975 588877643
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=337.82 Aligned_cols=213 Identities=24% Similarity=0.330 Sum_probs=155.8
Q ss_pred cceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++||+|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|++.| ..|+|.+.+.++...+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~---- 413 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDVRDYKLT---- 413 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEhhhCCHH----
Confidence 46999999999974 6899999999999999999999999999999999998765 456677766655322211
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc----------
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---------- 311 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---------- 311 (723)
.+++.++++++.... ....+.+++... .. ....++++.++++.+|+.+
T Consensus 414 ---------~~~~~i~~v~Q~~~l-------~~~tv~eni~~~-----~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~ 471 (582)
T 3b5x_A 414 ---------NLRRHFALVSQNVHL-------FNDTIANNIAYA-----AE-GEYTREQIEQAARQAHAMEFIENMPQGLD 471 (582)
T ss_pred ---------HHhcCeEEEcCCCcc-------ccccHHHHHhcc-----CC-CCCCHHHHHHHHHHCCCHHHHHhCccccc
Confidence 123334444332111 011222222110 00 0111334555555555432
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 312 ~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++
T Consensus 472 t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~ 550 (582)
T 3b5x_A 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILV 550 (582)
T ss_pred chhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEE
Confidence 1224567899999999999999999999999999999999999999999999875 679999999999997 5999999
Q ss_pred EeCCEEEEecCChhhHH
Q 048654 390 LHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~~ 406 (723)
|++|+++. .|+.+++.
T Consensus 551 l~~G~i~~-~g~~~~l~ 566 (582)
T 3b5x_A 551 VDEGEIIE-RGRHADLL 566 (582)
T ss_pred EECCEEEE-ECCHHHHH
Confidence 99999974 58877654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=335.47 Aligned_cols=211 Identities=23% Similarity=0.335 Sum_probs=155.7
Q ss_pred cceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++|++|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|++. |.+|+|.+.+.++...+..
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~---- 411 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTG---- 411 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHH----
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHH----
Confidence 46999999999964 579999999999999999999999999999999999875 4577888877766433221
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-----------CCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL-----------GFT 310 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-----------gl~ 310 (723)
.+++.++++.+.... ....+.+++.. ......++++.+.++.. |+.
T Consensus 412 ---------~~r~~i~~v~Q~~~l-------~~~tv~eni~~-------~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~ 468 (578)
T 4a82_A 412 ---------SLRNQIGLVQQDNIL-------FSDTVKENILL-------GRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468 (578)
T ss_dssp ---------HHHHTEEEECSSCCC-------CSSBHHHHHGG-------GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred ---------HHhhheEEEeCCCcc-------CcccHHHHHhc-------CCCCCCHHHHHHHHHHhCcHHHHHhCcchhh
Confidence 233444554432111 01122222210 00011122333334333 333
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEE
Q 048654 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii 388 (723)
. ..++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++++.. ||+|+
T Consensus 469 t-~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~ 546 (578)
T 4a82_A 469 T-EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIV 546 (578)
T ss_dssp C-BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEE
T ss_pred h-hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEE
Confidence 2 234566799999999999999999999999999999999999999999998765 5799999999999975 99999
Q ss_pred EEeCCEEEEecCChhhHH
Q 048654 389 HLHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~~~ 406 (723)
+|++|+++. .|+++++.
T Consensus 547 ~l~~G~i~~-~g~~~el~ 563 (578)
T 4a82_A 547 VIENGHIVE-TGTHRELI 563 (578)
T ss_dssp EEETTEEEE-EECHHHHH
T ss_pred EEECCEEEE-ECCHHHHH
Confidence 999999974 58887664
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=334.76 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=158.5
Q ss_pred cceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|++. |.+|+|.+.+.++...+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~---- 413 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLA---- 413 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHH----
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHH----
Confidence 46999999999974 789999999999999999999999999999999999875 4677888877765432221
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc----------
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---------- 311 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---------- 311 (723)
.+++.++++++.... . ...+.+++... .. ....++++.++++.+|+.+
T Consensus 414 ---------~~~~~i~~v~Q~~~l------~-~~tv~eni~~~-----~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~ 471 (582)
T 3b60_A 414 ---------SLRNQVALVSQNVHL------F-NDTVANNIAYA-----RT-EEYSREQIEEAARMAYAMDFINKMDNGLD 471 (582)
T ss_dssp ---------HHHHTEEEECSSCCC------C-SSBHHHHHHTT-----TT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGG
T ss_pred ---------HHHhhCeEEccCCcC------C-CCCHHHHHhcc-----CC-CCCCHHHHHHHHHHcCCHHHHHhcccccc
Confidence 123344444332111 0 11222222110 00 0111344555565555432
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 312 ~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++
T Consensus 472 ~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~ 550 (582)
T 3b60_A 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVV 550 (582)
T ss_dssp SBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEE
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEE
Confidence 1234677899999999999999999999999999999999999999999998765 689999999999987 5999999
Q ss_pred EeCCEEEEecCChhhHH
Q 048654 390 LHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~~ 406 (723)
|++|+++. .|+++++.
T Consensus 551 l~~G~i~~-~g~~~~l~ 566 (582)
T 3b60_A 551 VEDGIIVE-RGTHSELL 566 (582)
T ss_dssp EETTEEEE-EECHHHHH
T ss_pred EECCEEEE-ecCHHHHH
Confidence 99999974 58876653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=307.82 Aligned_cols=196 Identities=25% Similarity=0.399 Sum_probs=127.1
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEE------EeeeeecCCChHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL------LVEQEVVGDDRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~------~~~q~~~~~~~~~ 238 (723)
.|+++||++. .+++|+|+||+|++|++++|+|||||||||||++|+|+..|. .|+|. |+.|.......+.
T Consensus 40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~i~~v~Q~~~l~~~tv 115 (290)
T 2bbs_A 40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQNSWIMPGTI 115 (290)
T ss_dssp ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE--EEEEECCSCEEEECSSCCCCSSBH
T ss_pred eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEEEEEeCCCccCcccH
Confidence 5899999986 368999999999999999999999999999999999987654 44443 3333322111122
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-ccccCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT-KEMQGRP 317 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~ 317 (723)
.+++. . . . . .. ..... .+... .+.+.+..+... ....+++
T Consensus 116 ~enl~-~-------------~-~---~-------~~----~~~~~---~~~~~-------~l~~~l~~~~~~~~~~~~~~ 156 (290)
T 2bbs_A 116 KENII-G-------------V-S---Y-------DE----YRYRS---VIKAC-------QLEEDISKFAEKDNIVLGEG 156 (290)
T ss_dssp HHHHH-T-------------T-C---C-------CH----HHHHH---HHHHT-------TCHHHHHTSTTGGGCBC---
T ss_pred HHHhh-C-------------c-c---c-------ch----HHHHH---HHHHh-------ChHHHHHhccccccchhcCc
Confidence 22111 0 0 0 0 00 00000 00000 112233333221 0122456
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL-CRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L-~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.+ .++ +.|||+||||++++. .||+|++|++|+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~ 235 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 235 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTE
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCe
Confidence 7899999999999999999999999999999999999999999964 333 679999999999986 599999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|+++++
T Consensus 236 i~~-~g~~~~l 245 (290)
T 2bbs_A 236 SYF-YGTFSEL 245 (290)
T ss_dssp EEE-EECHHHH
T ss_pred EEE-eCCHHHH
Confidence 964 5777665
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=337.02 Aligned_cols=213 Identities=22% Similarity=0.313 Sum_probs=157.0
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..|+++||+|+|+ ++++|+|+||+|++|+++||+||||||||||+++|+|++. |.+|+|.+.+.++...+..
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i~~~~~~----- 425 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDIRKIKRS----- 425 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEGGGSCHH-----
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEhhhCCHH-----
Confidence 4699999999996 4679999999999999999999999999999999999875 4677888877776543321
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccc---------
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM--------- 313 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~--------- 313 (723)
.+++.++++.+.... ....+.+++. .......++++.++++.+++.+..
T Consensus 426 --------~~r~~i~~v~Q~~~l-------f~~tv~eni~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 483 (598)
T 3qf4_B 426 --------SLRSSIGIVLQDTIL-------FSTTVKENLK-------YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYET 483 (598)
T ss_dssp --------HHHHHEEEECTTCCC-------CSSBHHHHHH-------SSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGC
T ss_pred --------HHHhceEEEeCCCcc-------ccccHHHHHh-------cCCCCCCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 234445555432211 0112222221 100011112334444444442211
Q ss_pred -cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 314 -QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 314 -~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
.+..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+.. ||+|++|
T Consensus 484 ~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l 562 (598)
T 3qf4_B 484 VLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVL 562 (598)
T ss_dssp BCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEE
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEE
Confidence 12344789999999999999999999999999999999999999999998765 6899999999999976 9999999
Q ss_pred eCCEEEEecCChhhHHh
Q 048654 391 HDQKLHFYRGNFDDFES 407 (723)
Q Consensus 391 ~~G~i~~~~g~~~~~~~ 407 (723)
++|+++. .|+++++..
T Consensus 563 ~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 563 RDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp CSSSEEE-CSCHHHHHH
T ss_pred ECCEEEE-ECCHHHHHh
Confidence 9999974 688877643
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=318.91 Aligned_cols=196 Identities=25% Similarity=0.336 Sum_probs=152.6
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE----EEEEeeeeecC-CChHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI----DVLLVEQEVVG-DDRSA 238 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~----~i~~~~q~~~~-~~~~~ 238 (723)
..|+++|+++.|++. .|+++||+|.+||++||+||||||||||+++|+|+..|..|.+ .+.|+.|+... ...+
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~t- 363 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGT- 363 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSB-
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCc-
Confidence 469999999999875 6999999999999999999999999999999999877665544 23444443211 0111
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
+.+.+..... .... ...++.++|+.+|+. ...++++
T Consensus 364 --------------------------------------v~~~~~~~~~--~~~~---~~~~~~~~l~~~~l~-~~~~~~~ 399 (538)
T 1yqt_A 364 --------------------------------------VYELLSKIDA--SKLN---SNFYKTELLKPLGII-DLYDREV 399 (538)
T ss_dssp --------------------------------------HHHHHHHHHH--HHHT---CHHHHHHTTTTTTCG-GGTTSBG
T ss_pred --------------------------------------HHHHHHhhhc--cCCC---HHHHHHHHHHHcCCh-hhhcCCh
Confidence 1111110000 0000 134577889999996 4568999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC--
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD-- 392 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~-- 392 (723)
.+|||||||||+|||||+.+|+||||||||+|||+.++..|.++|+++ +.|||+||||++++..+||+|++|++
T Consensus 400 ~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~ 479 (538)
T 1yqt_A 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEP 479 (538)
T ss_dssp GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999999988754 68999999999999999999999985
Q ss_pred CEEEEecCChhhHH
Q 048654 393 QKLHFYRGNFDDFE 406 (723)
Q Consensus 393 G~i~~~~g~~~~~~ 406 (723)
|++. ..|+++++.
T Consensus 480 ~~~~-~~g~~~~~~ 492 (538)
T 1yqt_A 480 GKYG-RALPPMGMR 492 (538)
T ss_dssp TTEE-EECCCEEHH
T ss_pred ceEe-ecCCHHHHH
Confidence 6664 347776653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=321.44 Aligned_cols=196 Identities=23% Similarity=0.314 Sum_probs=152.7
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE----EEEEeeeeecC-CChHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI----DVLLVEQEVVG-DDRSA 238 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~----~i~~~~q~~~~-~~~~~ 238 (723)
..|+++|+++.|++. .|+++||+|.+||++||+|||||||||||++|+|+..|..|.+ .+.|+.|+... ...+
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~t- 433 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGT- 433 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSB-
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCc-
Confidence 479999999999874 7999999999999999999999999999999999877665554 23444443211 0111
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
+.+.+...... . .....++.++|+.+|+. ...++++
T Consensus 434 --------------------------------------v~e~~~~~~~~--~---~~~~~~~~~~l~~~~l~-~~~~~~~ 469 (607)
T 3bk7_A 434 --------------------------------------VYELLSKIDSS--K---LNSNFYKTELLKPLGII-DLYDRNV 469 (607)
T ss_dssp --------------------------------------HHHHHHHHHHH--H---HHCHHHHHHTHHHHTCT-TTTTSBG
T ss_pred --------------------------------------HHHHHHhhhcc--C---CCHHHHHHHHHHHcCCc-hHhcCCh
Confidence 11111110000 0 01134677889999997 4568999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC--
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD-- 392 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~-- 392 (723)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||+|++|++
T Consensus 470 ~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~ 549 (607)
T 3bk7_A 470 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP 549 (607)
T ss_dssp GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCc
Confidence 999999999999999999999999999999999999999999998764 68999999999999999999999985
Q ss_pred CEEEEecCChhhHH
Q 048654 393 QKLHFYRGNFDDFE 406 (723)
Q Consensus 393 G~i~~~~g~~~~~~ 406 (723)
|++. ..|++.++.
T Consensus 550 g~~~-~~g~p~~~~ 562 (607)
T 3bk7_A 550 GRHG-RALPPMGMR 562 (607)
T ss_dssp TTEE-EECCCEEHH
T ss_pred ceEE-ecCCHHHHH
Confidence 6654 347776653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=330.32 Aligned_cols=200 Identities=29% Similarity=0.476 Sum_probs=157.1
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHc-CCCCCcceEEECCceeEEEEcccccccc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG-DLSPTEGEVRRSQKLRIGRYSQHFVDLL 573 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G-l~~p~~G~I~~~~~~~ig~~~q~~~~~~ 573 (723)
.|...|+++.|++ ..+|+||||+|.+|++++|+||||||||||||+|+| .+ .|. ......+++|++|.... +
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~~-~ 507 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDIDG-T 507 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCCC-C
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEcccccc-c
Confidence 4556699999975 358999999999999999999999999999999995 22 111 00112346788875321 1
Q ss_pred CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHH
Q 048654 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653 (723)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~ 653 (723)
....+...++.. ...+. .+++..+|+.|||.....++++.+|||||||||+|||||+.+|+||||||||+|||+.
T Consensus 508 ~~~ltv~e~l~~---~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~ 582 (986)
T 2iw3_A 508 HSDTSVLDFVFE---SGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV 582 (986)
T ss_dssp CTTSBHHHHHHT---TCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHH
T ss_pred ccCCcHHHHHHH---hhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 112233333322 11122 5678899999999633345788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 654 SIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 654 s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
++..|.++|++.+.|||+||||++++..+|| +|++|++|+++.+.|+++++..
T Consensus 583 ~~~~l~~~L~~~g~tvIivSHdl~~l~~~ad-----rii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 583 NVAWLVNYLNTCGITSITISHDSVFLDNVCE-----YIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHHHSCSEEEEECSCHHHHHHHCS-----EEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHhCC-----EEEEEECCeeecCCCCHHHHHh
Confidence 9999999999966799999999999999995 9999999999766789888754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=317.98 Aligned_cols=184 Identities=17% Similarity=0.251 Sum_probs=142.0
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEE-----EEEeeeeecC-CChH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID-----VLLVEQEVVG-DDRS 237 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~-----i~~~~q~~~~-~~~~ 237 (723)
..++++|+++.|++ ..|.++||+|++||++||+||||||||||+++|+|+..|..|.+. +.++.|.+.. ...+
T Consensus 268 ~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~t 346 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGT 346 (538)
T ss_dssp EEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSB
T ss_pred ceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCC
Confidence 46899999999987 458888999999999999999999999999999998876655442 2233222211 0111
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
. .+.+.. ............+.++++.+|+. ...+++
T Consensus 347 v---------------------------------------~~~l~~----~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 382 (538)
T 3ozx_A 347 V---------------------------------------QQYLEN----ASKDALSTSSWFFEEVTKRLNLH-RLLESN 382 (538)
T ss_dssp H---------------------------------------HHHHHH----HCSSTTCTTSHHHHHTTTTTTGG-GCTTSB
T ss_pred H---------------------------------------HHHHHH----hhhhccchhHHHHHHHHHHcCCH-HHhcCC
Confidence 1 111100 00000001123467788899996 456899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 383 ~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999988754 67999999999999999999999986
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=345.07 Aligned_cols=203 Identities=28% Similarity=0.374 Sum_probs=158.9
Q ss_pred CeEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.-|+++||+|+|+++ ..++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 359999999999754 246899999999999999999999999999999999999999999999874 25
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCC-----------CCCCCCcCCCCCCCHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-----------LPSHNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g-----------l~~~~~~~~i~~LSGGqkqRv~l 630 (723)
++|++|++.- ...++.+.+....+.. ..+.+.+.++..+ +.... .....+|||||||||+|
T Consensus 466 i~~v~Q~~~l---~~~ti~eNi~~g~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq~Qriai 537 (1284)
T 3g5u_A 466 IGVVSQEPVL---FATTIAENIRYGREDV----TMDEIEKAVKEANAYDFIMKLPHQFDTLV-GERGAQLSGGQKQRIAI 537 (1284)
T ss_dssp EEEECSSCCC---CSSCHHHHHHHHCSSC----CHHHHHHHHHHTTCHHHHHHSTTGGGCCC-SSSSCSSCHHHHHHHHH
T ss_pred eEEEcCCCcc---CCccHHHHHhcCCCCC----CHHHHHHHHHHhCcHHHHHhccccccccc-cCCCCccCHHHHHHHHH
Confidence 9999998531 1123333332222211 1233333333332 22212 23456899999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|+||||||||++||+.+...+.+.|+.. +.|+|+|||+++.+.. | |+|++|++|+|++ .|++++
T Consensus 538 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~-----d~i~vl~~G~i~~-~g~~~~ 610 (1284)
T 3g5u_A 538 ARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-A-----DVIAGFDGGVIVE-QGNHDE 610 (1284)
T ss_dssp HHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-C-----SEEEECSSSCCCC-EECHHH
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-C-----CEEEEEECCEEEE-ECCHHH
Confidence 99999999999999999999999999999998765 4699999999999965 7 5999999999974 689888
Q ss_pred HHH
Q 048654 709 YKE 711 (723)
Q Consensus 709 ~~~ 711 (723)
+.+
T Consensus 611 l~~ 613 (1284)
T 3g5u_A 611 LMR 613 (1284)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-32 Score=342.56 Aligned_cols=203 Identities=26% Similarity=0.323 Sum_probs=162.0
Q ss_pred CeEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.-|+++||+|+|+++ ..++|+||||+|++|+.+|||||+|||||||+++|.|+++|++|+|.+++. ..
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 359999999999754 357899999999999999999999999999999999999999999999873 36
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCC-------CCCC---cCCCCCCCHHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP-------SHNH---LTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~-------~~~~---~~~i~~LSGGqkqRv~lA 631 (723)
++|++|++. ....++.+.+....+.. ..+++.++++..++. .-.. ...-..||||||||++||
T Consensus 494 i~~v~Q~~~---Lf~~TI~eNI~~g~~~~----~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiA 566 (1321)
T 4f4c_A 494 VAVVSQEPA---LFNCTIEENISLGKEGI----TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA 566 (1321)
T ss_dssp EEEECSSCC---CCSEEHHHHHHTTCTTC----CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHH
T ss_pred ccccCCcce---eeCCchhHHHhhhcccc----hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHH
Confidence 999999753 12233333332222221 345566666665542 1111 112357999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||++++|+||||||||++||.++...+.+.|.++ +.|+|+|||++..+. .| |+|++|++|+|++ .|+++++
T Consensus 567 RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~a-----D~Iivl~~G~ive-~Gth~eL 639 (1321)
T 4f4c_A 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NA-----DLIISCKNGQVVE-VGDHRAL 639 (1321)
T ss_dssp HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TC-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hC-----CEEEEeeCCeeec-cCCHHHH
Confidence 9999999999999999999999999999999886 479999999999885 46 5999999999986 5898886
Q ss_pred H
Q 048654 710 K 710 (723)
Q Consensus 710 ~ 710 (723)
.
T Consensus 640 ~ 640 (1321)
T 4f4c_A 640 M 640 (1321)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-32 Score=311.90 Aligned_cols=193 Identities=21% Similarity=0.289 Sum_probs=147.2
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCC-----cEEEEECCCCccHHHHHHHHHhCCCCCCCc----EEEEEeeeeecC-CChH
Q 048654 169 DNFSVAARG-KELLKSTSVRISHG-----KRYGLVGPNGMGKSTLLKLLAWRKIPVPKN----IDVLLVEQEVVG-DDRS 237 (723)
Q Consensus 169 ~nls~~y~~-~~vL~~isl~i~~G-----e~~~LvG~NGsGKSTLlk~L~G~~~~~~~~----~~i~~~~q~~~~-~~~~ 237 (723)
.+++++|++ ..+|+++||++.+| |++||+||||||||||+++|+|+..|..|. ..+.++.|.+.. ...+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSB
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCcc
Confidence 567888876 46899999999999 789999999999999999999998766553 124444443221 1111
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
..+. + ...+ .........+.++++.+|+.. ..+++
T Consensus 430 v~e~---------------------------------------~---~~~~--~~~~~~~~~~~~~l~~l~l~~-~~~~~ 464 (608)
T 3j16_B 430 VRQL---------------------------------------F---FKKI--RGQFLNPQFQTDVVKPLRIDD-IIDQE 464 (608)
T ss_dssp HHHH---------------------------------------H---HHHC--SSTTTSHHHHHHTHHHHTSTT-TSSSB
T ss_pred HHHH---------------------------------------H---HHHh--hcccccHHHHHHHHHHcCChh-hhcCC
Confidence 1100 0 0000 000011234567889999974 56899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC-
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD- 392 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~- 392 (723)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 465 ~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~ 544 (608)
T 3j16_B 465 VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544 (608)
T ss_dssp SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEE
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998888754 68999999999999999999999996
Q ss_pred -CEEEEecCChhhHHh
Q 048654 393 -QKLHFYRGNFDDFES 407 (723)
Q Consensus 393 -G~i~~~~g~~~~~~~ 407 (723)
|++. ..|++.++..
T Consensus 545 ~g~~~-~~g~p~~~~~ 559 (608)
T 3j16_B 545 PSKNA-HARAPESLLT 559 (608)
T ss_dssp TTTEE-ECCCCEEHHH
T ss_pred CCeEE-ecCChHHHhh
Confidence 7775 4677777644
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=306.71 Aligned_cols=193 Identities=24% Similarity=0.352 Sum_probs=129.6
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCcceEE-------ECCc---
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLL---------------------NLLAGDLSPTEGEVR-------RSQK--- 559 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLl---------------------k~L~Gl~~p~~G~I~-------~~~~--- 559 (723)
.+|+||||+|++|+++||+||||||||||+ +++.|+..|+.|.|. +.+.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 479999999999999999999999999998 899999999866553 3221
Q ss_pred ----eeEEEEccccc---------------------cccCccccHHHHHHhhC-CCCCC-Cc-----HHHHHHHHHHhCC
Q 048654 560 ----LRIGRYSQHFV---------------------DLLTMEETPVSYLLRLH-PDQEG-LS-----KQEAVRAKLGKFG 607 (723)
Q Consensus 560 ----~~ig~~~q~~~---------------------~~~~~~~~~~~~~~~~~-~~~~~-~~-----~~~~~~~~L~~~g 607 (723)
..+++++|.+. ..+++.++... ..... ..... .. .......+|+.+|
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAF-FDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHTT
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHH-hhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 12233333211 01122222110 00000 00000 00 0011123588899
Q ss_pred CCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHh
Q 048654 608 LPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRV 682 (723)
Q Consensus 608 l~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~ 682 (723)
|.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|.++|+++ +.|||+||||++++. .
T Consensus 191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~ 269 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-A 269 (670)
T ss_dssp CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-H
T ss_pred CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-h
Confidence 97654557889999999999999999999998 99999999999999999999999876 469999999999876 5
Q ss_pred cCcCCCcEEEEE------ECCeEEecCCCHHHHHH
Q 048654 683 CDDEERSEIWVV------ENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 683 ~d~~~~drv~vl------~~G~i~~~~g~~~~~~~ 711 (723)
|| +|++| ++|+++ +.|+++++..
T Consensus 270 ~d-----~ii~l~~g~~~~~G~i~-~~g~~~~~~~ 298 (670)
T 3ux8_A 270 AD-----YLIDIGPGAGIHGGEVV-AAGTPEEVMN 298 (670)
T ss_dssp CS-----EEEEECSSSGGGCCSEE-EEECHHHHHT
T ss_pred CC-----EEEEecccccccCCEEE-EecCHHHHhc
Confidence 84 99999 899997 5688887653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=288.50 Aligned_cols=108 Identities=26% Similarity=0.348 Sum_probs=95.2
Q ss_pred HHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 048654 297 EAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ---PTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTL 370 (723)
Q Consensus 297 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~---P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TV 370 (723)
..++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+.++..|.++|+++ +.||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 357889999999975445789999999999999999999996 7999999999999999999999888754 6899
Q ss_pred EEEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHH
Q 048654 371 VVVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFE 406 (723)
Q Consensus 371 IivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~ 406 (723)
|+||||++++ .+||+|++| ++|+|+ +.|+++++.
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 9999999999 689999999 689996 458877654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=280.22 Aligned_cols=110 Identities=30% Similarity=0.437 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcE
Q 048654 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP---TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKT 369 (723)
Q Consensus 296 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P---~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~T 369 (723)
...++.++|+.+||.....++++.+|||||||||+|||||+.+| +||||||||+|||+.++..|++.|+++ +.|
T Consensus 781 ~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~T 860 (916)
T 3pih_A 781 SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNT 860 (916)
T ss_dssp HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCE
Confidence 34677889999999754557899999999999999999999876 799999999999999999999998765 689
Q ss_pred EEEEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHh
Q 048654 370 LVVVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFES 407 (723)
Q Consensus 370 VIivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~ 407 (723)
||+||||++++.. ||+|++| ++|+|+ +.|+++++..
T Consensus 861 VIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 861 VIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp EEEECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred EEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 9999999999876 9999999 899997 4688877643
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-31 Score=293.79 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=153.1
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-e-EEECCc--eeEEEEccc
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG-E-VRRSQK--LRIGRYSQH 568 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G-~-I~~~~~--~~ig~~~q~ 568 (723)
.++++++||++.|+ ++||+|.+|++++|+||||||||||+|+|+|+++|++| + |++++. ..+++++|.
T Consensus 116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~ 187 (460)
T 2npi_A 116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGC 187 (460)
T ss_dssp CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSC
T ss_pred cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccc
Confidence 46788899988874 68999999999999999999999999999999999999 8 988763 357888886
Q ss_pred cc-----cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH--HccCCCe-
Q 048654 569 FV-----DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI--SMSKPHI- 640 (723)
Q Consensus 569 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra--l~~~p~l- 640 (723)
.. ..+++.++. +..... .+......+..++..+|+..... +.+|||||||||+|||+ |+.+|+|
T Consensus 188 ~~l~~~~~~~tv~eni--~~~~~~---~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~ 259 (460)
T 2npi_A 188 ISATPISDILDAQLPT--WGQSLT---SGATLLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVR 259 (460)
T ss_dssp CEEEECCSCCCTTCTT--CSCBCB---SSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hhhcccccccchhhhh--cccccc---cCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccC
Confidence 42 112333332 111100 01001123445678889875432 57999999999999999 9999999
Q ss_pred ---EEecc-CCCCCCHHHHHHHHHHHHHcCceEEEEecCHH------HHHHhcCcCCCcE-----EEEEE-CCeEEecCC
Q 048654 641 ---LLLDE-PTNHLDMQSIDALADALDEFTGGVVLVSHDSR------LISRVCDDEERSE-----IWVVE-NGTVSRFPG 704 (723)
Q Consensus 641 ---LlLDE-PT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~------~~~~~~d~~~~dr-----v~vl~-~G~i~~~~g 704 (723)
||||| ||++||+. ...|.+++++++.++|+||||.+ ++..+|| + |++|+ +|+|+ .|
T Consensus 260 ~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~d-----r~~~~~vi~l~k~G~iv--~g 331 (460)
T 2npi_A 260 RSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGP-----ELGNNNIFFIPKLDGVS--AV 331 (460)
T ss_dssp HSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHH-----HHCGGGEEEECCCTTCC--CC
T ss_pred cceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcc-----cccCCEEEEEeCCCcEE--EC
Confidence 99999 99999999 88888999998889999999988 8888984 8 99999 99996 58
Q ss_pred CHHHHH
Q 048654 705 TFEEYK 710 (723)
Q Consensus 705 ~~~~~~ 710 (723)
+++++.
T Consensus 332 ~~~~~~ 337 (460)
T 2npi_A 332 DDVYKR 337 (460)
T ss_dssp CHHHHH
T ss_pred CHHHHh
Confidence 887764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=274.63 Aligned_cols=108 Identities=28% Similarity=0.433 Sum_probs=94.0
Q ss_pred HHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEE
Q 048654 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP---TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLV 371 (723)
Q Consensus 298 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P---~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVI 371 (723)
.++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456789999999753567999999999999999999999875 999999999999999999999988754 68999
Q ss_pred EEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHh
Q 048654 372 VVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFES 407 (723)
Q Consensus 372 ivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~ 407 (723)
+||||++++. +||+|++| ++|+|+ +.|+++++..
T Consensus 903 visHdl~~i~-~aDrIivL~p~gG~~~G~Iv-~~g~~~el~~ 942 (972)
T 2r6f_A 903 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVAE 942 (972)
T ss_dssp EECCCHHHHT-TCSEEEEECSSSTTSCCSEE-EEESHHHHHT
T ss_pred EEcCCHHHHH-hCCEEEEEcCCCCCCCCEEE-EecCHHHHHh
Confidence 9999999985 79999999 689996 4588776643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=259.74 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=71.9
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEE----eC
Q 048654 321 FSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHL----HD 392 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L----~~ 392 (723)
|||||||||+||++|+.+| +||||||||+|||+.++.+|.++|+++ +.|||+||||++++ .+||+|++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 58999999999887 479999999 99
Q ss_pred CEEEEe
Q 048654 393 QKLHFY 398 (723)
Q Consensus 393 G~i~~~ 398 (723)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=255.54 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHccCC--CeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEE-
Q 048654 620 LSGGQKARVVFTSISMSKP--HILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVV- 694 (723)
Q Consensus 620 LSGGqkqRv~lAral~~~p--~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl- 694 (723)
|||||||||+||++|+.+| +||||||||+|||+.+...|.++|+++. .+||+||||++++ .+| |++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~-----d~i~~l~ 369 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARA-----HHHYKVE 369 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTC-----SEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhc-----CeEEEEE
Confidence 5999999999999999999 9999999999999999999999999985 7999999999887 568 499999
Q ss_pred ---ECCeEEe
Q 048654 695 ---ENGTVSR 701 (723)
Q Consensus 695 ---~~G~i~~ 701 (723)
++|+++.
T Consensus 370 k~~~~G~~~~ 379 (415)
T 4aby_A 370 KQVEDGRTVS 379 (415)
T ss_dssp EEEETTEEEE
T ss_pred EeccCCceEE
Confidence 9999863
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-25 Score=239.58 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=75.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCC
Q 048654 315 GRPTKSFSGGWRMRISLARALF------VQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~------~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad 385 (723)
++++.+|||||||||+||+||+ .+|+||||||||++||+.++.++.++|+++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 4688899999999999999999 799999999999999999999999999865 5799999999998 56799
Q ss_pred EEEEEeCCEEE
Q 048654 386 EIIHLHDQKLH 396 (723)
Q Consensus 386 ~Ii~L~~G~i~ 396 (723)
+|++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999985
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-28 Score=274.03 Aligned_cols=200 Identities=14% Similarity=0.105 Sum_probs=138.5
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE-E-EEEeeeeecCCChHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI-D-VLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~-~-i~~~~q~~~~~~~~~~~ 240 (723)
.++|+++||++.|+ ++||++.+|++++|+||||||||||+|+|+|+..+. .| . |.+.+ ++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~--~G~~pI~vdg-~~~-------- 178 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF--NAYQPLYINL-DPQ-------- 178 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH--HCCCCEEEEC-CTT--------
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc--CCceeEEEcC-Ccc--------
Confidence 44688999999886 799999999999999999999999999999987554 34 4 44332 110
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+.+.++.+.......... ..+.+++ .. ...........++..+++.+|+... .+ +.+
T Consensus 179 -------------~~i~~vpq~~~l~~~~~~---~tv~eni-~~---~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~ 235 (460)
T 2npi_A 179 -------------QPIFTVPGCISATPISDI---LDAQLPT-WG---QSLTSGATLLHNKQPMVKNFGLERI-NE--NKD 235 (460)
T ss_dssp -------------SCSSSCSSCCEEEECCSC---CCTTCTT-CS---CBCBSSCCSSCCBCCEECCCCSSSG-GG--CHH
T ss_pred -------------CCeeeeccchhhcccccc---cchhhhh-cc---cccccCcchHHHHHHHHHHhCCCcc-cc--hhh
Confidence 001111110000000000 0000000 00 0000000011234556778888643 33 789
Q ss_pred CChHHHHHHHHHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHH------HHHhhCCE-
Q 048654 321 FSGGWRMRISLARA--LFVQPTL----LLLDE-PTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRD------FLNTVCTE- 386 (723)
Q Consensus 321 LSGGqrQRvaLArA--L~~~P~l----LLLDE-PT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~------~l~~iad~- 386 (723)
|||||||||+|||| |+.+|+| ||||| ||++||+. ...|.+++++++.|+|+|+||.+ ++..+||+
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~ 314 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPEL 314 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccc
Confidence 99999999999999 9999999 99999 99999999 88888888888999999999987 88899999
Q ss_pred ----EEEEe-CCEEEEecCChhhH
Q 048654 387 ----IIHLH-DQKLHFYRGNFDDF 405 (723)
Q Consensus 387 ----Ii~L~-~G~i~~~~g~~~~~ 405 (723)
|++|+ +|+++ .|+.+.+
T Consensus 315 ~~~~vi~l~k~G~iv--~g~~~~~ 336 (460)
T 2npi_A 315 GNNNIFFIPKLDGVS--AVDDVYK 336 (460)
T ss_dssp CGGGEEEECCCTTCC--CCCHHHH
T ss_pred cCCEEEEEeCCCcEE--ECCHHHH
Confidence 99999 99986 5666443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-26 Score=232.59 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=95.9
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC--------CceeEEEEcccccccc-CccccHHH
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS--------QKLRIGRYSQHFVDLL-TMEETPVS 581 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~--------~~~~ig~~~q~~~~~~-~~~~~~~~ 581 (723)
.+|++| .+|++++|+||||||||||+++|+|+ +|++|+|... .+..++|++|...+.+ ........
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~ 88 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHD 88 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHH
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHH
Confidence 578885 89999999999999999999999999 9999998431 1224777777642222 11100000
Q ss_pred HHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHH
Q 048654 582 YLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661 (723)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~ 661 (723)
...... ....+.++++. ++ ||||||+|||||+.+|+||||||||++ ++..+.++
T Consensus 89 ---~~~~~~----~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~ 142 (208)
T 3b85_A 89 ---ALRDMV----EPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMF 142 (208)
T ss_dssp ---HHTTTS----CTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHH
T ss_pred ---HHHHhc----cHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHH
Confidence 111100 12345566665 43 999999999999999999999999999 88889999
Q ss_pred HHHc--CceEEEEecCHHHHH
Q 048654 662 LDEF--TGGVVLVSHDSRLIS 680 (723)
Q Consensus 662 L~~~--~~tVIivSHD~~~~~ 680 (723)
|.++ +.||| ||||++++.
T Consensus 143 l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 143 LTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp HTTBCTTCEEE-EEEC-----
T ss_pred HHHhcCCCEEE-EECCHHHHh
Confidence 9887 35788 999999876
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-25 Score=215.28 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=62.2
Q ss_pred hCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHHhh---c
Q 048654 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR----------------AVLWLEEYLCR---W 366 (723)
Q Consensus 306 ~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~----------------~~~~L~~~L~~---~ 366 (723)
..|+.... ......|||||||++|||||+.+|++|+|||||++||+. ....+.+.|++ .
T Consensus 71 ~~g~~~~~--~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~ 148 (171)
T 4gp7_A 71 QLGKLTVV--DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE 148 (171)
T ss_dssp HTTCCEEE--ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH
T ss_pred hCCCeEEE--ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc
Confidence 44654322 234567999999999999999999999999999999999 55777877543 3
Q ss_pred CcEEEEEeCCHHHHHhh
Q 048654 367 KKTLVVVSHDRDFLNTV 383 (723)
Q Consensus 367 ~~TVIivsHdl~~l~~i 383 (723)
+.|+|+||||++++..+
T Consensus 149 g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 149 GFRYVYILNSPEEVEEV 165 (171)
T ss_dssp TCSEEEEECSHHHHHHE
T ss_pred CCcEEEEeCCHHHhhhh
Confidence 78999999999999863
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-24 Score=236.12 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=73.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHc------cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCc
Q 048654 615 TPIAKLSGGQKARVVFTSISM------SKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDD 685 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral~------~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~ 685 (723)
+++.+|||||||||+||+||+ .+|+||||||||+|||+.+...+.+.|.++. .|||+||||+++ ...||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d- 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD- 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS-
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC-
Confidence 567899999999999999999 7999999999999999999999999998873 699999999998 56674
Q ss_pred CCCcEEEEEECCeEE
Q 048654 686 EERSEIWVVENGTVS 700 (723)
Q Consensus 686 ~~~drv~vl~~G~i~ 700 (723)
+|++|++|+|+
T Consensus 353 ----~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 ----RKLRITGGVVV 363 (365)
T ss_dssp ----CEEEEETTEEC
T ss_pred ----EEEEEECCEEE
Confidence 89999999985
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-25 Score=214.35 Aligned_cols=147 Identities=13% Similarity=0.110 Sum_probs=97.0
Q ss_pred ceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCc
Q 048654 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS 594 (723)
Q Consensus 515 ~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (723)
||||+|++|++++|+||||||||||++++.+-. .........++++|...... +......
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~~~d~~~g~~~~~~~~~~-~~~~~~~------------- 60 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVISSDFCRGLMSDDENDQT-VTGAAFD------------- 60 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEEEHHHHHHHHCSSTTCGG-GHHHHHH-------------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEEccHHHHHHhcCcccchh-hHHHHHH-------------
Confidence 689999999999999999999999999865321 11111111133333211100 0000000
Q ss_pred HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHH----------------HHHHH
Q 048654 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ----------------SIDAL 658 (723)
Q Consensus 595 ~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~----------------s~~~l 658 (723)
............|...... ....+||||||||+|||+++.+|++|+|||||++||+. ....+
T Consensus 61 ~~~~~~~~~~~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l 138 (171)
T 4gp7_A 61 VLHYIVSKRLQLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM 138 (171)
T ss_dssp HHHHHHHHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh
Confidence 0001111222345432222 23567999999999999999999999999999999999 55777
Q ss_pred HHHHHHc---CceEEEEecCHHHHHHhc
Q 048654 659 ADALDEF---TGGVVLVSHDSRLISRVC 683 (723)
Q Consensus 659 ~~~L~~~---~~tVIivSHD~~~~~~~~ 683 (723)
.+.|+++ +.|||+||||++++..++
T Consensus 139 ~~~l~~l~~~g~tvi~vtH~~~~~~~~~ 166 (171)
T 4gp7_A 139 KKSIKGLQREGFRYVYILNSPEEVEEVV 166 (171)
T ss_dssp HHHSTTHHHHTCSEEEEECSHHHHHHEE
T ss_pred hhhhhhHHhcCCcEEEEeCCHHHhhhhh
Confidence 8875543 569999999999998654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-23 Score=206.79 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-cceEEE-----CCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHH
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPT-EGEVRR-----SQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~-~G~I~~-----~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (723)
+++|+||||||||||+++|+|++... .|.... ....++||++|.. +..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~----~~~~~~------------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT----EGKKKI------------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET----TCCEEE-------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC----cHHHHH-------------------
Confidence 68999999999999999999998522 232211 1123467776653 111111
Q ss_pred HHHHHHhCCCCC-CCCcCCCCCCCHHHHHHHHHHHH-----HccCCCeEEecc--CCCCCCHHHHHHHHHHHHHcCceEE
Q 048654 599 VRAKLGKFGLPS-HNHLTPIAKLSGGQKARVVFTSI-----SMSKPHILLLDE--PTNHLDMQSIDALADALDEFTGGVV 670 (723)
Q Consensus 599 ~~~~L~~~gl~~-~~~~~~i~~LSGGqkqRv~lAra-----l~~~p~lLlLDE--PT~~LD~~s~~~l~~~L~~~~~tVI 670 (723)
+..++... ....+++.+|||||||||+||++ ++.+|+|||||| ||++||+.....+.++|.+.+.++|
T Consensus 59 ----~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i 134 (178)
T 1ye8_A 59 ----FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVV 134 (178)
T ss_dssp ----EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEE
T ss_pred ----HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEE
Confidence 00111111 12235567899999999999996 999999999999 9999999999999999988766788
Q ss_pred EEe---cCHHHHHHhcCcCCCcEEEEEECCeEEecC-CCHHHHHHHHHHHH
Q 048654 671 LVS---HDSRLISRVCDDEERSEIWVVENGTVSRFP-GTFEEYKEDLQREI 717 (723)
Q Consensus 671 ivS---HD~~~~~~~~d~~~~drv~vl~~G~i~~~~-g~~~~~~~~~~~~~ 717 (723)
++| ||.+++..+|+ + .+|+|..+. .+.+++.+++.+.+
T Consensus 135 ~~~H~~h~~~~~~~i~~-----r----~~~~i~~~~~~~r~~~~~~l~~~~ 176 (178)
T 1ye8_A 135 ATIPIRDVHPLVKEIRR-----L----PGAVLIELTPENRDVILEDILSLL 176 (178)
T ss_dssp EECCSSCCSHHHHHHHT-----C----TTCEEEECCTTTTTTHHHHHHHHS
T ss_pred EEEccCCCchHHHHHHh-----c----CCcEEEEecCcCHHHHHHHHHHHH
Confidence 888 59999999996 2 345554332 33455555555443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=214.38 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=75.8
Q ss_pred cCCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEE
Q 048654 314 QGRPTKSFSGGWRMRISLARALF----VQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEI 387 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~----~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~I 387 (723)
.+.++..|||||||||+||+||+ .+|+||||||||++||+..+.+|.++|+++ +.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 35678899999999999999997 689999999999999999999999999876 569999999975 55689987
Q ss_pred --EEEeCCEEEEecCChh
Q 048654 388 --IHLHDQKLHFYRGNFD 403 (723)
Q Consensus 388 --i~L~~G~i~~~~g~~~ 403 (723)
++|.+|.........+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 8888887765544443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=215.46 Aligned_cols=89 Identities=22% Similarity=0.307 Sum_probs=72.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHc----cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCC
Q 048654 614 LTPIAKLSGGQKARVVFTSISM----SKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEE 687 (723)
Q Consensus 614 ~~~i~~LSGGqkqRv~lAral~----~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~ 687 (723)
..++..|||||||||+||++|+ .+|+||||||||++||+.....|.++|.++. .+||+|||+.+ +..+||
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d--- 289 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAAD--- 289 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCS---
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCc---
Confidence 3567899999999999999997 6889999999999999999999999999883 58999999975 456785
Q ss_pred CcEE--EEEECCeEEecCCCHHH
Q 048654 688 RSEI--WVVENGTVSRFPGTFEE 708 (723)
Q Consensus 688 ~drv--~vl~~G~i~~~~g~~~~ 708 (723)
++ ++|.+|.........++
T Consensus 290 --~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 290 --LLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp --EEEEEEESSSCEEEEECCC--
T ss_pred --eEEEEEEeCCEEEEEEEEcch
Confidence 55 77888876544344443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.7e-25 Score=220.34 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=93.4
Q ss_pred EeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHH
Q 048654 174 AARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR 253 (723)
Q Consensus 174 ~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~ 253 (723)
+|+++.+|+|| ++|++++|+|||||||||||++|+|+ .|..|.+......... ... +
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~--~~~----------------~ 65 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPA--VEA----------------G 65 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECS--CCT----------------T
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCc--hhh----------------h
Confidence 36677899996 89999999999999999999999998 7666655221111000 000 0
Q ss_pred HHHHhhhcCcCCCCCCCCCchh-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHH
Q 048654 254 EEVASLQNSTSVDGEEDGDDAN-DAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLA 332 (723)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLA 332 (723)
..++++.+. +.+.. .... ..+..+... ....++.++++. |+ ||||||+||
T Consensus 66 ~~ig~v~q~--------~~enl~~~~~---~~~~~~~~~---~~~~~~~~~l~~-gl--------------Gq~qrv~lA 116 (208)
T 3b85_A 66 EKLGFLPGT--------LNEKIDPYLR---PLHDALRDM---VEPEVIPKLMEA-GI--------------VEVAPLAYM 116 (208)
T ss_dssp CCCCSSCC--------------CTTTH---HHHHHHTTT---SCTTHHHHHHHT-TS--------------EEEEEGGGG
T ss_pred cceEEecCC--------HHHHHHHHHH---HHHHHHHHh---ccHHHHHHHHHh-CC--------------chHHHHHHH
Confidence 001111110 00000 0000 001111100 012345555654 43 999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 333 RALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 333 rAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
|||+.+|+||||||||++ ++.++.++|+++ +.||| ||||++++.. +..+++|.
T Consensus 117 raL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 117 RGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp TTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred HHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 999999999999999999 888888888876 56888 9999987653 33455653
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=204.09 Aligned_cols=80 Identities=31% Similarity=0.463 Sum_probs=69.9
Q ss_pred CCCCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCC
Q 048654 315 GRPTKSFSGGWRM------RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 315 ~~~~~~LSGGqrQ------RvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad 385 (723)
++++.+||||||| |+++|++|+.+|+||||||||+|||+..+..|.++|.++ +.|||+||||.+ +..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence 5788999999999 678888999999999999999999999999999998765 469999999966 567899
Q ss_pred EEEEEe--CCEE
Q 048654 386 EIIHLH--DQKL 395 (723)
Q Consensus 386 ~Ii~L~--~G~i 395 (723)
+|++|+ +|..
T Consensus 322 ~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 HVIRISLENGSS 333 (339)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCcc
Confidence 999986 4543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-22 Score=197.11 Aligned_cols=80 Identities=8% Similarity=-0.017 Sum_probs=71.3
Q ss_pred cCCCCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCcEEEEEe---CCHHHHHhh
Q 048654 314 QGRPTKSFSGGWRMRISLARA-----LFVQPTLLLLDE--PTNHLDLRAVLWLEEYLCRWKKTLVVVS---HDRDFLNTV 383 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArA-----L~~~P~lLLLDE--PT~~LD~~~~~~L~~~L~~~~~TVIivs---Hdl~~l~~i 383 (723)
.++++.+||||||||++||+| |+.+|+|||||| ||++||+....+|.++|.+.+.|+|+++ ||++++..+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 467888999999999999996 999999999999 9999999999999999988777788888 599999999
Q ss_pred CCEEEEEeCCEEEE
Q 048654 384 CTEIIHLHDQKLHF 397 (723)
Q Consensus 384 ad~Ii~L~~G~i~~ 397 (723)
|++ .+|+++.
T Consensus 150 ~~r----~~~~i~~ 159 (178)
T 1ye8_A 150 RRL----PGAVLIE 159 (178)
T ss_dssp HTC----TTCEEEE
T ss_pred Hhc----CCcEEEE
Confidence 998 4556543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-24 Score=234.23 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=123.7
Q ss_pred cceeceEEEEecCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce--eEEEEccc
Q 048654 511 FKLSDVDVGIDMGT--------------------RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL--RIGRYSQH 568 (723)
Q Consensus 511 ~~L~~isl~i~~Ge--------------------~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~--~ig~~~q~ 568 (723)
.+|++|||+|++|+ +++|+||||||||||+|+|+|+++|++|+|...+.. +.++++|.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 47999999999999 999999999999999999999999999999876532 12667775
Q ss_pred cc-cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHH--HHHHHHHHHHHcc---------
Q 048654 569 FV-DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGG--QKARVVFTSISMS--------- 636 (723)
Q Consensus 569 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGG--qkqRv~lAral~~--------- 636 (723)
.. ..+++.+++. ... ....+.++|+.+++.... ..+ . |||| |+||+.||++|+.
T Consensus 117 ~~~~~ltv~D~~g-----~~~------~~~~~~~~L~~~~L~~~~-~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~ 182 (413)
T 1tq4_A 117 PNIPNVVFWDLPG-----IGS------TNFPPDTYLEKMKFYEYD-FFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVR 182 (413)
T ss_dssp SSCTTEEEEECCC-----GGG------SSCCHHHHHHHTTGGGCS-EEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccCCeeehHhhc-----ccc------hHHHHHHHHHHcCCCccC-CeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 31 1233333321 000 012367789999986532 233 3 9999 9999999999999
Q ss_pred -CCCeEEeccCCCCCCHHHHHHHHHHHHHcC------------ceEEEEecCHHH--HHHhcC
Q 048654 637 -KPHILLLDEPTNHLDMQSIDALADALDEFT------------GGVVLVSHDSRL--ISRVCD 684 (723)
Q Consensus 637 -~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~------------~tVIivSHD~~~--~~~~~d 684 (723)
+|++|||||||+|||+.++..+.+.|+++. .+|+++||++.. +..+||
T Consensus 183 tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp CCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHH
T ss_pred ecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHH
Confidence 999999999999999999988888876651 358889999887 888885
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-20 Score=199.20 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=76.5
Q ss_pred CCCCC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhC
Q 048654 315 GRPTK-SFSGGWRMRISLARALF---------VQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 315 ~~~~~-~LSGGqrQRvaLArAL~---------~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~ia 384 (723)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.++|.++..|+|++||. +. +|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 46777 89999999999999999 8999999999999999999999999999877899999994 43 79
Q ss_pred CEEEEEeCCEEEEecCChhhH
Q 048654 385 TEIIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 385 d~Ii~L~~G~i~~~~g~~~~~ 405 (723)
|++++|++|+++. .|+++++
T Consensus 335 ~~i~~l~~G~i~~-~g~~~~~ 354 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEEMQ 354 (359)
T ss_dssp SEEEEEETTEEEE-CCCTTTS
T ss_pred CEEEEEECCEEEe-cCCHHHH
Confidence 9999999999964 4666543
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-24 Score=225.67 Aligned_cols=162 Identities=20% Similarity=0.207 Sum_probs=117.6
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccccc-cc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVD-LL 573 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~-~~ 573 (723)
+|+++||+|.|+ ..+|++|||+|++|++++|+||||||||||+++|+|++ +|+|. ++++|...- ..
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-------~~v~q~~~lf~~ 167 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-------SFANHKSHFWLA 167 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------CGGGTTSGGGGG
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------EEecCccccccc
Confidence 478889999996 35899999999999999999999999999999999998 89984 345554210 01
Q ss_pred Cccc-cHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCH
Q 048654 574 TMEE-TPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652 (723)
Q Consensus 574 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~ 652 (723)
++.+ +. .+.+.. ...+...+..+ |+.... ...|||||||| ||||+.+|+||| |++||+
T Consensus 168 ti~~~ni-----~~~~~~-----~~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 168 SLADTRA-----ALVDDA-----THACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp GGTTCSC-----EEEEEE-----CHHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred cHHHHhh-----ccCccc-----cHHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 1111 10 111110 11345556654 433222 47899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 653 QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 653 ~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
.+...+.. +||++..+ .+| |+| +|++|+|+ ..|+++++
T Consensus 227 ~~~~~i~~-----------ltH~~~~~-~~a-----D~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 227 QAEDRYLY-----------LHSRVQTF-RFE-----QPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp TTCGGGGG-----------GTTTEEEE-ECC-----CCC-CCC---CC-CCCCHHHH
T ss_pred HHHHHHHH-----------HhCCHHHH-HhC-----CEE-EEeCCEEE-EeCCHHHH
Confidence 98877752 29998875 466 589 99999997 57999887
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-24 Score=227.07 Aligned_cols=162 Identities=15% Similarity=0.065 Sum_probs=112.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEE-eeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL-VEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~-~~q~~~~~~~~~~~~~~ 243 (723)
.|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ .|.|.. +.|.......+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~~~v~q~~~lf~~t------ 168 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVLSFANHKSHFWLAS------ 168 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEECGGGTTSGGGGGG------
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEEEEecCcccccccc------
Confidence 488999999998 78999999999999999999999999999999999985 344432 11211000000
Q ss_pred HhhHHHHHHHHHHHhhh-cCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQ-NSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
..+ +... . .. . . ..+.++++.+ +...+ + +..||
T Consensus 169 --------------i~~~ni~~------~-~~----------------~--~---~~~~~~i~~~-L~~gl-d--g~~LS 202 (305)
T 2v9p_A 169 --------------LADTRAAL------V-DD----------------A--T---HACWRYFDTY-LRNAL-D--GYPVS 202 (305)
T ss_dssp --------------GTTCSCEE------E-EE----------------E--C---HHHHHHHHHT-TTGGG-G--TCCEE
T ss_pred --------------HHHHhhcc------C-cc----------------c--c---HHHHHHHHHH-hHccC-C--ccCcC
Confidence 000 0000 0 00 0 0 0233445553 33222 2 67999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCCh
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNF 402 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~ 402 (723)
|||||| ||||+.+|+||| |++||+.+...|.. +||++..+ .+||+| +|++|+++ +.|+.
T Consensus 203 gGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~ 261 (305)
T 2v9p_A 203 IDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITD 261 (305)
T ss_dssp CCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCH
T ss_pred HHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCH
Confidence 999999 999999999999 99999998877752 29999876 479999 99999996 56877
Q ss_pred hhH
Q 048654 403 DDF 405 (723)
Q Consensus 403 ~~~ 405 (723)
+++
T Consensus 262 ~el 264 (305)
T 2v9p_A 262 ADW 264 (305)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-21 Score=204.66 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=116.8
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------------eeEEEEccccccccCcc
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------------LRIGRYSQHFVDLLTME 576 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------------~~ig~~~q~~~~~~~~~ 576 (723)
.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|.... +...
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~-~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C-CCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc-cCHH
Confidence 4688899999999999999999999999999999999999987542 136777775320 1111
Q ss_pred ccHHHHHHh-hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCCCHH
Q 048654 577 ETPVSYLLR-LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHLDMQ 653 (723)
Q Consensus 577 ~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~LD~~ 653 (723)
.+....+.. .... . . ..+++.+|+.+.. .+++.+|| +||++|||+++.+|+ +|+|| ||+|||+.
T Consensus 170 ~~v~e~l~~~~~~~---~-d----~~lldt~gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~ 236 (302)
T 3b9q_A 170 TVLSKAVKRGKEEG---Y-D----VVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 236 (302)
T ss_dssp HHHHHHHHHHHHTT---C-S----EEEECCCCCSSCC-HHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred HHHHHHHHHHHHcC---C-c----chHHhcCCCCcch-hHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence 111111110 0000 0 0 1235667775433 35568899 999999999999999 99999 99999987
Q ss_pred HHHHHHHHHHHcCceEEEEec---------CHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 654 SIDALADALDEFTGGVVLVSH---------DSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 654 s~~~l~~~L~~~~~tVIivSH---------D~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
+. +..+-...+.|+|++|| .+..+..++ ..|.++..|+.
T Consensus 237 ~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~-----~pi~~i~~Ge~ 284 (302)
T 3b9q_A 237 PQ--AREFNEVVGITGLILTKLDGSARGGCVVSVVEELG-----IPVKFIGVGEA 284 (302)
T ss_dssp HH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHC-----CCEEEEECSSS
T ss_pred HH--HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHC-----CCEEEEeCCCC
Confidence 64 23333345779999999 566666666 48999999965
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=193.02 Aligned_cols=80 Identities=31% Similarity=0.520 Sum_probs=68.0
Q ss_pred cCCCCCCCHHHHH------HHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcC
Q 048654 614 LTPIAKLSGGQKA------RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 614 ~~~i~~LSGGqkq------Rv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d 684 (723)
.+++..||||||| ||++|++|+.+|++|||||||+|||+.++..+.++|.++. .+||+||||.++ ..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCC
Confidence 3567899999999 6778888889999999999999999999999999998863 489999999764 56784
Q ss_pred cCCCcEEEEEE--CCeE
Q 048654 685 DEERSEIWVVE--NGTV 699 (723)
Q Consensus 685 ~~~~drv~vl~--~G~i 699 (723)
+|++|+ +|..
T Consensus 322 -----~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 -----HVIRISLENGSS 333 (339)
T ss_dssp -----EEEEEEEETTEE
T ss_pred -----EEEEEEecCCcc
Confidence 888885 5543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-22 Score=222.28 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=118.2
Q ss_pred eeeeEeeeEEEeCCc--------------------EEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH
Q 048654 178 KELLKSTSVRISHGK--------------------RYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge--------------------~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~ 237 (723)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+..|..|.+. +.+......
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~--~~g~~~t~~--- 110 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK--TGVVEVTME--- 110 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC--CCC----CC---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE--ECCeeccee---
Confidence 568999999999999 9999999999999999999998776555432 211111000
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
.++.+.... ....+.+.. .++. ...++.++|+.+++... +..
T Consensus 111 -------------------~~v~q~~~~-------~~ltv~D~~--------g~~~--~~~~~~~~L~~~~L~~~--~~~ 152 (413)
T 1tq4_A 111 -------------------RHPYKHPNI-------PNVVFWDLP--------GIGS--TNFPPDTYLEKMKFYEY--DFF 152 (413)
T ss_dssp -------------------CEEEECSSC-------TTEEEEECC--------CGGG--SSCCHHHHHHHTTGGGC--SEE
T ss_pred -------------------EEecccccc-------CCeeehHhh--------cccc--hHHHHHHHHHHcCCCcc--CCe
Confidence 011110000 000000000 0000 12346778898988532 233
Q ss_pred CCCCChH--HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc------------CcEEEEE
Q 048654 318 TKSFSGG--WRMRISLARALFV----------QPTLLLLDEPTNHLDLRAVLWLEEYLCRW------------KKTLVVV 373 (723)
Q Consensus 318 ~~~LSGG--qrQRvaLArAL~~----------~P~lLLLDEPT~~LD~~~~~~L~~~L~~~------------~~TVIiv 373 (723)
+. |||| |+||++||+||+. +|++|||||||++||+.++..+.+.|+++ ..+|+++
T Consensus 153 ~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliS 231 (413)
T 1tq4_A 153 II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS 231 (413)
T ss_dssp EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECC
T ss_pred EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 34 9999 9999999999999 99999999999999998888777766543 1478899
Q ss_pred eCCHHH--HHhhCCEEE-EEeCCE
Q 048654 374 SHDRDF--LNTVCTEII-HLHDQK 394 (723)
Q Consensus 374 sHdl~~--l~~iad~Ii-~L~~G~ 394 (723)
||++.. +..+||+|. .|..|.
T Consensus 232 sh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 232 NKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCcCCccCHHHHHHHHHHhCccch
Confidence 999987 889999885 555443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-20 Score=211.36 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=109.9
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTS 264 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (723)
+..|.+|++++|+|+||||||||+++|+|...+. +.--+++..++. .. . +.....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~----~~---~----------l~~~~~------- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEES----RA---Q----------LLRNAY------- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSC----HH---H----------HHHHHH-------
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCC----HH---H----------HHHHHH-------
Confidence 4489999999999999999999999999876542 321233333221 10 0 000000
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048654 265 VDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344 (723)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLL 344 (723)
.++.. +.+ +..+|+. ...+.++.+|||||+||+++|+++..+|++|||
T Consensus 330 -------------------------~~g~~-----~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llil 377 (525)
T 1tf7_A 330 -------------------------SWGMD-----FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAI 377 (525)
T ss_dssp -------------------------TTSCC-----HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred -------------------------HcCCC-----HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 00000 011 2234543 334677889999999999999999999999999
Q ss_pred eCCCCCCCHH-----HHHHHHHHHh---hcCcEEEEEeCCH----------HHHHhhCCEEEEEeCCE
Q 048654 345 DEPTNHLDLR-----AVLWLEEYLC---RWKKTLVVVSHDR----------DFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 345 DEPT~~LD~~-----~~~~L~~~L~---~~~~TVIivsHdl----------~~l~~iad~Ii~L~~G~ 394 (723)
| ||++||+. .+..+.++++ +.+.|||+|+|+. .++..+||+|++|++|+
T Consensus 378 D-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 378 D-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp E-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred c-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9 99999998 7777666654 4578999999999 88889999999999886
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=189.44 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCCC-CCCHHHHHHHHHHHHHc---------cCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcC
Q 048654 615 TPIA-KLSGGQKARVVFTSISM---------SKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 615 ~~i~-~LSGGqkqRv~lAral~---------~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d 684 (723)
+++. .|||||||||+||++|+ .+|+||||||||++||+..+..|.+.|.++..|||++||+ +. +|
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~- 334 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA- 334 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC-
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC-
Confidence 4566 79999999999999999 8999999999999999999999999999988889999995 33 66
Q ss_pred cCCCcEEEEEECCeEEecCCCHHHH
Q 048654 685 DEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 685 ~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
+++++|++|+|+. .|+++++
T Consensus 335 ----~~i~~l~~G~i~~-~g~~~~~ 354 (359)
T 2o5v_A 335 ----ALTLRAQAGRFTP-VADEEMQ 354 (359)
T ss_dssp ----SEEEEEETTEEEE-CCCTTTS
T ss_pred ----CEEEEEECCEEEe-cCCHHHH
Confidence 5999999999974 5776653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-22 Score=212.10 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=119.0
Q ss_pred eEEEEEEEEEcCCCcccceeceEEE-----------------------EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVG-----------------------IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~-----------------------i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~ 551 (723)
.|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|+++|+.
T Consensus 43 ~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 43 QIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred eEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 588899999994 366676664 78999999999999999999999999999987
Q ss_pred ceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCC---cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 552 GEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL---SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 552 G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
|. ..+++++|+... ...+..... .... ..+. ...+.+.++|..++ .+.. ..++..|||||+|||
T Consensus 119 G~------~~v~~v~qd~~~---~~~t~~e~~-~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~-~~~~~~lS~G~~qRv 185 (312)
T 3aez_A 119 HH------PRVDLVTTDGFL---YPNAELQRR-NLMH-RKGFPESYNRRALMRFVTSVK-SGSD-YACAPVYSHLHYDII 185 (312)
T ss_dssp TC------CCEEEEEGGGGB---CCHHHHHHT-TCTT-CTTSGGGBCHHHHHHHHHHHH-TTCS-CEEEEEEETTTTEEE
T ss_pred CC------CeEEEEecCccC---CcccHHHHH-HHHH-hcCCChHHHHHHHHHHHHHhC-CCcc-cCCcccCChhhhhhh
Confidence 64 458899986431 111222221 1111 0111 12356777888887 4333 245679999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLIS 680 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~ 680 (723)
++|++++.+|+|||||||+..+|+.. ..+.++-..+|+|+|+.+.+.
T Consensus 186 ~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~ 232 (312)
T 3aez_A 186 PGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIE 232 (312)
T ss_dssp EEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHH
T ss_pred hhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHH
Confidence 99999999999999999999998522 123344346789999987754
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-20 Score=201.32 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=99.7
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
+++++||.|.+|++++|+||||||||||+++|+|+++|++|.|.+++...+ .... ....
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~-----------~~~~---------~~~~- 218 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI-----------VFKH---------HKNY- 218 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC-----------CCSS---------CSSE-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc-----------cccc---------chhE-
Confidence 789999999999999999999999999999999999999999988764210 0000 0000
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--C-ce
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF--T-GG 668 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~-~t 668 (723)
+++- .. |||+||++||+||..+|++|||||||+. + +.++|+.+ + .|
T Consensus 219 --------------i~~~--------~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~~~l~~~~~g~~t 267 (330)
T 2pt7_A 219 --------------TQLF--------FG--GNITSADCLKSCLRMRPDRIILGELRSS---E----AYDFYNVLCSGHKG 267 (330)
T ss_dssp --------------EEEE--------CB--TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HHHHHHHHHTTCCC
T ss_pred --------------EEEE--------eC--CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HHHHHHHHhcCCCE
Confidence 0000 00 8999999999999999999999999982 2 33444443 3 37
Q ss_pred EEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 669 VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 669 VIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
+|+++|+.+ +...| ||+++|.+|..
T Consensus 268 vi~t~H~~~-~~~~~-----dri~~l~~g~~ 292 (330)
T 2pt7_A 268 TLTTLHAGS-SEEAF-----IRLANMSSSNS 292 (330)
T ss_dssp EEEEEECSS-HHHHH-----HHHHHHHHTSG
T ss_pred EEEEEcccH-HHHHh-----hhheehhcCCc
Confidence 999999999 66778 48999988864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-20 Score=201.41 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=116.6
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------------eeEEEEccccccccCcc
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------------LRIGRYSQHFVDLLTME 576 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------------~~ig~~~q~~~~~~~~~ 576 (723)
..+||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+++++|.... +...
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-CCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-cChh
Confidence 3578889999999999999999999999999999999999987542 136777775320 1111
Q ss_pred ccHHHHHHh-hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCCCHH
Q 048654 577 ETPVSYLLR-LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHLDMQ 653 (723)
Q Consensus 577 ~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~LD~~ 653 (723)
.+....+.. .... . . ..+++.+|+.+.. .+.+.+|| +||++|||+++.+|+ +|||| ||+|||+.
T Consensus 227 ~tv~e~l~~~~~~~---~-d----~~lldt~Gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~ 293 (359)
T 2og2_A 227 TVLSKAVKRGKEEG---Y-D----VVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 293 (359)
T ss_dssp HHHHHHHHHHHHTT---C-S----EEEEECCCCSSCC-HHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred hhHHHHHHHHHhCC---C-H----HHHHHhcCCChhh-hhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence 111111110 0000 0 0 1235567775433 35567899 999999999999999 99999 99999987
Q ss_pred HHHHHHHHHHHcCceEEEEec---------CHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 654 SIDALADALDEFTGGVVLVSH---------DSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 654 s~~~l~~~L~~~~~tVIivSH---------D~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
+.. ..+-...+.|+|++|| .+..+..++ ..|+++..|+.
T Consensus 294 ~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~-----~pI~~ig~Ge~ 341 (359)
T 2og2_A 294 PQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELG-----IPVKFIGVGEA 341 (359)
T ss_dssp HHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHC-----CCEEEEECSSS
T ss_pred HHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhC-----CCEEEEeCCCC
Confidence 653 2333345779999999 466676666 48999999965
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-22 Score=200.37 Aligned_cols=161 Identities=13% Similarity=0.104 Sum_probs=99.2
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEEEccccccc--cC-ccc
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGRYSQHFVDL--LT-MEE 577 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~~~q~~~~~--~~-~~~ 577 (723)
-|+||||+|.+|++++|+||||||||||+++|+|++ | |.|.+... ..++|++|..... +. ..+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNED 88 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTC
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccc
Confidence 589999999999999999999999999999999999 6 98887211 1345555542100 00 000
Q ss_pred cHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHH-----HHHHccCCCeEEeccCCCCCCH
Q 048654 578 TPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVF-----TSISMSKPHILLLDEPTNHLDM 652 (723)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~l-----Aral~~~p~lLlLDEPT~~LD~ 652 (723)
. +.+ ..+.....+. ....+.++++...+. .. . ..|||||+||++| +++++.+|++++|||||+++|.
T Consensus 89 ~-l~~-~~~~~~~~g~-~~~~i~~~l~~~~~~-il---~-~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 89 F-LEY-DNYANNFYGT-LKSEYDKAKEQNKIC-LF---E-MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp E-EEE-EEETTEEEEE-EHHHHHHHHHTTCEE-EE---E-ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred h-hhh-hhcccccCCC-cHHHHHHHHhCCCcE-EE---E-ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 0 000 0000001111 123466677654431 11 1 4789999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHHc----------CceEEEEecCHHHHHHhc
Q 048654 653 QSIDALADALDEF----------TGGVVLVSHDSRLISRVC 683 (723)
Q Consensus 653 ~s~~~l~~~L~~~----------~~tVIivSHD~~~~~~~~ 683 (723)
.+...+.+.|... ....|+|+||++.+...+
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~ 201 (218)
T 1z6g_A 161 ENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQL 201 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHH
Confidence 8877777776543 235677777777766655
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-22 Score=199.77 Aligned_cols=180 Identities=12% Similarity=0.038 Sum_probs=94.7
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHH
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA 257 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (723)
.++++| .+|++|++++|+||||||||||+++|+|+.... .+.+..............+. ++.+.+. +...+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i--~~~~~~~~~~~~~~~~~~i~-~~~q~~~---~~~~~~ 80 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNL--HFSVSATTRAPRPGEVDGVD-YHFIDPT---RFQQLI 80 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTC--EECCCEESSCCCTTCCBTTT-BEECCHH---HHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCce--EEcccccccCCcccccCCCe-eEecCHH---HHHHHH
Confidence 457777 799999999999999999999999999986311 11110000000000000000 0001111 111111
Q ss_pred hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHH------HHhCCCCccccCCCCCCCChHHHHHHHH
Q 048654 258 SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKI------LAGLGFTKEMQGRPTKSFSGGWRMRISL 331 (723)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------L~~lgl~~~~~~~~~~~LSGGqrQRvaL 331 (723)
..++.... .....++ .+.........+++.+. ++.+|+. ...++++..||
T Consensus 81 ~~~~l~~~---------~~~~~n~-----~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS--------- 136 (207)
T 1znw_A 81 DQGELLEW---------AEIHGGL-----HRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT--------- 136 (207)
T ss_dssp HTTCEEEE---------EEEGGGT-----EEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE---------
T ss_pred hcCCceee---------hhhcCch-----hhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE---------
Confidence 11110000 0000000 00001111223334443 4444553 23356677787
Q ss_pred HHHHccCCCEEEEeCCCCCC----CHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 332 ARALFVQPTLLLLDEPTNHL----DLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 332 ArAL~~~P~lLLLDEPT~~L----D~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
+|+.+|++++|||||++| |+..+..|.++++++ +.|||+||||++++..+||+|++|.
T Consensus 137 --~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 --VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp --EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred --EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999999999998 777888888777654 5799999999999999999999985
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-22 Score=200.06 Aligned_cols=165 Identities=15% Similarity=0.062 Sum_probs=94.8
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC-------ceeEEEEcccccc--ccCccccHHH
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ-------KLRIGRYSQHFVD--LLTMEETPVS 581 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~-------~~~ig~~~q~~~~--~~~~~~~~~~ 581 (723)
+++.| .+|.+|++++|+||||||||||+++|+|+++...+.+.... ...++|++|.... .+++.++...
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~ 87 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLE 87 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCcee
Confidence 46777 68999999999999999999999999999863322221110 1236677775311 1111111000
Q ss_pred HHHhhCC--CCCCCcH---HHHHHHH------HHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCC
Q 048654 582 YLLRLHP--DQEGLSK---QEAVRAK------LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHL 650 (723)
Q Consensus 582 ~~~~~~~--~~~~~~~---~~~~~~~------L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~L 650 (723)
+ ...+. ...+... .+.+.+. ++.+|+.... .+.+..|| +|+.+|++++|||||++|
T Consensus 88 ~-~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~lS-----------~l~~~p~~~~LDep~~~l 154 (207)
T 1znw_A 88 W-AEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIK-KTMPEAVT-----------VFLAPPSWQDLQARLIGR 154 (207)
T ss_dssp E-EEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHH-HHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred e-hhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHH-HhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence 0 00000 0011111 1122222 2333332211 22345566 889999999999999998
Q ss_pred ----CHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEE
Q 048654 651 ----DMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVE 695 (723)
Q Consensus 651 ----D~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~ 695 (723)
|+..+..+.+++.++ +.|||+||||++++..+|| +|++|.
T Consensus 155 ~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d-----~i~~l~ 202 (207)
T 1znw_A 155 GTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELV-----SLLVGT 202 (207)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHH-----HHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHH-----HHHHhc
Confidence 778888888888776 3589999999999999995 888874
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-19 Score=217.09 Aligned_cols=165 Identities=19% Similarity=0.251 Sum_probs=113.3
Q ss_pred CCeEEEEE-----EEEEcCCCcccceeceEEEEec-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce
Q 048654 493 PPLLQLIE-----VSFSYPNREDFKLSDVDVGIDM-------GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL 560 (723)
Q Consensus 493 ~~~l~~~~-----ls~~y~~~~~~~L~~isl~i~~-------Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~ 560 (723)
.++|+++| |++.|++. .++++||+|++.+ |++++|+||||||||||||+| |++.+. .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------H
T ss_pred CceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------h
Confidence 46899999 99999432 4689999999987 999999999999999999999 988752 1
Q ss_pred eEE-EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 561 RIG-RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 561 ~ig-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
++| |++|... .+++.+++ +.++|+..... ...+++|+++++ +++|++++.+|.
T Consensus 817 qiG~~Vpq~~~-~l~v~d~I-----------------------~~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 817 QMGCYVPAEVC-RLTPIDRV-----------------------FTRLGASDRIM-SGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp TTTCCEESSEE-EECCCSBE-----------------------EEECC----------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred heeEEeccCcC-CCCHHHHH-----------------------HHHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCc
Confidence 344 7777542 22222221 11233322221 234678888775 999999999999
Q ss_pred eEEeccCCCCCCHHHH-HHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 640 ILLLDEPTNHLDMQSI-DALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~-~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
||||||||+|+|+... ..+..+|..+ +.+||++|||.+++..+|| +++++ +|++.
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d-----~~~v~-~g~~~ 930 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQ-----NVAVR-LGHMA 930 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSS-----CSSEE-EEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCC-----cceee-cCeEE
Confidence 9999999999998874 3344555443 5689999999999998885 56665 46665
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=184.62 Aligned_cols=181 Identities=16% Similarity=0.107 Sum_probs=111.4
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHH-
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEV- 256 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~- 256 (723)
.++|+++++.|++|++++|+||||||||||+++|+|...+..| ..+.+++.+.. ... +...+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~~---~~~-------------~~~r~~ 84 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEES---VEE-------------TAEDLI 84 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSSC---HHH-------------HHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcCC---HHH-------------HHHHHH
Confidence 4579999999999999999999999999999999987654322 14555554321 110 01111
Q ss_pred HhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH-HHHHHHHHHH
Q 048654 257 ASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW-RMRISLARAL 335 (723)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq-rQRvaLArAL 335 (723)
...++... .....+.. .. +........+..+|+..++. . ...+..+|.++ +||+. |+++
T Consensus 85 ~~~~~~~~-----------~~~~~l~~--~~---~~~~~~~~~~~~~l~~~~l~--i-~~~~~~~~~~~l~~~~~-a~~~ 144 (296)
T 1cr0_A 85 GLHNRVRL-----------RQSDSLKR--EI---IENGKFDQWFDELFGNDTFH--L-YDSFAEAETDRLLAKLA-YMRS 144 (296)
T ss_dssp HHHTTCCG-----------GGCHHHHH--HH---HHHTHHHHHHHHHHSSSCEE--E-ECCCCSCCHHHHHHHHH-HHHH
T ss_pred HHHcCCCh-----------hhcccccc--CC---CCHHHHHHHHHHHhccCCEE--E-ECCCCCCCHHHHHHHHH-HHHH
Confidence 11111100 00000100 00 11122233445555444442 2 23346789999 66666 9999
Q ss_pred ccCCCEEEEeCCCC---C---CCH-HHHHHHHHHHh----hcCcEEEEEeCCH--H--------------------HHHh
Q 048654 336 FVQPTLLLLDEPTN---H---LDL-RAVLWLEEYLC----RWKKTLVVVSHDR--D--------------------FLNT 382 (723)
Q Consensus 336 ~~~P~lLLLDEPT~---~---LD~-~~~~~L~~~L~----~~~~TVIivsHdl--~--------------------~l~~ 382 (723)
..+|++|||||||+ + +|. ..+..+.+.|+ +.+.|||++||+. + .+..
T Consensus 145 ~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~ 224 (296)
T 1cr0_A 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQ 224 (296)
T ss_dssp TTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHH
T ss_pred hcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHh
Confidence 99999999999999 4 455 55566666664 3478999999995 5 7888
Q ss_pred hCCEEEEEeCCEE
Q 048654 383 VCTEIIHLHDQKL 395 (723)
Q Consensus 383 iad~Ii~L~~G~i 395 (723)
+||+|++|++|+.
T Consensus 225 ~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 225 LSDTIIALERNQQ 237 (296)
T ss_dssp HCSEEEEEEEC--
T ss_pred hCcEEEEEecCcc
Confidence 9999999998864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-20 Score=208.65 Aligned_cols=173 Identities=13% Similarity=0.141 Sum_probs=125.8
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+++++++++++.|+.. ..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.+.
T Consensus 129 ~~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CCTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CCceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 3568899999999732 3589999 999999999999999999999999999999999999987664
Q ss_pred ------eeEEEEcccccc---ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHH
Q 048654 560 ------LRIGRYSQHFVD---LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 ------~~ig~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~l 630 (723)
..+++++|.... .+++.++.. ...+++...+-.-......+..||+|| |||+|
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~-----------------~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYAT-----------------RIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHH-----------------HHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHH-----------------HHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHH
Confidence 136777774111 011111100 001111111100000011256899999 99999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC------c------eEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT------G------GVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~------~------tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
| +.+|++ |+|||+.....+.++|.++. + ||+++|||++ ..+| |++++|.+|+
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~ia-----d~v~~l~dG~ 332 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIA-----DSARAILDGH 332 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHH-----HHHHHHSSEE
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhh-----ceEEEEeCcE
Confidence 9 888888 99999999999999998762 3 7999999998 5677 4899999999
Q ss_pred EEe
Q 048654 699 VSR 701 (723)
Q Consensus 699 i~~ 701 (723)
|+.
T Consensus 333 Ivl 335 (438)
T 2dpy_A 333 IVL 335 (438)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=164.06 Aligned_cols=80 Identities=33% Similarity=0.451 Sum_probs=71.7
Q ss_pred CCCCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCC
Q 048654 315 GRPTKSFSGGWRMRISLA------RALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLA------rAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad 385 (723)
++++.+|||||||||+|| |||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 578899999999999876 8999999999999999999999999999999875 479999999994 667999
Q ss_pred EEEEE--eCCEE
Q 048654 386 EIIHL--HDQKL 395 (723)
Q Consensus 386 ~Ii~L--~~G~i 395 (723)
+|++| ++|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 46644
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-20 Score=182.46 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=109.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC---------ceeEEEEccccccccCccccHHHHHHhhCCCCCCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ---------KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL 593 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~---------~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (723)
|++++|+||||||||||+++|+|+++ ++| |.+.+ ..++||++|.+.... .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~~---~~--------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGTR---GP--------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSCE---EE---------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccce---eh---------------
Confidence 78999999999999999999999998 888 75533 224666666541110 00
Q ss_pred cHHHHHHHHHHhCCCCCC------CCcCCCCCCCHHHHHHH-HHHH---HHccCCCeEEecc--CCCCCCHHHHHHHHHH
Q 048654 594 SKQEAVRAKLGKFGLPSH------NHLTPIAKLSGGQKARV-VFTS---ISMSKPHILLLDE--PTNHLDMQSIDALADA 661 (723)
Q Consensus 594 ~~~~~~~~~L~~~gl~~~------~~~~~i~~LSGGqkqRv-~lAr---al~~~p~lLlLDE--PT~~LD~~s~~~l~~~ 661 (723)
|..+++... ...++...+|+|||+++ +|++ |++.+|+|||||| ||+++|....+.|.++
T Consensus 61 ---------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 61 ---------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ---------EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ---------hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 111111110 11233457999999988 4444 5789999999999 9999999999999999
Q ss_pred HHHcCceEE---EEecCH--HHHHHhcCcCCCcEEEEEECCeEEecC-CCHHHHHHHHHHHHHhh
Q 048654 662 LDEFTGGVV---LVSHDS--RLISRVCDDEERSEIWVVENGTVSRFP-GTFEEYKEDLQREIKAE 720 (723)
Q Consensus 662 L~~~~~tVI---ivSHD~--~~~~~~~d~~~~drv~vl~~G~i~~~~-g~~~~~~~~~~~~~~~~ 720 (723)
|..+...|| .||||. .|+.++|+ +.+|+|.... .+.+.+.+++++.+...
T Consensus 132 l~~~~~~ilgti~vsh~~~~~~vd~i~~---------~~~~~i~~~~~~nr~~~~~~i~~~~~~~ 187 (189)
T 2i3b_A 132 LSTPGTIILGTIPVPKGKPLALVEEIRN---------RKDVKVFNVTKENRNHLLPDIVTCVQSS 187 (189)
T ss_dssp HHCSSCCEEEECCCCCSSCCTTHHHHHT---------TCCSEEEECCSSSGGGHHHHHHHHHTTS
T ss_pred HhCCCcEEEEEeecCCCCchHHHHHHee---------cCCcEEEEeChHhHHHHHHHHHHHHHHh
Confidence 987654443 456987 78887775 3566665432 35566666666666543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-19 Score=215.92 Aligned_cols=165 Identities=14% Similarity=0.052 Sum_probs=108.7
Q ss_pred ccceEEEe-----EEEEe-CCeeeeEeeeEEEeC-------CcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeee
Q 048654 163 VKDITIDN-----FSVAA-RGKELLKSTSVRISH-------GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ 229 (723)
Q Consensus 163 ~~~I~l~n-----ls~~y-~~~~vL~~isl~i~~-------Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q 229 (723)
..+|+++| |++.| ++..+++|++|++.+ |++++|+||||||||||||+| |+..+...-| .++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG--~~Vpq 824 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMG--CYVPA 824 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTT--CCEES
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhhee--EEecc
Confidence 34699999 99999 778899999999987 999999999999999999999 7632100000 00111
Q ss_pred eecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q 048654 230 EVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGF 309 (723)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl 309 (723)
+.. .... .+. ++..+|+
T Consensus 825 ~~~----------------------------~l~v-------~d~----------------------------I~~rig~ 841 (1022)
T 2o8b_B 825 EVC----------------------------RLTP-------IDR----------------------------VFTRLGA 841 (1022)
T ss_dssp SEE----------------------------EECC-------CSB----------------------------EEEECC-
T ss_pred CcC----------------------------CCCH-------HHH----------------------------HHHHcCC
Confidence 000 0000 000 0112343
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-HHH---HHHHhhc-CcEEEEEeCCHHHHHhhC
Q 048654 310 TKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAV-LWL---EEYLCRW-KKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 310 ~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~-~~L---~~~L~~~-~~TVIivsHdl~~l~~ia 384 (723)
.+.. .+..+++|+++++ +++|++++.+|.||||||||+|+|+... ..+ .+.|.+. +.++|++||+++++..+|
T Consensus 842 ~d~~-~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 842 SDRI-MSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp ---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS
T ss_pred HHHH-hhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC
Confidence 3222 2445678888775 9999999999999999999999998763 333 3444433 789999999999999999
Q ss_pred CEEEEEeCCEEE
Q 048654 385 TEIIHLHDQKLH 396 (723)
Q Consensus 385 d~Ii~L~~G~i~ 396 (723)
|++++++ |++.
T Consensus 920 d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 920 QNVAVRL-GHMA 930 (1022)
T ss_dssp SCSSEEE-EEEE
T ss_pred Ccceeec-CeEE
Confidence 9998874 7775
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=186.50 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=67.0
Q ss_pred CCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEE
Q 048654 316 RPTKSFSGGWRMRISLARALF----VQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~----~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii 388 (723)
+++..||||||||++||++|+ .+|+||||||||++||+..+..|.++|.++ +.++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 589999999999999999999999999876 35999999997765 5699999
Q ss_pred EEe
Q 048654 389 HLH 391 (723)
Q Consensus 389 ~L~ 391 (723)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-20 Score=201.64 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=123.2
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccc
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~ 572 (723)
+++++++++++.|+.. ..+|+++ |+|.+|++++|+||||||||||+++|+|+..|+.|.|...+...- -+.+ +...
T Consensus 43 ~~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~-ev~~-~i~~ 118 (347)
T 2obl_A 43 PDPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGR-EVNE-FLAL 118 (347)
T ss_dssp SCSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHH-HHHH-HHTT
T ss_pred CCCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHH-HHHH-HHHh
Confidence 3578899999999732 4589999 999999999999999999999999999999999998876553100 0000 0000
Q ss_pred cCccccHHHHHHhhCCCCCCCcHHHHHH---------HHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 573 LTMEETPVSYLLRLHPDQEGLSKQEAVR---------AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
.....+........ ........++. +++...+-.-......+..||+|| |||++| +.+|++
T Consensus 119 --~~~~~~~~~v~~~~-~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 119 --LPQSTLSKCVLVVT-TSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp --SCHHHHTTEEEEEE-CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred --hhhhhhhceEEEEE-CCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 00000000000000 00000111111 111111110000013467899999 899999 578877
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC----c------eEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 644 DEPTNHLDMQSIDALADALDEFT----G------GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~~----~------tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
|+|||+.....+.+++.+.+ + ||+++|||++ ..+| |++++|.+|+|+. +++.
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~-----d~v~~i~dG~Ivl-~~~l 250 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIG-----DEVRSILDGHIVL-TREL 250 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHH-----HHHHHHCSEEEEB-CHHH
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhh-----hheEEeeCcEEEE-eCCH
Confidence 99999999999999998763 2 7999999998 5678 4899999999973 4443
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-19 Score=191.99 Aligned_cols=183 Identities=15% Similarity=0.102 Sum_probs=117.6
Q ss_pred eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHH--HHHH
Q 048654 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR--EEVA 257 (723)
Q Consensus 180 vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 257 (723)
.+..+||++.+|++++|+||||||||||+++|+|++.+. .++|.+.+.++.. .... .+...+. ..+.
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r--~~a~-------~ql~~~~~~~~i~ 157 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFR--AAAS-------DQLEIWAERTGCE 157 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSC--HHHH-------HHHHHHHHHHTCE
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccc--hhHH-------HHHHHHHHhcCce
Confidence 345789999999999999999999999999999986543 4566666654321 1110 1111111 1122
Q ss_pred hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 048654 258 SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337 (723)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~ 337 (723)
++.+... .......+.+.+... .. .+. ...+++.+|+.+ ..++++.+|| +||++|||||+.
T Consensus 158 ~v~q~~~-----~~~~~~~v~e~l~~~--~~--~~~------d~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~ 218 (302)
T 3b9q_A 158 IVVAEGD-----KAKAATVLSKAVKRG--KE--EGY------DVVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSG 218 (302)
T ss_dssp EECCC-------CCCHHHHHHHHHHHH--HH--TTC------SEEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTT
T ss_pred EEEecCC-----ccCHHHHHHHHHHHH--HH--cCC------cchHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhcc
Confidence 2211100 001111111211110 00 000 012456677753 3356778899 999999999999
Q ss_pred CCC--EEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeC---------CHHHHHhhCCEEEEEeCCEE
Q 048654 338 QPT--LLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSH---------DRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 338 ~P~--lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsH---------dl~~l~~iad~Ii~L~~G~i 395 (723)
+|+ +|+|| ||++||+..+. ..+-+..+.|+|++|| .++.+..++..|.++..|+.
T Consensus 219 ~P~e~lLvLD-ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 219 APNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp CCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCeeEEEEe-CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999 99999 99999998653 3333356889999999 67788888899999999964
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-20 Score=201.54 Aligned_cols=192 Identities=15% Similarity=0.196 Sum_probs=123.2
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..++++++++.|+ +..+|+++ |+|.+|+++||+||||||||||+++|+|+.. ++.+.+.+.++. ......+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~-----~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGER-----GREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCC-----HHHHHHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEeccc-----HHHHHHH
Confidence 3688999999998 78899999 9999999999999999999999999999864 455666655432 1111111
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
+.... . ..+.+...... .. ......++...+..+ .+.+++...|..-...-..+..||
T Consensus 116 i~~~~------~--~~~~~~v~~~~-~~---~~~~~~r~~~~~~~~----------~~ae~~~~~~~~vl~~ld~~~~lS 173 (347)
T 2obl_A 116 LALLP------Q--STLSKCVLVVT-TS---DRPALERMKAAFTAT----------TIAEYFRDQGKNVLLMMDSVTRYA 173 (347)
T ss_dssp HTTSC------H--HHHTTEEEEEE-CT---TSCHHHHHHHHHHHH----------HHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHhhh------h--hhhhceEEEEE-CC---CCCHHHHHHHHHHHH----------HHHHHHHhccccHHHHHhhHHHHH
Confidence 11000 0 00111000000 00 000111111111000 011111111211000014577899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----Cc-----EEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW-----KK-----TLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~-----~~-----TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+|| |||+|| +.+|++ |+|||+.....+.+++.+. +. ||+++|||++ ..+||++++|.+
T Consensus 174 ~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~d 241 (347)
T 2obl_A 174 RAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILD 241 (347)
T ss_dssp HHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCS
T ss_pred HHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeC
Confidence 999 899999 688888 9999999999999999865 33 8999999999 678999999999
Q ss_pred CEEEE
Q 048654 393 QKLHF 397 (723)
Q Consensus 393 G~i~~ 397 (723)
|+|+.
T Consensus 242 G~Ivl 246 (347)
T 2obl_A 242 GHIVL 246 (347)
T ss_dssp EEEEB
T ss_pred cEEEE
Confidence 99964
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-20 Score=199.04 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=95.4
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHh
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS 258 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 258 (723)
++++++||.|++|++++|+||||||||||+++|+|++.|. .+.|.+.+......
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~------------------------ 212 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVF------------------------ 212 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCC------------------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeecccc------------------------
Confidence 4899999999999999999999999999999999987654 45555433210000
Q ss_pred hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 048654 259 LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338 (723)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~ 338 (723)
... .. .+++ ..+ |||+||++||+||..+
T Consensus 213 -~~~----------~~-------------------------------~i~~---~~g-------gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 213 -KHH----------KN-------------------------------YTQL---FFG-------GNITSADCLKSCLRMR 240 (330)
T ss_dssp -SSC----------SS-------------------------------EEEE---ECB-------TTBCHHHHHHHHTTSC
T ss_pred -ccc----------hh-------------------------------EEEE---EeC-------CChhHHHHHHHHhhhC
Confidence 000 00 0000 000 8999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 339 P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
|++|||||||+. .... ++..+..-+.|+|+++|+.+ +...||||++|.+|.
T Consensus 241 p~ilildE~~~~---e~~~-~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 241 PDRIILGELRSS---EAYD-FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp CSEEEECCCCST---HHHH-HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred CCEEEEcCCChH---HHHH-HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 999999999982 2222 22333322348999999999 667899999998875
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-21 Score=208.73 Aligned_cols=180 Identities=12% Similarity=0.046 Sum_probs=118.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEE-----------------------EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCc
Q 048654 165 DITIDNFSVAARGKELLKSTSVR-----------------------ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~-----------------------i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~ 221 (723)
.|+++||++.|+ +++++++|. +.+|+++||+||||||||||+++|+|+..+..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 588999999994 677777765 8999999999999999999999999987665554
Q ss_pred EEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHH
Q 048654 222 IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQAS 301 (723)
Q Consensus 222 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 301 (723)
..+.++.|+......+..+ .+..+.. . + ........++.
T Consensus 121 ~~v~~v~qd~~~~~~t~~e--------------~~~~~~~---~-----g-------------------~~~~~d~~~~~ 159 (312)
T 3aez_A 121 PRVDLVTTDGFLYPNAELQ--------------RRNLMHR---K-----G-------------------FPESYNRRALM 159 (312)
T ss_dssp CCEEEEEGGGGBCCHHHHH--------------HTTCTTC---T-----T-------------------SGGGBCHHHHH
T ss_pred CeEEEEecCccCCcccHHH--------------HHHHHHh---c-----C-------------------CChHHHHHHHH
Confidence 3455665543322222111 1110000 0 0 00001123455
Q ss_pred HHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHH
Q 048654 302 KILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLN 381 (723)
Q Consensus 302 ~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~ 381 (723)
++|+.++ .. ..+.++..|||||+||+++|+|++.+|+|||||||+..+|+.. ..+..+-..+|+|+|+.+...
T Consensus 160 ~~L~~l~-~~-~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~ 232 (312)
T 3aez_A 160 RFVTSVK-SG-SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIE 232 (312)
T ss_dssp HHHHHHH-TT-CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHH
T ss_pred HHHHHhC-CC-cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHH
Confidence 6677776 22 2245678999999999999999999999999999999998621 123333335677888876643
Q ss_pred -hhCCEEEEEeCCE
Q 048654 382 -TVCTEIIHLHDQK 394 (723)
Q Consensus 382 -~iad~Ii~L~~G~ 394 (723)
..++|.+.+.++.
T Consensus 233 ~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 233 QWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHhcc
Confidence 3455555555543
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-21 Score=195.03 Aligned_cols=149 Identities=12% Similarity=0.095 Sum_probs=81.9
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC-----hHHHHHHHHhhHHHHHHH
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD-----RSAIQAVVSAHEELVKLR 253 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~-----~~~~~~~~~~~~~~~~l~ 253 (723)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |. |.+ +..+.... .... .++...+. +.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~--i~~-g~~~~~~~~~~~~~~~i-~~~~~~~~---~~ 80 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NY--FYF-SVSCTTRKKREKEKEGV-DYYFIDKT---IF 80 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TT--EEE-CCCEECSCCCSSCCBTT-TBEECCHH---HH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--Cc--EEE-eecccCCCCCcccccCC-eEEECCHH---HH
Confidence 4699999999999999999999999999999999976 3 44 333 33221110 0000 00000111 11
Q ss_pred HHHH----hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHH
Q 048654 254 EEVA----SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRI 329 (723)
Q Consensus 254 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRv 329 (723)
.... .++..... . . ..+.. ...+.++++...+. ..+ ..|||||+||+
T Consensus 81 ~~~~~~~~~l~~~~~~-------------~-------~--~~g~~--~~~i~~~l~~~~~~--il~---~~lsggq~qR~ 131 (218)
T 1z6g_A 81 EDKLKNEDFLEYDNYA-------------N-------N--FYGTL--KSEYDKAKEQNKIC--LFE---MNINGVKQLKK 131 (218)
T ss_dssp HHHHHTTCEEEEEEET-------------T-------E--EEEEE--HHHHHHHHHTTCEE--EEE---ECHHHHHHHTT
T ss_pred HHhhhccchhhhhhcc-------------c-------c--cCCCc--HHHHHHHHhCCCcE--EEE---ecHHHHHHHHH
Confidence 1111 00000000 0 0 00111 12355566654431 222 57999999999
Q ss_pred HH-----HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 048654 330 SL-----ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW 366 (723)
Q Consensus 330 aL-----ArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~ 366 (723)
+| |++|+..|++++|||||+++|..+...+.+.|.+.
T Consensus 132 ~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~ 173 (218)
T 1z6g_A 132 STHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQL 173 (218)
T ss_dssp CSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99 89999999999999999999998877777776543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-18 Score=202.75 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=105.9
Q ss_pred ceEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHH--------hCCCCCCCcEE-EEEeeee
Q 048654 165 DITIDNFSVAA-----RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA--------WRKIPVPKNID-VLLVEQE 230 (723)
Q Consensus 165 ~I~l~nls~~y-----~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~--------G~~~~~~~~~~-i~~~~q~ 230 (723)
.|.+++...-+ ++..+++|++|++.+|++++|+||||||||||||+|+ |...| .... +..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~~~~~---- 704 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESAEVSI---- 704 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEEEEEC----
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccccchH----
Confidence 46666654432 3457899999999999999999999999999999994 32211 1100 000
Q ss_pred ecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 048654 231 VVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT 310 (723)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~ 310 (723)
+..++..+|+.
T Consensus 705 ---------------------------------------------------------------------~d~i~~~ig~~ 715 (934)
T 3thx_A 705 ---------------------------------------------------------------------VDCILARVGAG 715 (934)
T ss_dssp ---------------------------------------------------------------------CSEEEEECC--
T ss_pred ---------------------------------------------------------------------HHHHHHhcCch
Confidence 00112233433
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCcEEEEEeCCHHHHHhh
Q 048654 311 KEMQGRPTKSFSGGWRMRISLARAL--FVQPTLLLLDEPTNHLDLRAVLWL----EEYLCR-WKKTLVVVSHDRDFLNTV 383 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQRvaLArAL--~~~P~lLLLDEPT~~LD~~~~~~L----~~~L~~-~~~TVIivsHdl~~l~~i 383 (723)
+.....+|+|+.+++.+|++| +.+|+||||||||+|||+.....+ .+.|.+ .+.|||++||+.++. .+
T Consensus 716 ----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~l 790 (934)
T 3thx_A 716 ----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-AL 790 (934)
T ss_dssp -----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GG
T ss_pred ----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HH
Confidence 223456888888888888888 999999999999999999766544 444443 478999999997655 68
Q ss_pred CCEEEEEeCCEEEE
Q 048654 384 CTEIIHLHDQKLHF 397 (723)
Q Consensus 384 ad~Ii~L~~G~i~~ 397 (723)
||++..|.+|++..
T Consensus 791 ad~~~~v~ng~v~~ 804 (934)
T 3thx_A 791 ANQIPTVNNLHVTA 804 (934)
T ss_dssp GGTCTTEEEEEEEE
T ss_pred hcccceeEeeEEEE
Confidence 99999999998864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-19 Score=189.22 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=85.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------eeEEEEcccc--ccccCccccHHHHHHhhCCCCCCCc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLS 594 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (723)
.++|+||||||||||+|+|+|+..|++|+|.+.+. ..+++++|.. ...+++.+++... .... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g-~~~~----~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG-DQIN----NEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSB----CTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh-hhcc----cHH
Confidence 48999999999999999999999999999987553 3588998863 2234444443211 0000 111
Q ss_pred HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEec
Q 048654 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSH 674 (723)
Q Consensus 595 ~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSH 674 (723)
..+.+..++. . ......+.+|||||+|||++|||++. +++|||||.+||+.... +++.|.+. .+||+|.|
T Consensus 79 ~~~~i~~~~~----~-~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~~~-~~vI~Vi~ 148 (270)
T 3sop_A 79 CWEPIEKYIN----E-QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLSKV-VNIIPVIA 148 (270)
T ss_dssp CSHHHHHHHH----H-HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHHTT-SEEEEEET
T ss_pred HHHHHHHHHH----H-HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHHhc-CcEEEEEe
Confidence 1122333332 1 11123457899999999999999886 99999999999998854 44455555 78888888
Q ss_pred CHH
Q 048654 675 DSR 677 (723)
Q Consensus 675 D~~ 677 (723)
..+
T Consensus 149 K~D 151 (270)
T 3sop_A 149 KAD 151 (270)
T ss_dssp TGG
T ss_pred ccc
Confidence 765
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-18 Score=199.83 Aligned_cols=146 Identities=25% Similarity=0.242 Sum_probs=106.7
Q ss_pred CeEEEEEEEEEcCC-CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCcceEEECCceeEEEEcccccc
Q 048654 494 PLLQLIEVSFSYPN-REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-PTEGEVRRSQKLRIGRYSQHFVD 571 (723)
Q Consensus 494 ~~l~~~~ls~~y~~-~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-p~~G~I~~~~~~~ig~~~q~~~~ 571 (723)
..|.+++...-+-. ...++++||||+ |++++|+||||||||||||+|+|+.. ++.|.+.......+++++|.+.
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~- 624 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYT- 624 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEE-
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhc-
Confidence 34667666322200 124689999998 99999999999999999999999874 6778754333334455444211
Q ss_pred ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH--ccCCCeEEeccC---
Q 048654 572 LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS--MSKPHILLLDEP--- 646 (723)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral--~~~p~lLlLDEP--- 646 (723)
. ++.... ....+|+|+++++.+++++ +.+|+|||||||
T Consensus 625 ~---------------------------------~~~~d~----l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 625 R---------------------------------IGASDD----LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp E---------------------------------CCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred c---------------------------------CCHHHH----HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 1 111110 0124799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHcCceEEEEecCHHHHH
Q 048654 647 TNHLDMQSI-DALADALDEFTGGVVLVSHDSRLIS 680 (723)
Q Consensus 647 T~~LD~~s~-~~l~~~L~~~~~tVIivSHD~~~~~ 680 (723)
|++||..+. ..+.+.|.+.+.+||++|||.+++.
T Consensus 668 Ts~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999886 5788888887789999999998864
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-18 Score=177.73 Aligned_cols=171 Identities=17% Similarity=0.173 Sum_probs=106.2
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-eEEE-CCce-------eEEEEccccccccCccccHHHH
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG-EVRR-SQKL-------RIGRYSQHFVDLLTMEETPVSY 582 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G-~I~~-~~~~-------~ig~~~q~~~~~~~~~~~~~~~ 582 (723)
+|+++++.|.+|++++|+||||||||||+++|+|.+.|.+| .|.+ .... ++..+.+.. .+..... +..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~--~~~~~~~-l~~ 100 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV--RLRQSDS-LKR 100 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTC--CGGGCHH-HHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCC--Chhhccc-ccc
Confidence 69999999999999999999999999999999999999877 5533 2110 000000000 0000000 000
Q ss_pred HHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHH-HHHHHHHHHHccCCCeEEeccCCC---C---CCH-HH
Q 048654 583 LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQ-KARVVFTSISMSKPHILLLDEPTN---H---LDM-QS 654 (723)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGq-kqRv~lAral~~~p~lLlLDEPT~---~---LD~-~s 654 (723)
...... .....+..+|...++. .. ..+..+|.+| +||+. |+++..+|++|||||||+ + +|. ..
T Consensus 101 -~~~~~~----~~~~~~~~~l~~~~l~--i~-~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 101 -EIIENG----KFDQWFDELFGNDTFH--LY-DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp -HHHHHT----HHHHHHHHHHSSSCEE--EE-CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred -CCCCHH----HHHHHHHHHhccCCEE--EE-CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 000000 0112233444433331 11 1235789999 66666 999999999999999999 5 455 56
Q ss_pred HHHHHHHHHHc----CceEEEEecCH--H--------------------HHHHhcCcCCCcEEEEEECCeE
Q 048654 655 IDALADALDEF----TGGVVLVSHDS--R--------------------LISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 655 ~~~l~~~L~~~----~~tVIivSHD~--~--------------------~~~~~~d~~~~drv~vl~~G~i 699 (723)
...+.+.|+++ +.+||+|||+. + .+..+|| +|++|++|+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD-----~vi~L~~~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD-----TIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCS-----EEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc-----EEEEEecCcc
Confidence 66777777554 57999999995 4 7888885 9999998864
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-18 Score=201.77 Aligned_cols=156 Identities=20% Similarity=0.170 Sum_probs=104.9
Q ss_pred CeEEEEEEEEEcCC---CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCcceEEECCceeE
Q 048654 494 PLLQLIEVSFSYPN---REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--------AGDLSPTEGEVRRSQKLRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~---~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L--------~Gl~~p~~G~I~~~~~~~i 562 (723)
..|.+++....+-. ...++++||+|++.+|++++|+||||||||||||+| .|...|..+.. +
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~ 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------V 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------E
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------c
Confidence 35666665433311 123688999999999999999999999999999999 55544433221 1
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH--ccCCCe
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS--MSKPHI 640 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral--~~~p~l 640 (723)
+.+. .++.++|+... ....+|+|+.+++.+|+++ +.+|+|
T Consensus 703 ~~~d----------------------------------~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 703 SIVD----------------------------------CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp ECCS----------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred hHHH----------------------------------HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 1110 01222333221 2246888888888888888 999999
Q ss_pred EEeccCCCCCCHHHHHHH-HHH---HHH-cCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 641 LLLDEPTNHLDMQSIDAL-ADA---LDE-FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l-~~~---L~~-~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
|||||||+|||+.....+ ..+ |.+ .+.+||++|||.+++ .+|| ++..|.+|++.
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad-----~~~~v~ng~v~ 803 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALAN-----QIPTVNNLHVT 803 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGG-----TCTTEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhc-----ccceeEeeEEE
Confidence 999999999999877666 333 333 356899999998766 5774 67777777764
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-19 Score=201.54 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=122.8
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..++++++++.|+ +..+|+++ |+|.+|++++|+|||||||||||++|+|+.. +..|.|.+.++.. .....+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~-----~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERG-----REVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCH-----HHHHHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceec-----HHHHHH
Confidence 3578899999998 78899999 9999999999999999999999999999864 4566676655411 011111
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-ccccCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT-KEMQGRPTKSF 321 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~L 321 (723)
.........+...+.++.+... .......+.+...... ++....+-. .... ..+..|
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~-----~~~~~~~v~~~~~~~a----------------e~~~~~~~~v~~~l-d~l~~l 259 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADV-----SPLLRMQGAAYATRIA----------------EDFRDRGQHVLLIM-DSLTRY 259 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTS-----CHHHHHHHHHHHHHHH----------------HHHHTTTCEEEEEE-ECHHHH
T ss_pred HHhhccccccCceEEEEECCCC-----CHHHHHHHHHHHHHHH----------------HHHHhCCCCHHHHH-HhHHHH
Confidence 0000000011111111111000 0000111111111100 111111100 0112 235779
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC------c------EEEEEeCCHHHHHhhCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK------K------TLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~------~------TVIivsHdl~~l~~iad~Ii~ 389 (723)
|+|| |||+|| +.+|++ |++||+.....+.++|.+++ . ||+++|||++ ..+||++++
T Consensus 260 S~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~ 327 (438)
T 2dpy_A 260 AMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARA 327 (438)
T ss_dssp HHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHH
T ss_pred HHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEE
Confidence 9999 999999 889988 99999999999999997652 2 8999999999 678999999
Q ss_pred EeCCEEEE
Q 048654 390 LHDQKLHF 397 (723)
Q Consensus 390 L~~G~i~~ 397 (723)
|.+|+++.
T Consensus 328 l~dG~Ivl 335 (438)
T 2dpy_A 328 ILDGHIVL 335 (438)
T ss_dssp HSSEEEEE
T ss_pred EeCcEEEE
Confidence 99999864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-18 Score=188.34 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=116.5
Q ss_pred EeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHH--HHHHHhh
Q 048654 182 KSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKL--REEVASL 259 (723)
Q Consensus 182 ~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~ 259 (723)
..+||++.+|++++||||||||||||+++|+|++.+. .++|.+.+.++.. .... .++..+ +..+.++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g~D~~r--~~a~-------eql~~~~~r~~i~~v 216 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFR--AAAS-------DQLEIWAERTGCEIV 216 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSC--HHHH-------HHHHHHHHHHTCEEE
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc--CCEEEEecccccc--cchh-------HHHHHHHHhcCeEEE
Confidence 4688999999999999999999999999999986543 4667766654321 1110 111111 1112222
Q ss_pred hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC
Q 048654 260 QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339 (723)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P 339 (723)
.+... .......+.+.+.... .. +.+ ..+++.+|+.+ ..++.+.+|| +||++|||||+.+|
T Consensus 217 ~q~~~-----~~~p~~tv~e~l~~~~--~~--~~d------~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P 277 (359)
T 2og2_A 217 VAEGD-----KAKAATVLSKAVKRGK--EE--GYD------VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAP 277 (359)
T ss_dssp CCSSS-----SCCHHHHHHHHHHHHH--HT--TCS------EEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCC
T ss_pred Eeccc-----ccChhhhHHHHHHHHH--hC--CCH------HHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCC
Confidence 21100 0011111112211100 00 000 12456677753 3356778899 99999999999999
Q ss_pred C--EEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeC---------CHHHHHhhCCEEEEEeCCEE
Q 048654 340 T--LLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSH---------DRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 340 ~--lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsH---------dl~~l~~iad~Ii~L~~G~i 395 (723)
+ +|||| ||++||+..+. ..+-+..+.|+|++|| .++.+...+..|.++..|+.
T Consensus 278 ~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 278 NEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp SEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999 99999998653 3333356889999999 57788888899999999864
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-18 Score=181.21 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=92.0
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-cceEEECCceeEEEEccccccccCccccHHHHHHhhCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-EGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ 590 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~ 590 (723)
+|+++| +.+|++++|+||||||||||+++|+|+++|+ +|+|...+.. +.|++|..... ..
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~~--------------v~-- 76 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKSI--------------VN-- 76 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSSE--------------EE--
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCccee--------------ee--
Confidence 789999 8999999999999999999999999999998 9999876542 33333321000 00
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEE
Q 048654 591 EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVV 670 (723)
Q Consensus 591 ~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVI 670 (723)
. ..+|+.. ..| |++||++|..+|++||||||| |+.+...+.+.. ..+.+||
T Consensus 77 ----q--------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl 127 (261)
T 2eyu_A 77 ----Q--------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVF 127 (261)
T ss_dssp ----E--------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEE
T ss_pred ----H--------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEE
Confidence 0 1234321 122 899999999999999999999 999877666654 3456899
Q ss_pred EEecCHHHHHHhcC
Q 048654 671 LVSHDSRLISRVCD 684 (723)
Q Consensus 671 ivSHD~~~~~~~~d 684 (723)
++||+.+ +..+||
T Consensus 128 ~t~H~~~-~~~~~d 140 (261)
T 2eyu_A 128 GTLHTNT-AIDTIH 140 (261)
T ss_dssp EEECCSS-HHHHHH
T ss_pred EEeCcch-HHHHHH
Confidence 9999987 445553
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-17 Score=156.42 Aligned_cols=80 Identities=30% Similarity=0.490 Sum_probs=70.0
Q ss_pred cCCCCCCCHHHHHHHHHH------HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcC
Q 048654 614 LTPIAKLSGGQKARVVFT------SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 614 ~~~i~~LSGGqkqRv~lA------ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d 684 (723)
.+++.+|||||||||+|| |+|+.+|++|||||||+|||+.++..+.+.|.++. .|||+||||.+ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 457789999999999876 89999999999999999999999999999998873 58999999995 567884
Q ss_pred cCCCcEEEEE--ECCeE
Q 048654 685 DEERSEIWVV--ENGTV 699 (723)
Q Consensus 685 ~~~~drv~vl--~~G~i 699 (723)
++++| .+|..
T Consensus 131 -----~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 -----HVIRISLENGSS 142 (148)
T ss_dssp -----EEEEEEEETTEE
T ss_pred -----EEEEEEcCCCeE
Confidence 99999 56644
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-17 Score=198.24 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=97.4
Q ss_pred ceEEEeEEEEe-------CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH
Q 048654 165 DITIDNFSVAA-------RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 165 ~I~l~nls~~y-------~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~ 237 (723)
.|.+++...-+ ++..|++||||++++|++++|+||||||||||||+|++....
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 46666554322 356799999999999999999999999999999999753100
Q ss_pred HHHHHHHhhHHHHHHHHHHHh-hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCC
Q 048654 238 AIQAVVSAHEELVKLREEVAS-LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGR 316 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 316 (723)
...+. ++.. ... ++ .+..++..+|+.+.. .+
T Consensus 700 ----------------aq~g~~vpa~-----------~~~--------------i~------~~d~i~~~ig~~d~l-~~ 731 (918)
T 3thx_B 700 ----------------AQIGSYVPAE-----------EAT--------------IG------IVDGIFTRMGAADNI-YK 731 (918)
T ss_dssp ----------------HHHTCCBSSS-----------EEE--------------EE------CCSEEEEEC---------
T ss_pred ----------------hhcCccccch-----------hhh--------------hh------HHHHHHHhCChHHHH-HH
Confidence 00000 0000 000 00 000112233443322 45
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHh----hcCcEEEEEeCCHHHHHhhCC
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLE-EYLC----RWKKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~-~~L~----~~~~TVIivsHdl~~l~~iad 385 (723)
..+++|+||+|++.|+++ +.+|+||||||||+|||+.....+. .+++ +.+.|||++||+++++. +||
T Consensus 732 ~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~ 803 (918)
T 3thx_B 732 GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEK 803 (918)
T ss_dssp --CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHH
T ss_pred hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHh
Confidence 678899999999999999 8999999999999999998766554 3333 24789999999987653 444
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-18 Score=203.26 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=99.0
Q ss_pred eEEEEEEEEEc-----CCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CcceEEECCceeEEEEccc
Q 048654 495 LLQLIEVSFSY-----PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVRRSQKLRIGRYSQH 568 (723)
Q Consensus 495 ~l~~~~ls~~y-----~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-~~G~I~~~~~~~ig~~~q~ 568 (723)
.|.+++...-+ +....++++||+|++.+|++++|+||||||||||||+|+++... ..|.........++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d-- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD-- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS--
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH--
Confidence 56666654322 11124689999999999999999999999999999999764211 01110000000111100
Q ss_pred cccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC
Q 048654 569 FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN 648 (723)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~ 648 (723)
.++..+|+..... ..++++|+|++|++.|+++ +.+|+||||||||+
T Consensus 718 --------------------------------~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~ 763 (918)
T 3thx_B 718 --------------------------------GIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGR 763 (918)
T ss_dssp --------------------------------EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTT
T ss_pred --------------------------------HHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCC
Confidence 1122233332222 3457899999999999998 89999999999999
Q ss_pred CCCHHHHHHHH-HHHHHc----CceEEEEecCHHHHHHhcC
Q 048654 649 HLDMQSIDALA-DALDEF----TGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 649 ~LD~~s~~~l~-~~L~~~----~~tVIivSHD~~~~~~~~d 684 (723)
|||+.....+. .++..+ +.+||++|||.+++ .+|+
T Consensus 764 GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~ 803 (918)
T 3thx_B 764 GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEK 803 (918)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHh
Confidence 99999877776 444433 56899999998876 3553
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-17 Score=163.63 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=46.1
Q ss_pred ChHHH-HHHHHHHHHcc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHH----hhcCcEEEEEeC--
Q 048654 322 SGGWR-MRISLARALFV-------QPTLLLLDEPTNHLDLR-------A-----VLWLEEYL----CRWKKTLVVVSH-- 375 (723)
Q Consensus 322 SGGqr-QRvaLArAL~~-------~P~lLLLDEPT~~LD~~-------~-----~~~L~~~L----~~~~~TVIivsH-- 375 (723)
+++++ +.+..+++++. +|++|+|||||++||+. . ...+...| ++.+.|||+|||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 34433 33555555555 99999999999999983 1 11333333 345789999999
Q ss_pred --CHHHHHhhCCEEEEEeCC
Q 048654 376 --DRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 376 --dl~~l~~iad~Ii~L~~G 393 (723)
+-..+..+||++++|++|
T Consensus 181 ~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 181 ANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp ---------CCSEEEEEEEC
T ss_pred cCcchhhHhhceEEEEEEec
Confidence 555599999999999875
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-18 Score=176.73 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=93.3
Q ss_pred ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC-CceeEEEEccccc-cccCccccHHHHHHhhC
Q 048654 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS-QKLRIGRYSQHFV-DLLTMEETPVSYLLRLH 587 (723)
Q Consensus 510 ~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~-~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 587 (723)
..+|+||||++.+|+++||+||||||||||+++|+|++ |.+.++ ....+++++|... ..++..++. ......+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~-~~~~~~~ 86 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKA-KALKGQY 86 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHH-HHHTTCC
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhh-hhhccCC
Confidence 35899999999999999999999999999999999976 443222 1235788888631 112222211 1111111
Q ss_pred C-CCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH-c
Q 048654 588 P-DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE-F 665 (723)
Q Consensus 588 ~-~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~-~ 665 (723)
. ..........+.+.|..+. ... ..++..||+||+||+.+ ++++.+|+++|||||+..++.. +.+ .
T Consensus 87 ~~~~~~~~~~~~~~~~L~~l~--~~~-~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~~ 154 (245)
T 2jeo_A 87 NFDHPDAFDNDLMHRTLKNIV--EGK-TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDMF 154 (245)
T ss_dssp CTTSGGGBCHHHHHHHHHHHH--TTC-CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTTC
T ss_pred CCCCcccccHHHHHHHHHHHH--CCC-CeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHhc
Confidence 1 0000011234455565542 222 34568999999999988 6888899999999998888764 222 3
Q ss_pred CceEEEEecC-HHHHHHhc
Q 048654 666 TGGVVLVSHD-SRLISRVC 683 (723)
Q Consensus 666 ~~tVIivSHD-~~~~~~~~ 683 (723)
..+|+++||+ ......++
T Consensus 155 ~~~i~v~th~~~~~~r~~~ 173 (245)
T 2jeo_A 155 HLRLFVDTDSDVRLSRRVL 173 (245)
T ss_dssp SEEEEEECCHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHH
Confidence 5689999997 55555555
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=188.41 Aligned_cols=145 Identities=20% Similarity=0.176 Sum_probs=100.4
Q ss_pred ceEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC-CCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAA---RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI-PVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y---~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~-~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.|.+++...-+ ++..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.. +. .. ..
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~----vp----a~-~~--- 614 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF----VP----AE-EA--- 614 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC----BS----SS-EE---
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce----ee----hh-cc---
Confidence 47777764333 446899999999 99999999999999999999998642 221110 00 00 00
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
.++.+.+ ++..++..+ .....
T Consensus 615 --------------~i~~v~~-----------------------------------------i~~~~~~~d----~l~~g 635 (765)
T 1ewq_A 615 --------------HLPLFDG-----------------------------------------IYTRIGASD----DLAGG 635 (765)
T ss_dssp --------------EECCCSE-----------------------------------------EEEECCC----------C
T ss_pred --------------ceeeHHH-----------------------------------------hhccCCHHH----HHHhc
Confidence 0000000 011122211 11235
Q ss_pred CChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHhhcCcEEEEEeCCHHHHHhhC
Q 048654 321 FSGGWRMRISLARAL--FVQPTLLLLDEP---TNHLDLRAV-LWLEEYLCRWKKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 321 LSGGqrQRvaLArAL--~~~P~lLLLDEP---T~~LD~~~~-~~L~~~L~~~~~TVIivsHdl~~l~~ia 384 (723)
+|+|+++++.+|++| +.+|+||||||| |++||+.+. ..+.++|.+.+.|+|++||+.++.. +|
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 799999999999999 999999999999 999999886 4688888877889999999998864 44
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=159.82 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=104.0
Q ss_pred CeeeeEeeeE-EEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHH
Q 048654 177 GKELLKSTSV-RISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREE 255 (723)
Q Consensus 177 ~~~vL~~isl-~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (723)
+.+.|+++.+ .|++|++++|+||||||||||++.|++...+ ..+.+.|++.+.. ...+. .....
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~---~~~~~----------~~~~~ 72 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEES---RDSII----------RQAKQ 72 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSC---HHHHH----------HHHHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccC---HHHHH----------HHHHH
Confidence 3567888887 8999999999999999999999999976443 2334555543221 11000 00001
Q ss_pred HHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHH
Q 048654 256 VASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL 335 (723)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL 335 (723)
++...+. .. ... +..+.. +...++ . . ......|.++.++...+.+.
T Consensus 73 ~~~~~~~-~~------~~~-------------~~~~~~---------~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~ 118 (235)
T 2w0m_A 73 FNWDFEE-YI------EKK-------------LIIIDA---------LMKEKE-D-Q---WSLVNLTPEELVNKVIEAKQ 118 (235)
T ss_dssp TTCCCGG-GB------TTT-------------EEEEEC---------CC-----C-T---TBCSSCCHHHHHHHHHHHHH
T ss_pred hcchHHH-Hh------hCC-------------EEEEec---------cccccC-c-e---eeecCCCHHHHHHHHHHHHH
Confidence 1100000 00 000 000000 000001 0 0 11123499999999888888
Q ss_pred ccCCC--EEEEeCCCCCC--CHHHHHHHHHHHh----hcCcEEEEEeCCH--------HHHHhhCCEEEEEeCCE
Q 048654 336 FVQPT--LLLLDEPTNHL--DLRAVLWLEEYLC----RWKKTLVVVSHDR--------DFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 336 ~~~P~--lLLLDEPT~~L--D~~~~~~L~~~L~----~~~~TVIivsHdl--------~~l~~iad~Ii~L~~G~ 394 (723)
..+|+ +|||||||+.+ |+..+..+.+.|. +.+.|||+++|+. ..+..+||+|++|+...
T Consensus 119 ~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 119 KLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 88999 99999999888 9877766666664 3478999999999 55889999999998653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=159.98 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=83.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHH
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (723)
.|++|++++|+||||||||||+++|+|.+.+..|.....+ ..-|+.... .+ ....+.++..... ....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~--~~i~~~~~~--~~--~~~~i~~~~~~~~----~~~~-- 88 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG--SVIWIDTEN--TF--RPERIREIAQNRG----LDPD-- 88 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSC--EEEEEESSS--CC--CHHHHHHHHHHTT----SCHH--
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCC--EEEEEECCC--CC--CHHHHHHHHHHcC----CCHH--
Confidence 6899999999999999999999999996655332211111 111221110 00 0011111111111 1111
Q ss_pred HHHHHHhCCCCCCCCcCCCCCCCHHHH-HHHHHHHHHcc-------CCCeEEeccCCCCCCHH-------H-----HHHH
Q 048654 599 VRAKLGKFGLPSHNHLTPIAKLSGGQK-ARVVFTSISMS-------KPHILLLDEPTNHLDMQ-------S-----IDAL 658 (723)
Q Consensus 599 ~~~~L~~~gl~~~~~~~~i~~LSGGqk-qRv~lAral~~-------~p~lLlLDEPT~~LD~~-------s-----~~~l 658 (723)
.+++.+.+ ...++++++ +.+..+..++. +|++|+|||||++||+. . ...+
T Consensus 89 --~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~ 158 (231)
T 4a74_A 89 --EVLKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 158 (231)
T ss_dssp --HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHH
T ss_pred --HHhhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHH
Confidence 22222221 123444443 33555555555 99999999999999983 1 1234
Q ss_pred HHHH----HHcCceEEEEec----CHHHHHHhcCcCCCcEEEEEECC
Q 048654 659 ADAL----DEFTGGVVLVSH----DSRLISRVCDDEERSEIWVVENG 697 (723)
Q Consensus 659 ~~~L----~~~~~tVIivSH----D~~~~~~~~d~~~~drv~vl~~G 697 (723)
.+.| ++.+.|||+||| +...+..+|| ++++|++|
T Consensus 159 ~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d-----~~l~l~~~ 200 (231)
T 4a74_A 159 LADLHRLANLYDIAVFVTNQVQANGGHILAHSAT-----LRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHTCEEEEEEECC---------CCS-----EEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEeecccCcchhhHhhce-----EEEEEEec
Confidence 4444 344679999999 5555888884 89999865
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-18 Score=175.18 Aligned_cols=141 Identities=17% Similarity=0.179 Sum_probs=98.2
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|++.+. ..|.|.+.+..+...
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~----------- 67 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV----------- 67 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-----------
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-----------
Confidence 344555542 5899999 8999999999999999999999999986543 145666555432100
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.++. . . .+.. ..+|+.. ..|
T Consensus 68 -------------~~~~---------~-~---------------~v~q-----------~~~gl~~-------~~l---- 87 (261)
T 2eyu_A 68 -------------FKHK---------K-S---------------IVNQ-----------REVGEDT-------KSF---- 87 (261)
T ss_dssp -------------CCCS---------S-S---------------EEEE-----------EEBTTTB-------SCH----
T ss_pred -------------cCCc---------c-e---------------eeeH-----------HHhCCCH-------HHH----
Confidence 0000 0 0 0000 0233321 122
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
|++||+||..+|++||||||| |+.+...+.+.. ..+.+||+++|+.+ +..+||++++|.
T Consensus 88 --~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 --ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp --HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred --HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 899999999999999999999 999877666554 34789999999988 556789887774
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=147.10 Aligned_cols=90 Identities=18% Similarity=0.243 Sum_probs=75.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFV----QPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~----~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii 388 (723)
.+++..||||||||++||++|+. +|++|||||||++||+.++..+.++|+++ +.++|+|||+...+ .+||+|+
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence 46788999999999999999974 46999999999999999999999999876 46899999998765 5799998
Q ss_pred EE--eCCEEEEecCChhhH
Q 048654 389 HL--HDQKLHFYRGNFDDF 405 (723)
Q Consensus 389 ~L--~~G~i~~~~g~~~~~ 405 (723)
.+ .+|....+..+.+.+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEETTEEEEEECCHHHH
T ss_pred EEEecCCEEEEEEEEcHHH
Confidence 55 578765555555444
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-16 Score=156.77 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=103.1
Q ss_pred cceeceEE-EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCC
Q 048654 511 FKLSDVDV-GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPD 589 (723)
Q Consensus 511 ~~L~~isl-~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~ 589 (723)
..|+++.+ .|.+|++++|+||||||||||++.|++...+.+|.|.+.. ... .. .............
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~--------~~~----~~-~~~~~~~~~~~~~ 76 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT--------TEE----SR-DSIIRQAKQFNWD 76 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE--------SSS----CH-HHHHHHHHHTTCC
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE--------ccc----CH-HHHHHHHHHhcch
Confidence 46788887 7999999999999999999999999998877777664321 110 00 0000111000000
Q ss_pred CCCCcHH--HHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCC--CHHHHHHHHHHHH
Q 048654 590 QEGLSKQ--EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHL--DMQSIDALADALD 663 (723)
Q Consensus 590 ~~~~~~~--~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~L--D~~s~~~l~~~L~ 663 (723)
....... ..+......++ . . ......|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~ 151 (235)
T 2w0m_A 77 FEEYIEKKLIIIDALMKEKE-D-Q---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLK 151 (235)
T ss_dssp CGGGBTTTEEEEECCC-----C-T---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHH
T ss_pred HHHHhhCCEEEEeccccccC-c-e---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHH
Confidence 0000000 00000000001 0 0 1123459999999888888888999 99999999888 9888777777776
Q ss_pred Hc----CceEEEEecCH--------HHHHHhcCcCCCcEEEEEECC
Q 048654 664 EF----TGGVVLVSHDS--------RLISRVCDDEERSEIWVVENG 697 (723)
Q Consensus 664 ~~----~~tVIivSHD~--------~~~~~~~d~~~~drv~vl~~G 697 (723)
++ +.+||++||+. ..+..+|| +|++|+..
T Consensus 152 ~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d-----~vi~l~~~ 192 (235)
T 2w0m_A 152 RVLNKWNFTIYATSQYAITTSQAFGFGVEHVAD-----GIIRFRRM 192 (235)
T ss_dssp HHHHHTTEEEEEEEC-----------CHHHHCS-----EEEEEEEE
T ss_pred HHHHhCCCeEEEEeccCcccccccccchheeee-----EEEEEEEE
Confidence 54 56999999999 55888885 89999753
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-17 Score=169.96 Aligned_cols=164 Identities=11% Similarity=0.065 Sum_probs=85.5
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC-CCCC--CcEEEEEeeeeecCCChHHHHHHHHhhHHHHH
Q 048654 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK-IPVP--KNIDVLLVEQEVVGDDRSAIQAVVSAHEELVK 251 (723)
Q Consensus 175 y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~-~~~~--~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 251 (723)
-+++++|+|+||++++|+++||+||||||||||+++|+|+. ...- ....+.++.++......+....
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~---------- 78 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQK---------- 78 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHH----------
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHh----------
Confidence 36678999999999999999999999999999999999852 1100 0012233333211111111000
Q ss_pred HHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHH
Q 048654 252 LREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331 (723)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaL 331 (723)
.......... ..+ . ......+.+.|+.+. .....++..||+||+||+++
T Consensus 79 ----~~~~~~~~~~---~~~--~-------------------~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~ 127 (245)
T 2jeo_A 79 ----AKALKGQYNF---DHP--D-------------------AFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE 127 (245)
T ss_dssp ----HHHHTTCCCT---TSG--G-------------------GBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS
T ss_pred ----hhhhccCCCC---CCc--c-------------------cccHHHHHHHHHHHH---CCCCeecccccccccCccCc
Confidence 0000000000 000 0 000112233344331 12246678999999999988
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCC-HHHHHhhCCEE
Q 048654 332 ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHD-RDFLNTVCTEI 387 (723)
Q Consensus 332 ArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHd-l~~l~~iad~I 387 (723)
++++.+|++||||||+..++.. +.+ ..+.+|+++||+ ......+++++
T Consensus 128 -~~~~~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 128 -TTVVYPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp -CEEECCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred -eEEecCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence 6889999999999999888864 211 136799999997 44445555544
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-16 Score=159.36 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=97.7
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCcceEEECCce----eEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL-----SPTEGEVRRSQKL----RIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~-----~p~~G~I~~~~~~----~ig~~ 565 (723)
+|+++|++|.|+. .++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+.. .+..+
T Consensus 3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 5789999999962 46777 889999999999999999999999999998 7888876532110 01010
Q ss_pred --ccccccccCcc-----ccHHHHHHhhCCC----------CCCCc-HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHH
Q 048654 566 --SQHFVDLLTME-----ETPVSYLLRLHPD----------QEGLS-KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKAR 627 (723)
Q Consensus 566 --~q~~~~~~~~~-----~~~~~~~~~~~~~----------~~~~~-~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqR 627 (723)
+-......... ...+......... ..... ....+..++..++++......++..+|+||+||
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~ 157 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA 157 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence 00000000000 0001111110000 00111 223456677778876433234568899999999
Q ss_pred -HHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc
Q 048654 628 -VVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665 (723)
Q Consensus 628 -v~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~ 665 (723)
+.++++++.+|.++++||||+++|..+...+.+.|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999998775
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-18 Score=170.47 Aligned_cols=145 Identities=12% Similarity=0.003 Sum_probs=102.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHH
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV 599 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (723)
..+|++++|+||||||||||+++|+|++.| .+++++|.....-....+........+.. .+......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDH-PDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS-GGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCC-hhhhhHHHH
Confidence 468999999999999999999999998875 47788876421100111111111111111 111134557
Q ss_pred HHHHHhCCCCCCCCcCCCCCCCHHH----HHHHHHHHHHccCCCeEEeccCCCC-------CCHHHHHHHHHHHHHc---
Q 048654 600 RAKLGKFGLPSHNHLTPIAKLSGGQ----KARVVFTSISMSKPHILLLDEPTNH-------LDMQSIDALADALDEF--- 665 (723)
Q Consensus 600 ~~~L~~~gl~~~~~~~~i~~LSGGq----kqRv~lAral~~~p~lLlLDEPT~~-------LD~~s~~~l~~~L~~~--- 665 (723)
.+++..+++..... +|+..+|+|+ +||+++|++++.+|.+|++||||++ ||+.....+.+.+.+.
T Consensus 71 ~~~l~~~~~~~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~ 149 (211)
T 3asz_A 71 LEHAQALLRGLPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE 149 (211)
T ss_dssp HHHHHHHHTTCCEE-ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcC-CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 77888888765443 5788999996 4788999999999999999999999 9998888888877654
Q ss_pred -CceEEEEecCHH
Q 048654 666 -TGGVVLVSHDSR 677 (723)
Q Consensus 666 -~~tVIivSHD~~ 677 (723)
+.++++++|+..
T Consensus 150 ~g~t~~~~~~~~~ 162 (211)
T 3asz_A 150 RGRSLEGVVAQYL 162 (211)
T ss_dssp SCCCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 568899999853
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-17 Score=161.21 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=61.5
Q ss_pred CCCCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCcEEE---EEeCCHHHHHhhCC
Q 048654 315 GRPTKSFSGGWRMRI-SLAR---ALFVQPTLLLLDE--PTNHLDLRAVLWLEEYLCRWKKTLV---VVSHDRDFLNTVCT 385 (723)
Q Consensus 315 ~~~~~~LSGGqrQRv-aLAr---AL~~~P~lLLLDE--PT~~LD~~~~~~L~~~L~~~~~TVI---ivsHdl~~l~~iad 385 (723)
+++...+|+|||+++ +|++ |++.+|+|||||| |++.+|+.....|.++|.....+|| .||||.+ ..++|
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~--~~~vd 155 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVE 155 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHH
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc--hHHHH
Confidence 455667999999998 4455 6899999999999 9999999999999999987644443 4559873 23444
Q ss_pred EEEEEeCCEEEEe
Q 048654 386 EIIHLHDQKLHFY 398 (723)
Q Consensus 386 ~Ii~L~~G~i~~~ 398 (723)
+|..+++|+|+..
T Consensus 156 ~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 156 EIRNRKDVKVFNV 168 (189)
T ss_dssp HHHTTCCSEEEEC
T ss_pred HHeecCCcEEEEe
Confidence 5555577777643
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-15 Score=154.88 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=55.9
Q ss_pred HHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---HHHHHHHHh----hcCcEE
Q 048654 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN--HLDLRA---VLWLEEYLC----RWKKTL 370 (723)
Q Consensus 300 ~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~--~LD~~~---~~~L~~~L~----~~~~TV 370 (723)
+..+++.+++.+ ..++++..||+||.|++ ++++.+|++|||||||+ ++|... ...+.+.|. +.+.||
T Consensus 99 ~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 445677777754 34678999999997765 68889999999999999 999732 344444443 457899
Q ss_pred EEEeCCHHHHH
Q 048654 371 VVVSHDRDFLN 381 (723)
Q Consensus 371 IivsHdl~~l~ 381 (723)
|+|+|+.....
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999987654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=140.68 Aligned_cols=93 Identities=23% Similarity=0.319 Sum_probs=75.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcc----CCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCC
Q 048654 615 TPIAKLSGGQKARVVFTSISMS----KPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEER 688 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral~~----~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~ 688 (723)
+++..||||||||++||++|+. +|+++||||||++||+.+...+.++|+++. .++|+|||+...+ .+||
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad---- 134 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANAD---- 134 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCS----
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCC----
Confidence 5678999999999999999974 569999999999999999999999999874 5899999998764 5774
Q ss_pred cEEEEE--ECCeEEecCCCHHHHHHHH
Q 048654 689 SEIWVV--ENGTVSRFPGTFEEYKEDL 713 (723)
Q Consensus 689 drv~vl--~~G~i~~~~g~~~~~~~~~ 713 (723)
+++.+ .+|....+..+.+++.+..
T Consensus 135 -~i~~v~~~~g~s~~~~~~~~~~~~~~ 160 (173)
T 3kta_B 135 -KIIGVSMRDGVSKVVSLSLEKAMKIL 160 (173)
T ss_dssp -EEEEEEEETTEEEEEECCHHHHHHHH
T ss_pred -EEEEEEecCCEEEEEEEEcHHHHHHH
Confidence 88855 5786655555666655433
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.6e-16 Score=154.94 Aligned_cols=179 Identities=13% Similarity=0.131 Sum_probs=96.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC-----CCCCCcEEE----EEee-eee---
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK-----IPVPKNIDV----LLVE-QEV--- 231 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~-----~~~~~~~~i----~~~~-q~~--- 231 (723)
+|+++|++|.|+ .++|++ |.+.+|.+++|+|+||||||||++.|+|.. .+.+|...+ .+.+ ..+
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 488999999997 577887 889999999999999999999999999876 333332211 0101 111
Q ss_pred cCCChHHHHHHHHhhHHHHHHHHHHHh-hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 048654 232 VGDDRSAIQAVVSAHEELVKLREEVAS-LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT 310 (723)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~ 310 (723)
.+....... .. ....+...+.. ++......... .... .. ........++..++...++.
T Consensus 80 ~G~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~-~v~d--~~------------~~~~~~~~~~~~~~~~~~~~ 139 (210)
T 1pui_A 80 PGYGYAEVP---EE--MKRKWQRALGEYLEKRQSLQGLV-VLMD--IR------------HPLKDLDQQMIEWAVDSNIA 139 (210)
T ss_dssp CCCC---------C--CHHHHHHHHHHHHHHCTTEEEEE-EEEE--TT------------SCCCHHHHHHHHHHHHTTCC
T ss_pred cCCcccccC---HH--HHHHHHHHHHHHHHhhhcccEEE-EEEE--CC------------CCCchhHHHHHHHHHHcCCC
Confidence 111100000 00 00000111111 11000000000 0000 00 00001122344556667776
Q ss_pred ccccCCCCCCCChHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 048654 311 KEMQGRPTKSFSGGWRMR-ISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW 366 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQR-vaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~ 366 (723)
......++..+|+||+|| +.++++++.+|.++++|||||+||..++..+.+.|.++
T Consensus 140 ~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 140 VLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred eEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 433356778899999999 89999999999999999999999999999998888754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-17 Score=171.42 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=75.4
Q ss_pred EEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC-CCCCcceEEECCc--------eeEEEEcccc
Q 048654 499 IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD-LSPTEGEVRRSQK--------LRIGRYSQHF 569 (723)
Q Consensus 499 ~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl-~~p~~G~I~~~~~--------~~ig~~~q~~ 569 (723)
.||++.|++. .++++++|+| +|+||||+|||||+++|+|. +.|++| |...+. ..+++++|..
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC--
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC
Confidence 4788999753 5899999998 99999999999999999998 888888 543221 1245555532
Q ss_pred --ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCC
Q 048654 570 --VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647 (723)
Q Consensus 570 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT 647 (723)
...+++.+++-... .... .... ...+..+... ....+.++|||||||+.+||+++ +|++||||
T Consensus 73 ~~~~~ltv~Dt~g~~~-~~~~-~e~~--~~l~~~l~~~-------~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt 137 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGD-AINC-RDCF--KTIISYIDEQ-------FERYLHDESGLNRRHIIDNRVHC----CFYFISPF 137 (301)
T ss_dssp -CCEEEEEEEEC-------------C--TTHHHHHHHH-------HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSS
T ss_pred CcccCcchhhhhhhhh-hcCc-HHHH--HHHHHHHHHH-------HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCc
Confidence 12233333322110 0000 0000 0011111111 12345789999999999999986 99999999
Q ss_pred CC-CCHHHHHHHHHHHHH-cCceEEEEecCHH
Q 048654 648 NH-LDMQSIDALADALDE-FTGGVVLVSHDSR 677 (723)
Q Consensus 648 ~~-LD~~s~~~l~~~L~~-~~~tVIivSHD~~ 677 (723)
++ ||+.... ++..+.. .+.++|+++||+.
T Consensus 138 ~~~Ld~~~~~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 138 GHGLKPLDVA-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSCCHHHHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred ccCCCHHHHH-HHHHHHhcCCEEEEEEeCCCC
Confidence 85 9998753 3333332 2457899999973
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.8e-15 Score=153.37 Aligned_cols=147 Identities=16% Similarity=0.090 Sum_probs=92.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC----ceeEEEEccccccccCccccHHHHHHhhCCCCCCCc
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ----KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS 594 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~----~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (723)
.|.+|++++|+||||||||||++.|++.+. .|.+.... ...+.|+..... . ......+.......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~----~-~~~~~r~~~~g~~~---- 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP----P-TAIHHRLHALGAHL---- 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC----H-HHHHHHHHHHHTTS----
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC----H-HHHHHHHHHHHhhc----
Confidence 378999999999999999999999998654 34442210 123445433210 0 00111111111111
Q ss_pred HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC--CCCHHH---HHHHHHHHHH----c
Q 048654 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN--HLDMQS---IDALADALDE----F 665 (723)
Q Consensus 595 ~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~--~LD~~s---~~~l~~~L~~----~ 665 (723)
.......+++.+++.... .+++..||+||.+++ ++++.+|++|||||||+ ++|... ...++..|.. .
T Consensus 95 ~~~~~~~~~~~l~l~~~~-~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 95 SAEERQAVADGLLIQPLI-GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp CHHHHHHHHHHEEECCCT-TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhccCceEEeecC-CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 123355677888876544 356789999997765 67888999999999999 999743 3555555544 4
Q ss_pred CceEEEEecCHHHHH
Q 048654 666 TGGVVLVSHDSRLIS 680 (723)
Q Consensus 666 ~~tVIivSHD~~~~~ 680 (723)
+.|||+|||+.....
T Consensus 171 g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 171 GCSIVFLHHASKGAA 185 (279)
T ss_dssp CCEEEEEEEC-----
T ss_pred CCEEEEEecCCCccc
Confidence 579999999988763
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-16 Score=168.39 Aligned_cols=143 Identities=19% Similarity=0.179 Sum_probs=91.6
Q ss_pred EEEEEcCCCcccceeceEE-------EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-cceEEECCceeEEEEcccccc
Q 048654 500 EVSFSYPNREDFKLSDVDV-------GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-EGEVRRSQKLRIGRYSQHFVD 571 (723)
Q Consensus 500 ~ls~~y~~~~~~~L~~isl-------~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-~G~I~~~~~~~ig~~~q~~~~ 571 (723)
.++++|.....+.|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ .|.|...... +.+..+....
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~-~e~~~~~~~~ 171 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP-IEFVHESKKC 171 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc-HHhhhhcccc
Confidence 4555553333344566655 67888999999999999999999999999987 5666422110 0000000000
Q ss_pred ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCC
Q 048654 572 LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651 (723)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD 651 (723)
. +.+. .++ ...++-.+ +||++|..+|++||||||| |
T Consensus 172 ~--v~q~--------------------------~~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d 207 (356)
T 3jvv_A 172 L--VNQR--------------------------EVH---------RDTLGFSE----ALRSALREDPDIILVGEMR---D 207 (356)
T ss_dssp E--EEEE--------------------------EBT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---S
T ss_pred c--eeee--------------------------eec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---C
Confidence 0 0000 000 01122222 9999999999999999999 8
Q ss_pred HHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEE
Q 048654 652 MQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVV 694 (723)
Q Consensus 652 ~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl 694 (723)
.++...+.++.. .+.+||+++|+.+.+ .+|| |+++|
T Consensus 208 ~e~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~d-----Rli~l 243 (356)
T 3jvv_A 208 LETIRLALTAAE-TGHLVFGTLHTTSAA-KTID-----RVVDV 243 (356)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEESCSSHH-HHHH-----HHHHT
T ss_pred HHHHHHHHHHHh-cCCEEEEEEccChHH-HHHH-----HHhhh
Confidence 888776666543 367899999999987 5663 66655
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-15 Score=176.25 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=95.8
Q ss_pred ceEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAA-----RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y-----~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.|.+++..--. +++.+++|++|+ ++|++++|+||||||||||||+|+|+.... ..|. ++.. ...
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q~G~--~vpa----~~~--- 645 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-YIGS--YVPA----QKV--- 645 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-TTTC--CBSS----SEE---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-hcCc--ccch----hcc---
Confidence 46666543221 456799999999 999999999999999999999999852110 0000 0000 000
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
.++.+.+ ++..+|..+.. ....+
T Consensus 646 ---------------~i~~~~~-----------------------------------------i~~~~~~~d~l-~~~~s 668 (800)
T 1wb9_A 646 ---------------EIGPIDR-----------------------------------------IFTRVGAADDL-ASGRS 668 (800)
T ss_dssp ---------------EECCCCE-----------------------------------------EEEEEC-----------
T ss_pred ---------------cceeHHH-----------------------------------------HHhhCCHHHHH-Hhhhh
Confidence 0000000 00111111111 12334
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHhh-cCcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAV----LWLEEYLCR-WKKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~----~~L~~~L~~-~~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++|+++++ ++.+..++.+|+||||||||+|+|+... ..+.+.|.+ .+.++|++||+.+++. +||++..+.+|+
T Consensus 669 tf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~ 746 (800)
T 1wb9_A 669 TFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVH 746 (800)
T ss_dssp -CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEE
T ss_pred hhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEE
Confidence 67777765 4555557999999999999888887433 334555555 4789999999998764 788776666555
Q ss_pred E
Q 048654 395 L 395 (723)
Q Consensus 395 i 395 (723)
+
T Consensus 747 ~ 747 (800)
T 1wb9_A 747 L 747 (800)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-17 Score=172.13 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=48.5
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHH
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFL 380 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l 380 (723)
..+.+|||||+|||+||||++. +++|||||.+||+.....+. .|.+. .+||+|.|..+.+
T Consensus 94 ~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~-~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 94 FLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMK-HLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHH-HHHTT-SEEEEEETTGGGS
T ss_pred hhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHH-HHHhc-CcEEEEEeccccC
Confidence 4456899999999999999987 99999999999998855444 45554 7888888875543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-15 Score=147.05 Aligned_cols=150 Identities=18% Similarity=0.114 Sum_probs=94.3
Q ss_pred eeeEeeeE-EEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHH
Q 048654 179 ELLKSTSV-RISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA 257 (723)
Q Consensus 179 ~vL~~isl-~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (723)
+.|+.+.. -|++|++++|+||||||||||++.|++ .++ ..+.|+..+.. ..... +.....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~----~~~-~~v~~i~~~~~-~~~~~-------------~~~~~~ 67 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL----LSG-KKVAYVDTEGG-FSPER-------------LVQMAE 67 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH----HHC-SEEEEEESSCC-CCHHH-------------HHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH----HcC-CcEEEEECCCC-CCHHH-------------HHHHHH
Confidence 34555554 689999999999999999999999997 122 34445443211 01110 000000
Q ss_pred hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH--HHHHHHHHHH
Q 048654 258 SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW--RMRISLARAL 335 (723)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq--rQRvaLArAL 335 (723)
. .+.. ..++++.+. +..+|+++ +++++.++++
T Consensus 68 ---~-----------------------------~~~~-----~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l 101 (220)
T 2cvh_A 68 ---T-----------------------------RGLN-----PEEALSRFI---------LFTPSDFKEQRRVIGSLKKT 101 (220)
T ss_dssp ---T-----------------------------TTCC-----HHHHHHHEE---------EECCTTTSHHHHHHHHHHHH
T ss_pred ---h-----------------------------cCCC-----hHHHhhcEE---------EEecCCHHHHHHHHHHHHHH
Confidence 0 0000 001222221 12334443 6788889999
Q ss_pred ccC-CCEEEEeCCCCCCCHH--------HHHHH----HHHHhhcCcEEEEEeCCHH-------------HHHhhCCEEEE
Q 048654 336 FVQ-PTLLLLDEPTNHLDLR--------AVLWL----EEYLCRWKKTLVVVSHDRD-------------FLNTVCTEIIH 389 (723)
Q Consensus 336 ~~~-P~lLLLDEPT~~LD~~--------~~~~L----~~~L~~~~~TVIivsHdl~-------------~l~~iad~Ii~ 389 (723)
+.+ |++||+||||+.||+. ....+ .++.++.+.|||+++|... .+..+||.|++
T Consensus 102 ~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~ 181 (220)
T 2cvh_A 102 VDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILR 181 (220)
T ss_dssp CCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEE
T ss_pred hhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEE
Confidence 986 9999999999999973 22333 3333445789999999865 67889999999
Q ss_pred EeCC
Q 048654 390 LHDQ 393 (723)
Q Consensus 390 L~~G 393 (723)
|+..
T Consensus 182 l~~~ 185 (220)
T 2cvh_A 182 LDKL 185 (220)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9854
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.6e-15 Score=166.93 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=70.9
Q ss_pred CCCCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 316 RPTKSF-SGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 316 ~~~~~L-SGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
+++..| ||||+|||+||+||+.+| ++|||||||+|||+.+...|.++|+++ +.|||+|||+++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 999999999999999999999988765 679999999999886 69999999
Q ss_pred eCCE
Q 048654 391 HDQK 394 (723)
Q Consensus 391 ~~G~ 394 (723)
+++.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 6553
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-15 Score=179.78 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=85.6
Q ss_pred ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCcceEEECCceeEEEEccccccccCccccHHHHHHhhCC
Q 048654 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-PTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHP 588 (723)
Q Consensus 510 ~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 588 (723)
..+++|++|+ .+|++++|+||||||||||||+|+|+.. ...|.........++++.|.+.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~------------------ 655 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFT------------------ 655 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEE------------------
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHh------------------
Confidence 3589999999 9999999999999999999999999743 2233211111112333322110
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHH----HHHHHHH
Q 048654 589 DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDA----LADALDE 664 (723)
Q Consensus 589 ~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~----l~~~L~~ 664 (723)
.++...... ....++|+|+++ ++.+..++.+|+||||||||+|+|+..... +.+.|.+
T Consensus 656 ----------------~~~~~d~l~-~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 656 ----------------RVGAADDLA-SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp ----------------EEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred ----------------hCCHHHHHH-hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 011111110 122457777765 444455689999999999988888755443 3444444
Q ss_pred -cCceEEEEecCHHHHHHhcC
Q 048654 665 -FTGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 665 -~~~tVIivSHD~~~~~~~~d 684 (723)
.+.+||++|||.+++. +||
T Consensus 718 ~~g~~vl~~TH~~el~~-l~d 737 (800)
T 1wb9_A 718 KIKALTLFATHYFELTQ-LPE 737 (800)
T ss_dssp TTCCEEEEECSCGGGGG-HHH
T ss_pred ccCCeEEEEeCCHHHHH-Hhh
Confidence 3578999999998764 774
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-17 Score=166.94 Aligned_cols=144 Identities=19% Similarity=0.090 Sum_probs=94.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDG 267 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (723)
.++|+++||+||||||||||+++|+|++.+ .+.++.++.......... ..........
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----~i~~v~~d~~~~~~~~~~-----------~~~~~~~~~~------ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----RVALLPMDHYYKDLGHLP-----------LEERLRVNYD------ 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----GEEEEEGGGCBCCCTTSC-----------HHHHHHSCTT------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecCccccCccccc-----------HHHhcCCCCC------
Confidence 578999999999999999999999987432 244455443211100000 0000000000
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH----HHHHHHHHHHccCCCEEE
Q 048654 268 EEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW----RMRISLARALFVQPTLLL 343 (723)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq----rQRvaLArAL~~~P~lLL 343 (723)
........++.++++.+++.... .+++..+|+|+ +||+++|++++.+|.+|+
T Consensus 61 -----------------------~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~ 116 (211)
T 3asz_A 61 -----------------------HPDAFDLALYLEHAQALLRGLPV-EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVL 116 (211)
T ss_dssp -----------------------SGGGBCHHHHHHHHHHHHTTCCE-EECCEETTTTEECSSCEEECCCSEEEEESTTTT
T ss_pred -----------------------ChhhhhHHHHHHHHHHHHcCCCc-CCCcccCcccCCCCCeEEeCCCcEEEEeehhhc
Confidence 00000123344556666665433 46788999997 478899999999999999
Q ss_pred EeCCCCC-------CCHHHHHHHHHHHhhc----CcEEEEEeCCH
Q 048654 344 LDEPTNH-------LDLRAVLWLEEYLCRW----KKTLVVVSHDR 377 (723)
Q Consensus 344 LDEPT~~-------LD~~~~~~L~~~L~~~----~~TVIivsHdl 377 (723)
+||||++ ||+.....+.+.+.+. +.|+++++|+.
T Consensus 117 ~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 117 YPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp SSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999 8998888777777543 77999999985
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-15 Score=158.90 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=93.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------------eeEEEEccccccccCccccHHHHHH
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------------LRIGRYSQHFVDLLTMEETPVSYLL 584 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------------~~ig~~~q~~~~~~~~~~~~~~~~~ 584 (723)
+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+++++|.... ....+....+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~--~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGT--DSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTC--CHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCC--CHHHHHHHHHH
Confidence 68999999999999999999999999999999987542 124555554210 00000000000
Q ss_pred hhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCCCHHHHHHHHHHH
Q 048654 585 RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHLDMQSIDALADAL 662 (723)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~LD~~s~~~l~~~L 662 (723)
... ..+. . ..+++..|+.+. ....++..++||++|||+++.+|+ +|.|| |+++.+.. ..+..+-
T Consensus 179 ~~~--~~~~-d----~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~ 244 (304)
T 1rj9_A 179 AMK--ARGY-D----LLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFH 244 (304)
T ss_dssp HHH--HHTC-S----EEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHH
T ss_pred HHH--hCCC-C----EEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHH
Confidence 000 0000 0 001222333211 112345666999999999999999 67777 66666532 2333333
Q ss_pred HHcCceEEEEecCHHH-----HHHhcCcCCCcEEEEEECCeE
Q 048654 663 DEFTGGVVLVSHDSRL-----ISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 663 ~~~~~tVIivSHD~~~-----~~~~~d~~~~drv~vl~~G~i 699 (723)
...+.|+|+|||+... +..++. ...--|.++..|+-
T Consensus 245 ~~~~~t~iivTh~d~~a~gg~~l~i~~-~~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDGTAKGGVLIPIVR-TLKVPIKFVGVGEG 285 (304)
T ss_dssp HHHCCSEEEEECTTSSCCCTTHHHHHH-HHCCCEEEEECSSS
T ss_pred HHcCCcEEEEECCcccccccHHHHHHH-HHCCCeEEEeCCCC
Confidence 4456799999998432 111110 01135777877764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-15 Score=176.95 Aligned_cols=173 Identities=16% Similarity=0.236 Sum_probs=91.8
Q ss_pred CeEEEEEEEEEcCCCcccceece----------EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CcceEEECCce--
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDV----------DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVRRSQKL-- 560 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~i----------sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-~~G~I~~~~~~-- 560 (723)
+.+.++|+++.|+....++|+.+ +|+++. ++|+|||||||||||++|+|++.| ++|.|++.+..
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46789999999975322344444 355553 999999999999999999999988 79999766532
Q ss_pred ------------eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Q 048654 561 ------------RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA 626 (723)
Q Consensus 561 ------------~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkq 626 (723)
.++|++|... +..++.++ +......++.... .+| ++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~--------------------i~~~~~~~~~~~~-------~~s---~~ 135 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKE--------------------INKAQNAIAGEGM-------GIS---HE 135 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTT--------------------HHHHHHHHHCSSS-------CCC---SC
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHH--------------------HHHHHHHhcCCcc-------ccc---hH
Confidence 2445554321 10111111 1111111221110 011 11
Q ss_pred HHHHHHHHccCCCeEEeccC------CCCCCHHHHHHHHHHHHHc-----CceEEEEecCHH--------HHHHhcCcCC
Q 048654 627 RVVFTSISMSKPHILLLDEP------TNHLDMQSIDALADALDEF-----TGGVVLVSHDSR--------LISRVCDDEE 687 (723)
Q Consensus 627 Rv~lAral~~~p~lLlLDEP------T~~LD~~s~~~l~~~L~~~-----~~tVIivSHD~~--------~~~~~~d~~~ 687 (723)
++.++.+....|+++|+||| |+|||+.....+.+++.++ ..+++++|||++ ++..+. ...
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~-~~g 214 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD-PEG 214 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC-SSC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh-hcC
Confidence 22233334558999999999 9999999999999999986 246899999976 333332 122
Q ss_pred CcEEEEEECCeEE
Q 048654 688 RSEIWVVENGTVS 700 (723)
Q Consensus 688 ~drv~vl~~G~i~ 700 (723)
...|.|+.++.++
T Consensus 215 ~rtI~VlTK~Dlv 227 (608)
T 3szr_A 215 DRTIGILTKPDLV 227 (608)
T ss_dssp CSEEEEEECGGGS
T ss_pred CceEEEecchhhc
Confidence 3578888877654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-16 Score=167.08 Aligned_cols=164 Identities=18% Similarity=0.147 Sum_probs=71.5
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC-CCCCCCcEEEEEeeeeecCCChHHHHHHHHhhH
Q 048654 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR-KIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHE 247 (723)
Q Consensus 169 ~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~-~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 247 (723)
.||+++|+++.++++++|+| +|||+||+|||||+++|.|. ..+ ..+ +.+.+..+.. +.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~---t~--------- 60 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIER---TV--------- 60 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------------
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCC---cc---------
Confidence 47899999999999999998 99999999999999999986 333 223 3222211110 00
Q ss_pred HHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHH
Q 048654 248 ELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRM 327 (723)
Q Consensus 248 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQ 327 (723)
. ...+.+..+.... .....+.+..... .... ..+.....+..+.+ ..++++.++|||+||
T Consensus 61 ---~-~~~~~~~~q~~~~------~~~ltv~Dt~g~~-~~~~--~~e~~~~l~~~l~~-------~~~~~~~~~sgg~rq 120 (301)
T 2qnr_A 61 ---Q-IEASTVEIEERGV------KLRLTVVDTPGYG-DAIN--CRDCFKTIISYIDE-------QFERYLHDESGLNRR 120 (301)
T ss_dssp --------CEEEEC---C------CEEEEEEEEC--------------CTTHHHHHHH-------HHHHHHHHHTSSCCT
T ss_pred ---e-EeeEEEEecCCCc------ccCcchhhhhhhh-hhcC--cHHHHHHHHHHHHH-------HHHHHHHHhCHHhhh
Confidence 0 0000000000000 0000000000000 0000 00000001111111 123566789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCC-CCHHHHHHHHHHHhh-cCcEEEEEeCCHH
Q 048654 328 RISLARALFVQPTLLLLDEPTNH-LDLRAVLWLEEYLCR-WKKTLVVVSHDRD 378 (723)
Q Consensus 328 RvaLArAL~~~P~lLLLDEPT~~-LD~~~~~~L~~~L~~-~~~TVIivsHdl~ 378 (723)
|+.+|||++ +|++||||++ ||+.....+.. +.. .+.++|+++||+.
T Consensus 121 rv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~-l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 121 HIIDNRVHC----CFYFISPFGHGLKPLDVAFMKA-IHNKVNIVPVIAKADTL 168 (301)
T ss_dssp TCCCCCCCE----EEEEECSSSSSCCHHHHHHHHH-HTTTSCEEEEECCGGGS
T ss_pred hhhhhhhhh----eeeeecCcccCCCHHHHHHHHH-HHhcCCEEEEEEeCCCC
Confidence 999999986 9999999985 99988643333 332 3568899999974
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-14 Score=161.34 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=70.0
Q ss_pred CCCCCC-CHHHHHHHHHHHHHccCC--CeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCc
Q 048654 615 TPIAKL-SGGQKARVVFTSISMSKP--HILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERS 689 (723)
Q Consensus 615 ~~i~~L-SGGqkqRv~lAral~~~p--~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~d 689 (723)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...|.++|+++. .+||+||||++++. +||
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d----- 465 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAH----- 465 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSS-----
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCC-----
Confidence 577888 999999999999999999 9999999999999999999999998873 68999999999886 684
Q ss_pred EEEEEECC
Q 048654 690 EIWVVENG 697 (723)
Q Consensus 690 rv~vl~~G 697 (723)
++++|.++
T Consensus 466 ~~~~~~~~ 473 (517)
T 4ad8_A 466 HHYKVEKQ 473 (517)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 99999554
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-15 Score=162.07 Aligned_cols=156 Identities=16% Similarity=0.095 Sum_probs=88.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc--eEEECC-----ceeEEEEc
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG--EVRRSQ-----KLRIGRYS 566 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G--~I~~~~-----~~~ig~~~ 566 (723)
.+|.++||++.|++. .++++++|+| +|+|+||||||||+++|+|+..|..| .+.... ...+++++
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp -----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred CcEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 468999999999753 5899999998 99999999999999999999875444 111110 12345555
Q ss_pred ccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC---eE
Q 048654 567 QHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH---IL 641 (723)
Q Consensus 567 q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~---lL 641 (723)
|.. ...+++.+++.... ... . ......+...+. ..++.+++||++|||+++.+|+ +|
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~-~~~-~---~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL 143 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGD-AVD-N---SNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCL 143 (418)
T ss_dssp -----CEEEEEEECC----------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEE
T ss_pred ecCCcccceeeeechhhhh-hcc-c---hhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 532 11233334422110 000 0 000011222221 1355677789999999999999 99
Q ss_pred EeccCC-CCCCHHHHHHHHHHHHHcCceEEEEecCHH
Q 048654 642 LLDEPT-NHLDMQSIDALADALDEFTGGVVLVSHDSR 677 (723)
Q Consensus 642 lLDEPT-~~LD~~s~~~l~~~L~~~~~tVIivSHD~~ 677 (723)
++|||| .+||+..... ++.|.. +.+||+|.|-.+
T Consensus 144 ~ldePt~~~L~~~d~~~-lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 144 YFIAPSGHGLKPLDIEF-MKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp EECCC-CCSCCHHHHHH-HHHHTT-TSEEEEEEESTT
T ss_pred EEecCcccCCCHHHHHH-HHHHhc-cCcEEEEEEccc
Confidence 999999 6999887533 334443 456777777554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.2e-15 Score=158.60 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=49.9
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 330 SLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 330 aLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+||+||.++|++||||||| |..+...+.+.. ..|.|||+++|+.+.+ .+|||++.|..
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 9999999999999999999 788777766653 4488999999999988 67999988844
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-14 Score=154.26 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=89.6
Q ss_pred eeeeEee-eEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCc----EEEEEeeeeecCCChHHHHHHHHhhHHHHHH
Q 048654 178 KELLKST-SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN----IDVLLVEQEVVGDDRSAIQAVVSAHEELVKL 252 (723)
Q Consensus 178 ~~vL~~i-sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~----~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l 252 (723)
.+.|+.+ ++.|++|++++|+||||||||||++.|++.....|.. +.+.|++.+.. .....
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~-~~~~~-------------- 181 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPER-------------- 181 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC-CCHHH--------------
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC-CCHHH--------------
Confidence 3456665 6899999999999999999999999999876322222 46444433211 11110
Q ss_pred HHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHH
Q 048654 253 REEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331 (723)
Q Consensus 253 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaL 331 (723)
+..+ +.... .. ..+++.+-+. +. .-|.+++|++.+
T Consensus 182 ---i~~i~q~~~~--------~~--------------------------~~v~~ni~~~-----~~--~~~~~~~~~l~~ 217 (349)
T 1pzn_A 182 ---IREIAQNRGL--------DP--------------------------DEVLKHIYVA-----RA--FNSNHQMLLVQQ 217 (349)
T ss_dssp ---HHHHHHTTTC--------CH--------------------------HHHGGGEEEE-----EC--CSHHHHHHHHHH
T ss_pred ---HHHHHHHcCC--------CH--------------------------HHHhhCEEEE-----ec--CChHHHHHHHHH
Confidence 1111 11000 00 0111111111 11 126788999999
Q ss_pred HHHHc-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHh----hcCcEEEEEeCCHHHHHhhCCEEE
Q 048654 332 ARALF-------VQPTLLLLDEPTNHLDLRA------------VLWLEEYLC----RWKKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 332 ArAL~-------~~P~lLLLDEPT~~LD~~~------------~~~L~~~L~----~~~~TVIivsHdl~~l~~iad~Ii 388 (723)
+++++ .+|++||+||||++||+.. ...+...|. +++.|||+++|.......+++.++
T Consensus 218 ~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~ 297 (349)
T 1pzn_A 218 AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPT 297 (349)
T ss_dssp HHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------
T ss_pred HHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCcc
Confidence 99998 6899999999999999852 234443343 357899999999876654444555
Q ss_pred EEeCCEEE
Q 048654 389 HLHDQKLH 396 (723)
Q Consensus 389 ~L~~G~i~ 396 (723)
++..|+++
T Consensus 298 ~~~~G~~l 305 (349)
T 1pzn_A 298 RPIGGHIL 305 (349)
T ss_dssp ----CCCC
T ss_pred ccCCcceE
Confidence 56666553
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=138.74 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=91.7
Q ss_pred ceeceEE-EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCC
Q 048654 512 KLSDVDV-GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ 590 (723)
Q Consensus 512 ~L~~isl-~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~ 590 (723)
.|+.+.. .|.+|++++|+||||||||||++.|++ . ..+.+ .|+.... .+.. .. +.......
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v--------~~i~~~~--~~~~-~~-~~~~~~~~--- 69 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKV--------AYVDTEG--GFSP-ER-LVQMAETR--- 69 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEE--------EEEESSC--CCCH-HH-HHHHHHTT---
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcE--------EEEECCC--CCCH-HH-HHHHHHhc---
Confidence 4566554 689999999999999999999999999 2 22222 2332111 0110 01 11111111
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHH--HHHHHHHHHHccC-CCeEEeccCCCCCCHHH--------HHHHH
Q 048654 591 EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQ--KARVVFTSISMSK-PHILLLDEPTNHLDMQS--------IDALA 659 (723)
Q Consensus 591 ~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGq--kqRv~lAral~~~-p~lLlLDEPT~~LD~~s--------~~~l~ 659 (723)
+... ..++..+. +..+|+++ ++++..+++++.+ |++||+||||+.+|... ...+.
T Consensus 70 -~~~~----~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~ 135 (220)
T 2cvh_A 70 -GLNP----EEALSRFI---------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQL 135 (220)
T ss_dssp -TCCH----HHHHHHEE---------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHH
T ss_pred -CCCh----HHHhhcEE---------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHH
Confidence 1111 11222221 23445554 5678888899986 99999999999999732 23333
Q ss_pred HHH----HHcCceEEEEecCHH-------------HHHHhcCcCCCcEEEEEECC
Q 048654 660 DAL----DEFTGGVVLVSHDSR-------------LISRVCDDEERSEIWVVENG 697 (723)
Q Consensus 660 ~~L----~~~~~tVIivSHD~~-------------~~~~~~d~~~~drv~vl~~G 697 (723)
+.| ++.+.+||+++|... .+..+|| +|++|+..
T Consensus 136 ~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d-----~vi~l~~~ 185 (220)
T 2cvh_A 136 QVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCK-----DILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSS-----EEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCc-----EEEEEEEe
Confidence 334 444678999999865 5777884 89998754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=147.20 Aligned_cols=75 Identities=29% Similarity=0.464 Sum_probs=67.8
Q ss_pred CCCCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCHHHHHhhCCE
Q 048654 316 RPTKSFSGGWRMRI------SLARALFVQ-PTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHDRDFLNTVCTE 386 (723)
Q Consensus 316 ~~~~~LSGGqrQRv------aLArAL~~~-P~lLLLDEPT~~LD~~~~~~L~~~L~~~~--~TVIivsHdl~~l~~iad~ 386 (723)
+++..|||||+||| ++|++|+.+ |++|||||||++||+..+..|.+.|.++. .+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56689999999988 567999999 99999999999999999999999998763 59999999987 5789999
Q ss_pred EEEEe
Q 048654 387 IIHLH 391 (723)
Q Consensus 387 Ii~L~ 391 (723)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-13 Score=149.28 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=89.2
Q ss_pred ceece-EEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CCCc----ce-EEECCceeEEEEccccccccCccccHHHHH
Q 048654 512 KLSDV-DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL--SPTE----GE-VRRSQKLRIGRYSQHFVDLLTMEETPVSYL 583 (723)
Q Consensus 512 ~L~~i-sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~--~p~~----G~-I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~ 583 (723)
.|+.+ ++.|++|++++|+||||||||||++.|++.. +|+. |. |++.+... +. ... +.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~-----------~~-~~~-i~~i 185 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-----------FR-PER-IREI 185 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC-----------CC-HHH-HHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC-----------CC-HHH-HHHH
Confidence 35554 6789999999999999999999999999998 6766 45 44433210 00 011 1111
Q ss_pred HhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc-------cCCCeEEeccCCCCCCHHH--
Q 048654 584 LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM-------SKPHILLLDEPTNHLDMQS-- 654 (723)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~-------~~p~lLlLDEPT~~LD~~s-- 654 (723)
.... +.... .+++.+-+. .. .-|.+++|++.++++++ .+|++||+||||++||+..
T Consensus 186 ~q~~----~~~~~----~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~ 250 (349)
T 1pzn_A 186 AQNR----GLDPD----EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG 250 (349)
T ss_dssp HHTT----TCCHH----HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCS
T ss_pred HHHc----CCCHH----HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcc
Confidence 1111 11111 222222221 11 12678999999999998 6899999999999999852
Q ss_pred ----------HHHHHHHHHH----cCceEEEEecCHHHHH
Q 048654 655 ----------IDALADALDE----FTGGVVLVSHDSRLIS 680 (723)
Q Consensus 655 ----------~~~l~~~L~~----~~~tVIivSHD~~~~~ 680 (723)
...++..|.. ++.+||+++|+...+.
T Consensus 251 ~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 251 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 3444444443 4679999999876554
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.9e-15 Score=163.88 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=85.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...+.++.+.+............ +.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~------i~ 78 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ------SK 78 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEE------EE
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeee------EE
Confidence 589999999999999999999998 999999999999999999986644432111000000000000 00
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
... +........++.+.. + .... . ........+.+.+. ..++.+
T Consensus 79 ~v~------q~~~~~~~Ltv~Dt~--g-----~~~~-------~---~~~~~~~~i~~~i~-------------~~~~~~ 122 (418)
T 2qag_C 79 VLI------KEGGVQLLLTIVDTP--G-----FGDA-------V---DNSNCWQPVIDYID-------------SKFEDY 122 (418)
T ss_dssp CC------------CEEEEEEECC----------------------------CHHHHHHHH-------------HHHHHH
T ss_pred EEE------ecCCcccceeeeech--h-----hhhh-------c---cchhhHHHHHHHHH-------------HHHHHH
Confidence 000 000000011111000 0 0000 0 00000001111111 124456
Q ss_pred HHHHHHHHHHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHhhcCcEEEEEeCCHH
Q 048654 325 WRMRISLARALFVQPT---LLLLDEPT-NHLDLRAVLWLEEYLCRWKKTLVVVSHDRD 378 (723)
Q Consensus 325 qrQRvaLArAL~~~P~---lLLLDEPT-~~LD~~~~~~L~~~L~~~~~TVIivsHdl~ 378 (723)
++||++|||+++.+|+ ||+||||| ++||+....++.. |.. +.+||+|.|..+
T Consensus 123 l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~-L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 123 LNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR-LHE-KVNIIPLIAKAD 178 (418)
T ss_dssp TTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHH-HTT-TSEEEEEEESTT
T ss_pred HHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHH-Hhc-cCcEEEEEEccc
Confidence 6779999999999999 99999999 6999988666544 443 667788777544
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-13 Score=140.47 Aligned_cols=145 Identities=14% Similarity=0.218 Sum_probs=85.5
Q ss_pred eEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CcceEEECCce-------eEEEEccccccccCccccHHHHHHhh
Q 048654 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP--TEGEVRRSQKL-------RIGRYSQHFVDLLTMEETPVSYLLRL 586 (723)
Q Consensus 516 isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p--~~G~I~~~~~~-------~ig~~~q~~~~~~~~~~~~~~~~~~~ 586 (723)
-.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.++. .++|++|...
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~---------------- 72 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD---------------- 72 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH----------------
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH----------------
Confidence 3446789999999999999999999999999986 67877654431 1333333210
Q ss_pred CCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC
Q 048654 587 HPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT 666 (723)
Q Consensus 587 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~ 666 (723)
.+..+...-.+..... ....+.|-.++. +..++..++++||| ||+.+...+.+.+. -+
T Consensus 73 -----------~f~~~~~~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~ 130 (219)
T 1s96_A 73 -----------EFKEMISRDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HA 130 (219)
T ss_dssp -----------HHHHHHHTTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TC
T ss_pred -----------HHHHHHhcCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CC
Confidence 0000000000000000 000011111222 33445568999999 99999999999887 35
Q ss_pred ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHHH
Q 048654 667 GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713 (723)
Q Consensus 667 ~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~~ 713 (723)
.+||++|||++.+.. |+ +.+| .++++++...+
T Consensus 131 ~tI~i~th~~~~l~~--------Rl--~~rG-----~~~~e~i~~rl 162 (219)
T 1s96_A 131 RSIFILPPSKIELDR--------RL--RGRG-----QDSEEVIAKRM 162 (219)
T ss_dssp EEEEEECSSHHHHHH--------HH--HTTS-----CSCHHHHHHHH
T ss_pred EEEEEECCCHHHHHH--------HH--HHcC-----CCCHHHHHHHH
Confidence 689999999998874 33 4555 35666666544
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-13 Score=150.21 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=82.7
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-cceEEECCceeEEEEccccccccCccccHHHHHHhhCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-EGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ 590 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~ 590 (723)
+|++++ +.+|++++|+||||||||||+++|+|+++|+ +|.|...+.. +.+ ... ..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~---------~~~------------~~ 182 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEY---------VFK------------HK 182 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCS---------CCC------------CS
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hhh---------hhc------------cC
Confidence 566665 7899999999999999999999999999997 8998643321 000 000 00
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEE
Q 048654 591 EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVV 670 (723)
Q Consensus 591 ~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVI 670 (723)
.+.-.+ ..+|+. + ..| +.+|+++|..+|++||+|||| |.+....+.+.. ..+.+||
T Consensus 183 ~~~v~Q-------~~~g~~------~-~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi 238 (372)
T 2ewv_A 183 KSIVNQ-------REVGED------T-KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVF 238 (372)
T ss_dssp SSEEEE-------EEBTTT------B-SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEE
T ss_pred ceEEEe-------eecCCC------H-HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEE
Confidence 000000 013332 1 344 469999999999999999999 887765544443 2346799
Q ss_pred EEecCHHHHHHhc
Q 048654 671 LVSHDSRLISRVC 683 (723)
Q Consensus 671 ivSHD~~~~~~~~ 683 (723)
+++|+.+ +..+|
T Consensus 239 ~t~H~~~-~~~~~ 250 (372)
T 2ewv_A 239 GTLHTNT-AIDTI 250 (372)
T ss_dssp ECCCCCS-HHHHH
T ss_pred EEECcch-HHHHH
Confidence 9999865 44444
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-12 Score=128.30 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=26.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
-|++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999999999984
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-14 Score=153.43 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=99.9
Q ss_pred EEEEEEEE---cCCCcccce---------eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEE
Q 048654 497 QLIEVSFS---YPNREDFKL---------SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564 (723)
Q Consensus 497 ~~~~ls~~---y~~~~~~~L---------~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~ 564 (723)
++++++|+ |+.....+| +++||.|.+|++++|+||||||||||+++|+|+++|++|.|.+.+...+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~- 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF- 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC-
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC-
Confidence 56778887 753222344 99999999999999999999999999999999999999999876531100
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
..+ .... + ...... . +...++++..++..|+.++..+|+.+|+|
T Consensus 216 ~~~-------~~~~-v----~~v~~q------~------------------~~~~~~~~~t~~~~i~~~l~~~pd~~l~~ 259 (361)
T 2gza_A 216 LPD-------HPNH-V----HLFYPS------E------------------AKEEENAPVTAATLLRSCLRMKPTRILLA 259 (361)
T ss_dssp CTT-------CSSE-E----EEECC----------------------------------CCHHHHHHHHTTSCCSEEEES
T ss_pred ccc-------cCCE-E----EEeecC------c------------------cccccccccCHHHHHHHHHhcCCCEEEEc
Confidence 000 0000 0 000000 0 00012345568899999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 645 EPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
||+.. .+.++|..+. .++|.++|+.. +...| +|+..+..+.
T Consensus 260 e~r~~-------~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~-----~Rl~~l~~~~ 303 (361)
T 2gza_A 260 ELRGG-------EAYDFINVAASGHGGSITSCHAGS-CELTF-----ERLALMVLQN 303 (361)
T ss_dssp CCCST-------HHHHHHHHHHTTCCSCEEEEECSS-HHHHH-----HHHHHHHTTS
T ss_pred CchHH-------HHHHHHHHHhcCCCeEEEEECCCC-HHHHH-----HHHHHHHhcc
Confidence 99861 2333444432 47899999976 66666 4777776654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=140.50 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHH------HHHHHHccC-CCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCc
Q 048654 615 TPIAKLSGGQKARV------VFTSISMSK-PHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDD 685 (723)
Q Consensus 615 ~~i~~LSGGqkqRv------~lAral~~~-p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~ 685 (723)
.++..|||||+||| ++|++++.+ |++|||||||+|||+.....+.+.|.++. .+||+||||.+ +..+||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d- 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVAD- 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCS-
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCC-
Confidence 45678999999988 567888999 99999999999999999999999999874 48999999987 467774
Q ss_pred CCCcEEEEEE-CCe
Q 048654 686 EERSEIWVVE-NGT 698 (723)
Q Consensus 686 ~~~drv~vl~-~G~ 698 (723)
++++|+ +|.
T Consensus 354 ----~~~~l~k~~~ 363 (371)
T 3auy_A 354 ----VIINVKKDGN 363 (371)
T ss_dssp ----EEEEEEESSS
T ss_pred ----EEEEEEecCC
Confidence 899997 443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-14 Score=141.16 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=81.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce---------eEEEEccccccccCccccHHHHHHhhCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL---------RIGRYSQHFVDLLTMEETPVSYLLRLHPD 589 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~---------~ig~~~q~~~~~~~~~~~~~~~~~~~~~~ 589 (723)
.|.+|++++|+||||||||||+++|+|. |..|.|.+++.. .++|++|......++.++.... ......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~ 81 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADV-AGRYAK 81 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHH-HHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHH-HHHHhc
Confidence 4789999999999999999999999998 778988876532 1223333211001111110000 000000
Q ss_pred CCCCcHHHHHHHHHHhCCCCCCC-CcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--
Q 048654 590 QEGLSKQEAVRAKLGKFGLPSHN-HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT-- 666 (723)
Q Consensus 590 ~~~~~~~~~~~~~L~~~gl~~~~-~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-- 666 (723)
. +.. ..+..++..+++.... ...++..+|+|++|+++++|++.++|+++ +|+.....+.+.+..+.
T Consensus 82 ~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 82 E-GYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp T-SCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred c-CCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 0 000 0000000111111000 02345679999999999999999999887 68888888888776553
Q ss_pred ceEEEEecC
Q 048654 667 GGVVLVSHD 675 (723)
Q Consensus 667 ~tVIivSHD 675 (723)
..+++.|++
T Consensus 151 ~~~~i~t~~ 159 (191)
T 1zp6_A 151 EHHVLPVSG 159 (191)
T ss_dssp GGGEEECTT
T ss_pred cccEEECCC
Confidence 245555553
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-12 Score=134.04 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=83.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHH--HHHHhhhcCcCCCC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR--EEVASLQNSTSVDG 267 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~ 267 (723)
+|++++|+||||||||||+++|+|++.+. .++|.+.+.++...... .+...+. ..+.++.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~---------~ql~~~~~~~~i~~v~q~~~--- 166 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGG---------TQLSEWGKRLSIPVIQGPEG--- 166 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTT---------HHHHHHHHHHTCCEECCCTT---
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHH---------HHHHHHHHhcCceEEEeCCC---
Confidence 68999999999999999999999987654 56677777665322110 0111111 11122211100
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEe
Q 048654 268 EEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT--LLLLD 345 (723)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~--lLLLD 345 (723)
......+.+.+... ..... -..+++..|.. +.....++...+||++|||||+.+|+ +|.||
T Consensus 167 ---~~p~~~v~~~v~~~--~~~~~--------d~~llDt~G~~----~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD 229 (304)
T 1rj9_A 167 ---TDSAALAYDAVQAM--KARGY--------DLLFVDTAGRL----HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD 229 (304)
T ss_dssp ---CCHHHHHHHHHHHH--HHHTC--------SEEEECCCCCC----TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE
T ss_pred ---CCHHHHHHHHHHHH--HhCCC--------CEEEecCCCCC----CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 01111111111100 00000 00012223332 12223345666999999999999999 67777
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHH
Q 048654 346 EPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRD 378 (723)
Q Consensus 346 EPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~ 378 (723)
|+++.+.. ..+..+-+..+.|+|++||+..
T Consensus 230 -a~t~~~~~--~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 230 -AVTGQNGL--EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp -TTBCTHHH--HHHHHHHHHHCCSEEEEECTTS
T ss_pred -HHHHHHHH--HHHHHHHHHcCCcEEEEECCcc
Confidence 66665533 2333433455889999999843
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-12 Score=126.90 Aligned_cols=145 Identities=19% Similarity=0.226 Sum_probs=77.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc--CCCC-----CcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSP-----TEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~G--l~~p-----~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
.|.+|++++|+||||||||||++.|++ +++| ..|.+++.... .+.. ...... ....
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~-----------~~~~-~~~~~~-~~~~---- 82 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG-----------TFRP-ERLLAV-AERY---- 82 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS-----------CCCH-HHHHHH-HHHT----
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC-----------CcCH-HHHHHH-HHHc----
Confidence 478999999999999999999999999 5665 33444433211 0000 011111 1111
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH-HHHHHHc--cCCCeEEeccCCCCCCHH-------H-----HH
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV-VFTSISM--SKPHILLLDEPTNHLDMQ-------S-----ID 656 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv-~lAral~--~~p~lLlLDEPT~~LD~~-------s-----~~ 656 (723)
+.... .+++.+.+ +..++..+...+ .-+..++ .+|++||+|||++.+|.. . ..
T Consensus 83 g~~~~----~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 83 GLSGS----DVLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp TCCHH----HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred CCCHH----HHhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 11111 12222211 123555554332 2223333 589999999999999975 2 23
Q ss_pred HHHHHHH----HcCceEEEEecCHHHHHH-------------------hcCcCCCcEEEEEECC
Q 048654 657 ALADALD----EFTGGVVLVSHDSRLISR-------------------VCDDEERSEIWVVENG 697 (723)
Q Consensus 657 ~l~~~L~----~~~~tVIivSHD~~~~~~-------------------~~d~~~~drv~vl~~G 697 (723)
.+...|. +.+.+||+++|....... +| |.+++|+.|
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHAS-----TTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTT-----CEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcC-----cEEEEEEEc
Confidence 3333333 346799999997765543 45 589999864
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-14 Score=154.50 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=91.6
Q ss_pred eeceEEEEec--CcEEEEEcCCCCcHHHHHHHHHcCCCCCc----ceEEECCceeEEEEccccccccCcccc-HHHHHHh
Q 048654 513 LSDVDVGIDM--GTRVAIVGPNGAGKSTLLNLLAGDLSPTE----GEVRRSQKLRIGRYSQHFVDLLTMEET-PVSYLLR 585 (723)
Q Consensus 513 L~~isl~i~~--Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~----G~I~~~~~~~ig~~~q~~~~~~~~~~~-~~~~~~~ 585 (723)
...|++.|.+ |++++|+||||||||||+++|+|+++|+. |+|++.+... .... .+...+. .+.+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~----~~~~--~~~~~~~~~I~~~~q 231 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG----GDEQ--AMQYSDYPQMALGHQ 231 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS----SCTT--SSCTTTHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC----CCcc--cCChhHHHHHHHHHH
Confidence 4679999999 99999999999999999999999999998 7765421100 0000 0111110 0111100
Q ss_pred hCCCCCCCcHHHHH-HHHHHhCCC-CCCCCcCCCCCCCHHHHHHHHHHHHHc-cCCCeEEecc---CC------CCCCHH
Q 048654 586 LHPDQEGLSKQEAV-RAKLGKFGL-PSHNHLTPIAKLSGGQKARVVFTSISM-SKPHILLLDE---PT------NHLDMQ 653 (723)
Q Consensus 586 ~~~~~~~~~~~~~~-~~~L~~~gl-~~~~~~~~i~~LSGGqkqRv~lAral~-~~p~lLlLDE---PT------~~LD~~ 653 (723)
..... ....+.+-+ ........+..+|+|++|+..+++++. .+|+++|||| |+ .++|..
T Consensus 232 ---------~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~ 302 (365)
T 1lw7_A 232 ---------RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQK 302 (365)
T ss_dssp ---------HHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CC
T ss_pred ---------HHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHH
Confidence 00000 000011100 000001123356777788888888774 6999999999 65 589999
Q ss_pred HHHHHHHHHHHc----CceEEEEecCHHHHHHhc
Q 048654 654 SIDALADALDEF----TGGVVLVSHDSRLISRVC 683 (723)
Q Consensus 654 s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~ 683 (723)
.+..+.++|.++ +.+||+++|. ....++|
T Consensus 303 ~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~ 335 (365)
T 1lw7_A 303 QRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYN 335 (365)
T ss_dssp SHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHH
Confidence 999998888543 4689999986 3455565
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-14 Score=165.32 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=89.0
Q ss_pred ceEEEeEEEEeCC--eeeeEee----------eEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeec
Q 048654 165 DITIDNFSVAARG--KELLKST----------SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 232 (723)
Q Consensus 165 ~I~l~nls~~y~~--~~vL~~i----------sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~ 232 (723)
.+.++|+++.|+. +++|+.+ +|+++. +||||||||||||||++|+|+..| .+.|.|.+.+.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEE
Confidence 4788999999975 3466555 366765 999999999999999999998544 14555555554431
Q ss_pred CCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc
Q 048654 233 GDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE 312 (723)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~ 312 (723)
........ .++..++++.+... ......+.+.+ ......++...
T Consensus 86 ~~~~~~~~----------~~~~~i~~v~Q~~~------l~~~~tv~e~i-------------------~~~~~~~~~~~- 129 (608)
T 3szr_A 86 LKKLVNED----------KWRGKVSYQDYEIE------ISDASEVEKEI-------------------NKAQNAIAGEG- 129 (608)
T ss_dssp EEECSSSS----------CCEEEESCC---CC------CCCHHHHHTTH-------------------HHHHHHHHCSS-
T ss_pred EecCCccc----------cceeEEeeeccccc------CCCHHHHHHHH-------------------HHHHHHhcCCc-
Confidence 10000000 00000011100000 00111111111 11111111110
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CcEEEEEeCCHHH--
Q 048654 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP------TNHLDLRAVLWLEEYLCRW-----KKTLVVVSHDRDF-- 379 (723)
Q Consensus 313 ~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEP------T~~LD~~~~~~L~~~L~~~-----~~TVIivsHdl~~-- 379 (723)
..+| ++++.++.+....|+++|+||| |++||+..+..+.+++.++ +.++++++|+++.
T Consensus 130 ------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 130 ------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT 200 (608)
T ss_dssp ------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT
T ss_pred ------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc
Confidence 0111 1233444455668999999999 9999999998888888774 3589999999763
Q ss_pred ------HHhh----CCEEEEEeCCE
Q 048654 380 ------LNTV----CTEIIHLHDQK 394 (723)
Q Consensus 380 ------l~~i----ad~Ii~L~~G~ 394 (723)
+..+ +..|+|+.++.
T Consensus 201 ~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 201 TEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp CHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred HHHHHHHHHHhhcCCceEEEecchh
Confidence 3332 35678887643
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-14 Score=156.50 Aligned_cols=72 Identities=7% Similarity=-0.009 Sum_probs=49.6
Q ss_pred CCCChHHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhC
Q 048654 319 KSFSGGWRMRISLARALF-VQPTLLLLDE---PT------NHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~-~~P~lLLLDE---PT------~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~ia 384 (723)
..+|+|++|+..+++++. .+|+++|||| |+ .+||+..+..+.+.|.+ .+.+||+++|. .....+|
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~ 335 (365)
T 1lw7_A 257 FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYN 335 (365)
T ss_dssp HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHH
Confidence 345677788888888874 6999999999 65 58999888888887743 36799999975 4555566
Q ss_pred CEEEEEe
Q 048654 385 TEIIHLH 391 (723)
Q Consensus 385 d~Ii~L~ 391 (723)
+++.+|+
T Consensus 336 ~~i~~i~ 342 (365)
T 1lw7_A 336 QVKAVIE 342 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=137.58 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHc----cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCC
Q 048654 615 TPIAKLSGGQKARVVFTSISM----SKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEE 687 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral~----~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~ 687 (723)
+++..||||||||++||++|+ .+|+||||||||++||+..+..|.++|.++. .+||+|||+..++ ..|
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~---- 403 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKS---- 403 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTC----
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhC----
Confidence 456889999999999999999 5899999999999999999999999999874 4899999997664 567
Q ss_pred CcEEEEEE
Q 048654 688 RSEIWVVE 695 (723)
Q Consensus 688 ~drv~vl~ 695 (723)
|++++|.
T Consensus 404 -d~~~~~~ 410 (430)
T 1w1w_A 404 -DALVGVY 410 (430)
T ss_dssp -SEEEEEE
T ss_pred -CEEEEEE
Confidence 4888886
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-12 Score=143.06 Aligned_cols=131 Identities=19% Similarity=0.185 Sum_probs=86.2
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHh
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS 258 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 258 (723)
.+|++++ +.+|++++|+||||||||||+++|+|++.+. ..+.|.+.+..+...
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~~------------------------ 178 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV------------------------ 178 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCSC------------------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhhh------------------------
Confidence 4566665 7899999999999999999999999976542 145665544322100
Q ss_pred hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 048654 259 LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338 (723)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~ 338 (723)
+.... . .+.. ..+|+. +..| +.+|+++|..+
T Consensus 179 ~~~~~-------~------------------~v~Q-----------~~~g~~-------~~~~------~~~l~~~L~~~ 209 (372)
T 2ewv_A 179 FKHKK-------S------------------IVNQ-----------REVGED-------TKSF------ADALRAALRED 209 (372)
T ss_dssp CCCSS-------S------------------EEEE-----------EEBTTT-------BSCS------HHHHHHHTTSC
T ss_pred hccCc-------e------------------EEEe-----------eecCCC-------HHHH------HHHHHHHhhhC
Confidence 00000 0 0000 012321 2344 56999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 339 P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
|++||+|||+ |+.+...+.+.. ..+.+||+++|+.+ +..+|||++.|
T Consensus 210 pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 210 PDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred cCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 9999999999 887765554443 34779999999966 55667776544
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-12 Score=129.99 Aligned_cols=59 Identities=7% Similarity=0.152 Sum_probs=45.1
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChhhHH
Q 048654 332 ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 332 ArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~~~~ 406 (723)
+..++..++++||| ||+.++..+.+.+. .+.||++++|+++.+.. |+ +..| .++.+++.
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~---Rl--~~rG-----~~~~e~i~ 159 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR---RL--RGRG-----QDSEEVIA 159 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH---HH--HTTS-----CSCHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH---HH--HHcC-----CCCHHHHH
Confidence 34455568999999 99999999999887 36799999999999876 33 5566 24555543
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-14 Score=143.82 Aligned_cols=135 Identities=24% Similarity=0.302 Sum_probs=81.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHH---cCCCCCcceEEECCc---eeEE----EEccccccccCccccHHHHH---HhhCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLA---GDLSPTEGEVRRSQK---LRIG----RYSQHFVDLLTMEETPVSYL---LRLHP 588 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~---Gl~~p~~G~I~~~~~---~~ig----~~~q~~~~~~~~~~~~~~~~---~~~~~ 588 (723)
++++++|+||||||||||+++|+ |+..|+.|.|.+.+. ..++ +++|.. .+.........+ +....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 999999999865431 1112 122221 111111111111 10000
Q ss_pred C----CCCC-cHHHHHHHHHH--hCC------------CCCCCCcCCCCCCCHHHHHHHHHHHHH-ccCCCeEEec----
Q 048654 589 D----QEGL-SKQEAVRAKLG--KFG------------LPSHNHLTPIAKLSGGQKARVVFTSIS-MSKPHILLLD---- 644 (723)
Q Consensus 589 ~----~~~~-~~~~~~~~~L~--~~g------------l~~~~~~~~i~~LSGGqkqRv~lAral-~~~p~lLlLD---- 644 (723)
. ..+. .....+..+.. .++ +. ....+++..||| || +++ +.+|++++||
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~-r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKD-RLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHH-HHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHH-HHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 0 0011 11222333322 122 11 111345678999 66 677 9999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC
Q 048654 645 EPTNHLDMQSIDALADALDEFT 666 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~~ 666 (723)
|||++||..+...+.+.|.++.
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999888774
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-12 Score=140.69 Aligned_cols=168 Identities=17% Similarity=0.096 Sum_probs=99.0
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCCCCcceEEE---CC--ceeEEEEcc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTR--VAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR---SQ--KLRIGRYSQ 567 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~--vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~---~~--~~~ig~~~q 567 (723)
.|++.+ ++.|++. + |++|||+|.+|++ ++|+||||||||||+++|+|+.- .|.... .+ ...++|++|
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q 89 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQ 89 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEE
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEee
Confidence 345566 7888753 4 9999999999999 99999999999999999999842 221111 01 125788888
Q ss_pred ccc--cccCccccHHHHHHhhCCCCCC---Cc-----HHHHHHHHHHhC-CCCCC---CCcCCC-----------CCCCH
Q 048654 568 HFV--DLLTMEETPVSYLLRLHPDQEG---LS-----KQEAVRAKLGKF-GLPSH---NHLTPI-----------AKLSG 622 (723)
Q Consensus 568 ~~~--~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~L~~~-gl~~~---~~~~~i-----------~~LSG 622 (723)
... ..+++.+++. +...... .. ....+..+|..+ ++... ..+.++ ..|+-
T Consensus 90 ~~~l~~~ltv~D~~~-----~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~ 164 (427)
T 2qag_B 90 ESNVRLKLTIVSTVG-----FGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKS 164 (427)
T ss_dssp C--CEEEEEEEEEEC-----CCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CH
T ss_pred cCccccccchhhhhh-----hhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCH
Confidence 532 2233333321 0000000 00 122344556555 44311 011111 14555
Q ss_pred HHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH-c---CceEEEEecCH
Q 048654 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE-F---TGGVVLVSHDS 676 (723)
Q Consensus 623 GqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~-~---~~tVIivSHD~ 676 (723)
.. +.|+++|..+++||++|+||..|.+.....+.+.|++ + +.+|+.+|.|-
T Consensus 165 ~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 165 LD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 55 7999999999999999999999999888888888775 4 34788888753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-12 Score=142.76 Aligned_cols=150 Identities=20% Similarity=0.197 Sum_probs=85.5
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHH-HHhhCCCCC
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSY-LLRLHPDQE 591 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~-~~~~~~~~~ 591 (723)
-++|+|+++.|++++|+|+|||||||||++|+|..+...+.-.......++++.+.....+.+.+++-.. ....+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~--- 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK--- 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC---
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhh---
Confidence 4789999999999999999999999999999998431000000000112333333210001111110000 000000
Q ss_pred CCcHH-----HHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHH---HHHH
Q 048654 592 GLSKQ-----EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA---DALD 663 (723)
Q Consensus 592 ~~~~~-----~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~---~~L~ 663 (723)
+.... +.+..+|..+++. ..++.+||+|++|++.+|++|+..|.||+| |.+|+.....+. +.+.
T Consensus 224 ~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~ 295 (416)
T 1udx_A 224 GLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALA 295 (416)
T ss_dssp CSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHH
Confidence 00010 0112233344553 356788999999999999999999999999 999986553332 2333
Q ss_pred HcCceEEEEe
Q 048654 664 EFTGGVVLVS 673 (723)
Q Consensus 664 ~~~~tVIivS 673 (723)
+.+.+||+||
T Consensus 296 ~~g~~vi~iS 305 (416)
T 1udx_A 296 REGLAVLPVS 305 (416)
T ss_dssp TTTSCEEECC
T ss_pred hcCCeEEEEE
Confidence 3344666666
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-13 Score=143.79 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=84.6
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCC
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL 593 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (723)
++++|+ +|++++|+|+||+||||++..|+|.+.+..|+|.+.+. +.. .....
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~--------d~~------~~~~~------------ 142 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA--------DTQ------RPAAR------------ 142 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC--------CSS------CHHHH------------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC--------Ccc------cHhHH------------
Confidence 456666 89999999999999999999999999988888764321 110 00000
Q ss_pred cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC-CCCCCHHHHHHHHHHHHHcC--ceEE
Q 048654 594 SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP-TNHLDMQSIDALADALDEFT--GGVV 670 (723)
Q Consensus 594 ~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP-T~~LD~~s~~~l~~~L~~~~--~tVI 670 (723)
.....+.+..|+.-.... ...+-.+-+|.+|+++...+++++|+||| +.++|......+..++.... .+++
T Consensus 143 ---~ql~~~~~~~~l~~~~~~---~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~l 216 (295)
T 1ls1_A 143 ---EQLRLLGEKVGVPVLEVM---DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLL 216 (295)
T ss_dssp ---HHHHHHHHHHTCCEEECC---TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred ---HHHHHhcccCCeEEEEcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEE
Confidence 011122334455321100 01233456789999998899999999999 99999988888888777654 2344
Q ss_pred EEe
Q 048654 671 LVS 673 (723)
Q Consensus 671 ivS 673 (723)
++.
T Consensus 217 v~~ 219 (295)
T 1ls1_A 217 VLD 219 (295)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-11 Score=135.95 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=95.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcE--EEEECCCCccHHHHHHHHHhCCCC-------CCCc--EEEEEeeeeecC
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKR--YGLVGPNGMGKSTLLKLLAWRKIP-------VPKN--IDVLLVEQEVVG 233 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~--~~LvG~NGsGKSTLlk~L~G~~~~-------~~~~--~~i~~~~q~~~~ 233 (723)
.|++.+ ++.|++.+ |+++||+|.+|++ ++|||||||||||||++|+|+... .++. -.+.++-|+...
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--C
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcc
Confidence 466777 88999888 9999999999999 999999999999999999997421 0111 012222221100
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-CCCcc
Q 048654 234 DDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL-GFTKE 312 (723)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~ 312 (723)
.. .+...++... +... ........+. .....++..+|... ++...
T Consensus 94 ~~-------------------~ltv~D~~~~------g~~~-~~~~~~~~i~--------~~i~~q~~~~L~e~~~i~r~ 139 (427)
T 2qag_B 94 RL-------------------KLTIVSTVGF------GDQI-NKEDSYKPIV--------EFIDAQFEAYLQEELKIRRV 139 (427)
T ss_dssp EE-------------------EEEEEEEECC------CC-C-CHHHHSHHHH--------HHHHHHHHHHHHHC--CCCC
T ss_pred cc-------------------ccchhhhhhh------hhcc-ccchhhhHHH--------HHHHHHHHHHHHHHHhhhhh
Confidence 00 0000011000 0000 0000000000 11234455556554 43210
Q ss_pred ---ccCCC-----------CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEe
Q 048654 313 ---MQGRP-----------TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVS 374 (723)
Q Consensus 313 ---~~~~~-----------~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivs 374 (723)
..+.. ...|+-.. +.|+++|..+++||++|+||..|.+.....+.+.+++ .+.+|+.+|
T Consensus 140 l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 140 LHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp CCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred hcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence 01111 12455555 8999999999999999999999999888877777764 367888888
Q ss_pred CC
Q 048654 375 HD 376 (723)
Q Consensus 375 Hd 376 (723)
.|
T Consensus 217 ~~ 218 (427)
T 2qag_B 217 TD 218 (427)
T ss_dssp --
T ss_pred CC
Confidence 65
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-11 Score=116.80 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=35.5
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CcEEEEEeCCHH
Q 048654 337 VQPTLLLLDEPTN-HLDLRAVLWLEEYLCRW---KKTLVVVSHDRD 378 (723)
Q Consensus 337 ~~P~lLLLDEPT~-~LD~~~~~~L~~~L~~~---~~TVIivsHdl~ 378 (723)
.+|+|||||||++ ++|+..+..|.++|... +.++|++||...
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 3899999999985 99999999888888643 679999999753
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=128.09 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=40.9
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHH----hhcCcEEEEEeCCH-------------------HHHH
Q 048654 337 VQPTLLLLDEPTNHLDLRAV------------LWLEEYL----CRWKKTLVVVSHDR-------------------DFLN 381 (723)
Q Consensus 337 ~~P~lLLLDEPT~~LD~~~~------------~~L~~~L----~~~~~TVIivsHdl-------------------~~l~ 381 (723)
.+|++||+||||+.+|+... ..+...| ++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996421 3333433 34578999999983 3357
Q ss_pred hhCCEEEEEeCC
Q 048654 382 TVCTEIIHLHDQ 393 (723)
Q Consensus 382 ~iad~Ii~L~~G 393 (723)
++||.+++|+.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 789999999865
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.4e-14 Score=137.76 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----eEEEEccccccccCccccHHHHHHhhCCCCCCCcHHH
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQE 597 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (723)
|++++|+||||||||||+++|++ |..|.+++++.. ..++++|..... ........+ ..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l------------~~ 64 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDE--LLALTWKNI------------TD 64 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHH--HHHHHHHHH------------HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchh--HHHHHHHHH------------HH
Confidence 78999999999999999999997 667888765431 122232221000 000000000 00
Q ss_pred HHHHHHHhCCC----CCC---CCcCCCCCC--CHHHHHHHHHHH------HHccCCCeEEeccCCCCCCHHHHHHHHHHH
Q 048654 598 AVRAKLGKFGL----PSH---NHLTPIAKL--SGGQKARVVFTS------ISMSKPHILLLDEPTNHLDMQSIDALADAL 662 (723)
Q Consensus 598 ~~~~~L~~~gl----~~~---~~~~~i~~L--SGGqkqRv~lAr------al~~~p~lLlLDEPT~~LD~~s~~~l~~~L 662 (723)
.+..++. .+. ... .....+..+ |+|++|++.++. +++.+|....+|+ +||+..... .+.+
T Consensus 65 ~~~~~~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~ 139 (189)
T 2bdt_A 65 LTVNFLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEF 139 (189)
T ss_dssp HHHHHHH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHH
T ss_pred HHHHHHh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHH
Confidence 0111111 110 000 000111234 888888888888 8888898888884 899988877 7777
Q ss_pred HHcC---ceEEEEecC-HHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 663 DEFT---GGVVLVSHD-SRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 663 ~~~~---~tVIivSHD-~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
..+. .+||.+||. ++.+.++|+ +|+ ++|+++ +.|+++.+
T Consensus 140 ~~~~~~~~~ii~tsh~~~~~~e~~~~-----~i~--~~g~~~-~~~~~~~~ 182 (189)
T 2bdt_A 140 ESKGIDERYFYNTSHLQPTNLNDIVK-----NLK--TNPRFI-FCMAGDPL 182 (189)
T ss_dssp HHTTCCTTSEEECSSSCGGGHHHHHH-----HHH--HCGGGS-CC------
T ss_pred hhcCCCccEEEeCCCCChhhHHHHHH-----HHh--hCCcEE-EeecCCch
Confidence 7653 479999998 999999995 777 999996 56777654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-11 Score=119.43 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=71.3
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHH
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQ 596 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (723)
+|.+.+|+.++|+||||+|||||+++|++.+.|..|... .|+. ..+. ..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~~--------~~~~-~~--------------- 80 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFFD--------TKDL-IF--------------- 80 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEEE--------HHHH-HH---------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEEE--------HHHH-HH---------------
Confidence 456778999999999999999999999999876666311 1110 0000 00
Q ss_pred HHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC-CCCHHHHHHHHHHHHHc---CceEEEE
Q 048654 597 EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN-HLDMQSIDALADALDEF---TGGVVLV 672 (723)
Q Consensus 597 ~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~-~LD~~s~~~l~~~L~~~---~~tVIiv 672 (723)
.+........ .. -....+.+|++||||||++ ++|+.....+.++|... +.+||++
T Consensus 81 -~~~~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 81 -RLKHLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp -HHHHHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -HHHHHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 0111111000 00 0112234899999999985 99999999998888765 4689999
Q ss_pred ecCH
Q 048654 673 SHDS 676 (723)
Q Consensus 673 SHD~ 676 (723)
||..
T Consensus 140 sn~~ 143 (180)
T 3ec2_A 140 TNYS 143 (180)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9975
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.5e-14 Score=150.57 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=102.1
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------- 559 (723)
+|+++++++.|+. ..+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.
T Consensus 29 ~ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 29 LAESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HHTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HHeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 3455677777853 34799999999999999999999999999999999999999999975431
Q ss_pred eeEEEEccccccccC-cc--c-------cHHHH------------------------HHhhCC-------CCCCCcHHH-
Q 048654 560 LRIGRYSQHFVDLLT-ME--E-------TPVSY------------------------LLRLHP-------DQEGLSKQE- 597 (723)
Q Consensus 560 ~~ig~~~q~~~~~~~-~~--~-------~~~~~------------------------~~~~~~-------~~~~~~~~~- 597 (723)
.++++++|....... .. . ..... ...... +.......+
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 134555554211100 00 0 00000 000000 000000000
Q ss_pred ---HHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc------CCCeEEeccCCCCCCHHHHHHHHHHHHHc
Q 048654 598 ---AVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS------KPHILLLDEPTNHLDMQSIDALADALDEF 665 (723)
Q Consensus 598 ---~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~------~p~lLlLDEPT~~LD~~s~~~l~~~L~~~ 665 (723)
.+.+....+.+. ..+..+...+|+|++|++..+++++. .|++++ |+++|......|.+.|.++
T Consensus 187 i~~~i~~~~~ivvlN-K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 187 IKKGIFELADMIAVN-KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CCTTHHHHCSEEEEE-CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEE-chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 011222222221 11111224689999999999999887 688876 9999999999999988775
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.2e-13 Score=127.36 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=50.8
Q ss_pred EEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc
Q 048654 499 IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK 559 (723)
Q Consensus 499 ~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~ 559 (723)
.++++.|++ ..++++|||+|.+|++++|+||||||||||+++|+|++ |++|+|.+.+.
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~ 68 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTY 68 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTT
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCE
Confidence 456777764 35899999999999999999999999999999999999 99999987653
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-12 Score=128.85 Aligned_cols=43 Identities=19% Similarity=0.019 Sum_probs=36.4
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW 366 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~ 366 (723)
.++..+|+|++||++++|++..+|+++ +|+.....+.+.+..+
T Consensus 105 ~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 105 RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 455689999999999999999999987 6888888888877654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-11 Score=113.71 Aligned_cols=91 Identities=21% Similarity=0.245 Sum_probs=64.1
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
+|+++ +|+.++|+||||+|||||+++|++.+.+ .|. .+.|+... + + . .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~--~-~-------------~-~-- 77 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAA--S-M-------------P-L-- 77 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETT--T-S-------------C-C--
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHH--H-h-------------h-H--
Confidence 45665 8999999999999999999999998876 351 12222211 0 0 0 0
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---Cce
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGG 668 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~t 668 (723)
. +++.+|+|||||||+. ++....+.+.++|+.. +.+
T Consensus 78 ---~-------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~ 116 (149)
T 2kjq_A 78 ---T-------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKG 116 (149)
T ss_dssp ---C-------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCC
T ss_pred ---H-------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCc
Confidence 0 2356899999999998 6655578888887654 356
Q ss_pred -EEEEecC
Q 048654 669 -VVLVSHD 675 (723)
Q Consensus 669 -VIivSHD 675 (723)
||++||.
T Consensus 117 ~iiits~~ 124 (149)
T 2kjq_A 117 FLLLGSEY 124 (149)
T ss_dssp EEEEEESS
T ss_pred EEEEECCC
Confidence 7888874
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=125.73 Aligned_cols=127 Identities=16% Similarity=0.235 Sum_probs=72.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCcceEEECCce---------eEEEEccccccccCccccHHHHHHhhCCCCCCCc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG-DLSPTEGEVRRSQKL---------RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS 594 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G-l~~p~~G~I~~~~~~---------~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (723)
.+.|+||||+|||||+++|+| ++.|..|.|.+++.. .+++++|...-.+. ....+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 104 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEIT-------------PSDMGNN 104 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEEC-------------CC----C
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEec-------------HhhcCCc
Confidence 389999999999999999999 889999998765421 23333332110000 0000000
Q ss_pred HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEE
Q 048654 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLV 672 (723)
Q Consensus 595 ~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIiv 672 (723)
....+++.+..+....... ..+ .||| +..+|+|||||||++ ||..+...|.+.|.+.. .++|++
T Consensus 105 ~~~~~~~~i~~~~~~~~~~-~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~ 170 (354)
T 1sxj_E 105 DRIVIQELLKEVAQMEQVD-FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMV 170 (354)
T ss_dssp CHHHHHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred chHHHHHHHHHHHHhcccc-ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 1112444444432211111 111 5677 788999999999999 99999999999999874 579999
Q ss_pred ecCHHH
Q 048654 673 SHDSRL 678 (723)
Q Consensus 673 SHD~~~ 678 (723)
||+...
T Consensus 171 t~~~~~ 176 (354)
T 1sxj_E 171 CDSMSP 176 (354)
T ss_dssp ESCSCS
T ss_pred eCCHHH
Confidence 999754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-11 Score=129.97 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=72.3
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCcceEEEC-C-------ceeEEEEccccccccCccccHHHHH
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-PTEGEVRRS-Q-------KLRIGRYSQHFVDLLTMEETPVSYL 583 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-p~~G~I~~~-~-------~~~ig~~~q~~~~~~~~~~~~~~~~ 583 (723)
++++++. .+|++++|+||||||||||+|+|+|++. |..|.|... + ...+++++|... +..++- +
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~----l~dtpg--v 278 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD----VIDSPG--V 278 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE----EEECHH--H
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE----ecCccc--H
Confidence 5666664 4799999999999999999999999999 999999764 3 235778877531 111111 0
Q ss_pred HhhCCCCCCCcH---HHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 584 LRLHPDQEGLSK---QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 584 ~~~~~~~~~~~~---~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral 634 (723)
..+ . ..+... ...+.++++.+|+.... +.++.+|| ||+||++||+++
T Consensus 279 ~e~-~-l~~l~~~e~~~~~~e~l~~~gl~~f~-~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REF-G-LWHLEPEQITQGFVEFHDYLGHCKYR-DCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTC-C-CCCCCHHHHHHTSGGGGGGTTCSSST-TCCSSSCT-TCHHHHHHHHTS
T ss_pred HHh-h-hcCCCHHHHHHHHHHHHHHcCCchhc-CCCcccCC-HHHHHHHHHhcC
Confidence 111 0 111112 22355678888987554 45668999 999999999875
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-12 Score=141.50 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=96.4
Q ss_pred EEEeEEEE---eCC--eeee---------EeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeec
Q 048654 167 TIDNFSVA---ARG--KELL---------KSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 232 (723)
Q Consensus 167 ~l~nls~~---y~~--~~vL---------~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~ 232 (723)
++++++|+ |+. ..+| +++||.|++|++++|+||||||||||+++|+|++.+. .+.|.+.+....
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCcccc
Confidence 56677776 653 3455 9999999999999999999999999999999987654 445544321100
Q ss_pred CCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc
Q 048654 233 GDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE 312 (723)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~ 312 (723)
.... ..+ . +++-
T Consensus 215 ~~~~----------------------~~~------------~--------------------------------v~~v-- 226 (361)
T 2gza_A 215 FLPD----------------------HPN------------H--------------------------------VHLF-- 226 (361)
T ss_dssp CCTT----------------------CSS------------E--------------------------------EEEE--
T ss_pred Cccc----------------------cCC------------E--------------------------------EEEe--
Confidence 0000 000 0 0000
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 313 ~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
...+....++++..++..|+.+|..+|+.+|+|||... .... +.+.+..-..|+|.++|..+ +...++|++.|..
T Consensus 227 ~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 227 YPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGG---EAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVL 301 (361)
T ss_dssp CC----------CCHHHHHHHHTTSCCSEEEESCCCST---HHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHT
T ss_pred ecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHh
Confidence 00000001245557899999999999999999999862 2222 23333332347889999966 6778999998887
Q ss_pred CE
Q 048654 393 QK 394 (723)
Q Consensus 393 G~ 394 (723)
+.
T Consensus 302 ~~ 303 (361)
T 2gza_A 302 QN 303 (361)
T ss_dssp TS
T ss_pred cc
Confidence 63
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=124.85 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=29.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHH--HHcCCCCCcc
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNL--LAGDLSPTEG 552 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~--L~Gl~~p~~G 552 (723)
-|.+|++++|+||||||||||++. +.++.+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 578999999999999999999994 4677777554
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-14 Score=139.31 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCC-HHHHHhhCCEEEEEe
Q 048654 322 SGGWRMRISLAR------ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHD-RDFLNTVCTEIIHLH 391 (723)
Q Consensus 322 SGGqrQRvaLAr------AL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHd-l~~l~~iad~Ii~L~ 391 (723)
|+|++|++.++. +|+.+|....+|+ +||+..+.. ++.+..+ +.+||.+||. ++.+..+||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 788888888888 8999999888884 899987777 6666554 4689999999 999999999999 9
Q ss_pred CCEEEEecCChhh
Q 048654 392 DQKLHFYRGNFDD 404 (723)
Q Consensus 392 ~G~i~~~~g~~~~ 404 (723)
+|+++ +.|+.+-
T Consensus 170 ~g~~~-~~~~~~~ 181 (189)
T 2bdt_A 170 NPRFI-FCMAGDP 181 (189)
T ss_dssp CGGGS-CC-----
T ss_pred CCcEE-EeecCCc
Confidence 99985 4466543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7e-12 Score=140.05 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=41.6
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS 557 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~ 557 (723)
+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 57899999999999999999999999999999999999999874
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-12 Score=123.89 Aligned_cols=53 Identities=17% Similarity=-0.044 Sum_probs=46.5
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCc
Q 048654 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221 (723)
Q Consensus 168 l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~ 221 (723)
..++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+. |..|.
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 346677788888999999999999999999999999999999999987 65443
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-12 Score=128.32 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=39.8
Q ss_pred cCCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHhhc
Q 048654 314 QGRPTKSFSGGWRMRISLARAL-FVQPTLLLLD----EPTNHLDLRAVLWLEEYLCRW 366 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL-~~~P~lLLLD----EPT~~LD~~~~~~L~~~L~~~ 366 (723)
.++++..||| |+ +|| +.+|++++|| |||++||+.+...+.+.|..+
T Consensus 146 ~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 146 SRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp HTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred HcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 3577889999 66 778 9999999999 999999999888888888765
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-13 Score=145.99 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHh
Q 048654 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRV 682 (723)
Q Consensus 619 ~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~ 682 (723)
+||+||+||+..+++++.+|+++ ||| ..+.+.|++++ .+||++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 79999999999999999999988 999 56666666654 5899999954434333
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-11 Score=128.52 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=91.6
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------------eEEEEccccccccCccccHHHH
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------------RIGRYSQHFVDLLTMEETPVSY 582 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------------~ig~~~q~~~~~~~~~~~~~~~ 582 (723)
..+|++++|+||||||||||+++|+|+++|++|+|.+.+.. .+.+++|... +....+....
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHHH
Confidence 46899999999999999999999999999999999865421 1223333211 0000000000
Q ss_pred HH---hhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHH
Q 048654 583 LL---RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA 659 (723)
Q Consensus 583 ~~---~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~ 659 (723)
+. ....+. -+++..|+.+.. ...+.+| -.+++++..++.+++||.+|. .|.. ..+.
T Consensus 204 l~~~~~~~~d~----------vliDtaG~~~~~-~~l~~eL-------~~i~ral~~de~llvLDa~t~-~~~~--~~~~ 262 (328)
T 3e70_C 204 IQHAKARGIDV----------VLIDTAGRSETN-RNLMDEM-------KKIARVTKPNLVIFVGDALAG-NAIV--EQAR 262 (328)
T ss_dssp HHHHHHHTCSE----------EEEEECCSCCTT-TCHHHHH-------HHHHHHHCCSEEEEEEEGGGT-THHH--HHHH
T ss_pred HHHHHhccchh----------hHHhhccchhHH-HHHHHHH-------HHHHHHhcCCCCEEEEecHHH-HHHH--HHHH
Confidence 00 000000 001122322111 1122233 348999999999999996664 4332 2222
Q ss_pred HHHHHcCceEEEEecCHH---------HHHHhcCcCCCcEEEEEECCeEEe--cCCCHHHHHHHHH
Q 048654 660 DALDEFTGGVVLVSHDSR---------LISRVCDDEERSEIWVVENGTVSR--FPGTFEEYKEDLQ 714 (723)
Q Consensus 660 ~~L~~~~~tVIivSHD~~---------~~~~~~d~~~~drv~vl~~G~i~~--~~g~~~~~~~~~~ 714 (723)
.+-...+.++|++||.-. .+.... -.|.++..|+.+. ..-+++.+...++
T Consensus 263 ~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~-----~pi~~i~~Ge~v~dl~~~~~~~~~~~ll 323 (328)
T 3e70_C 263 QFNEAVKIDGIILTKLDADARGGAALSISYVID-----APILFVGVGQGYDDLRPFEKEWFLERIF 323 (328)
T ss_dssp HHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHT-----CCEEEEECSSSTTCEEECCHHHHHHHHT
T ss_pred HHHHhcCCCEEEEeCcCCccchhHHHHHHHHHC-----CCEEEEeCCCCccccccCCHHHHHHHHh
Confidence 222345678999999542 233332 3688898887531 1124555555443
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.4e-13 Score=149.31 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=96.6
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce--------eEEEEccccc--c---------
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL--------RIGRYSQHFV--D--------- 571 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~--------~ig~~~q~~~--~--------- 571 (723)
.++++++|.|..|+.++|+|||||||||||++|+|+++|+.|.|.+.+.. .+++..+... .
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46788999999999999999999999999999999999999999875532 1233332111 0
Q ss_pred -------------ccCccccHHHHHHhhCCCCCCCc--HHHHHHHHHHhC-----CCCCCCC---c---CCCCCCCHHHH
Q 048654 572 -------------LLTMEETPVSYLLRLHPDQEGLS--KQEAVRAKLGKF-----GLPSHNH---L---TPIAKLSGGQK 625 (723)
Q Consensus 572 -------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~~-----gl~~~~~---~---~~i~~LSGGqk 625 (723)
.+...+. ...+........+.. ....+..++.++ ++..... . .....+|+||+
T Consensus 328 ~~LR~~PD~iivgEir~~E~-~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREA-QTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHH-HHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHHH-HHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 0011110 111111100000000 000122233332 2221100 0 12245899999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEE--EecCHHHHHHhcC
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVL--VSHDSRLISRVCD 684 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIi--vSHD~~~~~~~~d 684 (723)
||++++ ++ | |+|||+.+...+.+.|.++ +.++|+ +||+++.+...|+
T Consensus 407 ~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 407 LRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred eEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 998764 12 7 9999998777666666655 247765 8999999998885
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-12 Score=125.32 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---cceEEECCcee---------------EE----EEccccccccCccccHHH
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSPT---EGEVRRSQKLR---------------IG----RYSQHFVDLLTMEETPVS 581 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p~---~G~I~~~~~~~---------------ig----~~~q~~~~~~~~~~~~~~ 581 (723)
++++|+|+||||||||+++|+|+++|+ .|.|.+++... ++ +++|+.... +.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~----- 75 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IR----- 75 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EE-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Ee-----
Confidence 589999999999999999999999998 89998765321 11 222211000 00
Q ss_pred HHHhhCCCCCCCcHHH--HHHHHHHh-C-CCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE-------EeccCCC--
Q 048654 582 YLLRLHPDQEGLSKQE--AVRAKLGK-F-GLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL-------LLDEPTN-- 648 (723)
Q Consensus 582 ~~~~~~~~~~~~~~~~--~~~~~L~~-~-gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL-------lLDEPT~-- 648 (723)
. + .... .+.+++.. + |+.. .-...|||||+||++|||+++.+|+|. +-|.|..
T Consensus 76 -------~--~-~~~~~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~ 141 (171)
T 2f1r_A 76 -------R--V-SEEEGNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGH 141 (171)
T ss_dssp -------E--C-CHHHHTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSS
T ss_pred -------c--C-ChhhhhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccC
Confidence 0 0 0111 24445554 4 3321 122359999999999999999999873 2355532
Q ss_pred -CCCHHHHHHHHHHHHH
Q 048654 649 -HLDMQSIDALADALDE 664 (723)
Q Consensus 649 -~LD~~s~~~l~~~L~~ 664 (723)
-+|......+.++|.+
T Consensus 142 ~~f~~~~~~~~a~~i~~ 158 (171)
T 2f1r_A 142 KWFRRDEVERIAEFILS 158 (171)
T ss_dssp CEECTTCHHHHHHHHHH
T ss_pred cccCcccHHHHHHHHHH
Confidence 2344456666666644
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.2e-13 Score=148.45 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=86.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce--------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-------------- 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-------------- 560 (723)
++.++++++.|+. ..+|+++ + ..+|++++|+|||||||||||++|+|+++|++|+|...+..
T Consensus 143 ~~~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 143 RLDLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCCGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCCHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 4566777776643 2467888 5 38899999999999999999999999999999999764321
Q ss_pred -eEEEEc---------cccccccCcc-----ccHHHHHHh-hCCC-----CCCCcHHHHHHHHHHhCCCCCCCCcCCCCC
Q 048654 561 -RIGRYS---------QHFVDLLTME-----ETPVSYLLR-LHPD-----QEGLSKQEAVRAKLGKFGLPSHNHLTPIAK 619 (723)
Q Consensus 561 -~ig~~~---------q~~~~~~~~~-----~~~~~~~~~-~~~~-----~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~ 619 (723)
.+++.+ |.+. .+.+. ++....+.. .... ...... ..+...|..+|+.... .+..
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd-~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~-~~~i~rL~~lgl~~~~---~~~~ 293 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPD-VVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA-VGAVTRLRDMGIEPFL---ISSS 293 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCS-EEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS-HHHHHHHHHHTCCHHH---HHHH
T ss_pred cccCcCHHHHHHHHhccCCC-eEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH-HHHHHHHHHcCCcHHH---HHHH
Confidence 011211 2211 11011 121111111 1000 000011 2233457778886432 4578
Q ss_pred CCHHHHHHHHHHHHHccCCCeEEe
Q 048654 620 LSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 620 LSGGqkqRv~lAral~~~p~lLlL 643 (723)
|||||+|| |||+|+.+|+++.-
T Consensus 294 LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 294 LLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHH--hhhhhcCCCCccCC
Confidence 99999999 99999999998763
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-12 Score=127.98 Aligned_cols=141 Identities=18% Similarity=0.096 Sum_probs=80.3
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhh-CCCCCCCcHHHH
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRL-HPDQEGLSKQEA 598 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 598 (723)
..+|++++|+||||||||||+++|+|+++|. | ..+++++++-.. +........... ............
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGFH---LDNRLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGGB---CCHHHHGGGTCGGGTTSGGGBCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCCc---CCHHHHHHhcccccCCCCchhhHHH
Confidence 4789999999999999999999999999875 3 123444432111 000000000000 000000001122
Q ss_pred HHHHHHhCCCCC----CCCcCCCCCCCHHHHHHHHHH-HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEe
Q 048654 599 VRAKLGKFGLPS----HNHLTPIAKLSGGQKARVVFT-SISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVS 673 (723)
Q Consensus 599 ~~~~L~~~gl~~----~~~~~~i~~LSGGqkqRv~lA-ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivS 673 (723)
+...+..+.... ....+. ..+|+||+|+++++ ++++.++.++++|||.. ..|..+...+|+++
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd 155 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLE 155 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEEC
T ss_pred HHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEe
Confidence 233333321110 011122 35799999999998 88888888888888841 11334445789999
Q ss_pred cCHHH-HHHhc
Q 048654 674 HDSRL-ISRVC 683 (723)
Q Consensus 674 HD~~~-~~~~~ 683 (723)
++.+. +.+++
T Consensus 156 ~~~~~~~~R~~ 166 (208)
T 3c8u_A 156 VPMADLEARLV 166 (208)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99887 55555
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=107.90 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcE-EEEEeCC
Q 048654 334 ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKT-LVVVSHD 376 (723)
Q Consensus 334 AL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~T-VIivsHd 376 (723)
+++.+|+|||||||++ ++...+..|.+++..+ +.+ ||++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3467899999999998 6655577777777643 567 8888884
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-12 Score=138.26 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhh
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTV 383 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~i 383 (723)
+||+||+||+..+++|+.+|+++ ||| ..+.+.|+++ +.|||++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 69999999999999999999988 999 4555555544 57999999965444443
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-11 Score=133.42 Aligned_cols=57 Identities=26% Similarity=0.260 Sum_probs=43.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH---HHHHHhhcCcEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLW---LEEYLCRWKKTLVVVSH 375 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~---L~~~L~~~~~TVIivsH 375 (723)
..++.+||+|++|++++|++|+..|.||+| |.||+..... +.+.+...+.++|+||.
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 356778999999999999999999999999 9999865432 33333334556666663
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-10 Score=117.58 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=73.2
Q ss_pred eEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcH
Q 048654 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK 595 (723)
Q Consensus 516 isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (723)
++|...+|++++|+|+|||||||++..|++.+.+..|+|.+... +.. .. . .
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~--------D~~------r~-~--------------a 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA--------DTF------RA-A--------------A 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE--------CTT------CH-H--------------H
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc--------ccc------cH-H--------------H
Confidence 45556789999999999999999999999999988887764321 110 00 0 1
Q ss_pred HHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH---HHHHHHccCCCeEEeccCCC
Q 048654 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV---VFTSISMSKPHILLLDEPTN 648 (723)
Q Consensus 596 ~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv---~lAral~~~p~lLlLDEPT~ 648 (723)
.+.+..+++.++++. +..+|||+.+++ +|++++..+|+++|+|+|..
T Consensus 148 ~eqL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 IEQLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 122445566667642 236789999999 89999999999999999975
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-11 Score=126.07 Aligned_cols=125 Identities=14% Similarity=-0.005 Sum_probs=74.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhh------CCC--CCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRL------HPD--QEG 592 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~------~~~--~~~ 592 (723)
..+.+|+|+|++|||||||+++|.+++.+. |. ....+.+++|+.+. + .......+... ... ...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f~-~--~~~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDFY-L--THEDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGGB-C--CHHHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEecccccc-C--ChHHHHHHhccccccchhhhccCcc
Confidence 357899999999999999999999998763 20 01123343665321 1 11111111110 000 011
Q ss_pred CcHHHHHHHHHHhCCCCC-----CC--CcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHH
Q 048654 593 LSKQEAVRAKLGKFGLPS-----HN--HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653 (723)
Q Consensus 593 ~~~~~~~~~~L~~~gl~~-----~~--~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~ 653 (723)
..+...+.+.+..+.-.. .. ....-..+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 123445566666664320 00 01112579999999999974333389999999999999985
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.1e-10 Score=119.97 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=90.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHH--hhhcCcCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA--SLQNSTSV 265 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 265 (723)
.++|++++|+||||||||||+++|+|++.+ ..++|.+.+.++..... . .+...+...++ ++.+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a--~-------eql~~~~~~~gv~~v~q~~-- 192 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGA--I-------EQLEEHAKRIGVKVIKHSY-- 192 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTH--H-------HHHHHHHHHTTCEEECCCT--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccch--H-------HHHHHHHHHcCceEEeccc--
Confidence 368999999999999999999999998654 44567777766543221 1 11111222222 111110
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048654 266 DGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345 (723)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLD 345 (723)
.......+.+.+..... .... .-+++..|..+ .... =..+.-.|++++..++.+++||
T Consensus 193 ----~~~p~~~v~e~l~~~~~--~~~d--------~vliDtaG~~~-~~~~-------l~~eL~~i~ral~~de~llvLD 250 (328)
T 3e70_C 193 ----GADPAAVAYDAIQHAKA--RGID--------VVLIDTAGRSE-TNRN-------LMDEMKKIARVTKPNLVIFVGD 250 (328)
T ss_dssp ----TCCHHHHHHHHHHHHHH--HTCS--------EEEEEECCSCC-TTTC-------HHHHHHHHHHHHCCSEEEEEEE
T ss_pred ----cCCHHHHHHHHHHHHHh--ccch--------hhHHhhccchh-HHHH-------HHHHHHHHHHHhcCCCCEEEEe
Confidence 00111111111110000 0000 00112223211 1111 2333445999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCH---------HHHHhhCCEEEEEeCCEE
Q 048654 346 EPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDR---------DFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 346 EPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl---------~~l~~iad~Ii~L~~G~i 395 (723)
.+|. .|. ...+..+-+..+.|+|++||.- +.+....-.|.++..|+.
T Consensus 251 a~t~-~~~--~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 251 ALAG-NAI--VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp GGGT-THH--HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred cHHH-HHH--HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 6665 333 2333333345688999999943 344455567888888764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-11 Score=135.90 Aligned_cols=156 Identities=13% Similarity=0.176 Sum_probs=99.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc------------CCCCCcceEEECCce------------eE---EEEcccc--
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAG------------DLSPTEGEVRRSQKL------------RI---GRYSQHF-- 569 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~G------------l~~p~~G~I~~~~~~------------~i---g~~~q~~-- 569 (723)
++.+|.+++|+|+||+|||||+++|+| .+.|+.|.|.+.+.. .+ .++.+..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567899999876521 11 1222111
Q ss_pred ccccCccccHH-HHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC--CeEEeccC
Q 048654 570 VDLLTMEETPV-SYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP--HILLLDEP 646 (723)
Q Consensus 570 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p--~lLlLDEP 646 (723)
....+..+... .++..... +..++.-++... ...+..+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~----------~d~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA----------VDAIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT----------CSEEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH----------HHHHHHHHhccc---cceeeeecccc------------Ccchhhhhchhh
Confidence 01111111100 00000000 000111112211 23455577753 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHc-C---ceEEEEecCHHHHHHhcCcCCCcEEE-EEECC-eEEecCCCHH
Q 048654 647 TNHLDMQSIDALADALDEF-T---GGVVLVSHDSRLISRVCDDEERSEIW-VVENG-TVSRFPGTFE 707 (723)
Q Consensus 647 T~~LD~~s~~~l~~~L~~~-~---~tVIivSHD~~~~~~~~d~~~~drv~-vl~~G-~i~~~~g~~~ 707 (723)
+.++|+.......+.+... . .|| ++|+...+..+|+ ++. +|++| +++. .|+..
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~-----~i~~~L~~G~~~~~-~~~~~ 209 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIE-----KVYQYLTETKQPIR-KGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHH-----HHHHHHHTTCSCGG-GSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHH-----HHHHHhccCCceee-cCCCC
Confidence 9999999999988888877 3 344 3999999999994 888 89999 8863 35543
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=114.50 Aligned_cols=131 Identities=21% Similarity=0.125 Sum_probs=87.3
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++...+ ..+++.+++.++.. ....
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~---~~~~----- 142 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQR---PAAR----- 142 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSC---HHHH-----
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCccc---HhHH-----
Confidence 45567777786543 788888 9999999999999999999999987543 23456666544321 1000
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.+ + ..+.+..|+.-.... ...+-.+
T Consensus 143 -~q--------------------------------l-------------------~~~~~~~~l~~~~~~---~~~~p~~ 167 (295)
T 1ls1_A 143 -EQ--------------------------------L-------------------RLLGEKVGVPVLEVM---DGESPES 167 (295)
T ss_dssp -HH--------------------------------H-------------------HHHHHHHTCCEEECC---TTCCHHH
T ss_pred -HH--------------------------------H-------------------HHhcccCCeEEEEcC---CCCCHHH
Confidence 00 0 001122344311110 0123345
Q ss_pred HHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHhh
Q 048654 326 RMRISLARALFVQPTLLLLDEP-TNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEP-T~~LD~~~~~~L~~~L~~ 365 (723)
.+|.+|++++..+++++|+||| +.++|......+..++..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 6789999999899999999999 999999888888776654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.8e-11 Score=125.92 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=32.8
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~ 354 (723)
.+...+||||+||+.+|++...+|+||||||||++||+.
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 445789999999999984333399999999999999985
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-09 Score=112.51 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=85.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHH
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR 600 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (723)
.+|++++|+|+||+||||++..|++.+.+..|. ++.++.++... .. ..+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~r-----~~----------------a~eqL~ 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTYR-----IA----------------AVEQLK 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCSS-----TT----------------HHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCccc-----ch----------------HHHHHH
Confidence 479999999999999999999999999887772 34445443210 00 112223
Q ss_pred HHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC-----ceEEEE--e
Q 048654 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT-----GGVVLV--S 673 (723)
Q Consensus 601 ~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-----~tVIiv--S 673 (723)
.+...+|++... ..+. ...+.+|++ +.+|+++|+| |+|+|......+.++..-+. .+++++ |
T Consensus 155 ~~~~~~gl~~~~------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at 223 (296)
T 2px0_A 155 TYAELLQAPLEV------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT 223 (296)
T ss_dssp HHHTTTTCCCCB------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT
T ss_pred HHHHhcCCCeEe------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 334445554211 1223 344666664 4899999999 99999876555544433322 235555 9
Q ss_pred cCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 674 HDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 674 HD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
|+...+.++|+ ++..+..+.++
T Consensus 224 ~~~~~~~~~~~-----~~~~l~~~giV 245 (296)
T 2px0_A 224 AKYEDMKHIVK-----RFSSVPVNQYI 245 (296)
T ss_dssp BCHHHHHHHTT-----TTSSSCCCEEE
T ss_pred CCHHHHHHHHH-----HHhcCCCCEEE
Confidence 99999998885 33334555554
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.4e-10 Score=123.22 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=43.5
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
+|++|||+|.+ ++++|+|||||||||||++|+|+++|++|+|.+.+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 69999999999 99999999999999999999999999999997643
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=103.90 Aligned_cols=56 Identities=20% Similarity=0.103 Sum_probs=41.6
Q ss_pred cCCCEEEEeCCCCCC--CHHHH----HHHHHHHhhcCcEEEEEeCCHHH--------HHhhCCEEEEEeC
Q 048654 337 VQPTLLLLDEPTNHL--DLRAV----LWLEEYLCRWKKTLVVVSHDRDF--------LNTVCTEIIHLHD 392 (723)
Q Consensus 337 ~~P~lLLLDEPT~~L--D~~~~----~~L~~~L~~~~~TVIivsHdl~~--------l~~iad~Ii~L~~ 392 (723)
.+|+++++|+|++.+ |+... ..|.+.+++.+.|||+++|.... +.++||.|++|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 55222 33444455668899999998765 5678999999974
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-11 Score=120.97 Aligned_cols=30 Identities=33% Similarity=0.252 Sum_probs=27.2
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
.++|++++|+||||||||||+++|+|++.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999998653
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-12 Score=139.77 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=47.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
.+.++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|+..+. .+.|.+.+..+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~i 205 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPI 205 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSC
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccc
Confidence 45666777767666788888 53 889999999999999999999999986554 45555555443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.84 E-value=6.9e-09 Score=111.54 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=37.1
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHH
Q 048654 335 LFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDF 379 (723)
Q Consensus 335 L~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~ 379 (723)
+..+|+|||||||++ ||+.+...|.+.|.+. +.++|++||+++.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 888999999999999 9999999999999876 4689999999753
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-10 Score=121.00 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=71.2
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE---CCc----------e-eEEEEccccc-------cccCcccc
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR---SQK----------L-RIGRYSQHFV-------DLLTMEET 578 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~---~~~----------~-~ig~~~q~~~-------~~~~~~~~ 578 (723)
+..|++++|+||||||||||+|+|+ +++|+.|+|.. .++ . .+||++|.+. ..++. ++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 4569999999999999999999999 99999999987 442 1 3578887541 22333 33
Q ss_pred HHHHHH------hhCCC-CCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 579 PVSYLL------RLHPD-QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 579 ~~~~~~------~~~~~-~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
...++. ..+.. .........+.++|+.++|......+++..|||.+++++.|||
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211110 00111 0011123468899999999752334566889998888899886
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-12 Score=137.64 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=97.9
Q ss_pred EEEEEEEcCCCcccceeceEEEEecC-------cEEEEEcCCCCcHHHHHHHHHcCC----CCCcceEEECC--------
Q 048654 498 LIEVSFSYPNREDFKLSDVDVGIDMG-------TRVAIVGPNGAGKSTLLNLLAGDL----SPTEGEVRRSQ-------- 558 (723)
Q Consensus 498 ~~~ls~~y~~~~~~~L~~isl~i~~G-------e~vaIvGpNGsGKSTLlk~L~Gl~----~p~~G~I~~~~-------- 558 (723)
.++++..|++ ..+++++++.|..| +.++|+||||+|||||+++|+|.+ .+++|.+...+
T Consensus 21 ~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 21 PKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp CSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred CccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 3455666764 24789999999877 899999999999999999999988 67777665322
Q ss_pred ---ceeEEEEccccccccCccccHHHHHHhhCCCC--C-CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 559 ---KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ--E-GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 559 ---~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
...+.+++|...-.....+... ..+..+... . .......+...+..++|.. . .+.+..||+|++||+.++
T Consensus 99 ~~~~~~v~~iDE~~~l~~~~~e~L~-~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-a-t~~~~~Ls~~l~sR~~l~- 174 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNKAVEELLY-SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-A-TTRSGLLSSPLRSRFGII- 174 (334)
T ss_dssp HCCTTCEEEEETGGGCCHHHHHHHH-HHHHTSCCCC---------------CCCEEEE-E-ESCGGGSCHHHHTTCSEE-
T ss_pred HccCCCEEEEcchhhcCHHHHHHHH-HHHHhcccceeeccCcccccccccCCCeEEEE-e-cCCcccCCHHHHHhcCce-
Confidence 2246777764211101111111 111111100 0 0001233445566666643 2 345589999999998654
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcC
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d 684 (723)
.+||+.+...+.++|++.... .-++|+.+.+..+|+
T Consensus 175 ---------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~ 210 (334)
T 1in4_A 175 ---------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAK 210 (334)
T ss_dssp ---------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHH
T ss_pred ---------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHH
Confidence 677877778888877665311 124788888877763
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.5e-11 Score=116.30 Aligned_cols=39 Identities=18% Similarity=0.065 Sum_probs=27.7
Q ss_pred cEEEEECCCCccHHHHHHHHHhCCCCCC-CcEEEEEeeee
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWRKIPVP-KNIDVLLVEQE 230 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~~~~~~-~~~~i~~~~q~ 230 (723)
++++|+|+||||||||+++|+|++.+.. ..+.|.+.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 5899999999999999999999865431 14556554433
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.81 E-value=7e-09 Score=110.08 Aligned_cols=98 Identities=21% Similarity=0.147 Sum_probs=68.4
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCc
Q 048654 184 TSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNST 263 (723)
Q Consensus 184 isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (723)
++|...+|++++|+|+|||||||+++.|++.+.+. .+++.+++.+... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r--~~a------------------------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFR--AAA------------------------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTC--HHH-------------------------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcccccc--HHH-------------------------
Confidence 45667889999999999999999999999875432 3456665543211 000
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHH---HHHHHHccCCC
Q 048654 264 SVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRI---SLARALFVQPT 340 (723)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRv---aLArAL~~~P~ 340 (723)
..+...+++.+|+. . +..+|||+.+++ +|++++..+|+
T Consensus 148 ---------------------------------~eqL~~~~~~~gl~-~-----~~~~s~~~~~~v~~~al~~a~~~~~d 188 (306)
T 1vma_A 148 ---------------------------------IEQLKIWGERVGAT-V-----ISHSEGADPAAVAFDAVAHALARNKD 188 (306)
T ss_dssp ---------------------------------HHHHHHHHHHHTCE-E-----ECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred ---------------------------------HHHHHHHHHHcCCc-E-----EecCCccCHHHHHHHHHHHHHhcCCC
Confidence 00011223344553 1 235789999999 99999999999
Q ss_pred EEEEeCCCC
Q 048654 341 LLLLDEPTN 349 (723)
Q Consensus 341 lLLLDEPT~ 349 (723)
++|+|+|..
T Consensus 189 vvIiDtpg~ 197 (306)
T 1vma_A 189 VVIIDTAGR 197 (306)
T ss_dssp EEEEEECCC
T ss_pred EEEEECCCc
Confidence 999999974
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.2e-09 Score=109.12 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=84.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGE 268 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 268 (723)
.+|++++|+|+||+||||++..|++.+.+..| ..|.+++.+.... ...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~--~a~----------------------------- 150 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRI--AAV----------------------------- 150 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSST--THH-----------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccc--hHH-----------------------------
Confidence 47999999999999999999999987543222 1456655443210 000
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 048654 269 EDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348 (723)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT 348 (723)
+.+ ..+.+.+|+.... ..+ +...+.+|++ +.+|+++|+| |
T Consensus 151 ----------eqL-------------------~~~~~~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T 190 (296)
T 2px0_A 151 ----------EQL-------------------KTYAELLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--T 190 (296)
T ss_dssp ----------HHH-------------------HHHHTTTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--C
T ss_pred ----------HHH-------------------HHHHHhcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--C
Confidence 000 0011123332111 112 3445666665 4999999999 9
Q ss_pred CCCCHHHHHHHHHHHhhc----C-cEEEEE--eCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 349 NHLDLRAVLWLEEYLCRW----K-KTLVVV--SHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 349 ~~LD~~~~~~L~~~L~~~----~-~TVIiv--sHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
+++|+.....+.++..-. . .+++++ +|..+.+.++|+++..+..+.++.
T Consensus 191 ~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 191 AGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 999987655444433221 1 245555 999999999999887777777764
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-08 Score=111.87 Aligned_cols=48 Identities=25% Similarity=0.198 Sum_probs=40.1
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~ 230 (723)
-+++||++.+|++++|||+||||||||+++|+|++.+. .|.|.+.+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g~D 330 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGD 330 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEecCc
Confidence 46899999999999999999999999999999986543 4566665543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-09 Score=116.23 Aligned_cols=121 Identities=20% Similarity=0.157 Sum_probs=65.4
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC-CCCCcEEEEEe-eeeecCCChHHHHHHHHhhHHHHHHHHHHHh
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI-PVPKNIDVLLV-EQEVVGDDRSAIQAVVSAHEELVKLREEVAS 258 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~-~~~~~~~i~~~-~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 258 (723)
++++++. .+|++++|+||||||||||+++|+|... +..| .|... +...... . ...+..
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G--~I~~~~G~g~~tt-~----------------~~~i~~ 265 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTN--DVSNVSGLGQHTT-T----------------AARLYH 265 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------C----------------CCEEEE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccC--CccccCCCCccce-E----------------EEEEEE
Confidence 4445543 3799999999999999999999999865 5444 33322 1100000 0 000000
Q ss_pred hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHH
Q 048654 259 LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL 335 (723)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL 335 (723)
+.+.... .+...+.+. .+..+........+.++++.+|+.. ..+..+.+|| ||+||++||+++
T Consensus 266 v~q~~~l------~dtpgv~e~------~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 266 FPHGGDV------IDSPGVREF------GLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CTTSCEE------EECHHHHTC------CCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTS
T ss_pred ECCCCEe------cCcccHHHh------hhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcC
Confidence 1000000 000000000 0001122334456778888999864 4578999999 999999999875
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-09 Score=122.96 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=100.2
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHh--CCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhh
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLAW--RKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQ 260 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G--~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (723)
.+++++..+.++.|+|++||||||++++|.. +....|+...+.+++.. +.....+ ..++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK--~~el~~~-----------------~~lP 219 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK--MLELSVY-----------------EGIP 219 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS--SSGGGGG-----------------TTCT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc--hhhhhhh-----------------ccCC
Confidence 4677888999999999999999999999875 34456777776655421 1100000 0011
Q ss_pred cCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc-C-CCCCCCChHHHHHH---------
Q 048654 261 NSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ-G-RPTKSFSGGWRMRI--------- 329 (723)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~-~-~~~~~LSGGqrQRv--------- 329 (723)
+.... ..... ......+..+ ..+.+.|. ++|..+|+..... + +....+||||+|+.
T Consensus 220 hl~~~-----Vvtd~---~~a~~~L~~~----~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~ 286 (512)
T 2ius_A 220 HLLTE-----VVTDM---KDAANALRWC----VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSM 286 (512)
T ss_dssp TBSSS-----CBCSH---HHHHHHHHHH----HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC------
T ss_pred cccce-----eecCH---HHHHHHHHHH----HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccch
Confidence 11000 00000 0111111111 13345554 6788888753110 0 11235788887652
Q ss_pred -HHHHHHccCCC-EEEEeCCCCCCCHHH--HHHHHHHHh----hcCcEEEEEeCCHH-------HHHhhCCEEEEE
Q 048654 330 -SLARALFVQPT-LLLLDEPTNHLDLRA--VLWLEEYLC----RWKKTLVVVSHDRD-------FLNTVCTEIIHL 390 (723)
Q Consensus 330 -aLArAL~~~P~-lLLLDEPT~~LD~~~--~~~L~~~L~----~~~~TVIivsHdl~-------~l~~iad~Ii~L 390 (723)
.+|+++...|. +||+||+++.++... ...++..|. ..|.++|++||++. ...++.+||++-
T Consensus 287 ~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 287 DAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp ---CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred hccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 35677788898 899999999988432 222222232 23679999999987 566777777653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.71 E-value=8e-08 Score=97.34 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=39.4
Q ss_pred cCCCeEEeccCCCCC--CHHHH----HHHHHHHHHcCceEEEEecCHHH--------HHHhcCcCCCcEEEEEEC
Q 048654 636 SKPHILLLDEPTNHL--DMQSI----DALADALDEFTGGVVLVSHDSRL--------ISRVCDDEERSEIWVVEN 696 (723)
Q Consensus 636 ~~p~lLlLDEPT~~L--D~~s~----~~l~~~L~~~~~tVIivSHD~~~--------~~~~~d~~~~drv~vl~~ 696 (723)
.+|+++++|+|+..+ |+... ..+.+.+++.+.+||+++|.... +.++|| .|++|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D-----~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVD-----GIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSS-----EEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEE-----EEEEEEE
Confidence 579999999999988 54332 33444445666799999998775 457774 8888863
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-11 Score=126.86 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=84.1
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHH
Q 048654 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLRE 254 (723)
Q Consensus 175 y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (723)
|+...+|++++|.+++| ++|+||||||||||+++|+|...+ +.+.+.+.++.......... ....+.+
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~------~i~~vf~ 97 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESER------AVRQVFQ 97 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHH------HHHHHHH
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHH------HHHHHHH
Confidence 34556899999999999 999999999999999999987432 34444444432221111111 1111222
Q ss_pred HHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHH
Q 048654 255 EVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLAR 333 (723)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLAr 333 (723)
..... +...+.+ .... +......... +......++.+.+|||||+||+.|++
T Consensus 98 ~a~~~~p~i~~~D-------eid~-------------~~~~r~~~~~-------~~~~~~~~~~l~~Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 98 RAKNSAPCVIFFD-------EVDA-------------LCPRRSDRET-------GASVRVVNQLLTEMDGLEARQQVFIM 150 (274)
T ss_dssp HHHHTCSEEEEEE-------TCTT-------------TCC----------------CTTHHHHHHHHHHTCCSTTCEEEE
T ss_pred HHHhcCCCeEeee-------hhhh-------------hhcccCCCcc-------hHHHHHHHHHHHhhhcccccCCEEEE
Confidence 21111 1111100 0000 0000000000 00011223455689999999999999
Q ss_pred HHccCCCEEEEeCCCC------------CCCHHHHHHHHHHHhh
Q 048654 334 ALFVQPTLLLLDEPTN------------HLDLRAVLWLEEYLCR 365 (723)
Q Consensus 334 AL~~~P~lLLLDEPT~------------~LD~~~~~~L~~~L~~ 365 (723)
|+..+|++| |||+. ..|...+..|++.+.+
T Consensus 151 a~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 151 AATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred eecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 999999986 99864 3467777777776643
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.9e-11 Score=125.58 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=79.5
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eEEEEcccc---ccccCcc
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RIGRYSQHF---VDLLTME 576 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~ig~~~q~~---~~~~~~~ 576 (723)
.+|++++|.+.+| ++|+||||||||||+++|+|.+.+ |.|.+.+.. .+++++|.. ...+.+.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3688999999999 999999999999999999999876 566665431 112222211 0000000
Q ss_pred ccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC--------
Q 048654 577 ETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN-------- 648 (723)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~-------- 648 (723)
+.. . .... .... . ..+.......+.+..|||||+||+.|++++.++|++| |||+.
T Consensus 110 Dei-d---~~~~------~r~~-~----~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~ 172 (274)
T 2x8a_A 110 DEV-D---ALCP------RRSD-R----ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKT 172 (274)
T ss_dssp ETC-T---TTCC--------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEE
T ss_pred ehh-h---hhhc------ccCC-C----cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeE
Confidence 000 0 0000 0000 0 0000011112345689999999999999999999985 99974
Q ss_pred ----CCCHHHHHHHHHHHH
Q 048654 649 ----HLDMQSIDALADALD 663 (723)
Q Consensus 649 ----~LD~~s~~~l~~~L~ 663 (723)
-.|...+..|++.+.
T Consensus 173 i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EECCSCCHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHHHHH
Confidence 235667777766654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=7.1e-08 Score=104.24 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=48.3
Q ss_pred HHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---HHHHHH---HHhhcCcEEEEEeCCHH------
Q 048654 327 MRISLARALFVQ--PTLLLLDEPTNHL----------DL----RA---VLWLEE---YLCRWKKTLVVVSHDRD------ 378 (723)
Q Consensus 327 QRvaLArAL~~~--P~lLLLDEPT~~L----------D~----~~---~~~L~~---~L~~~~~TVIivsHdl~------ 378 (723)
+-+.++++++.+ |++||+|||++.+ |+ .. ...+.. ++++++.|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 446678888755 9999999999998 33 11 122222 23566889999999653
Q ss_pred ----------HHHhhCCEEEEEeCCEEE
Q 048654 379 ----------FLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 379 ----------~l~~iad~Ii~L~~G~i~ 396 (723)
.+..+||.++.++.+++.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeeee
Confidence 266789999999876653
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.5e-10 Score=119.42 Aligned_cols=58 Identities=29% Similarity=0.236 Sum_probs=53.1
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEE-------------------ecCcEEEEEcCCCCcHHHHHHHHHcCCC--CCcce
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGI-------------------DMGTRVAIVGPNGAGKSTLLNLLAGDLS--PTEGE 553 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i-------------------~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~--p~~G~ 553 (723)
+|+++||++.|+ +++++|+|.+ .+|+++||+||||||||||+++|+|++. |++|+
T Consensus 37 ~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 37 DLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 578899999994 4789999988 8999999999999999999999999998 99999
Q ss_pred EEE
Q 048654 554 VRR 556 (723)
Q Consensus 554 I~~ 556 (723)
|.+
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 976
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.64 E-value=6.1e-08 Score=108.49 Aligned_cols=178 Identities=11% Similarity=0.044 Sum_probs=103.7
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHH
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA 257 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (723)
-+.|+++..-|.+|+++.|.|++|+|||||+..|++...+..+ ..+.|++.+... ......+. ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~s~--~~l~~r~~----------~~~~ 256 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEMSA--QQLVMRML----------CAEG 256 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSSCH--HHHHHHHH----------HHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCCCH--HHHHHHHH----------HHHc
Confidence 4578888888999999999999999999999999864322111 245565543211 11111000 0000
Q ss_pred hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHc-
Q 048654 258 SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALF- 336 (723)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~- 336 (723)
.+. . ..+ . ...+ ......++...+..++...... .....+|.++.+ +.++.++
T Consensus 257 ~~~-------------~----~~l---~--~g~l-~~~~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~ 310 (454)
T 2r6a_A 257 NIN-------------A----QNL---R--TGKL-TPEDWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQ 310 (454)
T ss_dssp TCC-------------H----HHH---H--TSCC-CHHHHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHT
T ss_pred CCC-------------H----HHH---h--cCCC-CHHHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHH
Confidence 000 0 000 0 0001 1111223444444443322222 234579999876 5666665
Q ss_pred -cCCCEEEEeCCCCCCCH--------HHHHHHHHHHh----hcCcEEEEEeC---------C--HH--------HHHhhC
Q 048654 337 -VQPTLLLLDEPTNHLDL--------RAVLWLEEYLC----RWKKTLVVVSH---------D--RD--------FLNTVC 384 (723)
Q Consensus 337 -~~P~lLLLDEPT~~LD~--------~~~~~L~~~L~----~~~~TVIivsH---------d--l~--------~l~~ia 384 (723)
.+|+++|+|+++...+. ..+..+.+.|+ +++.+||+++| + +. .+...|
T Consensus 311 ~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~a 390 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDA 390 (454)
T ss_dssp TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHC
T ss_pred HcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhC
Confidence 68999999999998843 22344444443 45789999999 3 22 577889
Q ss_pred CEEEEEeCCE
Q 048654 385 TEIIHLHDQK 394 (723)
Q Consensus 385 d~Ii~L~~G~ 394 (723)
|.|++|+.+.
T Consensus 391 D~vi~l~r~~ 400 (454)
T 2r6a_A 391 DIVAFLYRDD 400 (454)
T ss_dssp SEEEEEEETT
T ss_pred CEEEEEeccc
Confidence 9999998665
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-08 Score=111.23 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=99.5
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHH-------
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLL------- 584 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~------- 584 (723)
.|+++...+.+|+++.|.|++|+|||||+..|++...+..|. .+.|+.-... .. .....+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E~s----~~-~l~~r~~~~~~~~~ 259 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLEMS----AQ-QLVMRMLCAEGNIN 259 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESSSC----HH-HHHHHHHHHHHTCC
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECCCC----HH-HHHHHHHHHHcCCC
Confidence 577787789999999999999999999999999876554341 2334332210 00 0000000
Q ss_pred --hhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc--cCCCeEEeccCCCCCCH--------
Q 048654 585 --RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM--SKPHILLLDEPTNHLDM-------- 652 (723)
Q Consensus 585 --~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~--~~p~lLlLDEPT~~LD~-------- 652 (723)
..............+...+..++........ ...+|.++.+ ..++.++ .+|+++|+|+++...+.
T Consensus 260 ~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~ 336 (454)
T 2r6a_A 260 AQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQ 336 (454)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHH
Confidence 0000000001222344444444432222222 3579999987 4555555 68999999999998742
Q ss_pred HHHHHHHHHHH----HcCceEEEEec---------C--HH--------HHHHhcCcCCCcEEEEEECCeE
Q 048654 653 QSIDALADALD----EFTGGVVLVSH---------D--SR--------LISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 653 ~s~~~l~~~L~----~~~~tVIivSH---------D--~~--------~~~~~~d~~~~drv~vl~~G~i 699 (723)
.....+.+.|+ +++.+||+++| | +. .+...|| .|++|..+..
T Consensus 337 ~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD-----~vi~l~r~~~ 401 (454)
T 2r6a_A 337 QEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDAD-----IVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCS-----EEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCC-----EEEEEecccc
Confidence 23345555554 44678999999 3 22 4677774 8999986543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-08 Score=112.95 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHHH--cc---------------CCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHH
Q 048654 616 PIAKLSGGQKARVVFTSIS--MS---------------KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRL 678 (723)
Q Consensus 616 ~i~~LSGGqkqRv~lAral--~~---------------~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~ 678 (723)
..+.+||||+|-..+|.+. ++ .-.+++|||. +-+|.+.....++++++++--+|++|=+ .
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~ 452 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--N 452 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--S
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--h
Confidence 3579999999975444433 22 1257999999 9999999999999999999889999988 4
Q ss_pred HHHhcCcCCCcEEEEEE
Q 048654 679 ISRVCDDEERSEIWVVE 695 (723)
Q Consensus 679 ~~~~~d~~~~drv~vl~ 695 (723)
+..++ +.++.+-
T Consensus 453 i~p~v-----~~~~~~~ 464 (483)
T 3euj_A 453 ISPER-----GTTYKLV 464 (483)
T ss_dssp CCCSS-----SEEEECC
T ss_pred hhhcc-----CceEEEE
Confidence 44444 4666553
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-08 Score=103.09 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=22.9
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHH-cCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA-GDLS 548 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~-Gl~~ 548 (723)
...++||++.+|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999 9984
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.4e-09 Score=112.24 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=30.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
++..|++++|+||||||||||||+|+|+.+|+.|+|..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 45579999999999999999999999999999999987
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-08 Score=96.46 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=33.1
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~ 664 (723)
+.+.+|++++.+|.++++| |+++|..++..+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3477899999999999999 999999999999988865
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-09 Score=117.93 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=53.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
+|+++++++.|++..+|+++||++.+|++++|+|+||||||||+++|+|+..+.. ++|.+++.++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~--g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG--HKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC--CEEEEEEEcC
Confidence 4677888888887889999999999999999999999999999999998765443 4455555443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.8e-09 Score=119.91 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=96.1
Q ss_pred EEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-ceEEECCc------eeEEEEccccccccC
Q 048654 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE-GEVRRSQK------LRIGRYSQHFVDLLT 574 (723)
Q Consensus 502 s~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~-G~I~~~~~------~~ig~~~q~~~~~~~ 574 (723)
+.-|+. ..+++++++.+..|+.++|+||||+|||||+++|++++++.. |.+.+.+. ..++++++.....+.
T Consensus 41 ~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~ 118 (604)
T 3k1j_A 41 DQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV 118 (604)
T ss_dssp HHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHH
T ss_pred ceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHH
Confidence 334554 347899999999999999999999999999999999999887 66655332 235665543210000
Q ss_pred ccccHHHHHH---------------hh-------CCCCCCC----cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 575 MEETPVSYLL---------------RL-------HPDQEGL----SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 575 ~~~~~~~~~~---------------~~-------~~~~~~~----~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
+....... .. .....+. ........++..+... . ...+.+|+|++|++
T Consensus 119 --e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~---~-~~~g~~~~g~~~~i 192 (604)
T 3k1j_A 119 --EKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD---P-FQSGGLGTPAHERV 192 (604)
T ss_dssp --HHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC---C-C----CCCCGGGGE
T ss_pred --HHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec---h-hhcCCccccccccc
Confidence 00000000 00 0000000 0000122233222221 1 12257999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~ 664 (723)
..++....++.+|+|||... |++..+..|.++|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899999999999985
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=8.8e-11 Score=126.27 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=94.2
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCC-------cEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHG-------KRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~G-------e~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~ 237 (723)
.++.++++..|++..+++++++.|.+| ++++|+||||+|||||+++|+|.... .+......+... ..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-----~~~~~sg~~~~~-~~ 91 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-----NIHVTSGPVLVK-QG 91 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-----CEEEEETTTCCS-HH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEechHhcC-HH
Confidence 355667777788888999999999887 89999999999999999999986421 111111111111 11
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcC-CCCCCCCCchhhHHHHHHHHHHHHHhcC------chHHHHHHHHHHHhCCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTS-VDGEEDGDDANDAGEKLAELYEKLQILG------SDAAEAQASKILAGLGFT 310 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~L~~lgl~ 310 (723)
.+. .+... +..... ...+...... ...+.+ +..+.... .......+...+..++|.
T Consensus 92 ~l~----------~~~~~---~~~~~v~~iDE~~~l~~-~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 92 DMA----------AILTS---LERGDVLFIDEIHRLNK-AVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp HHH----------HHHHH---CCTTCEEEEETGGGCCH-HHHHHH---HHHHHTSCCCC---------------CCCEEE
T ss_pred HHH----------HHHHH---ccCCCEEEEcchhhcCH-HHHHHH---HHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 110 01110 100000 0000000000 111111 11111111 111223344555666663
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCE
Q 048654 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTE 386 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~ 386 (723)
. ....+..||+|++||+.++ .+||+.+...+.++|++... ..-++|+.+.+..+|++
T Consensus 155 ~--at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 155 G--ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp E--EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred E--ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence 2 3466789999999998655 77888777777777765311 01146888888877754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.8e-09 Score=107.02 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=35.7
Q ss_pred cceEEEeE-EEEe-CCeeeeEeeeEEEeC---CcEEEEECCCCccHHHHHHHHHhC
Q 048654 164 KDITIDNF-SVAA-RGKELLKSTSVRISH---GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 164 ~~I~l~nl-s~~y-~~~~vL~~isl~i~~---Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|+++|+ +++| ++.++|+|+||+|.+ |++++|+|++||||||++++|++.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999 9999 778999999999999 999999999999999999999974
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-09 Score=119.98 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=58.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii 388 (723)
+..+..+||+. +| +++++|||++.+|+..+...++.+... +.||+ +|.+..+..+|++|+
T Consensus 128 d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 128 DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVY 193 (392)
T ss_dssp TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHH
T ss_pred cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHH
Confidence 34555677763 99 999999999999999998888888765 34543 999999999999999
Q ss_pred -EEeCC-EEEEecCCh
Q 048654 389 -HLHDQ-KLHFYRGNF 402 (723)
Q Consensus 389 -~L~~G-~i~~~~g~~ 402 (723)
+|++| +++ +.|.+
T Consensus 194 ~~L~~G~~~~-~~~~~ 208 (392)
T 1ni3_A 194 QYLTETKQPI-RKGDW 208 (392)
T ss_dssp HHHHTTCSCG-GGSCC
T ss_pred HHhccCCcee-ecCCC
Confidence 99999 774 33544
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-09 Score=113.29 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=49.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEE-------------------eCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEE
Q 048654 165 DITIDNFSVAARGKELLKSTSVRI-------------------SHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i-------------------~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~ 225 (723)
.|+++||++.| .+++++++|.+ .+|+++||+||||||||||+++|+|+....|..|.|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 48889999999 47999999988 8999999999999999999999999755113344444
Q ss_pred E
Q 048654 226 L 226 (723)
Q Consensus 226 ~ 226 (723)
+
T Consensus 115 v 115 (308)
T 1sq5_A 115 L 115 (308)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.8e-08 Score=98.30 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=22.9
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHH-hCC
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA-WRK 215 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~-G~~ 215 (723)
.+...++||++++|++++|+||||||||||+++|+ |+.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35688999999999999999999999999999999 985
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-09 Score=106.12 Aligned_cols=54 Identities=26% Similarity=0.280 Sum_probs=42.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.|+++|+...|+ -+|+|.+ ++++|+|||||||||||++|+|++.|++|.|.+++
T Consensus 9 ~l~l~~~~~~~~---------~~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFA---------RTFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEE---------EEECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccC---------CEEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 578888865442 1566666 89999999999999999999999999999987654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.3e-09 Score=116.82 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=87.2
Q ss_pred ceEEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCcceEEE---CCceeEEEEccccc--ccc--CccccHHHH--H
Q 048654 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVRR---SQKLRIGRYSQHFV--DLL--TMEETPVSY--L 583 (723)
Q Consensus 515 ~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G--l~~p~~G~I~~---~~~~~ig~~~q~~~--~~~--~~~~~~~~~--~ 583 (723)
.+++++..+..+.|+|.+||||||++++|.. +..++.|.+.+ +.+. .-++.+. .++ .+..++... .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~---~el~~~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM---LELSVYEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS---SGGGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch---hhhhhhccCCcccceeecCHHHHHHH
Confidence 4788889999999999999999999999876 45555566543 2111 0011110 111 122222111 1
Q ss_pred HhhCCCCCCCcHHHHHHHHHHhCCCCCCCCc--CCCCCCCHHHHHHH----------HHHHHHccCCC-eEEeccCCCCC
Q 048654 584 LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL--TPIAKLSGGQKARV----------VFTSISMSKPH-ILLLDEPTNHL 650 (723)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~--~~i~~LSGGqkqRv----------~lAral~~~p~-lLlLDEPT~~L 650 (723)
+..... ...++ .++|..+|+.+.... +....+|+||+|+. .+++++...|. ++|+||++..+
T Consensus 236 L~~~~~----EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll 310 (512)
T 2ius_A 236 LRWCVN----EMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLM 310 (512)
T ss_dssp HHHHHH----HHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHH
T ss_pred HHHHHH----HHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHH
Confidence 110000 01122 256777887542211 11135788887753 35566777898 89999999988
Q ss_pred CHHHHHHHHHHHH---Hc----CceEEEEecCHH
Q 048654 651 DMQSIDALADALD---EF----TGGVVLVSHDSR 677 (723)
Q Consensus 651 D~~s~~~l~~~L~---~~----~~tVIivSHD~~ 677 (723)
+... ..+.+.|. +. +.++|++||+..
T Consensus 311 ~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 311 MTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8432 22333332 22 347999999987
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.7e-06 Score=102.84 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=26.7
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
|.+|+++.|.||+|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999998875543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-08 Score=102.43 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=35.6
Q ss_pred CCeEEEEEE-EEEcCCCcccceeceEEEEec---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 493 PPLLQLIEV-SFSYPNREDFKLSDVDVGIDM---GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 493 ~~~l~~~~l-s~~y~~~~~~~L~~isl~i~~---Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.++|+++|+ ++.|++ ...+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 999932 24689999999999 9999999999999999999999854
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-07 Score=93.30 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=26.8
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
||++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999974
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-09 Score=117.87 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=77.8
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE-CC---c--eeEEEEccccc---cccCccccHHH
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR-SQ---K--LRIGRYSQHFV---DLLTMEETPVS 581 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~-~~---~--~~ig~~~q~~~---~~~~~~~~~~~ 581 (723)
.+|+++++.+.+|++++|+||||||||||+++|+|. ..|.+.. .. . ..+++++|.+. +.+.....
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~--- 230 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGG--- 230 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTT---
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHH---
Confidence 478999999999999999999999999999999985 3677664 21 1 12344444331 11110000
Q ss_pred HHHhhCCCCCCCcHHHHHHHHHHh---------------CCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE-ecc
Q 048654 582 YLLRLHPDQEGLSKQEAVRAKLGK---------------FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL-LDE 645 (723)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~L~~---------------~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl-LDE 645 (723)
..+......+......+...+.. .-+........+..+++|.++|+..+.+++..|++++ ||+
T Consensus 231 -~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~ 309 (377)
T 1svm_A 231 -ESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER 309 (377)
T ss_dssp -TTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred -HHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence 00000000000000122333320 1111111123456789999999999888889999888 999
Q ss_pred CCC
Q 048654 646 PTN 648 (723)
Q Consensus 646 PT~ 648 (723)
|+.
T Consensus 310 ~~~ 312 (377)
T 1svm_A 310 SEF 312 (377)
T ss_dssp CTH
T ss_pred CHH
Confidence 987
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.36 E-value=7.4e-07 Score=96.26 Aligned_cols=138 Identities=16% Similarity=0.240 Sum_probs=78.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHH
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (723)
-|.+|+++.|.||||||||||+..++.......|.+ .|+.-.. .. ... +
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~v--------lyi~~E~----~~--~~~-~---------------- 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIA--------AFIDAEH----AL--DPE-Y---------------- 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--------EEEESSC----CC--CHH-H----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--------EEEECCC----Cc--CHH-H----------------
Confidence 478999999999999999999888876543333332 3333211 00 000 0
Q ss_pred HHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC--CCeEEeccCCCCC----------CH----HH---HHH--
Q 048654 599 VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK--PHILLLDEPTNHL----------DM----QS---IDA-- 657 (723)
Q Consensus 599 ~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~--p~lLlLDEPT~~L----------D~----~s---~~~-- 657 (723)
...+|+..... ......+.. +-+.++++++.. |++||+|||++.+ |. .. ...
T Consensus 106 ----a~~lG~~~~~l-~i~~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 106 ----AKKLGVDTDSL-LVSQPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp ----HHHTTCCGGGC-EEECCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred ----HHHcCCCHHHe-EEecCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 11223221100 000112332 345677777654 9999999999998 32 11 112
Q ss_pred -HHHHHHHcCceEEEEecCHH----------------HHHHhcCcCCCcEEEEEECCeE
Q 048654 658 -LADALDEFTGGVVLVSHDSR----------------LISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 658 -l~~~L~~~~~tVIivSHD~~----------------~~~~~~d~~~~drv~vl~~G~i 699 (723)
|...+++++.+||+++|-.. .+..+|| .++.++.+++
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad-----~~l~lrr~~~ 232 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYAS-----VRLDVRRIET 232 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCS-----EEEEEEEEEE
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccc-----eEEEEEEeee
Confidence 22223566789999999653 2566775 6667766554
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-07 Score=91.45 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=25.9
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
|+++.+|++++|+||||||||||+++|+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5788899999999999999999999999974
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.8e-07 Score=87.68 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=35.6
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcce
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~ 553 (723)
++++|.+.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6899999999 99999999999999999999998877664
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.3e-07 Score=90.75 Aligned_cols=69 Identities=16% Similarity=0.049 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CcEEEEEeCCHHHH--HhhCCEEEEEe
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW-KKTLVVVSHDRDFL--NTVCTEIIHLH 391 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~-~~TVIivsHdl~~l--~~iad~Ii~L~ 391 (723)
.+.|+.+|..+++.++.+|..+.++ ++.++|.....+.+.+... +.+||+.+|.+.+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999999988754433 3456677777777766654 45888888987665 67799999886
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.27 E-value=8e-07 Score=96.18 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=75.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC-CceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHH
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS-QKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK 602 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~-~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (723)
-.++|+|+||+|||||++.|+|... ..|..... ....++.+.+... .
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~-------------------------------~ 215 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYF-------------------------------R 215 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTE-------------------------------E
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCc-------------------------------e
Confidence 3789999999999999999998652 11111000 0011122111100 0
Q ss_pred HHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec-cCCCCCCHHHHHHHHHHHHHc--CceEEEEe--cCHH
Q 048654 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD-EPTNHLDMQSIDALADALDEF--TGGVVLVS--HDSR 677 (723)
Q Consensus 603 L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD-EPT~~LD~~s~~~l~~~L~~~--~~tVIivS--HD~~ 677 (723)
+..++..+... .++..+|+|++|++. +.+...++-|+++| +|+.++|......+...+... +..+|+|. ||+.
T Consensus 216 ~~l~Dt~G~~~-~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 216 YQIIDTPGLLD-RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp EEEEECTTTSS-SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred EEEEeCCCccc-cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 01111122222 345689999998776 55555677789999 999999999887777777653 45788888 8874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.6e-07 Score=89.83 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=31.0
Q ss_pred HHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc
Q 048654 628 VVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665 (723)
Q Consensus 628 v~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~ 665 (723)
...|++++.+|.++++| |+++|...+..+++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999 9999999999888877653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.8e-07 Score=86.56 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=37.1
Q ss_pred EEEeEEEEeCCeeee--EeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 167 TIDNFSVAARGKELL--KSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 167 ~l~nls~~y~~~~vL--~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
.|..|.+. +...+ ++++|.+.+| +++|+||||||||||+++|.++..+
T Consensus 3 ~i~~l~i~--nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 3 YIEKLELK--GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEEEE--SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEEEe--CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34444443 23356 7889999999 9999999999999999999976443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=8.8e-07 Score=105.39 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=56.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC-CCCHHHHHHHHHHHHHcC---ceEEE-EecCHHHHHHhcC
Q 048654 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN-HLDMQSIDALADALDEFT---GGVVL-VSHDSRLISRVCD 684 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~-~LD~~s~~~l~~~L~~~~---~tVIi-vSHD~~~~~~~~d 684 (723)
..+.-+|.|+.+|..+++.++.++.+||+|||.. +||......++..|.... ..|++ .|||.+.+..+++
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 3456789999999999999999999999999996 999877666666555442 35666 4999888888875
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.7e-07 Score=107.01 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=57.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CcEEEE-EeCCHHHHHhhCCEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN-HLDLRAVLWLEEYLCRW---KKTLVV-VSHDRDFLNTVCTEI 387 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~-~LD~~~~~~L~~~L~~~---~~TVIi-vsHdl~~l~~iad~I 387 (723)
+..+.-+|+|+.+|..++++++.++++||||||.. +||......+...+... ..+|++ .||+.+.+..+++..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 34566789999999999999999999999999997 99987765555545433 246666 499988888777643
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.23 E-value=8.9e-07 Score=99.34 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=72.2
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
.+.++++.+..| +.|+||+|+|||||+++|++.... .+-++. ..+ +...
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is--------~~~---------~~~~- 88 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHIS--------GSD---------FVEL- 88 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEE--------GGG---------TTTC-
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCC--------HHH---------HHHH-
Confidence 466677777777 889999999999999999984310 010110 000 0000
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC----------CCCCCHHHHHHHHHH
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP----------TNHLDMQSIDALADA 661 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP----------T~~LD~~s~~~l~~~ 661 (723)
.+ =.|++++|..|++|....|.||++||+ +.+.|......+.++
T Consensus 89 ------------------------~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~L 142 (476)
T 2ce7_A 89 ------------------------FV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQL 142 (476)
T ss_dssp ------------------------CT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHH
T ss_pred ------------------------Hh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHH
Confidence 00 026788999999999999999999999 346676665556666
Q ss_pred HHHc---C----ceEEEEecCHHHHH
Q 048654 662 LDEF---T----GGVVLVSHDSRLIS 680 (723)
Q Consensus 662 L~~~---~----~tVIivSHD~~~~~ 680 (723)
|..+ . ..||.+||+.+.+.
T Consensus 143 L~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 143 LVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHhccCCCCCEEEEEecCChhhhc
Confidence 5543 2 35888999986553
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-07 Score=91.25 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHH-HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEec
Q 048654 630 FTS-ISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSH 674 (723)
Q Consensus 630 lAr-al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSH 674 (723)
.++ +++.+|.+++|||||+++|..+...|.+.|...... +.++|
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~ 160 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSK 160 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGG
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhh
Confidence 455 678899999999999999998888888877665322 23455
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.1e-07 Score=107.81 Aligned_cols=175 Identities=15% Similarity=0.079 Sum_probs=92.0
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCCh-------HHHHHH
Q 048654 170 NFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR-------SAIQAV 242 (723)
Q Consensus 170 nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~-------~~~~~~ 242 (723)
+++.-||...+++++++.+..|+.++|+||||+|||||+++|++...+. ..+.+.+.+........ .....+
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~ 117 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDENMPRIKTVPACQGRRI 117 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCTTSCEEEEEETTHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccccCCcEEEEecchHHHH
Confidence 4444578888999999999999999999999999999999999976432 22344333222111000 000001
Q ss_pred HHhhHHHHHHH---HHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHhCCCCccccC
Q 048654 243 VSAHEELVKLR---EEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS---DAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 243 ~~~~~~~~~l~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
+.......... .....+ ....... +..+. .....+. .........++..+... .
T Consensus 118 ~e~~~~~~~~~~~~r~~~~~~~~~~~~~-------nl~v~--------~~~~~~~~~v~~~~~~~~~L~G~~~~~----~ 178 (604)
T 3k1j_A 118 VEKYREKAKSQESVKSSNMRLKSTVLVP-------KLLVD--------NCGRTKAPFIDATGAHAGALLGDVRHD----P 178 (604)
T ss_dssp HHHHHHHHHHHTCC-----------CCC-------EEEEC--------CTTCSSCCEEECTTCCHHHHHCEECCC----C
T ss_pred HHHHHHhhccchhhhhhccccccccccc-------ceeec--------cccCCCCCEEEcCCCCHHhcCceEEec----h
Confidence 00000000000 000000 0000000 00000 0000000 00000111122111111 1
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
.....+|+|++|++...+....++.+|+|||... |++.....|.+.|.+
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 2235699999999999999999999999999988 899999999999974
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.18 E-value=7.3e-07 Score=100.00 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCC----------CCCCHHHHHHHHHHHhhc-------CcEEEEEeCCHHHHH
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPT----------NHLDLRAVLWLEEYLCRW-------KKTLVVVSHDRDFLN 381 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT----------~~LD~~~~~~L~~~L~~~-------~~TVIivsHdl~~l~ 381 (723)
|++++|..+++|....|.||+|||+. ++.|......+..+|..+ +..||.+||+++.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 67889999999999999999999994 456665555444444322 358899999987654
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=9.6e-07 Score=87.38 Aligned_cols=126 Identities=19% Similarity=0.179 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHH
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLG 604 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 604 (723)
+++|+|+|||||||+.++|+++ |...++.. ... ...... + ...+..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d------------------~~~---~~~~~~--~---~~~~~~i~~ 52 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD------------------VVA---REVVAK--D---SPLLSKIVE 52 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH------------------HHH---HHTTCS--S---CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH------------------HHH---HHHccC--C---hHHHHHHHH
Confidence 6899999999999999999983 32221110 000 000000 0 123445566
Q ss_pred hCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC-ceEEEEecCHHHH--HH
Q 048654 605 KFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT-GGVVLVSHDSRLI--SR 681 (723)
Q Consensus 605 ~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-~tVIivSHD~~~~--~~ 681 (723)
.||... -.+.|+.+|..++..+..+|..+.+. ++.++|.....+.+.+.... .+||+.+|.+... ..
T Consensus 53 ~~g~~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~ 122 (206)
T 1jjv_A 53 HFGAQI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTA 122 (206)
T ss_dssp HHCTTC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGG
T ss_pred HhCHHH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHh
Confidence 667431 14678999999999988888754433 34566776777777676543 4688888987655 45
Q ss_pred hcCcCCCcEEEEEEC
Q 048654 682 VCDDEERSEIWVVEN 696 (723)
Q Consensus 682 ~~d~~~~drv~vl~~ 696 (723)
.| |.+++++-
T Consensus 123 ~~-----d~vi~l~~ 132 (206)
T 1jjv_A 123 LC-----DRILVVDV 132 (206)
T ss_dssp GC-----SEEEEEEC
T ss_pred hC-----CEEEEEEC
Confidence 56 48888853
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.16 E-value=8.8e-07 Score=96.19 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----------CCcceEEECCceeEEEEcc-ccccccCccccHHHH---HHhhC--
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS-----------PTEGEVRRSQKLRIGRYSQ-HFVDLLTMEETPVSY---LLRLH-- 587 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~-----------p~~G~I~~~~~~~ig~~~q-~~~~~~~~~~~~~~~---~~~~~-- 587 (723)
+++|+|+||||||||++.|+|... |+.|.|.+.+. .+-.+.- .+...++ ...++. .+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~-~v~l~DT~G~i~~lp--~~lve~f~~tl~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR-KIMLVDTVGFIRGIP--PQIVDAFFVTLSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE-EEEEEECCCBCSSCC--GGGHHHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE-EEEEEeCCCchhcCC--HHHHHHHHHHHHHHHh
Confidence 399999999999999999999875 55677777653 2211110 0000000 000110 00000
Q ss_pred C-------CCCCCc--HH---HHHHHHHHhCCCCCCC---CcCCCCCCCHHHHHHHHHH----HHH-ccCCCeEEeccCC
Q 048654 588 P-------DQEGLS--KQ---EAVRAKLGKFGLPSHN---HLTPIAKLSGGQKARVVFT----SIS-MSKPHILLLDEPT 647 (723)
Q Consensus 588 ~-------~~~~~~--~~---~~~~~~L~~~gl~~~~---~~~~i~~LSGGqkqRv~lA----ral-~~~p~lLlLDEPT 647 (723)
. +..... .. ..+..+|..+++.... ...++..+|+|+++++.++ +.+ ..+|++ +||
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~ 333 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPI 333 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EEC
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEE
Confidence 0 000111 11 1245667777764321 0234567898988888877 555 434444 899
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 048654 648 NHLDMQSIDALADALDEF 665 (723)
Q Consensus 648 ~~LD~~s~~~l~~~L~~~ 665 (723)
|++|......|.+.|.+.
T Consensus 334 SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQL 351 (364)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHH
Confidence 999999999999888764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-06 Score=86.55 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=29.9
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 518 VGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 518 l~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36789999999999999999999999999977655
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.13 E-value=7e-08 Score=97.92 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=39.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeee
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ 229 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q 229 (723)
.|+++|+...|+. +|+|.+ ++++|+|||||||||||++|+|+..|..|. |.+.+.
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~--i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTL--LHFRNT 63 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTT--C-----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCe--EEECCE
Confidence 4788888765532 566666 899999999999999999999987665554 444443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=5.3e-08 Score=95.41 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=32.5
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 328 RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 328 RvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
.+.+|++|+.+|.++++| ||+||..++..+++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999888754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=5.7e-06 Score=89.51 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=32.6
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCcceEE
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVR 555 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G--l~~p~~G~I~ 555 (723)
+|+++++++. .|+|+|++|||||||++.|+| ++++..|.+.
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 6888998888 899999999999999999999 6677777664
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=4.2e-07 Score=89.88 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=39.8
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE
Q 048654 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222 (723)
Q Consensus 169 ~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~ 222 (723)
+|+++.++.....+.+++..++|++++|+||||||||||+++|++.+. .+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 467888888888899999999999999999999999999999998643 33433
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.06 E-value=3.6e-07 Score=96.78 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=24.7
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
+.+|++++|+||||+|||||+|+|+|+..|..|.|..
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 4579999999999999999999999999999999986
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.2e-06 Score=86.56 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=41.3
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 331 LAR-ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 331 LAr-AL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
.|+ +++.+|.+++|||||+++|..+...|.+.|.....- +.++| .. ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~--~~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSK--EP--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGG--ST--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhh--cc--CCceEEEECCC
Confidence 456 788899999999999999998888787777644211 24456 22 46899988763
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.5e-06 Score=88.29 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc-CcEEEEEeC
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL-CRW-KKTLVVVSH 375 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L-~~~-~~TVIivsH 375 (723)
.||.++.+|+..|...+.+++|+|.|+|... +.......+.+ ++. +..+|||.|
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999999999999999999999999998654 44444333333 344 567777753
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-07 Score=91.11 Aligned_cols=53 Identities=23% Similarity=0.242 Sum_probs=39.2
Q ss_pred EEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 499 IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 499 ~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
+|++..++. ....+.+++..++|++++|+||||||||||+++|++.+. ..|.+
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 355665543 235677888889999999999999999999999999987 67876
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.8e-05 Score=82.78 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=75.2
Q ss_pred cCc--EEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHH
Q 048654 522 MGT--RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV 599 (723)
Q Consensus 522 ~Ge--~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (723)
.+. .+.|+||+|+|||||++.+++.+.+..+ ..+.++... .. .+ ....+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~--~~----~~----------------~~~~~ 91 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGF--IY----RN----------------FTAII 91 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETT--TC----CS----------------HHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCc--cC----CC----------------HHHHH
Confidence 346 8999999999999999999998776431 111222110 00 01 11223
Q ss_pred HHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH-ccCCCeEEeccCCCCCCHHHHHHHHHHHHHc------CceEEEE
Q 048654 600 RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS-MSKPHILLLDEPTNHLDMQSIDALADALDEF------TGGVVLV 672 (723)
Q Consensus 600 ~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral-~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~------~~tVIiv 672 (723)
..++..++... +....+.++.......... ..+|.||+|||+... |......|..++.++ +..||++
T Consensus 92 ~~l~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 92 GEIARSLNIPF-----PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp HHHHHHTTCCC-----CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred HHHHHHhCccC-----CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 33444555421 1123444443332221111 245889999999876 988888888888543 4579999
Q ss_pred ecCHHHHHHh
Q 048654 673 SHDSRLISRV 682 (723)
Q Consensus 673 SHD~~~~~~~ 682 (723)
||+.++...+
T Consensus 166 ~~~~~~~~~l 175 (389)
T 1fnn_A 166 GHNDAVLNNL 175 (389)
T ss_dssp ESSTHHHHTS
T ss_pred ECCchHHHHh
Confidence 9998765544
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.02 E-value=1e-05 Score=87.49 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=48.1
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhh-c-CcEEEEEe--CCHH
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLD-EPTNHLDLRAVLWLEEYLCR-W-KKTLVVVS--HDRD 378 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLD-EPT~~LD~~~~~~L~~~L~~-~-~~TVIivs--Hdl~ 378 (723)
.++..+|+|++|++. +.+...++-|+++| +|++++|......+...+.. . +..+|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 566789999998876 66666788899999 99999999887666555554 3 57788888 8874
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.4e-06 Score=84.23 Aligned_cols=37 Identities=27% Similarity=0.151 Sum_probs=23.9
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
...++||||++.+|++++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999964
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-06 Score=83.50 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.9
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 186 VRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 186 l~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
++|.+|++++|+||||||||||+++|++.+.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46889999999999999999999999998643
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.5e-05 Score=83.11 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=36.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCcEEEEEeCCHHHHHhhC
Q 048654 337 VQPTLLLLDEPTNHLDLRAVLWLEEYLCR------WKKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 337 ~~P~lLLLDEPT~~LD~~~~~~L~~~L~~------~~~TVIivsHdl~~l~~ia 384 (723)
..|.||+|||+... |......|..++.+ .+.+||+++|+.++...+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 98888888888753 3568999999987665543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-06 Score=83.22 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=29.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CcceEE
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVR 555 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-~~G~I~ 555 (723)
.+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 36899999999999999999999998874 455554
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.1e-06 Score=83.51 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=24.8
Q ss_pred ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 510 ~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
...++||||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999765
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-06 Score=99.81 Aligned_cols=42 Identities=26% Similarity=0.213 Sum_probs=37.2
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCC
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK 220 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~ 220 (723)
.++++++|.+.+|+.++|+|||||||||||++|+|+..+..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g 289 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK 289 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC
Confidence 467899999999999999999999999999999998755433
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-05 Score=83.59 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=25.6
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
-|++|+++.|.||+|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998864
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.3e-05 Score=81.76 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=31.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeee
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ 229 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q 229 (723)
-|++|+++.|+||||||||||+..|++...+ ..+.+.|++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~ 97 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDA 97 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEec
Confidence 3889999999999999999999999865322 2234555543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.2e-06 Score=82.57 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.+...+|++++|+||||||||||+++|+|.+ |.+.+++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 3556789999999999999999999999976 7776554
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.4e-05 Score=85.66 Aligned_cols=126 Identities=14% Similarity=0.209 Sum_probs=74.6
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCC
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (723)
|+.+.--+.+|+.+.|.|++|+|||||+..|+.......+ .+.|++-. ........
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~--------~Vl~fSlE--------ms~~ql~~-------- 91 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR--------GVAVFSLE--------MSAEQLAL-------- 91 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------EEEEEESS--------SCHHHHHH--------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC--------eEEEEeCC--------CCHHHHHH--------
Confidence 5555556899999999999999999999888764332111 23444321 11111110
Q ss_pred CcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHH-HHc-CceEE
Q 048654 593 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL-DEF-TGGVV 670 (723)
Q Consensus 593 ~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L-~~~-~~tVI 670 (723)
++......+++... +. +.||.++++|+..|...+.+++|+|.|+|... +.........+ ++. +..+|
T Consensus 92 -----Rlls~~~~v~~~~l---~~-g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lI 160 (338)
T 4a1f_A 92 -----RALSDLTSINMHDL---ES-GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIA 160 (338)
T ss_dssp -----HHHHHHHCCCHHHH---HH-TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEE
T ss_pred -----HHHHHhhCCCHHHH---hc-CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEE
Confidence 11111111221110 11 47999999999999999999999999998644 44444433333 333 34555
Q ss_pred EEe
Q 048654 671 LVS 673 (723)
Q Consensus 671 ivS 673 (723)
||-
T Consensus 161 VID 163 (338)
T 4a1f_A 161 FID 163 (338)
T ss_dssp EEE
T ss_pred EEe
Confidence 553
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=86.31 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=43.6
Q ss_pred HHHHHHHhCCCCccc---cCCCCCCCChHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 299 QASKILAGLGFTKEM---QGRPTKSFSGGWRMRISLA----RAL-FVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 299 ~~~~~L~~lgl~~~~---~~~~~~~LSGGqrQRvaLA----rAL-~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
.+.++|..+++.... ...++..+|+|+++|+.++ +++ ..+|++ +|+|++|..+...|.+.|.+
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 345667776653211 1244667898988988877 666 444554 89999999999888887764
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4e-05 Score=81.67 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=25.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
-|++|+++.|.|++|+|||||+..|+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4889999999999999999999998853
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.84 E-value=3e-06 Score=87.14 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=33.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHH---cCCCCCcceEE
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLA---GDLSPTEGEVR 555 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~---Gl~~p~~G~I~ 555 (723)
.+|++++|+||||||||||+++|+ |+..+++|.|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999987
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=4.5e-06 Score=88.20 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=27.5
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEE
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL 226 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~ 226 (723)
+..|++++|+|||||||||||++|+|+..|.. |.|.+
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~--G~i~~ 202 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRV--SEVSE 202 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccc--cceec
Confidence 44689999999999999999999999876544 44443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=1e-05 Score=78.54 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.+|++++|+||||||||||+++|++..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999864
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.3e-06 Score=93.06 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=46.5
Q ss_pred EEEEeCCeeeeEeeeEEEeCCc------EEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee
Q 048654 171 FSVAARGKELLKSTSVRISHGK------RYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230 (723)
Q Consensus 171 ls~~y~~~~vL~~isl~i~~Ge------~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~ 230 (723)
+++.|++...|.+++..|..+. ++||+||||||||||+++|+++....++.+.+.++..+
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 4555777788888888888877 99999999999999999999876544445555555443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=79.63 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=24.5
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.++..+|++++|+|+||||||||+++|++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3667889999999999999999999999863
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.5e-05 Score=79.24 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=27.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
.+|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.73 E-value=6.9e-06 Score=81.23 Aligned_cols=37 Identities=27% Similarity=0.185 Sum_probs=33.5
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
..+|.+++|+|+||||||||+++|++.+++..|.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 5689999999999999999999999999888888754
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.72 E-value=6.7e-05 Score=83.00 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=30.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
++.+++|+|+|||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998877666643
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-05 Score=81.63 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=31.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
...+|++++|+|+||||||||+++|+|+ .|.|.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999999999998 67776544
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=8.8e-07 Score=90.72 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=41.8
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.+++++.+.|++..+++++++++++| ++|+||||||||||+++|++..
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 44566777777778999999999999 9999999999999999999864
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.70 E-value=2e-05 Score=84.68 Aligned_cols=128 Identities=15% Similarity=0.209 Sum_probs=69.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHH
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR 600 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (723)
..+..+.|+||+|+|||||++.+++.+.+..|. ...+.++.-. .. . . ......
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~--~~-~---~----------------~~~~~~ 95 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTR--QI-D---T----------------PYRVLA 95 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHH--HH-C---S----------------HHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECC--CC-C---C----------------HHHHHH
Confidence 457789999999999999999999876543321 0111122100 00 0 0 111222
Q ss_pred HHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH--ccCCCeEEeccCCCCCC---HHHHHHHHHHHHHc---CceEEEE
Q 048654 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS--MSKPHILLLDEPTNHLD---MQSIDALADALDEF---TGGVVLV 672 (723)
Q Consensus 601 ~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral--~~~p~lLlLDEPT~~LD---~~s~~~l~~~L~~~---~~tVIiv 672 (723)
.++..++... +....+..+...... .++ ...|.||++||+....+ ......+.+.+..+ +..+|++
T Consensus 96 ~i~~~l~~~~-----~~~~~~~~~~~~~l~-~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 96 DLLESLDVKV-----PFTGLSIAELYRRLV-KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHTTTTSCCC-----CSSSCCHHHHHHHHH-HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHhCCCC-----CCCCCCHHHHHHHHH-HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 3333344321 112344444222222 222 23388999999987653 33445555555432 3578999
Q ss_pred ecCHHHHHH
Q 048654 673 SHDSRLISR 681 (723)
Q Consensus 673 SHD~~~~~~ 681 (723)
||+..+...
T Consensus 170 ~~~~~~~~~ 178 (386)
T 2qby_A 170 TNDVKFVDL 178 (386)
T ss_dssp ESCGGGGGG
T ss_pred ECCCChHhh
Confidence 998865443
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.4e-05 Score=81.97 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=24.4
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 175 y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
++...++++.+ .+|++++|+||||||||||+++|+
T Consensus 14 ~~~~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 14 FPGRLERPHMT---AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp ---------CT---TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CcchhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHH
Confidence 34444555554 789999999999999999999999
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00022 Score=76.94 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=31.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
-|.+|+++.|+||||||||||+..|++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 478999999999999999999999998877666654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.7e-05 Score=83.60 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCcEEEEEeCCHHHHHhh
Q 048654 339 PTLLLLDEPTNHLD---LRAVLWLEEYLCR---WKKTLVVVSHDRDFLNTV 383 (723)
Q Consensus 339 P~lLLLDEPT~~LD---~~~~~~L~~~L~~---~~~TVIivsHdl~~l~~i 383 (723)
|.||+|||+...++ ......|.+.+.. .+.++|++||+..+...+
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 88999999988663 3445555555532 246899999998754443
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0061 Score=78.25 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=24.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
|.+|.++.|.||+|+|||||+..++...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987776543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.7e-05 Score=82.70 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH-HHHHHhhcCcE--EEEEeC
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLW-LEEYLCRWKKT--LVVVSH 375 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~-L~~~L~~~~~T--VIivsH 375 (723)
||.++.+|+..|...+.++++++.|+|. +++..... +..+.++.+.. +|||.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8899999999999999999999999986 44444333 23333344556 888876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=9.3e-05 Score=79.91 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.0
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
..+|++++++++ .++|||++|||||||++.|+|..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCC
Confidence 458999999998 89999999999999999999953
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.67 E-value=4.1e-06 Score=88.64 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=24.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK 220 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~ 220 (723)
+.+|++++|+||||+|||||+|+|+|...+..|
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G 202 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTN 202 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccccc
Confidence 447999999999999999999999987654433
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.1e-06 Score=91.43 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=40.8
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 167 TIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 167 ~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
+++++.+.|+...+|++++|++++| ++|+||||||||||+++|++..
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 3456666677778899999999999 9999999999999999999864
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.67 E-value=6.4e-06 Score=89.72 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=34.8
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
..+|+++++.+++|++++|+||||||||||+++|+|.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3689999999999999999999999999999999985
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.67 E-value=7.1e-06 Score=87.49 Aligned_cols=44 Identities=25% Similarity=0.199 Sum_probs=39.8
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
+.+++|.+.+|++++|+|+||+||||++..|++.+.+..|+|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36788889999999999999999999999999999988888865
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.66 E-value=1.7e-05 Score=78.54 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=26.9
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999876
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.65 E-value=2.5e-05 Score=77.59 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
++|++++|+||||||||||++.|++.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998754
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=9.3e-06 Score=82.99 Aligned_cols=57 Identities=28% Similarity=0.384 Sum_probs=45.0
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.+++++.+.|.. ..++++++|++.+| ++|+||||||||||+++|++.+. .|.|.+.+
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 345566666643 24789999999999 99999999999999999999875 67776543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.62 E-value=7.6e-06 Score=87.17 Aligned_cols=156 Identities=16% Similarity=0.087 Sum_probs=80.8
Q ss_pred cceeceEEEEecCc------EEEEEcCCCCcHHHHHHHHHcCCC--CCcceEEECCceeEEEEccccccccCccccHHHH
Q 048654 511 FKLSDVDVGIDMGT------RVAIVGPNGAGKSTLLNLLAGDLS--PTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSY 582 (723)
Q Consensus 511 ~~L~~isl~i~~Ge------~vaIvGpNGsGKSTLlk~L~Gl~~--p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~ 582 (723)
..|.+++..+..+. ++||+||||||||||+++|.+++. |..|.| +.+.++-+ .........
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v--------~~i~~D~f---~~~~~~l~~ 142 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV--------EVITTDGF---LYSNAKLEK 142 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE--------EEEEGGGG---BCCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE--------EEEeeccc---ccchhhhhh
Confidence 35667777776665 999999999999999999999987 455554 33333211 011010100
Q ss_pred --HHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHH--HHH
Q 048654 583 --LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI--DAL 658 (723)
Q Consensus 583 --~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~--~~l 658 (723)
....+... ...+...+.+.|..+.-.......| .+|.+..+|+..+...+..|+|||++-|..-.|.... ..=
T Consensus 143 ~~~~~~~g~P-~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~ 219 (321)
T 3tqc_A 143 QGLMKRKGFP-ESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQL 219 (321)
T ss_dssp TTCGGGTTSG-GGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSC
T ss_pred HHHHhhccCc-ccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEccccccccccccccch
Confidence 00000000 0012233444444432211011223 2444444444333445678999999999887775200 000
Q ss_pred HHHHHHcCceEEEEecCHHHHH
Q 048654 659 ADALDEFTGGVVLVSHDSRLIS 680 (723)
Q Consensus 659 ~~~L~~~~~tVIivSHD~~~~~ 680 (723)
...+..+...+|+|.-+.+...
T Consensus 220 ~~~l~~~~D~~I~Vda~~d~~~ 241 (321)
T 3tqc_A 220 QVFVSDFFDFSLFVDAQAQVIQ 241 (321)
T ss_dssp CCCGGGGCSEEEEEECCHHHHH
T ss_pred hhhhhhhcCeEEEEECCHHHHH
Confidence 0012233345777877766554
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.60 E-value=1.1e-05 Score=83.90 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=76.5
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~ig~ 564 (723)
.+++++.+.|.. ..++++++|.+.+| ++|+||||||||||+++|++.+. .|.|.+.+.. .+++
T Consensus 50 ~~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 50 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 345566666653 24789999999999 89999999999999999999875 6777654321 1223
Q ss_pred Eccccc---cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 565 YSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 565 ~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
++|... ..+.+.+.. ..+........+. ........+.. .+..|||||+||+.|++++..+|++
T Consensus 124 ~~~~~~~~~~~i~~iDei-d~l~~~~~~~~~~-~~~~~~~~~~~----------ll~~lsgg~~~~~~i~~a~t~~p~~- 190 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEI-DAVGRKRGSGVGG-GNDEREQTLNQ----------LLVEMDGFEKDTAIVVMAATNRPDI- 190 (278)
T ss_dssp HHHHHHTSCSEEEEEETH-HHHHCC---------CHHHHHHHHH----------HHHHHTTCCTTCCEEEEEEESCTTS-
T ss_pred HHHHHHhcCCcEEehhhh-HhhhcccccccCC-cchHHHHHHHH----------HHHHHhCCCCCCCEEEEEecCCchh-
Confidence 333211 011111111 1111000000000 00111111111 1246899999999999999999987
Q ss_pred EeccCC
Q 048654 642 LLDEPT 647 (723)
Q Consensus 642 lLDEPT 647 (723)
||++.
T Consensus 191 -ld~~l 195 (278)
T 1iy2_A 191 -LDPAL 195 (278)
T ss_dssp -SCHHH
T ss_pred -CCHhH
Confidence 67664
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00021 Score=78.95 Aligned_cols=39 Identities=31% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~ 230 (723)
++.+++|+|+|||||||++..|++.+.. ...++.+++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecC
Confidence 5789999999999999999999976432 23355555543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.9e-05 Score=81.02 Aligned_cols=38 Identities=11% Similarity=-0.094 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHH
Q 048654 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLAR 333 (723)
Q Consensus 296 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLAr 333 (723)
...++.++|+.++|.....++++..|||.+++++.|||
T Consensus 263 ~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 263 PGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp TTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34578999999999754557889999999999999986
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.58 E-value=5.6e-05 Score=83.45 Aligned_cols=51 Identities=16% Similarity=-0.014 Sum_probs=41.6
Q ss_pred EEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 500 ~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
++++.|++.. .+++|+ +|++++|+|+|||||||++..|++.+.+..|+|.+
T Consensus 81 ~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 81 ALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4555565421 567777 89999999999999999999999999998888764
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=2.7e-05 Score=74.66 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.+|++++|+|+||||||||+++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 368999999999999999999999865 5555543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.54 E-value=3e-05 Score=73.99 Aligned_cols=28 Identities=43% Similarity=0.541 Sum_probs=25.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999997654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.53 E-value=1.8e-05 Score=90.40 Aligned_cols=40 Identities=38% Similarity=0.362 Sum_probs=35.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-eEE-ECC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG-EVR-RSQ 558 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G-~I~-~~~ 558 (723)
.+.+|++++|+|+||||||||+++|+|.+.|++| .|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999887 674 554
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.53 E-value=1.3e-05 Score=84.59 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHc--cCCCeEEeccCCCCCCHHH-HHHHHHHHHHc----Cc--eEEEEecCHHHHHHhc
Q 048654 620 LSGGQKARVVFTSISM--SKPHILLLDEPTNHLDMQS-IDALADALDEF----TG--GVVLVSHDSRLISRVC 683 (723)
Q Consensus 620 LSGGqkqRv~lAral~--~~p~lLlLDEPT~~LD~~s-~~~l~~~L~~~----~~--tVIivSHD~~~~~~~~ 683 (723)
+|+|++ .+++.+. ..|.||++ |.+|... ...+.+.+.++ +. .+.+++|+..-+..++
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~ 166 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA 166 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHH
Confidence 898886 4556665 67889998 8899865 55555555543 32 4555667665555554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=80.11 Aligned_cols=57 Identities=14% Similarity=-0.035 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHH
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFL 380 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l 380 (723)
.+.+...++...+.+++++|+.-....-....-.++.++|++.+..+|+|.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777788888889998888776554333445678888888788888887765543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0002 Score=76.91 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.|++|+++.|.||+|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00032 Score=89.83 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=27.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
-|.+|+++.|.|++|+|||||+..++.....
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~ 758 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4889999999999999999999988875543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=3.1e-05 Score=78.21 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=26.8
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.+..+|++++|+|+||||||||+++|+|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345578999999999999999999999986
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=1.1e-05 Score=94.33 Aligned_cols=131 Identities=17% Similarity=0.121 Sum_probs=69.6
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC---
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP--TEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE--- 591 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p--~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~--- 591 (723)
++.+.+|..++|+|+||+|||||++.|++...+ ..|+| ..+.. ..+ ....+. .+......
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~--------~~d-----~~~~e~-~~giti~~~~~ 67 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTT--------TTD-----YTPEAK-LHRTTVRTGVA 67 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCC--------SSC-----CSHHHH-HTTSCCSCEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcc--------ccc-----CCHHHH-hcCCeEEecce
Confidence 456788999999999999999999999976654 45665 22110 000 000000 00000000
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEE
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVL 671 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIi 671 (723)
..... . ..+.| .+.| +.-. -.......+-..+.-+|++| |+.+++..+.. ++..+...+..+|+
T Consensus 68 ~~~~~----~--~~~nl----iDTp-G~~~---f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~~~~ip~il 131 (665)
T 2dy1_A 68 PLLFR----G--HRVFL----LDAP-GYGD---FVGEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAERLGLPRMV 131 (665)
T ss_dssp EEEET----T--EEEEE----EECC-CSGG---GHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHHHTTCCEEE
T ss_pred EEeeC----C--EEEEE----EeCC-Cccc---hHHHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHHHccCCEEE
Confidence 00000 0 00111 1111 1000 01223333445678899999 99999988774 44555566778889
Q ss_pred EecCHHH
Q 048654 672 VSHDSRL 678 (723)
Q Consensus 672 vSHD~~~ 678 (723)
|.|.++.
T Consensus 132 v~NKiD~ 138 (665)
T 2dy1_A 132 VVTKLDK 138 (665)
T ss_dssp EEECGGG
T ss_pred EecCCch
Confidence 9998875
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00055 Score=71.26 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhc-------CcEEEEEeCCHH
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDL----------RAVLWLEEYLCRW-------KKTLVVVSHDRD 378 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~----------~~~~~L~~~L~~~-------~~TVIivsHdl~ 378 (723)
++++..|..+..+...+|.+|++||+.+-++. .....|...+... +..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46778888888888899999999999887653 2233444545443 135777888754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=6.3e-05 Score=70.93 Aligned_cols=29 Identities=38% Similarity=0.568 Sum_probs=24.4
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
+..+.+.+| +++|+||||||||||+.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445566665 99999999999999999997
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00062 Score=75.09 Aligned_cols=57 Identities=25% Similarity=0.261 Sum_probs=42.9
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 169 ~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
+++++.|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+. .+.+.+++.++
T Consensus 80 ~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 80 EALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred HHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 45666676544 678887 89999999999999999999999876433 34566665543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00017 Score=76.77 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=25.4
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.|.+|+++.|.||+|+|||||+..|+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=5.9e-05 Score=72.23 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+|++++|+|+||||||||+++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999999999975
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00038 Score=70.24 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=31.3
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC-----ceEEEEec-CH
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFT-----GGVVLVSH-DS 676 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-----~tVIivSH-D~ 676 (723)
..+++++|+..+.+.++......+..++..++ -.||+++| |.
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 35789999999998888877776666665443 37888898 54
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=7.6e-05 Score=70.36 Aligned_cols=31 Identities=42% Similarity=0.582 Sum_probs=25.3
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
+.+..+++.+| +.+|+||||||||||+.+|.
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556666655 89999999999999999986
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.42 E-value=6.3e-05 Score=74.41 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=25.7
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
|+...+|++++|+||||||||||++.|++..
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3445589999999999999999999999864
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00012 Score=77.58 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=71.1
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
.|+.+.--+.+|+++.|.|++|+|||||+..++...-- .| ..+.|+.-. .......
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~slE--------~s~~~l~-------- 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSLE--------MGKKENI-------- 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEESS--------SCHHHHH--------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEECC--------CCHHHHH--------
Confidence 46666556899999999999999999998887643211 12 123444311 1111110
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHH-HHHHcCce--
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD-ALDEFTGG-- 668 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~-~L~~~~~t-- 668 (723)
.++......+.+.... ..-..||+++++|+..|...+.++++++.|+|. +++........ +..+.+..
T Consensus 113 -----~R~~~~~~~i~~~~l~--~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~ 183 (315)
T 3bh0_A 113 -----KRLIVTAGSINAQKIK--AARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRV 183 (315)
T ss_dssp -----HHHHHHHTTCCHHHHH--SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCE
T ss_pred -----HHHHHHHcCCCHHHHh--cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCe
Confidence 0111111111111110 100128888889988888888888888888886 34444333222 22333444
Q ss_pred EEEEec
Q 048654 669 VVLVSH 674 (723)
Q Consensus 669 VIivSH 674 (723)
+|||-|
T Consensus 184 lVVID~ 189 (315)
T 3bh0_A 184 IVMIDY 189 (315)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 666643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=6.3e-05 Score=71.71 Aligned_cols=26 Identities=42% Similarity=0.498 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.|.+++|+|+||||||||+++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999999863
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.40 E-value=2.1e-05 Score=85.02 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=46.4
Q ss_pred eEEEEEEEEEcCCCccccee--------------ceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 495 LLQLIEVSFSYPNREDFKLS--------------DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~--------------~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
-+.++|+++.|+.. ...|+ |+.+.|.+|++++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 46788999999865 45788 899999999999999999999999999998865
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.40 E-value=2e-05 Score=85.26 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=45.3
Q ss_pred ceEEEeEEEEeCC-eeeeE--------------eeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 165 DITIDNFSVAARG-KELLK--------------STSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 165 ~I~l~nls~~y~~-~~vL~--------------~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.++|+++.|+. +.+|+ |+.+.|.+|++++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4778899999975 56898 89999999999999999999999999999875
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00031 Score=73.20 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHccCCCeEEeccCCCCCCH----------HHHHHHHHHHHHcC-------ceEEEEecCHH
Q 048654 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDM----------QSIDALADALDEFT-------GGVVLVSHDSR 677 (723)
Q Consensus 621 SGGqkqRv~lAral~~~p~lLlLDEPT~~LD~----------~s~~~l~~~L~~~~-------~tVIivSHD~~ 677 (723)
++++..+..+..+...+|.+|++||+.+-++. .....+...+..+. ..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46788888888888899999999999876553 22334555555542 23777888653
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00024 Score=79.01 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=31.4
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHhh---cCcEEEEEeCCH
Q 048654 337 VQPTLLLLDEPTNHLDL-RAVLWLEEYLCR---WKKTLVVVSHDR 377 (723)
Q Consensus 337 ~~P~lLLLDEPT~~LD~-~~~~~L~~~L~~---~~~TVIivsHdl 377 (723)
.+|+|||+||+..-.+. .....|...+.. .+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 566667776654 357899999973
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.37 E-value=1.8e-05 Score=84.97 Aligned_cols=46 Identities=26% Similarity=0.193 Sum_probs=40.7
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
.+++++++.+..|.+++|+|+||+|||||++.|+|.+.+..|+|.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3678889999999999999999999999999999998877777643
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00098 Score=71.91 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
|++|+++.|.|++|+|||||+..++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999988774
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=5.4e-05 Score=88.53 Aligned_cols=47 Identities=11% Similarity=-0.042 Sum_probs=35.9
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHH
Q 048654 331 LARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDF 379 (723)
Q Consensus 331 LArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~ 379 (723)
...+-..+..+|++| |+.++++.+..++.. +...+.++|++.|.++.
T Consensus 92 ~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 92 RGALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGG
T ss_pred HHHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCch
Confidence 334446788999999 999999988865544 45567888889998875
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00094 Score=67.33 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=30.7
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CcEEEEEeC
Q 048654 336 FVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW-----KKTLVVVSH 375 (723)
Q Consensus 336 ~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~-----~~TVIivsH 375 (723)
..+|+++|+..+.+.++.....++..++..+ ..+||+++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 3478999999999999887777776665433 248888888
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.31 E-value=7e-05 Score=73.86 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=26.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
..+|.+++|+|+||||||||+++|++...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999999998643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.28 E-value=9.8e-05 Score=74.69 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=31.3
Q ss_pred eeceEEEEe---cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEE
Q 048654 513 LSDVDVGID---MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555 (723)
Q Consensus 513 L~~isl~i~---~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~ 555 (723)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 667777776 8999999999999999999999999887 66654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00025 Score=70.29 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=24.9
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
+.++.+.+| +++|+||||||||||+.+|..
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 445666665 999999999999999999973
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00011 Score=72.40 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=27.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
++.+|.+++|+|++|||||||+++|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999999999864
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=4e-05 Score=76.53 Aligned_cols=34 Identities=38% Similarity=0.577 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC---CCCcceEEE
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL---SPTEGEVRR 556 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~---~p~~G~I~~ 556 (723)
+.+++|+||+||||||++++|++.+ .++.|.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999765 566777654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.25 E-value=5.7e-05 Score=80.44 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=39.2
Q ss_pred eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 180 vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
++.+++|++.+|++++|+|+||+||||++..|++.+.+ ..++|.+++.++
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 34688999999999999999999999999999987543 345666665543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.24 E-value=5.7e-06 Score=88.93 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=42.4
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
++.+++.+.|+.+.+++++++.+.+|.+++|+|+||+|||||++.|++...
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 344455556666778999999999999999999999999999999997643
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00011 Score=72.37 Aligned_cols=29 Identities=34% Similarity=0.275 Sum_probs=26.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
++.+|.+++|+|++|||||||+++|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999763
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00011 Score=79.10 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=30.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
.+.+++|+|++|||||||++.|+|.+.+..|+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 56789999999999999999999988877777643
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00039 Score=77.23 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=31.1
Q ss_pred cCCCeEEeccCCCCCCH-HHHHHHHHHHHHc---CceEEEEecC
Q 048654 636 SKPHILLLDEPTNHLDM-QSIDALADALDEF---TGGVVLVSHD 675 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~-~s~~~l~~~L~~~---~~tVIivSHD 675 (723)
.+|+|||+||+..-.+. .....+...+..+ +..||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999877664 5677777777654 3578889987
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00014 Score=69.99 Aligned_cols=31 Identities=35% Similarity=0.382 Sum_probs=26.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
.+|.+++|+|++||||||++++|++.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36899999999999999999999998765 44
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0005 Score=67.06 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=30.5
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 329 ISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 329 vaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
...|++|+.+|.++++| |++||..++..+++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999888877754
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0011 Score=70.26 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=24.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
-|++|+++.|.|++|+|||||+..|+.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999998874
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00012 Score=83.58 Aligned_cols=31 Identities=39% Similarity=0.421 Sum_probs=28.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
.+.+|++++|+|+||||||||+++|+|...+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4679999999999999999999999987654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00035 Score=69.20 Aligned_cols=31 Identities=42% Similarity=0.582 Sum_probs=24.9
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
+.+.++.+.+| +.+|+||||||||||+.+|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34556666654 89999999999999999885
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00028 Score=71.28 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=26.2
Q ss_pred eEeeeEEEe---CCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 181 LKSTSVRIS---HGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 181 L~~isl~i~---~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
|.++||.+. .|.+++|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566677776 899999999999999999999997643
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0001 Score=84.14 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=44.2
Q ss_pred EEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC
Q 048654 498 LIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS 557 (723)
Q Consensus 498 ~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~ 557 (723)
++++...|.. ..++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|...
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 3444444532 23577888888 899999999999999999999999998877776543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00037 Score=69.41 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=22.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.+++|+|++||||||++++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999974
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00045 Score=66.35 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+|.+++|+|++||||||++++|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999975
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00021 Score=70.91 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=31.0
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 518 VGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 518 l~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
+.+.+|.+++|+|++||||||+.+.|++.+.|..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 34678999999999999999999999998887667
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00044 Score=67.00 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=26.3
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|++...|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999853
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=8.1e-05 Score=80.60 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=37.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
.+.+.|++..|+.+.++++++|+| +|||+||+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 578889988898889999999987 9999999999999999987643
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00051 Score=67.30 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|+|||||||++++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00051 Score=67.32 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0068 Score=65.52 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
-|++|+++.|.|+.|+|||||+..|+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHH
Confidence 37899999999999999999998776
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.004 Score=67.12 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=24.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+.+|.++.|.|++|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998877543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00042 Score=67.03 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=30.3
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
..+|.++.|+|++||||||+.+.|++.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 35789999999999999999999999887666655
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00065 Score=65.79 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=26.4
Q ss_pred ceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 515 ~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
++|+....|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00034 Score=68.44 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=30.5
Q ss_pred EEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 502 s~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
++.|++- ..+++++||..+.+ .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4456543 34788999888777 578999999999999999987
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00068 Score=66.72 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
...+|.+++|+||+|||||||++.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999998653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00086 Score=63.93 Aligned_cols=26 Identities=54% Similarity=0.726 Sum_probs=23.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0031 Score=65.77 Aligned_cols=31 Identities=35% Similarity=0.534 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
..+.|+||+|+|||||+++|++.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4789999999999999999999887665543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.70 E-value=5.6e-05 Score=86.36 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=39.9
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 168 l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
++++.+.|....++.++++++ +|++++|+||||+|||||+++|++..
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 455666666667888889888 89999999999999999999999864
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=64.41 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=20.7
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 578899988776 789999999999999999997
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00022 Score=75.08 Aligned_cols=52 Identities=23% Similarity=0.111 Sum_probs=40.7
Q ss_pred EEEEEcCCCcccceec-eEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 500 EVSFSYPNREDFKLSD-VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 500 ~ls~~y~~~~~~~L~~-isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
++...|++.. .+ ++|+++ |.+++|+|+||+||||++..|++.+.+..|+|.+
T Consensus 79 ~l~~~~~~~~----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 79 ELSNLFGGDK----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHTTCSC----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHhcccc----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 3444565321 45 777766 9999999999999999999999999887777754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00083 Score=64.05 Aligned_cols=27 Identities=44% Similarity=0.599 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.+|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0061 Score=67.61 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=73.9
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
.|+.+.--+.+|+++.|.|++|+|||||+..|+.......| ..+.|+.-. ...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-------~~vl~~slE--------~~~------------ 241 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-------VGVGIYSLE--------MPA------------ 241 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCEEEEESS--------SCH------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CeEEEEECC--------CCH------------
Confidence 35555556899999999999999999999888764332112 123333211 111
Q ss_pred CCcHHHHHHHHH-HhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHH-HHHHHcCceE
Q 048654 592 GLSKQEAVRAKL-GKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA-DALDEFTGGV 669 (723)
Q Consensus 592 ~~~~~~~~~~~L-~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~-~~L~~~~~tV 669 (723)
.+....++ ...++..... +. +.||..+.+|+.-|...+...++++.|+|. +++....... .+..+.+..+
T Consensus 242 ----~~l~~R~~~~~~~i~~~~l-~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~l 313 (444)
T 2q6t_A 242 ----AQLTLRMMCSEARIDMNRV-RL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGL 313 (444)
T ss_dssp ----HHHHHHHHHHHTTCCTTTC-CG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCE
T ss_pred ----HHHHHHHHHHHcCCCHHHH-hC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCE
Confidence 11111221 2234432211 12 468999999988887777778888888764 4444443333 3333444456
Q ss_pred EEEe
Q 048654 670 VLVS 673 (723)
Q Consensus 670 IivS 673 (723)
|||-
T Consensus 314 IvID 317 (444)
T 2q6t_A 314 IIID 317 (444)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6653
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00046 Score=77.72 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=42.5
Q ss_pred EEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 497 ~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
+++++...|.+ ..++.++++.+.+| +.|+||||+|||||+++|++... .+.|.+++
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 34445444543 23688999999998 89999999999999999999875 56665543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00068 Score=66.76 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=26.4
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998764
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00097 Score=72.76 Aligned_cols=40 Identities=30% Similarity=0.529 Sum_probs=32.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCcceEEECC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGD-----------LSPTEGEVRRSQ 558 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl-----------~~p~~G~I~~~~ 558 (723)
.+..|..++|+|+||+|||||++.|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467889999999999999999999998 567778776543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00018 Score=77.91 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=35.9
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcce
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~ 553 (723)
..+.+.+++..|+. ..++++++|+| +|+|++|+|||||++.|+|...+..|.
T Consensus 16 ~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 35778888888864 34788999876 999999999999999999876554443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00078 Score=72.45 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=24.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
..+.+++|+|++|||||||++.|+|...+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 35678999999999999999999986443
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0046 Score=68.57 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH-HHHHHHhhcCcEEEEEeC
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL-WLEEYLCRWKKTLVVVSH 375 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~-~L~~~L~~~~~TVIivsH 375 (723)
..||..+.+|+.-|...+...++++.|+|. +++.... .+..+.++.+..+|||.+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 469999999999888888888899999764 4444433 333444455667777764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0041 Score=65.60 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+..+.|.||+|+|||||++.|++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467899999999999999999864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0016 Score=72.22 Aligned_cols=36 Identities=39% Similarity=0.530 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC------------CCcceEEECCc
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLS------------PTEGEVRRSQK 559 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~------------p~~G~I~~~~~ 559 (723)
-.++|+|+||+|||||++.|+|... +..|.+.+.+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 3699999999999999999999854 55677776654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00035 Score=78.77 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=36.7
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 169 ~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
+++...|....+++++++.+++| +.|+||||+|||||+++|++..
T Consensus 44 ~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 44 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp HHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred HHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 34444455556788899999999 9999999999999999999864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0016 Score=61.35 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=63.92 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=21.2
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+++++++..+.. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 7799999999999999999974
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00027 Score=75.45 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=37.0
Q ss_pred EeCCeeeeEeeeEEEeCCcE--EEEECCCCccHHHHHHHHHhCC
Q 048654 174 AARGKELLKSTSVRISHGKR--YGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 174 ~y~~~~vL~~isl~i~~Ge~--~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.||...+++.++..|..|++ +.|.||+|+|||||+++|++..
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45667788889999999988 9999999999999999999753
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00026 Score=69.29 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.4
Q ss_pred EEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 172 SVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 172 s~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++.|++ ..+++++||..+.+ .++|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 445655 36899999988887 5789999999999999999853
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=62.79 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=61.37 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHhCC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.40 E-value=0.001 Score=69.99 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHhh----cC--cEEEEEeCCHHHHHhhCCEEE
Q 048654 321 FSGGWRMRISLARALF--VQPTLLLLDEPTNHLDLRA-VLWLEEYLCR----WK--KTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 321 LSGGqrQRvaLArAL~--~~P~lLLLDEPT~~LD~~~-~~~L~~~L~~----~~--~TVIivsHdl~~l~~iad~Ii 388 (723)
+|+|++ .+++.+. ..|.||++ |.+|... ...+.+.+.+ ++ ..+.+++|+-.-+..++|.|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 5566666 78999999 8999765 4444444432 34 256677777666666666554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0014 Score=64.09 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
..+++|+|++|||||||.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0088 Score=58.72 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=32.5
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRL 678 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~ 678 (723)
.+|.+|++||.-. ||......|...+.+.. ..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999765 88888888988887753 458888877653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0015 Score=62.68 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00051 Score=73.76 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=32.6
Q ss_pred ceeceEEEEecCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 048654 512 KLSDVDVGIDMGTR--VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 512 ~L~~isl~i~~Ge~--vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+++.+++.+.+|++ ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 67788888999999 9999999999999999999864
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00043 Score=74.29 Aligned_cols=36 Identities=36% Similarity=0.410 Sum_probs=32.0
Q ss_pred eeeEeeeEEEeCCcE--EEEECCCCccHHHHHHHHHhC
Q 048654 179 ELLKSTSVRISHGKR--YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~--~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+++.+++.+.+|++ ++|+|++|||||||.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 367788888899998 999999999999999999964
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=62.38 Aligned_cols=28 Identities=36% Similarity=0.298 Sum_probs=24.8
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
...+|.+++|+|++||||||+++.|+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999865
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0016 Score=63.68 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
..+|+|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0017 Score=64.29 Aligned_cols=30 Identities=33% Similarity=0.310 Sum_probs=26.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 186 VRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 186 l~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
+.+.+|.+++|+|++||||||+++.|++.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999998653
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=64.62 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.5
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999996
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0033 Score=67.23 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
..+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.002 Score=61.92 Aligned_cols=25 Identities=48% Similarity=0.720 Sum_probs=22.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=61.06 Aligned_cols=22 Identities=41% Similarity=0.801 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0074 Score=62.12 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
..+.-+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999998864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0024 Score=64.26 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=24.0
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
-.+|.+++|+|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999873
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.00044 Score=73.79 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=36.4
Q ss_pred cceeceEEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 511 FKLSDVDVGIDMGTR--VAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~--vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
.+++.++..|..|++ +.|.||+|+|||||+++|++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 477888888999998 999999999999999999998765443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=60.66 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0017 Score=66.18 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=22.8
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.++++.++.| +.|+||+|+|||||+++|++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 33444444555 899999999999999999975
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0017 Score=62.87 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
-.+++|+|++|||||||++.|.+.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999876543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0032 Score=59.32 Aligned_cols=22 Identities=32% Similarity=0.169 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0024 Score=69.56 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=30.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
.+..++|+|++|||||||++.|++...+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56688999999999999999999887777777754
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.003 Score=60.63 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999975
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.012 Score=62.11 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-H--------------HHHH-------HHHHHHhhcCcEEEEEeCCH
Q 048654 324 GWRMRISLARAL--F--VQPTLLLLDEPTNHLD-L--------------RAVL-------WLEEYLCRWKKTLVVVSHDR 377 (723)
Q Consensus 324 GqrQRvaLArAL--~--~~P~lLLLDEPT~~LD-~--------------~~~~-------~L~~~L~~~~~TVIivsHdl 377 (723)
++++.+.++.+| + .+|+++|+|=-++-.- . ...+ .|..++++.+.+||+|-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 566656777776 4 3699999998887641 0 0111 12334456688999999976
Q ss_pred H
Q 048654 378 D 378 (723)
Q Consensus 378 ~ 378 (723)
.
T Consensus 173 k 173 (333)
T 3io5_A 173 E 173 (333)
T ss_dssp -
T ss_pred e
Confidence 5
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0023 Score=65.15 Aligned_cols=34 Identities=35% Similarity=0.619 Sum_probs=23.9
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
+.++++.+..| +.|+||+|+|||||+++|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444444444 88999999999999999998653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0014 Score=68.88 Aligned_cols=58 Identities=29% Similarity=0.240 Sum_probs=40.9
Q ss_pred EeEEEEeCCeeeeEe-eeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 169 DNFSVAARGKELLKS-TSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 169 ~nls~~y~~~~vL~~-isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
++++..|++.. .+ ++|++. |.+++++|+||+||||++..|++...+ ..+.+.+++.++
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~ 136 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 34555565443 45 778766 999999999999999999999976533 234556655443
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0038 Score=59.44 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
|.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999854
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0038 Score=60.31 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+++|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0042 Score=61.48 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+-+++|+|++||||||++++|+.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc
Confidence 3568999999999999999999973
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0077 Score=64.30 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.047 Score=60.29 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=25.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
++.+++|+|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999776643
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0048 Score=59.15 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHh
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
|.+++|+|++||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999984
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.015 Score=58.41 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=39.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCC----------HHHHHhhCCEEEEEe
Q 048654 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHD----------RDFLNTVCTEIIHLH 391 (723)
Q Consensus 338 ~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHd----------l~~l~~iad~Ii~L~ 391 (723)
+|+++++||--. |+......+. .|...+.+||++-|+ ...+..+||.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~-~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVAN-ILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHH-HHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHH-HHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 8776555554 445558899999993 345666999999986
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0044 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0021 Score=65.19 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=21.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
..-+++|+||+||||||+.+.|+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0057 Score=58.18 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.|.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999997654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0049 Score=57.85 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 048654 193 RYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~ 212 (723)
+++|+|++||||||+.+.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999994
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.008 Score=66.50 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=22.0
Q ss_pred cEEEEECCCCccHHHHHHHHHhCC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
-.++|||+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0053 Score=62.17 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.-+++|+||+|||||||.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999843
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.069 Score=58.96 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0047 Score=59.46 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
..+.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0053 Score=62.76 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+||||||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0022 Score=65.45 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=26.3
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
....+.++.|+|++||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999999998764
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0049 Score=58.75 Aligned_cols=22 Identities=41% Similarity=0.435 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.006 Score=59.15 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999963
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0091 Score=64.37 Aligned_cols=36 Identities=39% Similarity=0.587 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc-----------CCCCCcceEEECC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAG-----------DLSPTEGEVRRSQ 558 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~G-----------l~~p~~G~I~~~~ 558 (723)
|-.++|+|.+|+|||||++.|+| .+.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56799999999999999999998 3456677776543
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.013 Score=64.93 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHhhcCcE--EEEEeC
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWL-EEYLCRWKKT--LVVVSH 375 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L-~~~L~~~~~T--VIivsH 375 (723)
|+..+.+|+.-|...+.+.+|+|.|+|. +++...... ..+.++.+.. +|||.+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 6777788888888888888999999874 666655433 3333444656 787765
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0068 Score=58.08 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
|-++.|.|+.||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997643
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.09 Score=59.01 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=26.6
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
|+.+---+.+|+.+.|.|++|+|||||+--|+-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444333489999999999999999999877763
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0045 Score=63.10 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=25.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
....+.++.|+|++||||||+.+.|+...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35667899999999999999999998753
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0062 Score=60.23 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
.+-+|+|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.006 Score=58.67 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.++.+|.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999997643
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0076 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHh
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+.++.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999984
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0068 Score=56.84 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 048654 525 RVAIVGPNGAGKSTLLNLL 543 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L 543 (723)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0063 Score=57.99 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0073 Score=57.25 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=20.2
Q ss_pred cEEEEECCCCccHHHHHHHHHh
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G 213 (723)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0064 Score=62.11 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0066 Score=62.47 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcC
Q 048654 646 PTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d 684 (723)
||++++......+.+.|.+. ..++.+.+|..+.+...++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~ 186 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIK 186 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHH
Confidence 89999988888888877654 1334667777777777663
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0069 Score=57.90 Aligned_cols=25 Identities=40% Similarity=0.292 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999999983
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0021 Score=63.15 Aligned_cols=30 Identities=40% Similarity=0.601 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
+|+|+|++|||||||++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998776433333
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0071 Score=59.04 Aligned_cols=20 Identities=55% Similarity=0.677 Sum_probs=18.3
Q ss_pred EEEECCCCccHHHHHHHHHh
Q 048654 194 YGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G 213 (723)
+.|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 723 | ||||
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-32 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-20 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-31 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-31 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-24 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-31 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-20 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-29 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-21 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-25 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-28 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-19 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-28 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-26 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-18 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-27 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-19 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-24 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-23 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-22 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-21 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-18 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-11 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.001 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-15 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 5e-05 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 7e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.004 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 0.002 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.002 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 0.004 |
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 122 bits (307), Expect = 6e-32
Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 25/231 (10%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+L V F+Y + E L D+ + +A GP+G GKST+ +LL PT GE+
Sbjct: 1 MLSARHVDFAYDDSEQI-LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 555 R-----------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKL 603
+ + +IG SQ + ++Y L E L + +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 604 GKFGLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA 659
T + K+SGGQ+ R+ + P IL+LDE T LD +S +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 660 DALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
ALD G ++++H I D +I+ +E G ++ G E
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVD-AD-----KIYFIEKGQITGS-GKHNE 223
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.2 bits (221), Expect = 2e-20
Identities = 41/233 (17%), Positives = 83/233 (35%), Gaps = 22/233 (9%)
Query: 166 ITIDNFSVA-ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
++ + A +++L+ S GP+G GKST+ LL + P ++
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE--RFYQPTAGEI 59
Query: 225 LLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAEL 284
+ Q + ++ + + + + ++G+ +D LA
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQV-LDLAFA 118
Query: 285 YEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344
+ G SGG R R+++ARA P +L+L
Sbjct: 119 RSF---------------VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163
Query: 345 DEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
DE T LD + +++ L K T +V++H + +I + ++
Sbjct: 164 DEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQI 215
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 121 bits (306), Expect = 1e-31
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 31/242 (12%)
Query: 487 EPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546
+P E+ + + VSF Y + E L D+++ I+ G VA VG +G GKSTL+NL+
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 547 LSPTEGEVR--------------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592
T G++ R+Q + + + F D T++E + D+E
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD--TVKEN-ILLGRPTATDEEV 124
Query: 593 LSKQEAVRAKLGKFGLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTN 648
+ + A LP + T + KLSGGQK R+ I ++ P IL+LDE T+
Sbjct: 125 VEAAKMANAHDFIMNLP-QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 183
Query: 649 HLDMQSIDALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706
LD++S + +ALD + ++V+H I+ D +I V+ENG + GT
Sbjct: 184 ALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-AD-----KIVVIENGHIVET-GTH 236
Query: 707 EE 708
E
Sbjct: 237 RE 238
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 95.2 bits (237), Expect = 2e-22
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 28/237 (11%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
I ID+ F +LK ++ I G+ VG +G GKSTL+ L+
Sbjct: 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---- 71
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA 282
+++ D + + + + L ++ L + T + G
Sbjct: 72 -----SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT----ATDE 122
Query: 283 ELYEKLQILGSDAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
E+ E ++ A A + L G+ E+ R K SGG + R+S+AR P
Sbjct: 123 EVVEAAKM-------ANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPP 174
Query: 341 LLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+L+LDE T+ LDL + ++E L K T ++V+H + T +I+ + + +
Sbjct: 175 ILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHI 230
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 120 bits (302), Expect = 3e-31
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 24/230 (10%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L+ V+F+YP RE L ++++ I G VA+VG +G+GKST+ +L+ EG +
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 556 -----------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLG 604
S + ++ SQ+ ++Y +E + + + +
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 133
Query: 605 KFGLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD 660
+ T I LSGGQ+ R+ + IL+LDE T+ LD +S A+
Sbjct: 134 FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 193
Query: 661 ALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
ALDE ++++H I D EI VVE+G + GT E
Sbjct: 194 ALDELQKNRTSLVIAHRLSTI-EQAD-----EIVVVEDGIIVER-GTHSE 236
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.8 bits (246), Expect = 9e-24
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
D+ N F+ R L++ +++I GK LVG +G GKST+ L+ +I
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA 282
L+ ++ ++++ V+ + V L + + + + E + +A ++A
Sbjct: 73 --LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA-ARMA 129
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
+ + + + G + SGG R RI++ARAL +L
Sbjct: 130 YAMDFINKMDN--------------GLDTIIGENGVL-LSGGQRQRIAIARALLRDSPIL 174
Query: 343 LLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+LDE T+ LD + ++ L +K T +V++H + EI+ + D +
Sbjct: 175 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGII 228
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 7e-31
Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 25/225 (11%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
+ F Y L ++++ I G + IVG +G+GKSTL L+ P G+V
Sbjct: 7 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 66
Query: 556 ------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA----KLGK 605
+ ++G Q V L +S ++ + + A +
Sbjct: 67 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 126
Query: 606 FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665
G + A LSGGQ+ R+ ++ P IL+ DE T+ LD +S + + +
Sbjct: 127 EGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 666 TGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
G V++++H + + D I V+E G + G +E
Sbjct: 186 CKGRTVIIIAHRLSTV-KNAD-----RIIVMEKGKIVEQ-GKHKE 223
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 89.2 bits (221), Expect = 1e-20
Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 24/235 (10%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
DIT N F +L + ++ I G+ G+VG +G GKSTL KL+ R P+N
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYI-PENG 58
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA 282
VL+ ++ D + ++ V + L S+ ++ S+ + KLA
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR--SIIDNISLANPGMSVEKVIYAAKLA 116
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
++ + L + G SGG R RI++ARAL P +L
Sbjct: 117 GAHDFISELR---------------EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 161
Query: 343 LLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ DE T+ LD + + + + K T+++++H + II + K+
Sbjct: 162 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-KNADRIIVMEKGKI 215
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 116 bits (291), Expect = 2e-29
Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 500 EVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558
VSFS+ L ++++ I+ G +AI G G+GK++LL L+ G+L +EG ++ S
Sbjct: 38 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 97
Query: 559 KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP-- 616
R+ SQ + + + + + + S +A + + ++
Sbjct: 98 --RVSFCSQFSWIMPGTIKENIIFGVSYD-EYRYKSVVKACQLQQDITKFAEQDNTVLGE 154
Query: 617 -IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA-LDEFTGG--VVLV 672
LSGGQ+AR+ + LLD P +LD+ + + + ++ + + +LV
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 673 SHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
+ + R D +I ++ G+ + GTF E
Sbjct: 215 TSKMEHL-RKAD-----KILILHQGSSYFY-GTFSE 243
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.1 bits (231), Expect = 2e-21
Identities = 49/258 (18%), Positives = 90/258 (34%), Gaps = 48/258 (18%)
Query: 154 EGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213
G ++ +++ + + G +LK+ ++ I G+ + G G GK++LL L+
Sbjct: 27 NGDRKHSSDENNVSFSHLCL--VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 84
Query: 214 RKIP----VPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEE 269
+ + V Q + + ++ G
Sbjct: 85 ELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII----------------------FGVS 122
Query: 270 DGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRI 329
+ + K +L + + + G + SGG R RI
Sbjct: 123 YDEYRYKSVVKACQLQQDITKFA---------------EQDNTVLGEGGVTLSGGQRARI 167
Query: 330 SLARALFVQPTLLLLDEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTE 386
SLARA++ L LLD P +LD+ V KT ++V+ + L +
Sbjct: 168 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADK 226
Query: 387 IIHLHDQKLHFYRGNFDD 404
I+ LH +FY G F +
Sbjct: 227 ILILHQGSSYFY-GTFSE 243
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 113 bits (285), Expect = 6e-29
Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 32/231 (13%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
++L ++ + N ++ +++ I G + ++GP+G GK+T L ++AG PTEG +
Sbjct: 7 VKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 556 ---------RSQKLRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEA---VRA 601
+ I Q + +T+ E +++ L++ K E VR
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYEN-IAFPLKIK----KFPKDEIDKRVRW 119
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661
+ + P A+LSGGQ+ RV + +P +LL+DEP ++LD + A+
Sbjct: 120 AAELLQIEELLNRYP-AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178
Query: 662 L----DEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
+ + + V+HD + D I V+ G + + G+ E
Sbjct: 179 IKKLQQKLKVTTIYVTHDQVEAMTMGD-----RIAVMNRGQLLQI-GSPTE 223
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 102 bits (256), Expect = 4e-25
Identities = 49/235 (20%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDV 224
++ ++N + + ++ I G+ L+GP+G GK+T L+++A + P I
Sbjct: 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65
Query: 225 LLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAEL 284
+ + I V ++ ++ +V +
Sbjct: 66 GDRDVTYLPPKDRNISMVFQSY-----------AVWPHMTV-------------YENIAF 101
Query: 285 YEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344
K++ D + + L E+ R SGG R R+++ARA+ V+P +LL+
Sbjct: 102 PLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 160
Query: 345 DEPTNHLD--LRAVLW--LEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
DEP ++LD LR + +++ + K T + V+HD+ T+ I ++ +L
Sbjct: 161 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (283), Expect = 1e-28
Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 35/244 (14%)
Query: 491 LTPPLLQ-LIE---VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545
LTP L+ L++ VSF+YPNR D L + + G A+VGPNG+GKST+ LL
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 546 DLSPTEGEVR-----------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS 594
PT G++ R ++ Q + ++Y L P E ++
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 595 KQEAVRAKLGKF--GLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTN 648
AV++ F GLP + T + ++LSGGQ+ V + KP +L+LD+ T+
Sbjct: 123 A-AAVKSGAHSFISGLP-QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 649 HLDMQS----IDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPG 704
LD S L ++ + ++ V+L++ L+ D I +E G + G
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQAD-----HILFLEGGAIREG-G 233
Query: 705 TFEE 708
T ++
Sbjct: 234 THQQ 237
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.6 bits (209), Expect = 6e-19
Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 28/239 (11%)
Query: 165 DITIDNFSVA---ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221
+ + S A +L+ + + G+ LVGPNG GKST+ LL + P
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ--NLYQPTG 68
Query: 222 IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKL 281
+LL + + + + V+ + + + + G E++
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQVA-------AVGQEPQVFGRSLQENIAYGLTQKPTMEEI 121
Query: 282 AELYEKLQILGSDAAEAQASKILAGL-GFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
A ++ A ++GL SGG R ++LARAL +P
Sbjct: 122 TA----------AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPC 171
Query: 341 LLLLDEPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+L+LD+ T+ LD + L +E+ L + ++++++ + I+ L +
Sbjct: 172 VLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEGGAI 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (280), Expect = 2e-28
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 30/229 (13%)
Query: 495 LLQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
+++L V+ +Y E+ L +V++ I G V+I+GP+G+GKST+LN++ PTEG
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 553 EV---------------RRSQKLRIGRYSQHFVDLLTM---EETPVSYLLRLHPDQEGLS 594
EV + ++ +IG Q F + + E + + + G
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 654
+++ L L +LSGGQ+ RV + P I+L D+PT LD ++
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 655 ----IDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ L +E VV+V+HD + R + I +++G V
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGE-----RIIYLKDGEV 223
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 95.7 bits (238), Expect = 6e-23
Identities = 50/237 (21%), Positives = 102/237 (43%), Gaps = 21/237 (8%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
+K++T + + LK+ ++ I G+ ++GP+G GKST+L ++ + P
Sbjct: 4 LKNVTK-TYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTEG 60
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLA 282
+V + + D + + V ++ + T+++ E L
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFV--FQQFNLIPLLTALENVE-----------LP 107
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
+++ + + +A + L + SGG + R+++ARAL P ++
Sbjct: 108 LIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 343 LLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
L D+PT LD + + + L + KT+VVV+HD + II+L D ++
Sbjct: 168 LADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 111 bits (280), Expect = 4e-28
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 23/239 (9%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ + + G E+LK S++ G ++G +G GKST L+ + + P ++
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN--FLEKPSEGAII 60
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVA------SLQNSTSVDGEEDGDDANDAGE 279
+ Q + Q V+ +L LR + +L + +V E
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV------------LE 108
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
+ E ++ L A +A K LA +G + QG+ SGG + R+S+ARAL ++P
Sbjct: 109 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP 168
Query: 340 TLLLLDEPTNHLDLRAVLWLEEYLCRWK---KTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+LL DEPT+ LD V + + + KT+VVV+H+ F V + +I LH K+
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (268), Expect = 1e-26
Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 43/236 (18%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV- 554
L +I++ Y E L V + G ++I+G +G+GKST L + P+EG +
Sbjct: 3 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 555 -----------------------RRSQKLRIGRYSQHF--VDLLTMEETPVSYLLRLHPD 589
R + R+ QHF +T+ E + +++
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-- 118
Query: 590 QEGLSKQEA---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646
GLSK +A L K G+ LSGGQ+ RV +P +LL DEP
Sbjct: 119 --GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 176
Query: 647 TNHLDMQSIDALADALDEFTG---GVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
T+ LD + + + + + +V+V+H+ V + + G +
Sbjct: 177 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS-----HVIFLHQGKI 227
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (278), Expect = 5e-28
Identities = 52/253 (20%), Positives = 92/253 (36%), Gaps = 37/253 (14%)
Query: 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551
T +L+ + + + L V + ++ G I+GPNG+GKSTL+N++ G L E
Sbjct: 1 TMEILRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 58
Query: 552 GEV------------RRSQKLRIGRYSQHFVDLLTM-------------EETPVSYLLRL 586
G V I R Q L M E+P++ L
Sbjct: 59 GRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK 118
Query: 587 HPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646
+ E L L +LSGGQ V M+ P ++++DEP
Sbjct: 119 KWIPKEEEMVEKAFKILEFLKLSHLYD-RKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 177
Query: 647 TNHLDMQSIDALADALDEFTG---GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703
+ + + + E +++ H ++ D ++V+ NG +
Sbjct: 178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID-----HLYVMFNGQI-IAE 231
Query: 704 GTFEEYKEDLQRE 716
G EE +++ +
Sbjct: 232 GRGEEEIKNVLSD 244
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 101 bits (253), Expect = 1e-24
Identities = 43/233 (18%), Positives = 87/233 (37%), Gaps = 12/233 (5%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ +N + L S+ ++ G ++GPNG GKSTL+ ++ +
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV--- 61
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
D + + H +V+ + L+ T ++ G+ L L+
Sbjct: 62 ----YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES-PLNSLF 116
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
K I + +A KIL L + R SGG + + RAL P ++++D
Sbjct: 117 YKKWIPKEEEMVEKAFKILEFLKL-SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 175
Query: 346 EPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
EP + + ++ K T +++ H D + + + + ++
Sbjct: 176 EPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 107 bits (269), Expect = 5e-27
Identities = 59/233 (25%), Positives = 90/233 (38%), Gaps = 36/233 (15%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
++QL +V+ S +L + + G + +VGPNGAGKSTLL +AG ++ +G +
Sbjct: 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSI 55
Query: 555 R---------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGK 605
+ + KL + R YL D+ + E + G
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT---RTELLNDVAGA 112
Query: 606 FGLPSHNHLTPIAKLSGGQKARVV-------FTSISMSKPHILLLDEPTNHLDMQSIDAL 658
L +LSGG+ RV T + +LLLDEP N LD+ AL
Sbjct: 113 LALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 171
Query: 659 ADALDEFTG---GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
L +V+ SHD R W+++ G + G EE
Sbjct: 172 DKILSALCQQGLAIVMSSHDLNHTLRHAH-----RAWLLKGGKMLAS-GRREE 218
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 82.3 bits (203), Expect = 3e-18
Identities = 50/240 (20%), Positives = 79/240 (32%), Gaps = 43/240 (17%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ + + + + R L S + G+ LVGPNG GKSTLL +A +
Sbjct: 4 MQLQDVAESTR----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG---MTSGKGSIQ 56
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
Q + + + + + T ++ + + L
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD 116
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL-------FVQ 338
+KL GR T SGG R+ LA +
Sbjct: 117 DKL--------------------------GRSTNQLSGGEWQRVRLAAVVLQITPQANPA 150
Query: 339 PTLLLLDEPTNHLDLRAVLWLEEY---LCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
LLLLDEP N LD+ L++ LC+ +V+ SHD + L K+
Sbjct: 151 GQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 107 bits (268), Expect = 7e-27
Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 22/234 (9%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
+ +E L + I+ G ++GPNGAGK+T L +++ + P+ G V
Sbjct: 8 LRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN 65
Query: 556 -----RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS 610
+ I + M+ + +E V GL
Sbjct: 66 VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE 125
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TG 667
++ S G +++ M P + +LDEPT+ LD+ + + L +
Sbjct: 126 KIK-DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 184
Query: 668 GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKAEV 721
+++ SH+ + +CD I ++ NGT+ GT EE KE + + EV
Sbjct: 185 TILVSSHNMLEVEFLCD-----RIALIHNGTI-VETGTVEELKERYKAQNIEEV 232
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 97.0 bits (241), Expect = 3e-23
Identities = 57/266 (21%), Positives = 113/266 (42%), Gaps = 33/266 (12%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ + + KE+LK S I G+ +GL+GPNG GK+T L++++ P +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--- 59
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
V + V ++ ++ ++S E + ++
Sbjct: 60 TVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL--------------------RFV 99
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
S E + G ++++ R ++S G ++ +ARAL V P L +LD
Sbjct: 100 AGFYASSSSEIEEMVERATEIAGLGEKIKDRV-STYSKGMVRKLLIARALMVNPRLAILD 158
Query: 346 EPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNF 402
EPT+ LD+ + + L + + T++V SH+ + +C I +H+ + G
Sbjct: 159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET-GTV 217
Query: 403 DDFESGYEQRRKEMNKKFEIYEKQVK 428
++ + Y+ + E E++E+ VK
Sbjct: 218 EELKERYKAQNIE-----EVFEEVVK 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 107 bits (268), Expect = 8e-27
Identities = 63/230 (27%), Positives = 99/230 (43%), Gaps = 36/230 (15%)
Query: 495 LLQLIEVSFSYPNREDFK--LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552
+++L ++ + L++V + + G ++G +GAGKSTL+ + PTEG
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 553 EVR--------------RSQKLRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQ 596
V + +IG QHF L T+ V+ L L K
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN-VALPLELD----NTPKD 115
Query: 597 EA---VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
E V L GL + P + LSGGQK RV S P +LL DE T+ LD
Sbjct: 116 EVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 654 ---SIDALADALDEFTG-GVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
SI L ++ G ++L++H+ ++ R+CD + V+ NG +
Sbjct: 175 TTRSILELLKDINRRLGLTILLITHEMDVVKRICD-----CVAVISNGEL 219
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 93.0 bits (231), Expect = 7e-22
Identities = 56/238 (23%), Positives = 110/238 (46%), Gaps = 28/238 (11%)
Query: 166 ITIDN----FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221
I + N F R + L + S+ + G+ YG++G +G GKSTL++ + + P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTE 59
Query: 222 IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKL 281
VL+ QE+ EL K R ++ + ++ + +
Sbjct: 60 GSVLVDGQELTTLSE----------SELTKARRQIGMIFQHFNLL------SSRTVFGNV 103
Query: 282 AELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTL 341
A +L D + + +++L+ +G + P + SGG + R+++ARAL P +
Sbjct: 104 AL-PLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKV 161
Query: 342 LLLDEPTNHLD---LRAVLWLEEYLCRW-KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
LL DE T+ LD R++L L + + R T+++++H+ D + +C + + + +L
Sbjct: 162 LLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 105 bits (262), Expect = 2e-26
Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 21/199 (10%)
Query: 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555
L++ ++S Y L + + I+ G V GPNG GK+TLL ++ L P +GE+
Sbjct: 3 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 556 ------RSQKLRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG 607
K +I + + +++E+ + + L+ + + + L
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDY-LKAVASLYGVKV---NKNEIMDALESVE 115
Query: 608 LPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS----IDALADALD 663
+ + +LS G RV S + I +LD+P +D S + ++ + L
Sbjct: 116 VLDLKK--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK 173
Query: 664 EFTGGVVLVSHDSRLISRV 682
E ++ +
Sbjct: 174 EKGIVIISSREELSYCDVN 192
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 85.4 bits (211), Expect = 1e-19
Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 40/230 (17%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ I + SV K +L+ ++ I G GPNG+GK+TLLK ++ P+ I
Sbjct: 3 LEIRDLSVG-YDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY- 60
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
+ K++ ++ L V + +D L
Sbjct: 61 -------------------NGVPITKVKGKIFFLPEEIIVPRKISVEDY---------LK 92
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
+ G + + L + + S G R+ LA L V + +LD
Sbjct: 93 AVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLD 150
Query: 346 EPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTEIIHLH 391
+P +D + + + + K ++ + + C +LH
Sbjct: 151 DPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY----CDVNENLH 196
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 101 bits (252), Expect = 1e-24
Identities = 41/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)
Query: 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553
+L++ + Y + +D+ + G V ++G NGAGK+T L+ +AG + +G+
Sbjct: 5 IVLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 554 VR------------RSQKLRIGRYSQHFVDLLTMEETP-VSYLLRLHPDQEGLSKQEAVR 600
+ ++ I + + + D+EG+ + +
Sbjct: 63 IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGI--KRDLE 120
Query: 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD 660
F LSGG++ + MS+P +L++DEP+ L + + +
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 661 ALDEFTG---GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712
+ + ++LV ++ +V +V+E G + G E ++
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAH-----YGYVLETGQI-VLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 96.9 bits (241), Expect = 3e-23
Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 25/233 (10%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ + + V +K +++ G+ L+G NG GK+T L +A I
Sbjct: 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
+ + E E +D + E + L+
Sbjct: 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF 126
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
+L KE + + SGG + +++ RAL +P LL++D
Sbjct: 127 PRL----------------------KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD 164
Query: 346 EPTNHLDLRAVLWLEEYLCRWKK---TLVVVSHDRDFLNTVCTEIIHLHDQKL 395
EP+ L V + E + + + T+++V + V L ++
Sbjct: 165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 98.9 bits (246), Expect = 8e-24
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
++L++V + + ++ + + G + ++GP+G GK+T L ++AG P+ G++
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 555 RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE------------GLSKQEA---V 599
KL FV + V L+P + +QE V
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 600 RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSID 656
R GL + P +LSGGQ+ RV + KP + L+DEP ++LD +
Sbjct: 121 REVAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179
Query: 657 ALADALDEFTG-GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
A L G + V+HD + D I V+ G + + G+ +E
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGD-----RIAVMNRGVLQQV-GSPDE 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 97.3 bits (242), Expect = 3e-23
Identities = 44/234 (18%), Positives = 95/234 (40%), Gaps = 23/234 (9%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ + + ++ S+ + G+ L+GP+G GK+T L+++A + P +
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIY 61
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
+ ++ V ++ V ++ + +
Sbjct: 62 IGDKLVADPEK----------------GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP 105
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
KL+ + + + ++ LG T E+ R + SGG R R++L RA+ +P + L+D
Sbjct: 106 LKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD 164
Query: 346 EPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
EP ++LD + + + L + T + V+HD+ T+ I ++ L
Sbjct: 165 EPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 95.9 bits (238), Expect = 8e-23
Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 28/225 (12%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
+ + VS + + L +V++ I+ G R I+GP+GAGK+T + ++AG P+ GE+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 555 R--------------RSQKLRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEA 598
+ +IG Q + LT E L + +E + ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI--RKR 120
Query: 599 VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ---SI 655
V + + P +LSG Q+ RV + P +LLLDEP ++LD + S
Sbjct: 121 VEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 656 DALADALDEFTGG-VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
AL + G +++VSHD I + D + V+ G +
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIAD-----RVGVLVKGKL 219
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 76.3 bits (187), Expect = 5e-16
Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 26/236 (11%)
Query: 166 ITIDNFSVAARGKEL--LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
I + N S + ++ L + ++ I +G+R+G++GP+G GK+T ++++A + VP +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA--GLDVPSTGE 61
Query: 224 VLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAE 283
+ ++ V + + V + + N +
Sbjct: 62 LYFDDRLVASNGK-----------------LIVPPEDRKIGMVFQTWALYPNLTAFENIA 104
Query: 284 LYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
+ + + ++ L + P + SG + R++LARAL P+LLL
Sbjct: 105 FPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLL 163
Query: 344 LDEPTNHLDLRAVLWLE----EYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
LDEP ++LD R E R TL+VVSHD + + + L KL
Sbjct: 164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 95.4 bits (237), Expect = 8e-23
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 22/225 (9%)
Query: 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR- 555
QL V+ ++ D+++ I G V VGP+G GKSTLL ++AG + T G++
Sbjct: 2 QLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59
Query: 556 --------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG 607
+ +G Q + + + + V
Sbjct: 60 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119
Query: 608 LPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALADALDE 664
L P LSGGQ+ RV +++P + LLDEP ++LD + L +
Sbjct: 120 LAHLLDRKP-KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 665 FTGG-VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
G ++ V+HD + D +I V++ G V++ G E
Sbjct: 179 RLGRTMIYVTHDQVEAMTLAD-----KIVVLDAGRVAQV-GKPLE 217
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 94.2 bits (234), Expect = 2e-22
Identities = 51/234 (21%), Positives = 102/234 (43%), Gaps = 29/234 (12%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ + N + A + K ++ I G+ VGP+G GKSTLL+++A + ++ +
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI- 59
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
E +D + V + L ++ +N S + G +++ ++
Sbjct: 60 ---GEKRMNDTPPAERGVGMVFQSYALYPHLSVAEN-MSFGLKLAGAKKEVINQRVNQVA 115
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
E LQ+ + R K+ SGG R R+++ R L +P++ LLD
Sbjct: 116 EVLQL--------------------AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 155
Query: 346 EPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
EP ++LD + + + R +T++ V+HD+ T+ +I+ L ++
Sbjct: 156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 92.0 bits (228), Expect = 1e-21
Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 30/229 (13%)
Query: 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
++++ +S + N F L ++ + ++ G I+GP GAGK+ L L+AG P G +
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 555 R---------RSQKLRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAKL 603
+K I Q++ + +++ + + + + V
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGM-----RMKKIKDPKRVLDTA 112
Query: 604 GKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD---MQSIDALAD 660
+ P+ LSGG++ RV ++ P ILLLDEP + LD ++ +
Sbjct: 113 RDLKIEHLLDRNPL-TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 661 ALDEFTG-GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
L + V+ ++HD + D I VV +G + + G EE
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMAD-----RIAVVMDGKLIQV-GKPEE 214
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.6 bits (175), Expect = 1e-14
Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 33/234 (14%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I I++ S L + S+++ G+ + ++GP G GK+ L+L+A +P I +
Sbjct: 2 IEIESLSRK-WKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELY 285
+ + ++ A V + L +L+ + +D +++ +
Sbjct: 61 GKDVTDLSPEKH-DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP-------KRVLDTA 112
Query: 286 EKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345
L+I + + R + SGG + R++LARAL P +LLLD
Sbjct: 113 RDLKI--------------------EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152
Query: 346 EPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
EP + LD R E L K T++ ++HD+ + I + D KL
Sbjct: 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 82.4 bits (203), Expect = 3e-18
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 24/212 (11%)
Query: 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---------RSQKL 560
+F+L +VD + ++GP GAGKS L L+AG + P GEVR ++
Sbjct: 13 NFRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70
Query: 561 RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKL 620
IG Q + + + ++ + VR K G+ P A+L
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERV--ERDRRVREMAEKLGIAHLLDRKP-ARL 127
Query: 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE----FTGGVVLVSHDS 676
SGG++ RV + +P +LLLDEP + +D+++ L + L F ++ V+HD
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 677 RLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708
+ + D E+ V+ NG + G +E
Sbjct: 188 IEAAMLAD-----EVAVMLNGRIVEK-GKLKE 213
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 62.0 bits (150), Expect = 2e-11
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 31/205 (15%)
Query: 195 GLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLRE 254
L+GP G GKS L+L+A P + + + + +R I V + L
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA----LFP 83
Query: 255 EVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314
++ +N + + + ++AE +L
Sbjct: 84 HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD---------------------- 121
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTL 370
R SGG R R++LARAL +QP LLLLDEP + +DL+ L E L + +
Sbjct: 122 -RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180
Query: 371 VVVSHDRDFLNTVCTEIIHLHDQKL 395
+ V+HD + E+ + + ++
Sbjct: 181 LHVTHDLIEAAMLADEVAVMLNGRI 205
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 78.9 bits (193), Expect = 1e-17
Identities = 18/197 (9%), Positives = 47/197 (23%), Gaps = 24/197 (12%)
Query: 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLL 584
++ I G G GK+TL+ + L + + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFR--IITTEGKKKIF 59
Query: 585 RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644
+ + + + ++++D
Sbjct: 60 SSKFFTSKKLVGS-------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 645 EPTNHLDM--QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702
E + D + + + VV + + EI + +
Sbjct: 107 EIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH-PLVK-----EIRRLPGAVLIEL 160
Query: 703 -PGTFEEYKEDLQREIK 718
P + ED+ ++
Sbjct: 161 TPENRDVILEDILSLLE 177
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 38.4 bits (88), Expect = 0.001
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 193 RYGLVGPNGMGKSTLLKLLA 212
+ + G G+GK+TL+K +
Sbjct: 2 KIIITGEPGVGKTTLVKKIV 21
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 42.3 bits (98), Expect = 5e-05
Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 2/149 (1%)
Query: 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLL 584
V +VG AGKS+LL + + +G + T+ + P ++
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIP--GII 60
Query: 585 RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644
+ +GL + + L + K + V ++ + L+
Sbjct: 61 EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120
Query: 645 EPTNHLDMQSIDALADALDEFTGGVVLVS 673
+ L+ +++ ALADAL V+ VS
Sbjct: 121 NKVDLLEEEAVKALADALAREGLAVLPVS 149
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 38.6 bits (88), Expect = 7e-04
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAG 545
G +V I G AGKS+LLN LAG
Sbjct: 1 GMKVVIAGRPNAGKSSLLNALAG 23
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.002
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 611 HNHLTPIAKLSGGQKARVVFT---SISMSKPH-ILLLDEPTNHLDMQSIDALADALDEFT 666
+ LSGG+K +I+ +P +LDE LD+ ++ +A +
Sbjct: 324 LKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR 383
Query: 667 GG---VVLVSHDSRLISR 681
+++S + + +
Sbjct: 384 NPDLQFIVISLKNTMFEK 401
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.8 bits (86), Expect = 0.004
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213
+ + + NF K T V ++GPNG GKS ++ +++
Sbjct: 3 LVGLELSNF------KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISF 47
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 37.7 bits (86), Expect = 0.002
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 520 IDMGTRVAIVGPNGAGKSTLLNLLAGD 546
I +VAIVG GKSTL N +
Sbjct: 5 ITDAIKVAIVGRPNVGKSTLFNAILNK 31
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 37.6 bits (86), Expect = 0.002
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLL 584
V +VG GKSTLL++++ + +G M + P L+
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLP--GLI 60
Query: 585 RLHPDQEGLSKQ 596
GL Q
Sbjct: 61 EGAHQGVGLGHQ 72
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 36.5 bits (83), Expect = 0.004
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 525 RVAIVGPNGAGKSTLLNLLAG 545
R+ IVG GKSTLLN L
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLN 22
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 723 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.63 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.44 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.16 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.07 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.06 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.72 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.68 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.62 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.06 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.99 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.86 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.81 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.57 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.37 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.09 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.89 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.89 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.87 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.82 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.73 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.69 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.69 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.65 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.64 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.62 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.55 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.5 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.49 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.45 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.45 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.43 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.37 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.33 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.32 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.31 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.28 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.28 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.24 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.23 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.18 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.16 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.12 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.09 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.04 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.04 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.01 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.99 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.98 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.97 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.95 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.95 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.94 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.94 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.9 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.85 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.84 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.83 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.79 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.78 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.66 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.64 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.62 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.56 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.56 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.52 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.51 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.48 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.48 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.46 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.46 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.44 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.44 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.43 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.41 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.39 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.38 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.38 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.37 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.37 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.37 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.34 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.32 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.32 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.3 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.3 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.3 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.3 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.3 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.3 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.27 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.25 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.25 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.24 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.23 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.21 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.17 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.17 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.17 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.15 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.12 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.11 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.09 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.08 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.07 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.02 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.99 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.97 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.96 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.95 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.93 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.93 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.93 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.91 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.9 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.89 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.86 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.84 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.82 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.79 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.78 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.78 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.71 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.69 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.69 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.68 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.67 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.66 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.64 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.64 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.61 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.58 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.55 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.55 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.49 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.46 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.43 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.41 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.41 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.39 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.38 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.37 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.37 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.32 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.31 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.3 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.25 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.24 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.22 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.21 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.19 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.18 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.15 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.13 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.13 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.12 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.12 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.11 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.08 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.07 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.07 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.04 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.04 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.04 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.03 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.03 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.01 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.98 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.96 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.96 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.94 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.93 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.91 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.89 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.88 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.86 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.83 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.81 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.81 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.78 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.75 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.74 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.72 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.71 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.63 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.62 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.61 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.6 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.56 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.55 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.43 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.42 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.42 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.38 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.34 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.34 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.33 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.33 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.31 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.29 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.23 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.22 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.22 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.21 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.2 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.17 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.16 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.16 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.11 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.08 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.06 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.06 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.02 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.02 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.02 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.02 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.94 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.87 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.86 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.85 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.85 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.84 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.82 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.79 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.79 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.78 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.78 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.76 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.75 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.73 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.71 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.68 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.68 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.66 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.63 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.62 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.6 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.59 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.58 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.55 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.53 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.53 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.52 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.49 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.48 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.48 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.47 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.46 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.46 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.44 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.44 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.41 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.37 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.36 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.35 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.34 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.32 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.26 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.23 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.17 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.15 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.14 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.13 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.08 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.08 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.07 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.06 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.06 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.05 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.04 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.02 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.98 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.96 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.95 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.94 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.92 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.87 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.81 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.77 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.77 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.75 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.75 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.72 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.72 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.69 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.67 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.62 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.6 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.56 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.54 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.52 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.52 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.49 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.44 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.43 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.41 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.4 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.4 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.39 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.37 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.27 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.24 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.22 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.21 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.2 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.19 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.09 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.03 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.02 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.89 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.86 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.85 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.84 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.7 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.69 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.67 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.62 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.59 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.58 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.57 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.57 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.54 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.5 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.46 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.42 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.39 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.38 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.36 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.32 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.3 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.25 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.25 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.22 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.15 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.06 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.05 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.98 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.88 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.87 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.83 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.8 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.72 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.64 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.57 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.54 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.5 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.46 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.43 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.34 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.33 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 89.24 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.21 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.92 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.85 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.81 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.73 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.22 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.18 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.17 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.17 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.15 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.1 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.01 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.99 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.81 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.78 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.73 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.43 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.28 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.16 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.89 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 86.85 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.74 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.56 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.25 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.13 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.96 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.91 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.72 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.51 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 85.51 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.38 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.37 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.23 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.22 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 85.2 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.12 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.94 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.8 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 84.25 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.2 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.1 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.83 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.81 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.66 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.26 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.15 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.04 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.84 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 82.19 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 81.25 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.69 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.58 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.41 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 80.14 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.12 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 80.08 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 80.03 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-47 Score=385.96 Aligned_cols=205 Identities=27% Similarity=0.350 Sum_probs=147.2
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++++ ..+||++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 78 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 78 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEEC
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeec
Confidence 689999999986 45899999999999999999999999999999999999999999998773 2599999
Q ss_pred ccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|++ +..+++.++.... .... ........+++.++|+.++|.+.. ++++.+|||||||||+|||||+.+|+|||||
T Consensus 79 Q~~~l~~~~tv~eni~~~-~~~~-~~~~~~~~~~v~~~l~~~~l~~~~-~~~~~~LSGGqkQRvaiAraL~~~P~illlD 155 (232)
T d2awna2 79 QSYALYPHLSVAENMSFG-LKLA-GAKKEVINQRVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 155 (232)
T ss_dssp SSCCC-----------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEE
T ss_pred cccccccchhHHHHHHHH-HHHc-CCCHHHHHHHHHHHHHhCCChhhh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 975 3344555553221 1111 111112346689999999998655 4677999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 645 EPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||+|||+.++..+++.|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++.+
T Consensus 156 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~d-----ri~vm~~G~iv~-~G~~~el~~ 220 (232)
T d2awna2 156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD-----KIVVLDAGRVAQ-VGKPLELYH 220 (232)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EeCHHHHHh
Confidence 999999999999999888765 5699999999999999995 999999999985 589988754
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.4e-47 Score=385.25 Aligned_cols=206 Identities=24% Similarity=0.353 Sum_probs=172.7
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------- 559 (723)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence 5899999999986 45899999999999999999999999999999999999999999998762
Q ss_pred eeEEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 560 LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 560 ~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
..+||++|++ ++.+++.++.... ...+... .....+++.++|+.++|.+.. ++++.+|||||||||+|||||+.+
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~-~~~~~~~-~~e~~~~v~~~l~~~~l~~~~-~~~p~~LSGGqkQRv~IAraL~~~ 157 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFP-LKLRKVP-RQEIDQRVREVAELLGLTELL-NRKPRELSGGQRQRVALGRAIVRK 157 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHH-HHHTTCC-HHHHHHHHHHHHHHHTCGGGT-TCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred ccceecccchhhcchhhhhHhhhhh-HHHcCCC-HHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcC
Confidence 2599999985 2344555553322 2222111 111345688999999998655 467799999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+||||||||+|||+.++..+++.|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++..
T Consensus 158 P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~d-----rv~vm~~G~iv~-~G~~~el~~ 229 (240)
T d1g2912 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGD-----RIAVMNRGVLQQ-VGSPDEVYD 229 (240)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999999999988765 5699999999999999995 999999999985 589988754
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.5e-47 Score=382.25 Aligned_cols=202 Identities=26% Similarity=0.398 Sum_probs=172.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
||+++||+++|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+||+
T Consensus 1 mi~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp CEEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceee
Confidence 6899999999974 3799999999999999999999999999999999999999999998874 259999
Q ss_pred cccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|++ ++.+++.+|.... ..... ....+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|+||||
T Consensus 78 ~Q~~~l~~~~tV~enl~~~-~~~~~----~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGG~~QRvaiAraL~~~P~iLll 151 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFG-MRMKK----IKDPKRVLDTARDLKIEHLL-DRNPLTLSGGEQQRVALARALVTNPKILLL 151 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHH-HHHHC----CCCHHHHHHHHHHTTCTTTT-TSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred ccccccCccccHHHHHHHH-Hhhcc----ccHHHHHHHHHHHhcchhhH-hCChhhCCHHHhcchhhhhhhhccCCceee
Confidence 9975 3344555554322 22211 12356788999999998665 467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++.+
T Consensus 152 DEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~d-----rv~vm~~G~iv~-~g~~~el~~ 217 (229)
T d3d31a2 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD-----RIAVVMDGKLIQ-VGKPEEIFE 217 (229)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS-----EEEEESSSCEEE-EECHHHHHS
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999998765 4599999999999999995 999999999984 699988753
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.9e-47 Score=383.43 Aligned_cols=203 Identities=24% Similarity=0.339 Sum_probs=169.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++++ ..+||+
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 83 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 83 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEE
Confidence 4899999999986 46899999999999999999999999999999999999999999998874 249999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++. +.+++.++. .+.....+.. ..+++.++|+.+||.+... +++.+|||||||||+|||||+.+|+|
T Consensus 84 ~Q~~~l~~~ltv~enl-----~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRvaiAraL~~~P~i 157 (239)
T d1v43a3 84 FQSYAVWPHMTVYENI-----AFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVAVARAIVVEPDV 157 (239)
T ss_dssp EC------CCCHHHHH-----HTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred eechhhcccchHHHHH-----HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHhhhccCCCc
Confidence 99752 233343332 2222222332 2356788999999986554 66799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||+|||+.++..+.++|.++ +.|||+||||++++.++|| ||++|++|+|+. .|+++++..
T Consensus 158 LllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~d-----ri~vm~~G~iv~-~G~~~el~~ 226 (239)
T d1v43a3 158 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD-----RIAVMNRGQLLQ-IGSPTEVYL 226 (239)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999999998776 4699999999999999995 999999999985 699988754
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=9.1e-47 Score=382.99 Aligned_cols=218 Identities=22% Similarity=0.297 Sum_probs=172.6
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
|..|+++||+++|++..+|+||||+|++||+++|+||||||||||+++|+|++. |.+|+|.+.++++.......
T Consensus 4 M~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~---- 77 (239)
T d1v43a3 4 MVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKD---- 77 (239)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGG----
T ss_pred cCeEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecccCCccc----
Confidence 456999999999999999999999999999999999999999999999999865 56788888888775433211
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
+.++++.+.... .....+.+++... ..+..+...+.+.++.++|+.+||. ...++++.+||
T Consensus 78 -----------r~ig~v~Q~~~l------~~~ltv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS 138 (239)
T d1v43a3 78 -----------RNISMVFQSYAV------WPHMTVYENIAFP-LKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLS 138 (239)
T ss_dssp -----------GTEEEEEC------------CCCHHHHHHTT-CC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCC
T ss_pred -----------ceEEEEeechhh------cccchHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCC
Confidence 112222221100 0111223333211 1122344567788999999999997 46689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++|||.++..++++|+++ +.|||+||||++++..+||||++|++|+|+.
T Consensus 139 GGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~- 217 (239)
T d1v43a3 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ- 217 (239)
T ss_dssp SSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-
T ss_pred HHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-
Confidence 99999999999999999999999999999999999998888754 7899999999999999999999999999974
Q ss_pred cCChhhHH
Q 048654 399 RGNFDDFE 406 (723)
Q Consensus 399 ~g~~~~~~ 406 (723)
.|+++++.
T Consensus 218 ~G~~~el~ 225 (239)
T d1v43a3 218 IGSPTEVY 225 (239)
T ss_dssp EECHHHHH
T ss_pred EcCHHHHH
Confidence 58877764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.6e-47 Score=384.17 Aligned_cols=207 Identities=28% Similarity=0.389 Sum_probs=172.0
Q ss_pred eEEEEEEEEEcCCCcc--cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNRED--FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~--~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
||+++||++.|+.+.. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 6899999999975432 4799999999999999999999999999999999999999999998764
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..+||++|++. +.+++.++... .+.... .......+++.++|+.+||.+.. ++++.+|||||||||+|||||+.
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~-~l~~~~-~~~~~~~~~v~~~L~~vgL~~~~-~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVAL-PLELDN-TPKDEVKRRVTELLSLVGLGDKH-DSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHH-HHHTTT-CCTTHHHHHHHHHHHHHSTTTTT-SSCBSCCCHHHHHHHHHHHHHHT
T ss_pred hccccccccccccCCCccHHHHHHH-HHHHcC-CCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHhhhhcc
Confidence 24999999863 23344444322 222221 11122356788999999998765 46679999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+|| ||++|++|+|++ .|+++++.
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~d-----ri~vl~~G~iv~-~G~~~ei~ 229 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD-----CVAVISNGELIE-QDTVSEVF 229 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCS-----EEEEEETTEEEE-EEETTTTT
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999998775 4699999999999999995 999999999985 58877653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.1e-47 Score=385.83 Aligned_cols=205 Identities=27% Similarity=0.368 Sum_probs=172.6
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------e
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------L 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------~ 560 (723)
.|+++||+++|+++...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++++ .
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 58999999999654456899999999999999999999999999999999999999999998763 2
Q ss_pred eEEEEcccc--ccccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc
Q 048654 561 RIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM 635 (723)
Q Consensus 561 ~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~ 635 (723)
++||++|++ ++.+++.+++.. .+.. .+.. ..+++.++|+.+||.+.. ++++.+|||||||||+|||||+
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~-~l~~----~~~~~~~~~~~v~~~l~~~gL~~~~-~~~p~~LSGGqkQRvaiARaL~ 156 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAF-PLTN----MKMSKEEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVALARALV 156 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHG-GGTT----SSCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHT
T ss_pred cceEEeccccccccccHHHHhhh-hhHh----hcCCHHHHHHHHHHHHhhcChHhhh-hCChhhCCHHHHhHHHHHhHHh
Confidence 599999975 334455555321 1111 1222 245688999999998655 4667999999999999999999
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
.+|+||||||||++||+.+...+++.|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++.+
T Consensus 157 ~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~d-----ri~vm~~G~iv~-~g~~~el~~ 230 (242)
T d1oxxk2 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIAD-----RVGVLVKGKLVQ-VGKPEDLYD 230 (242)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred hcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 999999999999999999999999988776 4699999999999999995 999999999985 689988754
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-46 Score=379.56 Aligned_cols=221 Identities=24% Similarity=0.359 Sum_probs=179.2
Q ss_pred ceEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARGK----ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~~----~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++||+++|++. .+|+||||+|++||++||+||||||||||+++|+|+.. |.+|+|.+.++++...+..
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~--- 75 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSES--- 75 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHH---
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEeeeCChh---
Confidence 48999999999643 68999999999999999999999999999999999865 5678899988888654432
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+...+++.++++.+.... .....+.+++.... .+..+...+.++++.++|+.+||.+ ..++++.+
T Consensus 76 -------~~~~~rr~ig~VfQ~~~l------~~~~tv~eni~~~l-~~~~~~~~~~~~~v~~~L~~vgL~~-~~~~~~~~ 140 (240)
T d3dhwc1 76 -------ELTKARRQIGMIFQHFNL------LSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSN 140 (240)
T ss_dssp -------HHHHHHHHEEECCSSCCC------CTTSBHHHHHHHHH-HTTTCCTTHHHHHHHHHHHHHSTTT-TTSSCBSC
T ss_pred -------hhhhhhcccccccccccc------CCCccHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhh
Confidence 223345566665442211 12234455554432 2234556677899999999999975 56899999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||||||+|||||+.+|+||||||||++||+.++..++++|+++ +.|||+||||++++..+||||++|++|+|+
T Consensus 141 LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv 220 (240)
T d3dhwc1 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220 (240)
T ss_dssp CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998888653 789999999999999999999999999997
Q ss_pred EecCChhhHH
Q 048654 397 FYRGNFDDFE 406 (723)
Q Consensus 397 ~~~g~~~~~~ 406 (723)
. .|+++++.
T Consensus 221 ~-~G~~~ei~ 229 (240)
T d3dhwc1 221 E-QDTVSEVF 229 (240)
T ss_dssp E-EEETTTTT
T ss_pred E-ECCHHHHH
Confidence 4 57776653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-46 Score=381.17 Aligned_cols=215 Identities=23% Similarity=0.326 Sum_probs=146.5
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
|+++||+|+|++.++|+||||+|++||++||+|||||||||||++|+|+.. |.+|+|.+.++++......
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~-------- 70 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPA-------- 70 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGG--------
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchh--------
Confidence 689999999999999999999999999999999999999999999999865 5678888888776543221
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
++.++++.+.... .....+.+++... ..+......+.++++.++|+.+++.+ ..++++.+|||||
T Consensus 71 -------~r~ig~v~Q~~~l------~~~~tv~eni~~~-~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~LSGGq 135 (232)
T d2awna2 71 -------ERGVGMVFQSYAL------YPHLSVAENMSFG-LKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQ 135 (232)
T ss_dssp -------GTCEEEECSSCCC----------------------------CHHHHHHHHHHHHC------------------
T ss_pred -------hceeeeecccccc------ccchhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhCCChh-hhhCChhhCCHHH
Confidence 1123333222111 1122233333222 12233445677789999999999974 5689999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
||||+|||||+.+|+||||||||++||+.++..+++.|.+ .+.|||+||||++++..+||||++|++|+|+. .|+
T Consensus 136 kQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~ 214 (232)
T d2awna2 136 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGK 214 (232)
T ss_dssp ----CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EEC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EeC
Confidence 9999999999999999999999999999999988888764 47899999999999999999999999999975 588
Q ss_pred hhhHH
Q 048654 402 FDDFE 406 (723)
Q Consensus 402 ~~~~~ 406 (723)
++++.
T Consensus 215 ~~el~ 219 (232)
T d2awna2 215 PLELY 219 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.5e-46 Score=382.06 Aligned_cols=223 Identities=22% Similarity=0.319 Sum_probs=175.9
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
..|+++||+|+||+.++|+||||+|++||++||+||||||||||+++|+|+.. |.+|+|.+.+.++........
T Consensus 2 ~~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~---- 75 (240)
T d1g2912 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIF---- 75 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEE----
T ss_pred CcEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEecccchhhh----
Confidence 45999999999999999999999999999999999999999999999999875 567888888877643211100
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
....++.++++.+.... .+...+.+++.... .+......+.++++.++|+.+|+. +..++++.+|||
T Consensus 76 -----~~~~~r~ig~v~Q~~~L------~~~ltV~eni~~~~-~~~~~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~LSG 142 (240)
T d1g2912 76 -----VPPKDRDIAMVFQSYAL------YPHMTVYDNIAFPL-KLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSG 142 (240)
T ss_dssp -----CCGGGSSEEEECSCCCC------CTTSCHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCH
T ss_pred -----cccccccceecccchhh------cchhhhhHhhhhhH-HHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCH
Confidence 00001123333221111 12234455554433 233455677788999999999997 456899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
||||||+|||||+.+|+||||||||++||+.++..++++|++ .+.|||+||||++++..+||||++|++|+|+. .
T Consensus 143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~-~ 221 (240)
T d1g2912 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-V 221 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-E
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-E
Confidence 999999999999999999999999999999999999888865 37899999999999999999999999999975 4
Q ss_pred CChhhHH
Q 048654 400 GNFDDFE 406 (723)
Q Consensus 400 g~~~~~~ 406 (723)
|+++++.
T Consensus 222 G~~~el~ 228 (240)
T d1g2912 222 GSPDEVY 228 (240)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 8877653
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.9e-46 Score=377.85 Aligned_cols=199 Identities=32% Similarity=0.436 Sum_probs=163.1
Q ss_pred eEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
||+++||++.|+... ..+|+||||+|++||+++|+|||||||||||++|+|+++|++|+|++++.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 689999999997533 24799999999999999999999999999999999999999999998873
Q ss_pred --eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 560 --LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 560 --~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
..+||++|++. +.+++.++.... +... ...+.. ..+++.++|+.++|.....++++.+|||||||||+|||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELP-LIFK-YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHH-HHTC-CSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHH-HHHh-ccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence 14999999853 334444443221 2211 111222 23457789999999765445667999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
||+.+|+||||||||++||+.++..++++|.++ +.|||+||||++++ ++|| ||++|++|+|+.
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~d-----rv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGE-----RIIYLKDGEVER 225 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSS-----EEEEEETTEEEE
T ss_pred hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCC-----EEEEEECCEEEE
Confidence 999999999999999999999999999999876 35899999999987 6885 999999999974
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.8e-46 Score=384.48 Aligned_cols=233 Identities=27% Similarity=0.366 Sum_probs=178.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++||+|+|++..+|+||||+|++||++||+||||||||||+++|+|+.. |.+|+|.+.++++.............
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEeccCCccchhcccc
Confidence 3899999999999999999999999999999999999999999999999865 56788888888764221100000000
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
........+..++++.+.... .....+.+++.+...........+..+++.++|+.+|+.+...++++.+||||
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l------~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG 153 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNL------WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGG 153 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCC------CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred cHhHHHHHhcceEEEEechhh------ccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHH
Confidence 001122344555555332211 11223444444332222333456677889999999999865567889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||++||+.++..++++|+++ +.|||+||||++++..+||||++|++|+|+. .|+
T Consensus 154 ~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~-~g~ 232 (258)
T d1b0ua_ 154 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGD 232 (258)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EEC
T ss_pred HHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEE-EcC
Confidence 999999999999999999999999999999999999888754 6799999999999999999999999999974 588
Q ss_pred hhhHH
Q 048654 402 FDDFE 406 (723)
Q Consensus 402 ~~~~~ 406 (723)
++++.
T Consensus 233 ~~ev~ 237 (258)
T d1b0ua_ 233 PEQVF 237 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7e-46 Score=382.47 Aligned_cols=207 Identities=24% Similarity=0.360 Sum_probs=170.6
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------- 559 (723)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++++
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 5899999999986 35899999999999999999999999999999999999999999998763
Q ss_pred ---------eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 560 ---------LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 560 ---------~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
.++||++|++. +.+++.++........... ......+.+.++|+.++|.....++++.+|||||||||
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv 158 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL-SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV 158 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCC-CHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHH
Confidence 24899999853 2334444433222222111 11113456888999999976444456689999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCC
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~ 705 (723)
+|||||+.+|+||||||||+|||+.++..++++|+++. .|||+||||++++..+|| ||+||++|+|+. .|+
T Consensus 159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~ad-----ri~vm~~G~iv~-~g~ 232 (258)
T d1b0ua_ 159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS-----HVIFLHQGKIEE-EGD 232 (258)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EEC
T ss_pred HHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcC
Confidence 99999999999999999999999999999999998763 589999999999999995 999999999985 688
Q ss_pred HHHHH
Q 048654 706 FEEYK 710 (723)
Q Consensus 706 ~~~~~ 710 (723)
++++.
T Consensus 233 ~~ev~ 237 (258)
T d1b0ua_ 233 PEQVF 237 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.6e-45 Score=370.85 Aligned_cols=214 Identities=23% Similarity=0.317 Sum_probs=167.8
Q ss_pred ceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++||+|+|+. ..+|+||||+|++||++||+|||||||||||++|+|+.. |.+|+|.+.+.++...+...+
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~- 77 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDEL- 77 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHH-
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcCcCChhhc-
Confidence 4899999999953 248999999999999999999999999999999999865 567889888888766544322
Q ss_pred HHHHhhHHHHHH-HHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHH--HhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 241 AVVSAHEELVKL-REEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKL--QILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 241 ~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
..+ +..++++.+.... .+...+.+++....... ......+...++.++|+.+||.+...+++
T Consensus 78 ---------~~~r~~~ig~v~Q~~~l------~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 142 (230)
T d1l2ta_ 78 ---------TKIRRDKIGFVFQQFNL------IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142 (230)
T ss_dssp ---------HHHHHHHEEEECTTCCC------CTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred ---------chhhcceEEEEecchhh------CcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC
Confidence 122 2345555432211 11223444443222110 11233556778999999999986566899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..++++|.++ +.|||+||||++++ .+||||++|++|
T Consensus 143 p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G 221 (230)
T d1l2ta_ 143 PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDG 221 (230)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETT
T ss_pred hhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999988754 67999999999987 699999999999
Q ss_pred EEEE
Q 048654 394 KLHF 397 (723)
Q Consensus 394 ~i~~ 397 (723)
+|+.
T Consensus 222 ~Iv~ 225 (230)
T d1l2ta_ 222 EVER 225 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6.8e-46 Score=379.15 Aligned_cols=208 Identities=20% Similarity=0.297 Sum_probs=170.3
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL----------- 560 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~----------- 560 (723)
.+++|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++++.
T Consensus 3 sd~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp CSEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred cceEEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHH
Confidence 4679999999999986 358999999999999999999999999999999999999999999988742
Q ss_pred -eEEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhC-CCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 561 -RIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF-GLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 561 -~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
.++|++|.. ++.+++.++... ..+.........+.+..++..+ ++.+.. ++++.+|||||||||+|||||+.
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMM---GAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHG---GGTTCCCSSHHHHHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHHHHHHHHTT
T ss_pred hcccccCcccccCCcccHHHHHHH---HHHhcCCHHHHHHHHHHHHHHhhChHHHH-hCchhhCCHHHHHHHHHHHHHHh
Confidence 388999864 344455444221 1111111112334455667766 565544 46789999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+|+||||||||+|||+.++..++++|+++. .|||+||||++++.++|| ||++|++|+|+ +.|+++++.+
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~d-----rv~vl~~G~iv-~~g~~~el~~ 228 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH-----YGYVLETGQIV-LEGKASELLD 228 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS-----EEEEEETTEEE-EEEEHHHHHT
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEE-EEcCHHHHhc
Confidence 999999999999999999999999998773 589999999999999995 99999999998 5699998764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.1e-46 Score=380.68 Aligned_cols=222 Identities=23% Similarity=0.322 Sum_probs=173.5
Q ss_pred cceEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAA--RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y--~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++||+++| +...+|+||||+|++||++||+||||||||||+++|+|+.. |.+|+|.+.++++...+....
T Consensus 2 ~~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~~~~-- 77 (242)
T d1oxxk2 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIV-- 77 (242)
T ss_dssp CCEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESS--
T ss_pred CEEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEeecCchhhc--
Confidence 459999999999 56789999999999999999999999999999999999865 567888888887753221100
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
...++.++++.+.... .+...+.+++..... ...+...+.++++.++|+.+||. ...++++.+|
T Consensus 78 --------~~~rr~ig~vfQ~~~L------~p~ltv~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~L 141 (242)
T d1oxxk2 78 --------PPEDRKIGMVFQTWAL------YPNLTAFENIAFPLT-NMKMSKEEIRKRVEEVAKILDIH-HVLNHFPREL 141 (242)
T ss_dssp --------CGGGSCEEEEETTSCC------CTTSCHHHHHHGGGT-TSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGS
T ss_pred --------chhhccceEEeccccc------cccccHHHHhhhhhH-hhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhC
Confidence 0011223333222111 112234444433221 12344566788999999999996 4668999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||||||+|||||+++|+||||||||++||+.++..++++|+++ +.|||+||||++++..+||||++|++|+|+.
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~ 221 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999988887654 7899999999999999999999999999975
Q ss_pred ecCChhhHH
Q 048654 398 YRGNFDDFE 406 (723)
Q Consensus 398 ~~g~~~~~~ 406 (723)
.|+++++.
T Consensus 222 -~g~~~el~ 229 (242)
T d1oxxk2 222 -VGKPEDLY 229 (242)
T ss_dssp -EECHHHHH
T ss_pred -EcCHHHHH
Confidence 57776653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.7e-45 Score=367.45 Aligned_cols=212 Identities=25% Similarity=0.344 Sum_probs=169.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+|+|++ .+|+||||+|++||++||+||||||||||+++|+|+.. |.+|+|.+.++++......
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~------- 70 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPE------- 70 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHH-------
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccccchh-------
Confidence 4899999999986 58999999999999999999999999999999999865 5678888888877543211
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
++.++++.+.... .....+.+++..... +.... ..+++.++++.+|+.+ ..++++.+||||
T Consensus 71 --------~r~ig~v~Q~~~l------~~~~tV~enl~~~~~-~~~~~---~~~~~~~~l~~~~l~~-~~~~~~~~LSGG 131 (229)
T d3d31a2 71 --------KHDIAFVYQNYSL------FPHMNVKKNLEFGMR-MKKIK---DPKRVLDTARDLKIEH-LLDRNPLTLSGG 131 (229)
T ss_dssp --------HHTCEEECTTCCC------CTTSCHHHHHHHHHH-HHCCC---CHHHHHHHHHHTTCTT-TTTSCGGGSCHH
T ss_pred --------Hhcceeecccccc------CccccHHHHHHHHHh-hcccc---HHHHHHHHHHHhcchh-hHhCChhhCCHH
Confidence 2234444332111 112344455443322 22222 2457999999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+++|+||||||||++||+.++.+++++|+++ +.|||+||||++++..+||||++|++|+|+. .|
T Consensus 132 ~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~-~g 210 (229)
T d3d31a2 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VG 210 (229)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EE
T ss_pred HhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEE-Ec
Confidence 999999999999999999999999999999999998888653 6799999999999999999999999999974 58
Q ss_pred ChhhHH
Q 048654 401 NFDDFE 406 (723)
Q Consensus 401 ~~~~~~ 406 (723)
+++++.
T Consensus 211 ~~~el~ 216 (229)
T d3d31a2 211 KPEEIF 216 (229)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 887764
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.3e-45 Score=371.84 Aligned_cols=207 Identities=23% Similarity=0.325 Sum_probs=172.1
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRIGR 564 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~ig~ 564 (723)
.|.++||+++|+++ .+|+||||+|.+||++||+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 2 aI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 2 AVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CEEEEeEEEEECCE--EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeE
Confidence 37899999999864 5999999999999999999999999999999999999999999998773 35999
Q ss_pred Ecccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 565 YSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 565 ~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
++|.. ...+++.++.. +...++... .....+.++.+++.++|.... ++++.+|||||||||+|||||+.+|+|||
T Consensus 80 vpq~~~~~~~ltv~e~l~-~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~-~~~~~~lSgG~~qrv~iA~al~~~p~ill 156 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLR-FVAGFYASS-SSEIEEMVERATEIAGLGEKI-KDRVSTYSKGMVRKLLIARALMVNPRLAI 156 (238)
T ss_dssp ECTTCCCCTTSBHHHHHH-HHHHHHCCC-HHHHHHHHHHHHHHHCCGGGG-GSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred eeeccccCCCccHHHHHH-HHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH-hhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99963 23344444422 222222211 111234577889999997654 46789999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKED 712 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~ 712 (723)
|||||+|||+.++..+.++|+++ +.|||++|||++++..+|| ||++|++|+|+ +.|+++++.+.
T Consensus 157 LDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~d-----rv~vl~~G~iv-~~g~~~el~~~ 223 (238)
T d1vpla_ 157 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD-----RIALIHNGTIV-ETGTVEELKER 223 (238)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS-----EEEEEETTEEE-EEEEHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEE-EEcCHHHHHhc
Confidence 99999999999999999999876 3699999999999999995 99999999998 56999998764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.3e-45 Score=375.97 Aligned_cols=212 Identities=24% Similarity=0.267 Sum_probs=172.4
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce------------e
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL------------R 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~------------~ 561 (723)
.+|+++||+++|++. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++++. .
T Consensus 3 ~iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 3 EILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred ceEEEEEEEEEECCe--EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 489999999999863 58999999999999999999999999999999999999999999998742 4
Q ss_pred EEEEcccc--ccccCccccHHHHH----------HhhCCCCCCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 562 IGRYSQHF--VDLLTMEETPVSYL----------LRLHPDQEGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 562 ig~~~q~~--~~~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
++|++|.+ +..+++.++..... .......... ...+++.++++.+++.... ++++.+|||||||||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~Qrv 159 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMKLV 159 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHH
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc-cCchhhCCcHHHHHH
Confidence 89999975 23344444432100 0000000000 1234577889999997654 578899999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCC
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGT 705 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~ 705 (723)
+|||||+.+|+||||||||+|||+.++..|.++|+++ +.|||+||||++++.++|| ||++|++|+|+. .|+
T Consensus 160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~D-----rv~vm~~G~iv~-~g~ 233 (254)
T d1g6ha_ 160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID-----HLYVMFNGQIIA-EGR 233 (254)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS-----EEEEEETTEEEE-EEE
T ss_pred HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCC-----EEEEEeCCEEEE-Eec
Confidence 9999999999999999999999999999999998776 4689999999999999995 999999999984 688
Q ss_pred HHHHHHHHH
Q 048654 706 FEEYKEDLQ 714 (723)
Q Consensus 706 ~~~~~~~~~ 714 (723)
++++.....
T Consensus 234 ~~e~~~~~~ 242 (254)
T d1g6ha_ 234 GEEEIKNVL 242 (254)
T ss_dssp SHHHHHHHH
T ss_pred HHHHhhccc
Confidence 888665543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.4e-44 Score=364.98 Aligned_cols=218 Identities=24% Similarity=0.354 Sum_probs=174.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+|+||+++|+++++|+||||+|.+||++||+|||||||||||++|+|+.. |.+|+|.+.+.++.... .
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~-~------- 71 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEP-H------- 71 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCH-H-------
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecccCh-H-------
Confidence 3899999999999999999999999999999999999999999999999865 56788888887764321 1
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.++..++++++.... .......+++.. +..+......+....++.+++.+++.+ ..++++.+||||
T Consensus 72 ------~~~~~i~~vpq~~~~------~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lSgG 137 (238)
T d1vpla_ 72 ------EVRKLISYLPEEAGA------YRNMQGIEYLRF-VAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKG 137 (238)
T ss_dssp ------HHHTTEEEECTTCCC------CTTSBHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHH
T ss_pred ------HHHhhEeEeeecccc------CCCccHHHHHHH-HHHhcCCCHHHHHHHHHHHHHhCCCHH-HHhhhhhhCCHH
Confidence 122333444332111 112233343332 333444455666788899999999974 457899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||+||||.++..++++|+++ +.|||++|||++++..+||||++|++|+|+. .|+
T Consensus 138 ~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~-~g~ 216 (238)
T d1vpla_ 138 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGT 216 (238)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEE
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcC
Confidence 999999999999999999999999999999999999998754 6899999999999999999999999999974 588
Q ss_pred hhhHHh
Q 048654 402 FDDFES 407 (723)
Q Consensus 402 ~~~~~~ 407 (723)
++++..
T Consensus 217 ~~el~~ 222 (238)
T d1vpla_ 217 VEELKE 222 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877643
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.6e-45 Score=376.44 Aligned_cols=221 Identities=18% Similarity=0.238 Sum_probs=170.0
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
|.+|+++||+++|++.++|+||||+|++||++||+||||||||||+++|+|+.. |.+|+|.+.++++.........
T Consensus 2 M~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~-- 77 (254)
T d1g6ha_ 2 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELY-- 77 (254)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHH--
T ss_pred cceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEeccchhHHHHH--
Confidence 457999999999999999999999999999999999999999999999999864 5678999988887654432211
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHH------------HHHHHHhcCchHHHHHHHHHHHhCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAE------------LYEKLQILGSDAAEAQASKILAGLGFT 310 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~~~~L~~lgl~ 310 (723)
+..++++.+... ......+.+++.. ++............+++.++++.+++.
T Consensus 78 ----------~~gi~~v~Q~~~------~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 141 (254)
T d1g6ha_ 78 ----------HYGIVRTFQTPQ------PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 141 (254)
T ss_dssp ----------HHTEEECCCCCG------GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG
T ss_pred ----------HhcCCccCCccc------cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc
Confidence 111122211100 0011122222211 000001112345567889999999997
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEE
Q 048654 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEI 387 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~I 387 (723)
. ..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..|+++|+++ +.|||+||||++++.++||||
T Consensus 142 ~-~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv 220 (254)
T d1g6ha_ 142 H-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHL 220 (254)
T ss_dssp G-GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEE
T ss_pred h-hccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEE
Confidence 4 568999999999999999999999999999999999999999999999888654 689999999999999999999
Q ss_pred EEEeCCEEEEecCChhhH
Q 048654 388 IHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 388 i~L~~G~i~~~~g~~~~~ 405 (723)
++|++|+|+. .|++++.
T Consensus 221 ~vm~~G~iv~-~g~~~e~ 237 (254)
T d1g6ha_ 221 YVMFNGQIIA-EGRGEEE 237 (254)
T ss_dssp EEEETTEEEE-EEESHHH
T ss_pred EEEeCCEEEE-EecHHHH
Confidence 9999999975 4776654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.8e-45 Score=371.29 Aligned_cols=220 Identities=18% Similarity=0.213 Sum_probs=168.6
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++||+++||+..+|+||||+|++||++||+||||||||||+++|+|+.. |.+|+|.+.++++.........
T Consensus 5 ~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~--- 79 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVIN--- 79 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHH---
T ss_pred eEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccccccccHHHHH---
Confidence 46999999999999999999999999999999999999999999999999865 5678888888887654332111
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-CCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL-GFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LS 322 (723)
+..+.++++.... .....+.+++... ...........+++..++..+ ++. ...++++.+||
T Consensus 80 ---------r~gi~~~~q~~~l------~~~ltv~en~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LS 141 (240)
T d1ji0a_ 80 ---------RMGIALVPEGRRI------FPELTVYENLMMG--AYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLS 141 (240)
T ss_dssp ---------HTTEEEECSSCCC------CTTSBHHHHHHGG--GTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSC
T ss_pred ---------HhcccccCccccc------CCcccHHHHHHHH--HHhcCCHHHHHHHHHHHHHHhhChH-HHHhCchhhCC
Confidence 1111222221110 1122233322111 111122344555666777776 564 45579999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEec
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYR 399 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~ 399 (723)
|||||||+|||||+.+|+||||||||+||||.++.+++++|+++ +.|||+||||++++..+||||++|++|+++ +.
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv-~~ 220 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LE 220 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EE
T ss_pred HHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EE
Confidence 99999999999999999999999999999999999999988765 679999999999999999999999999997 46
Q ss_pred CChhhHHh
Q 048654 400 GNFDDFES 407 (723)
Q Consensus 400 g~~~~~~~ 407 (723)
|+++++..
T Consensus 221 g~~~el~~ 228 (240)
T d1ji0a_ 221 GKASELLD 228 (240)
T ss_dssp EEHHHHHT
T ss_pred cCHHHHhc
Confidence 88877654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-43 Score=357.40 Aligned_cols=201 Identities=24% Similarity=0.386 Sum_probs=159.1
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~ 564 (723)
|+++||+|+|++...++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 6899999999766567999999999999999999999999999999999999999999999874 25999
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCC-----------CCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-----------PSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl-----------~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
++|+.. .+..++.+.+....+.. ..+.+...++..++ ..... .....|||||||||+||||
T Consensus 82 v~Q~~~---lf~~Ti~eNi~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~-~~g~~LSGGq~QRvalARa 153 (241)
T d2pmka1 82 VLQDNV---LLNRSIIDNISLANPGM----SVEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARA 153 (241)
T ss_dssp ECSSCC---CTTSBHHHHHCTTSTTC----CHHHHHHHHHHHTCHHHHTTSTTGGGSBCS-TTTTCCCHHHHHHHHHHHH
T ss_pred Eecccc---cCCccccccccccCccc----cHHHHHHHHHHHhhHHHHHhhhcchhhhcC-CCCCccCHHHHHHHhhhhh
Confidence 999752 12334444332221111 12223333322222 11122 2347899999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|+||||||||++||+.+...|++.|+++ +.|||+||||++.+. .| |||++|++|+|++ .|+++++..
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~-----D~i~vl~~G~Iv~-~G~~~ell~ 226 (241)
T d2pmka1 154 LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NA-----DRIIVMEKGKIVE-QGKHKELLS 226 (241)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TS-----SEEEEEETTEEEE-EECHHHHHH
T ss_pred hhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hC-----CEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999886 369999999999884 67 4999999999985 599998764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-42 Score=356.87 Aligned_cols=204 Identities=29% Similarity=0.419 Sum_probs=161.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
-|+++||+|+|+++..++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|++++. ..++
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 48999999999876667999999999999999999999999999999999999999999998873 2599
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHH---------hC--CCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLG---------KF--GLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---------~~--gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
|++|++.- ...+........... .. ..+.+..+++ .+ |+...... ....|||||||||+|||
T Consensus 93 ~v~Q~~~l---~~~ti~~n~~~~~~~--~~-~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 93 LVSQNVHL---FNDTVANNIAYARTE--EY-SREQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp EECSSCCC---CSSBHHHHHHTTTTS--CC-CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHH
T ss_pred EEeecccc---CCcchhhhhhhcCcc--cC-CHHHHHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHHHHHHHHHHH
Confidence 99997531 122322222211111 11 2233333333 33 33333332 34789999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|+||||||||++||+.+...|++.|+++ +.|||+||||++.+. .| |+|++|++|+|++ .|+++++.
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~-----D~v~vl~~G~Iv~-~G~~~eLl 238 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QA-----DEIVVVEDGIIVE-RGTHSELL 238 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TC-----SEEEEEETTEEEE-EECHHHHH
T ss_pred HHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hC-----CEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999999887 469999999999884 68 4999999999986 59999986
Q ss_pred HH
Q 048654 711 ED 712 (723)
Q Consensus 711 ~~ 712 (723)
+.
T Consensus 239 ~~ 240 (253)
T d3b60a1 239 AQ 240 (253)
T ss_dssp HH
T ss_pred hC
Confidence 53
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5e-43 Score=358.27 Aligned_cols=204 Identities=28% Similarity=0.386 Sum_probs=159.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
||+++||+|+|++. ..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+++
T Consensus 1 mle~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp CEEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 68999999999764 46899999999999999999999999999999999999999999998763 2589
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCC------c----CCCCCCCHHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH------L----TPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~------~----~~i~~LSGGqkqRv~lAra 633 (723)
|++|++. + +..+..+.+ ...... ......+...++..++..... . .....|||||||||+||||
T Consensus 80 ~v~Q~~~--l-f~~ti~eNi-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARa 153 (242)
T d1mv5a_ 80 FVSQDSA--I-MAGTIRENL-TYGLEG--DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (242)
T ss_dssp EECCSSC--C-CCEEHHHHT-TSCTTS--CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEccccc--c-CCcchhhhe-eccccc--ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHH
Confidence 9999753 1 222333322 111111 112233444444443322111 1 1234799999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|+||||||||++||+.+...+++.|+++ +.|||+||||++.+. .|| ||++|++|+|+ ..|+++++.+
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D-----~i~vl~~G~iv-~~G~~~eLl~ 226 (242)
T d1mv5a_ 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DAD-----KIYFIEKGQIT-GSGKHNELVA 226 (242)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCS-----EEEEEETTEEC-CCSCHHHHHH
T ss_pred HhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCC-----EEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999999887 469999999999886 584 99999999998 4699999865
Q ss_pred H
Q 048654 712 D 712 (723)
Q Consensus 712 ~ 712 (723)
.
T Consensus 227 ~ 227 (242)
T d1mv5a_ 227 T 227 (242)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-42 Score=355.24 Aligned_cols=205 Identities=28% Similarity=0.425 Sum_probs=160.1
Q ss_pred eEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 495 LLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 495 ~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
.|+++||+|+|+++ ...+|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 59999999999864 346899999999999999999999999999999999999999999999874 259
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHH--------HHHHHHHhC--CCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQE--------AVRAKLGKF--GLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~L~~~--gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
+|++|++.- +..++.+.+....... ..... .+...+..+ ++..... .....|||||||||+|||
T Consensus 91 ~~v~Q~~~l---f~~tv~eni~~g~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~-~~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 91 AAVGQEPQV---FGRSLQENIAYGLTQK--PTMEEITAAAVKSGAHSFISGLPQGYDTEVD-EAGSQLSGGQRQAVALAR 164 (251)
T ss_dssp EEECSSCCC---CSSBHHHHHHCSCSSC--CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCC-SSCSSSCHHHHHHHHHHH
T ss_pred hhccccccc---cCcchhhhhhhhhccc--chHHHHHHHHHHHHHHHHHHhccccchhhHh-ccCccCChhHceEEEEee
Confidence 999998531 1223333322111111 11111 112234444 3333333 334789999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||+.+|+||||||||++||+.+...+++.|.++ +.|||+||||++.+. .|| ||++|++|+|+. .|++++
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aD-----rI~vl~~G~iv~-~Gt~~e 237 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QAD-----HILFLEGGAIRE-GGTHQQ 237 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCS-----EEEEEETTEEEE-EECHHH
T ss_pred ccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCC-----EEEEEECCEEEE-ECCHHH
Confidence 999999999999999999999999999999765 359999999999885 584 999999999985 599999
Q ss_pred HHHH
Q 048654 709 YKED 712 (723)
Q Consensus 709 ~~~~ 712 (723)
+.++
T Consensus 238 Ll~~ 241 (251)
T d1jj7a_ 238 LMEK 241 (251)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.9e-42 Score=350.54 Aligned_cols=198 Identities=30% Similarity=0.472 Sum_probs=161.9
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEEc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRYS 566 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~~ 566 (723)
|++ ++.++|++- .+ ||||++. +|+++|+||||||||||+++|+|+++|++|+|.+++. .++||++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~ 76 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred EEE-EEEEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeec
Confidence 567 678899752 24 7999995 6899999999999999999999999999999998873 3589999
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|++. +.+++.+++. +.+. ........+++.++|+.+||.+... +++.+|||||||||+|||||+.+|+|||||
T Consensus 77 Q~~~l~~~ltV~enl~-~~l~---~~~~~~~~~~v~~~l~~~gl~~~~~-~~~~~LSGG~kQRvaiAral~~~P~illlD 151 (240)
T d2onka1 77 QDYALFPHLSVYRNIA-YGLR---NVERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLD 151 (240)
T ss_dssp SSCCCCTTSCHHHHHH-TTCT---TSCHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred cchhhcccchhhHhhh-hhhc---ccCHHHHHHHHHHHHHhcCcHhhhh-CChhhCCHHHHHHHHHHHHHhccCCceEec
Confidence 9752 3344444421 1111 1100112456889999999987554 667999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 645 EPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|||+|||+.++..+.+.|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++.
T Consensus 152 EPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~ad-----ri~vm~~G~ii~-~G~~~el~ 215 (240)
T d2onka1 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD-----EVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EecHHHHh
Confidence 999999999999999998776 4689999999999999995 999999999985 58998874
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.1e-42 Score=352.07 Aligned_cols=203 Identities=32% Similarity=0.437 Sum_probs=163.8
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
-|+++||+|+|++...++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 95 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 95 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence 49999999999876667999999999999999999999999999999999999999999998774 3599
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC-----------CCCcCCCCCCCHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS-----------HNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~-----------~~~~~~i~~LSGGqkqRv~lAr 632 (723)
|++|+.. .+..++.+.+....+.. ..+++.++++..++.. .... ....|||||||||+|||
T Consensus 96 ~v~Q~~~---lf~~Ti~eNi~~g~~~~----~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 96 LVQQDNI---LFSDTVKENILLGRPTA----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp EECSSCC---CCSSBHHHHHGGGCSSC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHH
T ss_pred eeecccc---CCCCCHHHHHhccCcCC----CHHHHHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHHHHHHHHHHH
Confidence 9999742 12234444332222221 2344555565555421 1111 23579999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+++|+||||||||++||+.+...|++.|.++. .|||+||||++.+. .| |||++|++|+|+. .|+++++.
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~-----D~ii~l~~G~iv~-~G~~~eLl 240 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HA-----DKIVVIENGHIVE-TGTHRELI 240 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TC-----SEEEEEETTEEEE-EECHHHHH
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hC-----CEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999998874 69999999999884 67 4999999999985 59999976
Q ss_pred HH
Q 048654 711 ED 712 (723)
Q Consensus 711 ~~ 712 (723)
+.
T Consensus 241 ~~ 242 (255)
T d2hyda1 241 AK 242 (255)
T ss_dssp HT
T ss_pred hC
Confidence 53
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-42 Score=352.02 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=159.8
Q ss_pred ceEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGK---ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~---~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.|+++||+|+|+++ .+|+||||+|++|+++|||||||||||||+++|+|++. |..|.|.+.++++...+..
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i~~~~~~---- 84 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHR---- 84 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHH----
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEecchhhhH----
Confidence 59999999999754 59999999999999999999999999999999999875 4678888888776543322
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH---HHhcCchHHHHHHHHHHHhC--CCCccccCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK---LQILGSDAAEAQASKILAGL--GFTKEMQGR 316 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 316 (723)
.+++.++++.+..... ...+.+++...... ............+.+++..+ |+.. ..++
T Consensus 85 ---------~~r~~i~~v~Q~~~lf-------~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~-~i~~ 147 (251)
T d1jj7a_ 85 ---------YLHRQVAAVGQEPQVF-------GRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDT-EVDE 147 (251)
T ss_dssp ---------HHHHHEEEECSSCCCC-------SSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGC-BCCS
T ss_pred ---------HHHHHhhhcccccccc-------CcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchh-hHhc
Confidence 2344455543322110 11112221100000 00000001122334566666 5543 3467
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
.+.+|||||||||+|||||+++|+||||||||++||+.+...+++.|.++ ++|||+||||++.+. .||||++|++
T Consensus 148 ~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~ 226 (251)
T d1jj7a_ 148 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEG 226 (251)
T ss_dssp SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEET
T ss_pred cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 78899999999999999999999999999999999999999999999754 579999999999886 4999999999
Q ss_pred CEEEEecCChhhHHh
Q 048654 393 QKLHFYRGNFDDFES 407 (723)
Q Consensus 393 G~i~~~~g~~~~~~~ 407 (723)
|+|+. .|+++++.+
T Consensus 227 G~iv~-~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIRE-GGTHQQLME 240 (251)
T ss_dssp TEEEE-EECHHHHHH
T ss_pred CEEEE-ECCHHHHHh
Confidence 99975 599887753
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=9.3e-42 Score=345.52 Aligned_cols=210 Identities=23% Similarity=0.293 Sum_probs=166.1
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|++ ++.++|++..+ ||||++. +++++|+||||||||||+++|+|+.. |.+|+|.+.+.++......
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~------- 68 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPE------- 68 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTT-------
T ss_pred EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHH-------
Confidence 4778 67999998775 8999995 68999999999999999999999865 5688898888887543221
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
++.++++.+.... .+...+.+++... +......+.++++.++|+.+|+.+ ..++++.+||||
T Consensus 69 --------~r~ig~v~Q~~~l------~~~ltV~enl~~~---l~~~~~~~~~~~v~~~l~~~gl~~-~~~~~~~~LSGG 130 (240)
T d2onka1 69 --------RRGIGFVPQDYAL------FPHLSVYRNIAYG---LRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGG 130 (240)
T ss_dssp --------TSCCBCCCSSCCC------CTTSCHHHHHHTT---CTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHH
T ss_pred --------HcCceeeccchhh------cccchhhHhhhhh---hcccCHHHHHHHHHHHHHhcCcHh-hhhCChhhCCHH
Confidence 1123333222111 1122344444321 223345566788999999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+.++..++++|+++ +.|||+||||++++..+||||++|++|+++. .|
T Consensus 131 ~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~-~G 209 (240)
T d2onka1 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KG 209 (240)
T ss_dssp HHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-Ee
Confidence 999999999999999999999999999999999999988654 6899999999999999999999999999975 58
Q ss_pred ChhhHH
Q 048654 401 NFDDFE 406 (723)
Q Consensus 401 ~~~~~~ 406 (723)
+++++.
T Consensus 210 ~~~el~ 215 (240)
T d2onka1 210 KLKELF 215 (240)
T ss_dssp CHHHHH
T ss_pred cHHHHh
Confidence 887764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-41 Score=345.63 Aligned_cols=214 Identities=26% Similarity=0.399 Sum_probs=157.8
Q ss_pred eEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 166 ITIDNFSVAAR--GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 166 I~l~nls~~y~--~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
|+++||+|+|+ ++++|+||||+|++|+++|||||||||||||+++|+|++. |..|.|.+.+.++...+..
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~------ 73 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPN------ 73 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHH------
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEecccchh------
Confidence 89999999994 4679999999999999999999999999999999999875 4678888888877544332
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchH-----HHHHHHHHHHhC--CCCccccCC
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDA-----AEAQASKILAGL--GFTKEMQGR 316 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~L~~l--gl~~~~~~~ 316 (723)
.+++.++++++..... ...+.+++.... .....+. ....+.+++..+ |+. ...+.
T Consensus 74 -------~lr~~i~~v~Q~~~lf-------~~Ti~eNi~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-t~i~~ 135 (241)
T d2pmka1 74 -------WLRRQVGVVLQDNVLL-------NRSIIDNISLAN---PGMSVEKVIYAAKLAGAHDFISELREGYN-TIVGE 135 (241)
T ss_dssp -------HHHHHEEEECSSCCCT-------TSBHHHHHCTTS---TTCCHHHHHHHHHHHTCHHHHTTSTTGGG-SBCST
T ss_pred -------hhhceEEEEecccccC-------CccccccccccC---ccccHHHHHHHHHHHhhHHHHHhhhcchh-hhcCC
Confidence 2344555554422110 112222211000 0011111 111223334443 222 23356
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+..|||||||||+|||||+++|+||||||||++||+.+...|++.|+++ ++|||+||||++.+. .||+|++|++|+
T Consensus 136 ~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~ 214 (241)
T d2pmka1 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGK 214 (241)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTE
T ss_pred CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCE
Confidence 77899999999999999999999999999999999999999999999875 579999999999885 599999999999
Q ss_pred EEEecCChhhHHh
Q 048654 395 LHFYRGNFDDFES 407 (723)
Q Consensus 395 i~~~~g~~~~~~~ 407 (723)
|+. .|+++++..
T Consensus 215 Iv~-~G~~~ell~ 226 (241)
T d2pmka1 215 IVE-QGKHKELLS 226 (241)
T ss_dssp EEE-EECHHHHHH
T ss_pred EEE-ECCHHHHHh
Confidence 975 599888753
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.2e-41 Score=345.43 Aligned_cols=217 Identities=24% Similarity=0.360 Sum_probs=158.6
Q ss_pred cceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++||+|+|++ .++|+||||+|++|+++|||||||||||||+++|+|++. |..|+|.+.+.++...+..
T Consensus 12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~---- 85 (253)
T d3b60a1 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLA---- 85 (253)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHH----
T ss_pred eEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcccchhhhh----
Confidence 35999999999975 469999999999999999999999999999999999875 4578888888776544332
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHH-----HHHHHHHHhC--CCCcccc
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAE-----AQASKILAGL--GFTKEMQ 314 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~L~~l--gl~~~~~ 314 (723)
.++..++++++.... ....+..++.. ........+... ..+.++++.+ |+.. ..
T Consensus 86 ---------~~r~~i~~v~Q~~~l-------~~~ti~~n~~~--~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t-~~ 146 (253)
T d3b60a1 86 ---------SLRNQVALVSQNVHL-------FNDTVANNIAY--ARTEEYSREQIEEAARMAYAMDFINKMDNGLDT-II 146 (253)
T ss_dssp ---------HHHHTEEEECSSCCC-------CSSBHHHHHHT--TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGS-BC
T ss_pred ---------hhhheEEEEeecccc-------CCcchhhhhhh--cCcccCCHHHHHHHHHHHhHHHHHHhccccchh-hh
Confidence 223334444332111 01111111100 000001111111 1123455555 4543 33
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+..+..|||||||||+|||||+.+|+||||||||++||+.+...+++.|+++ ++|||+||||++.+. .||+|++|++
T Consensus 147 ~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~ 225 (253)
T d3b60a1 147 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVED 225 (253)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEET
T ss_pred cCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEEC
Confidence 5678899999999999999999999999999999999999999999999876 689999999999886 6999999999
Q ss_pred CEEEEecCChhhHHh
Q 048654 393 QKLHFYRGNFDDFES 407 (723)
Q Consensus 393 G~i~~~~g~~~~~~~ 407 (723)
|+|+. .|+++++..
T Consensus 226 G~Iv~-~G~~~eLl~ 239 (253)
T d3b60a1 226 GIIVE-RGTHSELLA 239 (253)
T ss_dssp TEEEE-EECHHHHHH
T ss_pred CEEEE-ECCHHHHHh
Confidence 99975 589887653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.4e-41 Score=343.13 Aligned_cols=213 Identities=21% Similarity=0.292 Sum_probs=150.8
Q ss_pred ceEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++||+|+|++ +++|+||||+|++|+++|||||||||||||+++|+|++.| ..|+|.+.++++...+...
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~----- 73 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLEN----- 73 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSC-----
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEeccccHHH-----
Confidence 4899999999954 6899999999999999999999999999999999998765 4567777777665332211
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc----------cc
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK----------EM 313 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~ 313 (723)
+++.++++.+.... ....+.+++.. ..........+...++..++.. ..
T Consensus 74 --------~r~~i~~v~Q~~~l-------f~~ti~eNi~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (242)
T d1mv5a_ 74 --------WRSQIGFVSQDSAI-------MAGTIRENLTY------GLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132 (242)
T ss_dssp --------CTTTCCEECCSSCC-------CCEEHHHHTTS------CTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCE
T ss_pred --------HHhheEEEcccccc-------CCcchhhheec------ccccccchhhHHHHHHHHHhhhhhccCccccccc
Confidence 12223333221110 01111111100 0000001112222222222110 11
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
.+..+..|||||||||+|||||+.+|+||||||||++||+.+...+++.|+++ ++|||+||||++.+.. ||+|++|+
T Consensus 133 i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~ 211 (242)
T d1mv5a_ 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIE 211 (242)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEEE
Confidence 23456789999999999999999999999999999999999999999988865 6899999999999875 99999999
Q ss_pred CCEEEEecCChhhHHh
Q 048654 392 DQKLHFYRGNFDDFES 407 (723)
Q Consensus 392 ~G~i~~~~g~~~~~~~ 407 (723)
+|+|+ +.|+++++..
T Consensus 212 ~G~iv-~~G~~~eLl~ 226 (242)
T d1mv5a_ 212 KGQIT-GSGKHNELVA 226 (242)
T ss_dssp TTEEC-CCSCHHHHHH
T ss_pred CCEEE-EECCHHHHHh
Confidence 99997 5699887754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.3e-40 Score=342.23 Aligned_cols=211 Identities=23% Similarity=0.344 Sum_probs=157.2
Q ss_pred ceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 165 DITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 165 ~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
.|+++||+|+|++ .++|+||||+|++|+++||+|+||||||||+++|+|++. |..|.|.+.+.++...+..
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~----- 88 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTG----- 88 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHH-----
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCEEcccCCHH-----
Confidence 5999999999965 579999999999999999999999999999999999875 4678888888776543322
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC-----------CCc
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLG-----------FTK 311 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lg-----------l~~ 311 (723)
.++..++++++.... ....+.+++. ........+++.++++..+ +..
T Consensus 89 --------~lr~~i~~v~Q~~~l-------f~~Ti~eNi~-------~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t 146 (255)
T d2hyda1 89 --------SLRNQIGLVQQDNIL-------FSDTVKENIL-------LGRPTATDEEVVEAAKMANAHDFIMNLPQGYDT 146 (255)
T ss_dssp --------HHHHTEEEECSSCCC-------CSSBHHHHHG-------GGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred --------HhhheeeeeeccccC-------CCCCHHHHHh-------ccCcCCCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 234455555443211 0112222221 1001111223333343333 322
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 312 ~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
. .+..+..|||||||||+|||||+++|+||||||||++||+.+...|++.|.++ ++|||+||||++.+. .||+|++
T Consensus 147 ~-i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~ 224 (255)
T d2hyda1 147 E-VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVV 224 (255)
T ss_dssp B-CCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEE
T ss_pred h-hcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEE
Confidence 2 23456789999999999999999999999999999999999999999999866 579999999999886 5999999
Q ss_pred EeCCEEEEecCChhhHHh
Q 048654 390 LHDQKLHFYRGNFDDFES 407 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~~~ 407 (723)
|++|+|+. .|+++++..
T Consensus 225 l~~G~iv~-~G~~~eLl~ 241 (255)
T d2hyda1 225 IENGHIVE-TGTHRELIA 241 (255)
T ss_dssp EETTEEEE-EECHHHHHH
T ss_pred EECCEEEE-ECCHHHHHh
Confidence 99999975 589887654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-40 Score=336.12 Aligned_cols=198 Identities=29% Similarity=0.405 Sum_probs=161.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~i 562 (723)
.+|+++||+++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++++. ..
T Consensus 2 ~il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 2 IVMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred eEEEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 378999997654 589999999999999999999999999999999975 689999988752 36
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc------
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS------ 636 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~------ 636 (723)
+|++|.....+ ......++...... ....+.+.+++..+++..... +++.+|||||||||+|||||++
T Consensus 75 ~~~~~~~~~~~--~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~-~~~~~LSgG~~Qrv~iA~al~~~~p~~~ 148 (231)
T d1l7vc_ 75 AYLSQQQTPPF--ATPVWHYLTLHQHD---KTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQAN 148 (231)
T ss_dssp EEECSCCCCCS--SCBHHHHHHHHCSC---TTCHHHHHHHHHHTTCTTTTT-SBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred eeeeccccCCc--cccHHHHhhhccch---hhHHHHHHHHHHhcCCHhHhC-cChhhcCHHHHHHHHHHHHHHhhCcccC
Confidence 78887643222 22222222211111 123566788999999987654 6779999999999999999997
Q ss_pred -CCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 637 -KPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 637 -~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++.++|| ||++|++|+|+ +.|+++++.
T Consensus 149 p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~d-----ri~vl~~G~iv-~~G~~~ev~ 220 (231)
T d1l7vc_ 149 PAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAH-----RAWLLKGGKML-ASGRREEVL 220 (231)
T ss_dssp TTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCS-----BCCBEETTEEC-CCSBHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCC-----EEEEEECCEEE-EECCHHHHh
Confidence 67999999999999999999999998876 3589999999999999995 99999999997 579998874
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-39 Score=327.45 Aligned_cols=209 Identities=24% Similarity=0.279 Sum_probs=158.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++| +|+||||+|++||++||+||||||||||+++|+|+. ++.|+|.+.++++.......+
T Consensus 3 il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~---~~~G~I~~~g~~i~~~~~~~~----- 70 (231)
T d1l7vc_ 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGKGSIQFAGQPLEAWSATKL----- 70 (231)
T ss_dssp EEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC---CCSSEEEESSSBGGGSCHHHH-----
T ss_pred EEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCceEEEECCEECCcCCHHHH-----
Confidence 58999998765 699999999999999999999999999999999963 467888888877654333211
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.....++.+... .+. ...+...+ .+.. ......+.+.++++.+++.+ ..++++.+||||
T Consensus 71 --------~~~~~~~~~~~~-----~~~-~~~v~~~~-----~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~LSgG 129 (231)
T d1l7vc_ 71 --------ALHRAYLSQQQT-----PPF-ATPVWHYL-----TLHQ-HDKTRTELLNDVAGALALDD-KLGRSTNQLSGG 129 (231)
T ss_dssp --------HHHEEEECSCCC-----CCS-SCBHHHHH-----HHHC-SCTTCHHHHHHHHHHTTCTT-TTTSBGGGCCHH
T ss_pred --------Hhhceeeecccc-----CCc-cccHHHHh-----hhcc-chhhHHHHHHHHHHhcCCHh-HhCcChhhcCHH
Confidence 111112211110 010 11111111 1111 12233567888999999975 457999999999
Q ss_pred HHHHHHHHHHHcc-------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 325 WRMRISLARALFV-------QPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 325 qrQRvaLArAL~~-------~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
|||||+|||||++ +|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+
T Consensus 130 ~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~ 209 (231)
T d1l7vc_ 130 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGK 209 (231)
T ss_dssp HHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTE
T ss_pred HHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCE
Confidence 9999999999997 77999999999999999999998888754 6899999999999999999999999999
Q ss_pred EEEecCChhhHHh
Q 048654 395 LHFYRGNFDDFES 407 (723)
Q Consensus 395 i~~~~g~~~~~~~ 407 (723)
++ +.|+.+++..
T Consensus 210 iv-~~G~~~ev~~ 221 (231)
T d1l7vc_ 210 ML-ASGRREEVLT 221 (231)
T ss_dssp EC-CCSBHHHHSC
T ss_pred EE-EECCHHHHhC
Confidence 96 5688877643
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.1e-38 Score=313.25 Aligned_cols=183 Identities=22% Similarity=0.324 Sum_probs=142.8
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------eeEEEEccc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------LRIGRYSQH 568 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------~~ig~~~q~ 568 (723)
.|+++||+++|+. ++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+++|++|.
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~ 78 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 78 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred eEEEEEEEEEeCC---eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeec
Confidence 4899999999952 5899999999999999999999999999999999999999999999873 368999986
Q ss_pred cc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC
Q 048654 569 FV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646 (723)
Q Consensus 569 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP 646 (723)
.. ..+++.++ +......+... ....++...++.+++.+. .+++.+|||||||||+|||||+.+|+|||||||
T Consensus 79 ~~~~~~~t~~~~-l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~~~LSgG~~qrv~ia~al~~~~~llllDEP 152 (200)
T d1sgwa_ 79 IIVPRKISVEDY-LKAVASLYGVK---VNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 152 (200)
T ss_dssp CCCCTTSBHHHH-HHHHHHHTTCC---CCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred ccCCCCcCHHHH-HHHHHHhcCCc---cCHHHHHHHHHHcCCccc--ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCc
Confidence 42 23333333 22222233211 124557788888888643 246789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcC---c-eEEEEecCHHHHHHhcCcCCCcEEEEEE
Q 048654 647 TNHLDMQSIDALADALDEFT---G-GVVLVSHDSRLISRVCDDEERSEIWVVE 695 (723)
Q Consensus 647 T~~LD~~s~~~l~~~L~~~~---~-tVIivSHD~~~~~~~~d~~~~drv~vl~ 695 (723)
|+|||+.++..+++.|.++. + +||+++||+ .+|| ++.+|+
T Consensus 153 t~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D-----~~~~l~ 196 (200)
T d1sgwa_ 153 VVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCD-----VNENLH 196 (200)
T ss_dssp TTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSS-----EEEEGG
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcc-----hhhhee
Confidence 99999999999998888763 3 344444554 3675 777764
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-37 Score=323.49 Aligned_cols=195 Identities=23% Similarity=0.372 Sum_probs=145.3
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCc
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~ 575 (723)
|.++|+++ .+ .++|+||||+|++||++||+||||||||||+++|+|+++|++|.|.++++ ++|++|... + .
T Consensus 39 i~~~~~~~--~g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~--i~~v~Q~~~--l-~ 109 (281)
T d1r0wa_ 39 VSFSHLCL--VG--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--VSFCSQFSW--I-M 109 (281)
T ss_dssp -CHHHHHH--TT--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC--EEEECSSCC--C-C
T ss_pred EEEEEcCC--CC--CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE--EEEEecccc--c-c
Confidence 44455543 33 35999999999999999999999999999999999999999999999874 899999642 1 2
Q ss_pred cccHHHHHHhhCCCCCCCcHHHHHHHHHHhCC-------CCCCC---CcCCCCCCCHHHHHHHHHHHHHccCCCeEEecc
Q 048654 576 EETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-------LPSHN---HLTPIAKLSGGQKARVVFTSISMSKPHILLLDE 645 (723)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g-------l~~~~---~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDE 645 (723)
..++.+.+. +.... .......++.... +.... ......+|||||||||+|||||+.+|+||||||
T Consensus 110 ~~tv~eni~-~~~~~----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 110 PGTIKENII-FGVSY----DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp SEEHHHHHT-TTSCC----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Cceeecccc-ccccc----cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 224333332 21111 1222333333222 21111 112345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 646 PTNHLDMQSIDALADAL-DEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L-~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||++||+.+...+++.+ ..+ +.|||+|||+++.+ +.|| ||++|++|+|+. .|+++++..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aD-----rI~vl~~G~i~~-~Gt~~eL~~ 246 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKAD-----KILILHQGSSYF-YGTFSELQS 246 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCC-----EEEEEECCEEEE-ECCHHHHhc
Confidence 99999999999988753 433 36999999999887 5784 999999999975 599998865
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.5e-37 Score=320.60 Aligned_cols=199 Identities=25% Similarity=0.340 Sum_probs=137.6
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE----EEEEeeeeecCCChHHHHH
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI----DVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~----~i~~~~q~~~~~~~~~~~~ 241 (723)
|+++|++ |.+++||+||||+|++|+++||+||||||||||+++|+|++.|..|.+ .+.|+.|.......+..++
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~en 116 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKEN 116 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHH
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeecc
Confidence 3344443 478999999999999999999999999999999999999876654432 2444545443333333322
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC--CCCccccCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL--GFTKEMQGRPTK 319 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~ 319 (723)
+. +... ... .....+.. . ......+..+ ++ ....++.+.
T Consensus 117 i~--------------~~~~----------~~~----~~~~~~~~---~-------~~~~~~i~~l~~~~-~~~~~~~~~ 157 (281)
T d1r0wa_ 117 II--------------FGVS----------YDE----YRYKSVVK---A-------CQLQQDITKFAEQD-NTVLGEGGV 157 (281)
T ss_dssp HT--------------TTSC----------CCH----HHHHHHHH---H-------TTCHHHHTTSTTGG-GCEECTTCT
T ss_pred cc--------------cccc----------ccc----hHHHHHHH---H-------HHhHHHHHhchhhh-hhhhhhhcc
Confidence 21 0000 000 00000000 0 0111222222 11 123356778
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL-CRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L-~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
+|||||||||+|||||+.+|+||||||||++||+.+...+++.+ ..+ ++|+|+|||+++.+. .||||++|++|+|+
T Consensus 158 ~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSY 236 (281)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999988753 333 579999999999875 69999999999997
Q ss_pred EecCChhhHHh
Q 048654 397 FYRGNFDDFES 407 (723)
Q Consensus 397 ~~~g~~~~~~~ 407 (723)
. .|+++++..
T Consensus 237 ~-~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 F-YGTFSELQS 246 (281)
T ss_dssp E-EECHHHHHH
T ss_pred E-ECCHHHHhc
Confidence 5 599888753
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.5e-36 Score=298.44 Aligned_cols=192 Identities=20% Similarity=0.290 Sum_probs=138.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++||+++|+ +++|+||||+|++|+++||+||||||||||+++|+|++. |.+|+|.+.++++....
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~~~--------- 69 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITKVK--------- 69 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGGG---------
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehhHhc---------
Confidence 389999999995 689999999999999999999999999999999999865 46778888776653210
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
..+.++++.... .....+.+.+.. ...+. +......++.+.++.+++.+ . ++++.+||||
T Consensus 70 ---------~~i~~~~~~~~~------~~~~t~~~~l~~-~~~~~--~~~~~~~~~~~~l~~~~~~~-~-~~~~~~LSgG 129 (200)
T d1sgwa_ 70 ---------GKIFFLPEEIIV------PRKISVEDYLKA-VASLY--GVKVNKNEIMDALESVEVLD-L-KKKLGELSQG 129 (200)
T ss_dssp ---------GGEEEECSSCCC------CTTSBHHHHHHH-HHHHT--TCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHH
T ss_pred ---------CcEEEEeecccC------CCCcCHHHHHHH-HHHhc--CCccCHHHHHHHHHHcCCcc-c-ccccCcCCCc
Confidence 111112211111 011122222221 12222 22222455777888888753 3 4678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
|||||+|||||+.+|+||||||||+|||+.++..+++.|.++ +.+||+++|++ .+||++.+|++
T Consensus 130 ~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 130 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 999999999999999999999999999999998888777654 34566666665 47999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.63 E-value=3.8e-18 Score=163.41 Aligned_cols=170 Identities=11% Similarity=0.109 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccc--cCccccHHHHHHhhCCCCCCCcHHHHHHHH
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAK 602 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (723)
.++|+||||||||||+++|+|.++|..|.+...+.....+-.+..... ....... ......... . .
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~-~------- 69 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI---FSSKFFTSK-K-L------- 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEE---EEETTCCCS-S-E-------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHH---Hhhhhhhhh-h-h-------
Confidence 589999999999999999999999999998765432111111100000 0000000 000000000 0 0
Q ss_pred HHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCC--CCHHHHHHHHHHHHHcCceEEEEecCHHHHH
Q 048654 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNH--LDMQSIDALADALDEFTGGVVLVSHDSRLIS 680 (723)
Q Consensus 603 L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~--LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~ 680 (723)
...++.. .....+|+|++++.++++++..+|++|++|||+.. .+......+.++++....+||+++|+....
T Consensus 70 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~- 143 (178)
T d1ye8a1 70 VGSYGVN-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH- 143 (178)
T ss_dssp ETTEEEC-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCS-
T ss_pred hhhhhcC-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHH-
Confidence 0111111 11235899999999999999999999999997544 456677778888887778999999997654
Q ss_pred HhcCcCCCcEEEEEECCeEEecC-CCHHHHHHHHHHHH
Q 048654 681 RVCDDEERSEIWVVENGTVSRFP-GTFEEYKEDLQREI 717 (723)
Q Consensus 681 ~~~d~~~~drv~vl~~G~i~~~~-g~~~~~~~~~~~~~ 717 (723)
.+| ++++.+.+|+++... .+.+.+.+++++.+
T Consensus 144 ~~~-----~~i~~~~~~~i~~v~~~nrd~~~~~i~~~l 176 (178)
T d1ye8a1 144 PLV-----KEIRRLPGAVLIELTPENRDVILEDILSLL 176 (178)
T ss_dssp HHH-----HHHHTCTTCEEEECCTTTTTTHHHHHHHHS
T ss_pred Hhh-----ceEEEEeCCEEEEECCccHHHHHHHHHHHH
Confidence 456 478888999987542 22344555555543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.44 E-value=4.3e-15 Score=141.73 Aligned_cols=79 Identities=13% Similarity=0.000 Sum_probs=66.6
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCC--CCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNH--LDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~--LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
..+|+|+++|.++++++..+|++|++|||+.. .+......|.++++..+.+||+++|+... ..+|+++..+.+|+++
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEEE
T ss_pred hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEEE
Confidence 35899999999999999999999999997544 45566777888887778899999999764 4578999999999996
Q ss_pred Ee
Q 048654 397 FY 398 (723)
Q Consensus 397 ~~ 398 (723)
..
T Consensus 159 ~v 160 (178)
T d1ye8a1 159 EL 160 (178)
T ss_dssp EC
T ss_pred EE
Confidence 43
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=1.1e-09 Score=112.97 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=64.1
Q ss_pred CCCCCCChHHHHHHHHHHH----HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 316 RPTKSFSGGWRMRISLARA----LFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArA----L~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
.....+|+|+|+.+.++.. ....|.++++|||-+||+|.....|.++|++. +.-||++||.+.++.. +|+++.
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~-~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA-ADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG-CSEEEE
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh-cccEEE
Confidence 3467899999999877665 45677999999999999999999999999865 4689999999998864 799865
Q ss_pred --EeCC
Q 048654 390 --LHDQ 393 (723)
Q Consensus 390 --L~~G 393 (723)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 5555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=1.3e-08 Score=108.80 Aligned_cols=74 Identities=20% Similarity=0.392 Sum_probs=61.9
Q ss_pred CCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEE
Q 048654 316 RPTKSFSGGWRMRISLARAL----FVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL----~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii 388 (723)
.++..||||||.+++||-.| +.+++++|||||+++||+..+..+.++|.+. +..+|+|||++.++.. ||+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh-cccEE
Confidence 45577899999998876544 5678899999999999999999999999765 3469999999998875 89987
Q ss_pred EE
Q 048654 389 HL 390 (723)
Q Consensus 389 ~L 390 (723)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=3.4e-08 Score=105.40 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=60.9
Q ss_pred CCCCCCCHHHHHHHHHHHHH----ccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCC
Q 048654 615 TPIAKLSGGQKARVVFTSIS----MSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEE 687 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral----~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~ 687 (723)
.++..||||||.+++||-.+ ..+++++|||||++|||+..+..+.++|.++. ..+|+|||+..++. .||
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad--- 403 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSD--- 403 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCS---
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcc---
Confidence 56678999999998876544 45778999999999999999999999998763 35999999999775 564
Q ss_pred CcEEEEE
Q 048654 688 RSEIWVV 694 (723)
Q Consensus 688 ~drv~vl 694 (723)
++|.+
T Consensus 404 --~~~~V 408 (427)
T d1w1wa_ 404 --ALVGV 408 (427)
T ss_dssp --EEEEE
T ss_pred --cEEEE
Confidence 66655
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.06 E-value=2.6e-05 Score=76.42 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=35.4
Q ss_pred ccCCCEEEEeCCCCCCCHHHH----HHHHHHHhhcCcEEEEEeCCHHHHH
Q 048654 336 FVQPTLLLLDEPTNHLDLRAV----LWLEEYLCRWKKTLVVVSHDRDFLN 381 (723)
Q Consensus 336 ~~~P~lLLLDEPT~~LD~~~~----~~L~~~L~~~~~TVIivsHdl~~l~ 381 (723)
+.+..++|+||+..|=++..- ..+.+.|.+.+..++++||..+...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 455569999999999999643 3455666666788999999987655
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.99 E-value=4.7e-05 Score=74.47 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHH----HHHHHHcCceEEEEecCHHHHH
Q 048654 624 QKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL----ADALDEFTGGVVLVSHDSRLIS 680 (723)
Q Consensus 624 qkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l----~~~L~~~~~tVIivSHD~~~~~ 680 (723)
|-+++.-..-.+.+..++|+||+..|=++.....+ .+.|.+.+..++++||..++..
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 33333333333455669999999999999765544 4444455667999999987654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=1e-05 Score=82.17 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=62.7
Q ss_pred CCCCCCCHHHHHHHHHHHHH----ccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCC
Q 048654 615 TPIAKLSGGQKARVVFTSIS----MSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEER 688 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral----~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~ 688 (723)
..+..||+|||+.+.++..+ ...+.++++|||-+||+|..+..|.+.|++.. ..||++||...++. .+|
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d---- 289 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AAD---- 289 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCS----
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcc----
Confidence 34678999999998776653 45678999999999999999999999998875 46999999999885 554
Q ss_pred cEEEE--EECC
Q 048654 689 SEIWV--VENG 697 (723)
Q Consensus 689 drv~v--l~~G 697 (723)
+++. +++|
T Consensus 290 -~~~~v~~~~g 299 (308)
T d1e69a_ 290 -LLHGVTMVNG 299 (308)
T ss_dssp -EEEEEEESSS
T ss_pred -cEEEEEEeCC
Confidence 6765 4455
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=6e-05 Score=74.21 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=30.5
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHH----HHHHHh-hcCcEEEEEeCCHHHH
Q 048654 336 FVQPTLLLLDEPTNHLDLRAVLW----LEEYLC-RWKKTLVVVSHDRDFL 380 (723)
Q Consensus 336 ~~~P~lLLLDEPT~~LD~~~~~~----L~~~L~-~~~~TVIivsHdl~~l 380 (723)
+.+..++|+||+..|=++..... +.++|. +.+..+|++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 44556999999999999865433 333343 3345788999976543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.00024 Score=69.70 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=32.5
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHH-HHHc---C-ceEEEEecCHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADA-LDEF---T-GGVVLVSHDSRLIS 680 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~-L~~~---~-~tVIivSHD~~~~~ 680 (723)
.+.+..++|+||+..|=++.....+..+ |..+ . ..+|++||..+...
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence 3555569999999999998776665443 3223 2 36888888766543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=7.5e-06 Score=76.76 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=28.8
Q ss_pred eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 180 vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+.+.+|.+.+| +++|+|+|||||||||.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 466788888876 999999999999999999973
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=1.3e-05 Score=75.17 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=28.0
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
+.+.+|++.+| +++|+|||||||||||.+|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 67788888776 899999999999999999963
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.89 E-value=0.00023 Score=66.53 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=22.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
|.++.|+||||||||||++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 889999999999999999999754
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.0035 Score=61.74 Aligned_cols=24 Identities=46% Similarity=0.529 Sum_probs=21.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHH
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
.+|+++.|.|+.|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999987665
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00023 Score=64.74 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
+++|+|++|||||||++.|..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999985
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00027 Score=64.29 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
+++|+|++|||||||++.|...+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999875543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.00028 Score=65.96 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
|.++.|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999876653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.69 E-value=0.00037 Score=63.74 Aligned_cols=25 Identities=40% Similarity=0.384 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.|+++.|+||+||||||+.+.|+..
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999854
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.69 E-value=0.00044 Score=67.15 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=26.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEE
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~ 555 (723)
+|..++++|++|+|||||+|.|.|......|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999998777778775
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.65 E-value=0.00046 Score=63.04 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.|.+|.|+||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00041 Score=63.23 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00021 Score=65.52 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
.|.|+||+|+|||||++.|+..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 588999999999999999999887655444
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.55 E-value=0.00059 Score=62.25 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+|-++.|+|++||||||+.+.|+-
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999984
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.50 E-value=0.00033 Score=64.32 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
.+++|+|++|||||||++-|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 378999999999999999888776643
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.00053 Score=62.69 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHhCC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
+++.|+||+|+|||||++.|+..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.45 E-value=0.00069 Score=62.01 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.9
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+++|+|++|||||||++-|...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 47899999999999999877643
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.45 E-value=0.00059 Score=62.44 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.9
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.++|+||.|||||||++.|+-.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999854
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.43 E-value=0.00084 Score=65.13 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+|+.++++|+||+|||||++.|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCCHHHHHHhhcch
Confidence 4788999999999999999999874
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00074 Score=61.44 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.33 E-value=0.0064 Score=58.48 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
|++|.++.|.|++|||||||+.-|+-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999987763
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00096 Score=63.87 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHh
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
+|.++.|+||+|+|||||++.|.-
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999998874
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.31 E-value=0.001 Score=60.63 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|-.+.|.||+||||||+.+.|+-.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999853
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.28 E-value=0.00092 Score=60.87 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998544
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.28 E-value=0.00087 Score=61.23 Aligned_cols=24 Identities=46% Similarity=0.617 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
..|+|+||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.24 E-value=0.0012 Score=60.05 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
..++.|.|++||||||+.+.|+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999965
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.23 E-value=0.00044 Score=67.38 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=22.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEE
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~ 555 (723)
+|.+++++|++|+|||||+|.|.|......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4788999999999999999999998777778775
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0011 Score=59.17 Aligned_cols=22 Identities=50% Similarity=0.590 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.|+||+||||||+.+.|+-.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.16 E-value=0.0012 Score=58.85 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=18.9
Q ss_pred cEEEEECCCCccHHHHHHHHH
Q 048654 192 KRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~ 212 (723)
+++.|+|++|||||||++.|.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999875
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.12 E-value=0.0014 Score=59.56 Aligned_cols=27 Identities=30% Similarity=0.662 Sum_probs=23.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
++|-.|+|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998754
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.09 E-value=0.0012 Score=61.20 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++||.|++|||||||.+.|.-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.04 E-value=0.0016 Score=59.57 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHHh
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G 213 (723)
++++|.|+.||||||+++.|+-
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.04 E-value=0.0015 Score=58.94 Aligned_cols=23 Identities=52% Similarity=0.670 Sum_probs=20.8
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++.|+||.||||||+.+.|+..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999964
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0011 Score=61.70 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHh
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
+|-++.|+|++|||||||.+.|+-
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999999984
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0018 Score=61.93 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=23.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.|.++.|+||+|+|||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999876544
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0016 Score=58.08 Aligned_cols=23 Identities=52% Similarity=0.728 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.|.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999998754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.97 E-value=0.0016 Score=58.98 Aligned_cols=21 Identities=48% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.++|+||.||||||+.+.|+-
T Consensus 6 ~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999984
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.95 E-value=0.002 Score=58.46 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.034 Score=54.15 Aligned_cols=24 Identities=54% Similarity=0.587 Sum_probs=21.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
-+|+++.|.|+.|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986665
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.94 E-value=0.0019 Score=59.00 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
.+|+|.|+.||||||+.+.|+-.+...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999998655443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.94 E-value=0.0018 Score=57.74 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~G 545 (723)
.+|.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999997753
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.90 E-value=0.0017 Score=60.10 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
+|||.|+.|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986544
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.90 E-value=0.0016 Score=60.90 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.|+|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999853
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.85 E-value=0.00084 Score=65.34 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+|..++++|+||+|||||++.|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred ccceEEEECCCCccHHHHHHhhccH
Confidence 4789999999999999999999874
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.84 E-value=0.0021 Score=57.99 Aligned_cols=25 Identities=44% Similarity=0.577 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.++.|+||.||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.83 E-value=0.016 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=24.4
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
=|+.|.++-|.||+|||||||+-.++.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHH
Confidence 378999999999999999999988874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.79 E-value=0.0019 Score=58.38 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.|+|+||.||||||+.+.|+--
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999753
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.78 E-value=0.002 Score=60.26 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|+.|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999975
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.66 E-value=0.0025 Score=59.60 Aligned_cols=21 Identities=52% Similarity=0.651 Sum_probs=18.8
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.|+||+|||||||++.|+-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999998743
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.64 E-value=0.0026 Score=56.59 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999984
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0017 Score=60.17 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=23.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.56 E-value=0.0022 Score=58.59 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
-+++|||+.|||||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.56 E-value=0.0026 Score=58.57 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.52 E-value=0.0031 Score=60.55 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.51 E-value=0.0031 Score=60.62 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0036 Score=58.20 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred cEEEEECCCCccHHHHHHHHHh
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G 213 (723)
..+.|+||+|+|||||++.|..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.48 E-value=0.0031 Score=59.17 Aligned_cols=20 Identities=60% Similarity=0.703 Sum_probs=18.2
Q ss_pred EEEECCCCccHHHHHHHHHh
Q 048654 194 YGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G 213 (723)
+.|+||+|||||||++.|.-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.46 E-value=0.0036 Score=57.10 Aligned_cols=23 Identities=48% Similarity=0.556 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.46 E-value=0.0032 Score=58.75 Aligned_cols=23 Identities=48% Similarity=0.797 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
|.|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999976543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0037 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHhCC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.++|||++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0035 Score=59.50 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++||.|++|||||||.+.|+-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988643
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0036 Score=57.24 Aligned_cols=22 Identities=59% Similarity=0.750 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.41 E-value=0.0022 Score=59.43 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
-|||+|+.++|||||++.|+|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.39 E-value=0.0036 Score=58.36 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHh
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
..++.|+||.||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.38 E-value=0.0038 Score=56.96 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|+.|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.38 E-value=0.0027 Score=57.97 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|||++|+|||||++.|.+-
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0038 Score=56.08 Aligned_cols=25 Identities=56% Similarity=0.772 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
|=.|+|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999863
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0049 Score=57.18 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=24.0
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
|++|+++.|.||+|||||||+--++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999988774
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.37 E-value=0.0039 Score=57.50 Aligned_cols=22 Identities=50% Similarity=0.709 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.|||+|..|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.34 E-value=0.0033 Score=57.79 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||+.|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.32 E-value=0.0038 Score=55.87 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.++|+|..|+|||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0046 Score=57.46 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
...+.|+||+|+|||||++.|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999988543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.30 E-value=0.0043 Score=57.08 Aligned_cols=22 Identities=64% Similarity=0.688 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.30 E-value=0.0025 Score=58.98 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=19.7
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+||||+.++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.30 E-value=0.0044 Score=55.06 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.|+|+.|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.30 E-value=0.004 Score=55.40 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+|.|+|+.|+|||||++.|++-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999764
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.0043 Score=56.72 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999975
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.30 E-value=0.0044 Score=55.44 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999875
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.27 E-value=0.0047 Score=57.40 Aligned_cols=25 Identities=44% Similarity=0.537 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
++|=.+.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999993
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.25 E-value=0.0043 Score=57.87 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+..+|+|+||.||||||+.+.|+--
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999853
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.25 E-value=0.0042 Score=56.49 Aligned_cols=21 Identities=43% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.|+|+.||||||+.++|+-.
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999843
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0043 Score=58.79 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
+|||.|+.|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999976553
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.23 E-value=0.0042 Score=58.22 Aligned_cols=21 Identities=57% Similarity=0.857 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl 546 (723)
|.|+||+|||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.21 E-value=0.0048 Score=56.90 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+||+|..|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999975
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.17 E-value=0.0043 Score=56.77 Aligned_cols=23 Identities=35% Similarity=0.261 Sum_probs=20.3
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++.|.|++||||||+++.|+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999999999864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0044 Score=58.11 Aligned_cols=23 Identities=43% Similarity=0.782 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.|+|+|+.|||||||++.|+|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.17 E-value=0.005 Score=56.56 Aligned_cols=22 Identities=41% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|..|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.15 E-value=0.0043 Score=56.76 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+.|+|++||||||+.+.|+-
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 466999999999999999973
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.12 E-value=0.0057 Score=56.82 Aligned_cols=25 Identities=44% Similarity=0.647 Sum_probs=22.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
++|-++.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3677899999999999999999984
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.0052 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+-.++.|+||.||||||+.+.|+-.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999954
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.09 E-value=0.0033 Score=57.90 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
|||+|..|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999854
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.08 E-value=0.0054 Score=57.43 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||+.|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999975
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.07 E-value=0.0052 Score=55.87 Aligned_cols=22 Identities=50% Similarity=0.697 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+.|+|+.||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998754
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0056 Score=54.89 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=21.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHhCC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
|=.++|+|+.|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3368999999999999999999763
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.99 E-value=0.0041 Score=58.15 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+..+.++.|+||.||||||+.+.|+-.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999853
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.97 E-value=0.0057 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999987664
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.96 E-value=0.0038 Score=57.51 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.8
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+||+|..|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.0076 Score=55.76 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=24.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
-|.+|+++.|.||+|+|||||+..++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999999999877764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.93 E-value=0.0047 Score=57.40 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++.|+||.||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999984
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.93 E-value=0.0059 Score=55.49 Aligned_cols=21 Identities=48% Similarity=0.417 Sum_probs=18.6
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.|+|+.||||||+.++|+-.
T Consensus 4 IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 668899999999999999843
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.93 E-value=0.0061 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
-.++.|+||.||||||+.+.|+.-+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998755
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.91 E-value=0.0049 Score=57.60 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+..+.+|.|+||.||||||+.+.|+--
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.90 E-value=0.0077 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+++|+|+.|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999998854
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.89 E-value=0.0066 Score=55.60 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999984
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.86 E-value=0.0066 Score=55.59 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+|.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.84 E-value=0.0064 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+.|.|+|+.||||||+.+.|+-.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.82 E-value=0.0068 Score=56.64 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++.++|..|||||||.+.|+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999984
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.0071 Score=56.20 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++.|+||.||||||+.+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.78 E-value=0.0058 Score=56.77 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
++.|+||.||||||+.+.|+--
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.78 E-value=0.0062 Score=62.19 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=27.6
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCc
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~ 551 (723)
+..+.-+.|.|+.||||||||+.|++.++|..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 44566689999999999999999999998754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.0039 Score=57.02 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.|+|+|+.++|||||+|.|+|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.0078 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+|.|+||.||||||..+.|+--
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.69 E-value=0.0074 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHhCC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.++|||+.|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999999753
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.68 E-value=0.0078 Score=55.46 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHH
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
+.-.++.++|+.||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999885
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.67 E-value=0.25 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.114 Sum_probs=20.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHh
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
..+++|+|.-|.|||||++.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.66 E-value=0.0078 Score=54.68 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999985
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.64 E-value=0.007 Score=56.20 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++||.|+.||||||+.+.|.-.
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.64 E-value=0.0069 Score=58.98 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHhCC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
..+.|.||.|||||||.+.|++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999753
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.61 E-value=0.0078 Score=54.63 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.+.|+|+.||||||+.+.|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999998654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.58 E-value=0.0085 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
-+|.++|+.|||||||.+.|+..+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.55 E-value=0.0089 Score=55.05 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999843
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.55 E-value=0.0088 Score=55.11 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+|.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998644
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.49 E-value=0.0083 Score=55.68 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.46 E-value=0.0073 Score=58.81 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
..+.|+||+|||||||.+.|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999999764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.0045 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.7
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
=.++|+|+.++|||||++.|.|.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999874
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.41 E-value=0.009 Score=58.76 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.|+|+|..|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999964
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.0099 Score=56.14 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHh
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
+|.+++|-|+-||||||+++.|.-
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999884
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.39 E-value=0.0096 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|..|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999974
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.38 E-value=0.007 Score=56.34 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.9
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
=+++|-|+.|||||||++.|+..
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.01 Score=55.95 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|.||.||||||+.+.|+-.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999843
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.37 E-value=0.01 Score=54.65 Aligned_cols=25 Identities=36% Similarity=0.284 Sum_probs=21.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
..-++|.++|+.||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998853
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.32 E-value=0.0074 Score=56.14 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.=+|+|-|+-|||||||++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.31 E-value=0.011 Score=56.06 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
+++|-||.||||||+.+.|+-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578889999999999999994
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.011 Score=55.76 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc---CCCCCcceEE
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG---DLSPTEGEVR 555 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G---l~~p~~G~I~ 555 (723)
+|+|.||.||||||+-+.|+. +..-+.|.++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHH
Confidence 899999999999999999974 4444455553
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.25 E-value=0.0035 Score=56.24 Aligned_cols=22 Identities=55% Similarity=0.748 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.|+|+|..|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.011 Score=54.32 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999983
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.22 E-value=0.012 Score=56.02 Aligned_cols=24 Identities=38% Similarity=0.355 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHH
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
.+|-++-|.|.+|||||||.+.|.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999999987
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.21 E-value=0.013 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++.++++|||+|+||||.+-=|+..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999986666643
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.19 E-value=0.012 Score=54.07 Aligned_cols=21 Identities=48% Similarity=0.515 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999984
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.18 E-value=0.011 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
|||+|...||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.15 E-value=0.011 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.012 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
++.|+||.||||||+.+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.012 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+|.+++|-|+-||||||+.+.|..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999999874
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.12 E-value=0.015 Score=54.89 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++||.|..||||||++++|.-.
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999743
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.087 Score=50.50 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=32.9
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLI 679 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~ 679 (723)
.+|+|+||.=. |...++..|...|.+.. ..+|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 45999999854 88899999999998864 3588999887654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.11 E-value=0.01 Score=55.66 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.013 Score=55.20 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+|.+|+|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.07 E-value=0.0043 Score=55.66 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|..|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.07 E-value=0.011 Score=57.96 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHhCC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
++|+|..|+|||||+|.|.|..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999999864
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.01 Score=59.96 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHhCC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
++||.|++|||||||.+.|..+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHH
Confidence 68999999999999999997543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.04 E-value=0.014 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|+.|+|||||++.|.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.04 E-value=0.013 Score=55.49 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc---CCCCCcceE
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG---DLSPTEGEV 554 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G---l~~p~~G~I 554 (723)
+|+|-||.||||||+.+.|+- +..-+.|.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 578999999999999999985 333344544
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.03 E-value=0.013 Score=56.02 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=27.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCHHHH
Q 048654 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHDRDFL 380 (723)
Q Consensus 338 ~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~--~TVIivsHdl~~l 380 (723)
.+.++|+||- ..+-......|..++.... ..+|++++..+.+
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhc
Confidence 5679999995 3444555666777776543 4667777776543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.011 Score=60.40 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.-+|||+||.|||||||++.|...+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 5589999999999999999998544
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.01 E-value=0.014 Score=53.65 Aligned_cols=23 Identities=52% Similarity=0.718 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.014 Score=54.71 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.96 E-value=0.015 Score=56.10 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.|.||+|+||||++++|+..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999964
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.0086 Score=57.33 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++.+++|-|+-||||||+++.|+..
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999864
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.014 Score=55.39 Aligned_cols=28 Identities=32% Similarity=0.378 Sum_probs=24.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
++|-+|+|-|+-||||||+.+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999877543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.93 E-value=0.013 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3889999999999999998763
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.91 E-value=0.014 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
=++.|+||.||||||+.+.|+--
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.015 Score=53.52 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++.|+||-||||||+.+.|+-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.88 E-value=0.015 Score=53.48 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
++.|+||.||||||+.+.|+--
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999864
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.86 E-value=0.017 Score=58.82 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
..|.-+.|+|+.||||||||+.|.+...
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 4455689999999999999999998653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.83 E-value=0.015 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+|.+++|-|+-||||||+++.|+-.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~ 26 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKK 26 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999999999854
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.81 E-value=0.015 Score=54.14 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++.|+||.||||||+.+.|+-
T Consensus 8 rIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999984
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.016 Score=55.08 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=23.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHH
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
|++|.++.|.|+.|||||||+--++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8899999999999999999998776
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.78 E-value=0.017 Score=54.96 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=21.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.+.+++++||+|+||||.+==|+-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999766666544
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.016 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3789999999999999998763
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.74 E-value=0.015 Score=54.86 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+|||+|+.||||||+.++|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.72 E-value=0.015 Score=55.56 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=27.9
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLI 679 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~ 679 (723)
++.++|+||- ..+-......|...+.... ..+|++++....+
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhc
Confidence 5678999984 3455566677777777664 3567777666543
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.71 E-value=0.016 Score=55.04 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
++|-+|-|.|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.01 Score=56.68 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=24.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
++.+|+|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.015 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.61 E-value=0.014 Score=52.94 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.++|+|+.|+|||||++.|.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.60 E-value=0.016 Score=52.48 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 048654 526 VAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~G 545 (723)
++|+|+.|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999998865
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.56 E-value=0.018 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++||.|..||||||.+++|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999999855
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.017 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.++|+|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999987653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.55 E-value=0.019 Score=52.03 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.0
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|||..|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 889999999999999988753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.019 Score=51.87 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.034 Score=50.18 Aligned_cols=21 Identities=43% Similarity=0.680 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.++|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.42 E-value=0.018 Score=54.87 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEECCCCccHHHHHHHHHh
Q 048654 194 YGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G 213 (723)
+.|.||+|+|||||+++|+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 78999999999999999985
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.38 E-value=0.021 Score=54.38 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=26.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
+|.+|+|-|+-||||||++++|.-.+.. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 6899999999999999999999877653 3443
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.021 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999988753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.34 E-value=0.02 Score=55.23 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHh
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+.++.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 457899999999999999998874
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.33 E-value=0.019 Score=54.99 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.|.||.|+|||||.++|+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhc
Confidence 4789999999999999999854
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.33 E-value=0.02 Score=55.23 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999998653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.31 E-value=0.018 Score=52.91 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+||||.-.+|||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999964
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.29 E-value=0.019 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=20.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
...++.++||||+||||.+-=|+..
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999988777743
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.016 Score=59.01 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.-++||.|+.|||||||+..|...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHH
Confidence 557999999999999999999754
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.22 E-value=0.025 Score=53.24 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.2
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHH
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
|++|+++.|.|++|+|||||+.-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999985443
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.22 E-value=0.021 Score=51.43 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.21 E-value=0.016 Score=55.39 Aligned_cols=25 Identities=36% Similarity=0.238 Sum_probs=19.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+..++++|||||+||||.+-=|+-
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999997666653
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.20 E-value=0.28 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
..+++|+|.-|.|||||.+.++.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.023 Score=52.15 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl 546 (723)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 889999999999999998864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.023 Score=53.81 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
-|.+|.++.|.||.|||||||...++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999999987775
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.16 E-value=0.016 Score=55.45 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=20.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.+..+++++||||+||||.+=-|+-.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999976555543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.16 E-value=0.02 Score=51.55 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++++|.+|+|||||++.+++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.11 E-value=0.025 Score=50.89 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.1
Q ss_pred EEEECCCCccHHHHHHHHHh
Q 048654 194 YGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G 213 (723)
++|||+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.08 E-value=0.021 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999998753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.06 E-value=0.019 Score=52.13 Aligned_cols=22 Identities=50% Similarity=0.584 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||+.|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.023 Score=53.71 Aligned_cols=22 Identities=45% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+|||+|..||||||..++|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999998643
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.02 E-value=0.023 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
..++.++||||+||||.+--|+-.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999877776544
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.02 E-value=0.027 Score=53.34 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=23.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHH
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
|++|+++.|.|+.|+|||||+--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999988876
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.02 E-value=0.021 Score=57.52 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++..+.++||.|||||+|.++|+..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhc
Confidence 3345679999999999999999964
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.02 E-value=0.017 Score=55.04 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
-.+++++||||+||||.+-=|+-.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999997766664443
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.00 E-value=0.027 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHH
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
+++|+++.|.||.|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999987654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.024 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++|+|+.|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999987754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.024 Score=51.37 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.86 E-value=0.024 Score=54.24 Aligned_cols=25 Identities=40% Similarity=0.767 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
+.|.||.|+|||||.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6799999999999999999766544
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.024 Score=51.12 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.|+|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.85 E-value=0.024 Score=54.26 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.|.||.|+|||||+++|++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999964
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.025 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=23.5
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHH
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
|++|.++.|.|++|||||||.-.++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999988776
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.82 E-value=0.024 Score=54.28 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+|||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.79 E-value=0.026 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+++||.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.025 Score=57.07 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
+|||.|+.|||||||.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 689999999999999999988764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.029 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.8
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|||+.|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999988754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.78 E-value=0.02 Score=54.54 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=19.0
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++++|||+|+||||.+-=|+-.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999977666643
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.78 E-value=0.03 Score=58.51 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
|+|+|..|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999954
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.76 E-value=0.053 Score=50.00 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=26.6
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
..|+..-+.+ .|.-+.|.|++|+|||||.-.|.
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 3456555666 68899999999999999997776
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.027 Score=50.72 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|+.|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999998753
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.73 E-value=0.027 Score=51.69 Aligned_cols=21 Identities=38% Similarity=0.744 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998774
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.03 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++.+.+-
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.031 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998854
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.68 E-value=0.057 Score=49.77 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=26.0
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
..|+..-+. -.|.-+.|+|++|+|||||.-.|...
T Consensus 3 ~~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 3 RSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ceEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 345544444 45788999999999999998877643
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.03 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|+|+.|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999853
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.63 E-value=0.031 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.028 Score=50.85 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.++|||..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.62 E-value=0.014 Score=58.29 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.4
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++||.|++||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 899999999999999998864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.027 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++|+|+.|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999988763
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.60 E-value=0.03 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
+++|-|.-||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.59 E-value=0.033 Score=58.20 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHhCC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
++|+|..|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.58 E-value=0.03 Score=53.87 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.+.++.|.||.|+|||||++.++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4678999999999999999988653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.55 E-value=0.03 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.++|+|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.53 E-value=0.036 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.7
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHH
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLL 543 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L 543 (723)
|.+|+++.|.|++|+|||||.--+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.53 E-value=0.026 Score=54.01 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
+.+.||.|+|||||.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999997543
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.028 Score=50.37 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+|+|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.49 E-value=0.031 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.48 E-value=0.034 Score=50.42 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.5
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.++|.+++|.|+=|||||||.|.|+.-+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46899999999999999999999986553
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.034 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.47 E-value=0.019 Score=52.53 Aligned_cols=22 Identities=45% Similarity=0.671 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.++|+|+.|+|||||++.|.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.46 E-value=0.036 Score=50.23 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=24.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
...+|.+++|.|+=|||||||.|.|+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 346899999999999999999999874
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.041 Score=49.94 Aligned_cols=24 Identities=50% Similarity=0.808 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.+.|+|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 478999999999999999987543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.034 Score=54.47 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=20.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
..-+.|.||.|||||+|++.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 345889999999999999999954
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.031 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999998863
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.42 E-value=0.038 Score=52.68 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.2
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
|.+|.++.|.|++|||||||+.-|+-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999876653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.032 Score=49.99 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.41 E-value=0.033 Score=51.91 Aligned_cols=23 Identities=48% Similarity=0.746 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.035 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|..|+|||||++.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 3789999999999999999865
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.37 E-value=0.032 Score=56.68 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.-++||.||.|||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.032 Score=50.21 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++|+|..|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999887653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.033 Score=50.21 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.34 E-value=0.036 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++-+..-
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.033 Score=50.55 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 048654 526 VAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~G 545 (723)
++|+|+.|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.037 Score=49.75 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=18.8
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|||..|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.26 E-value=0.041 Score=49.85 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.9
Q ss_pred EEEECCCCccHHHHHHHHHh
Q 048654 194 YGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G 213 (723)
++|||+.|+|||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.051 Score=49.23 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHhCC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.+.|||..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 37899999999999999998653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.032 Score=50.75 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.+.|+|..|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999887753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.17 E-value=0.037 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++||+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999863
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.15 E-value=0.026 Score=56.19 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=27.7
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
|.=+.|-+|++.+|+|+.|+|||||+..|+.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4447899999999999999999999999984
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.14 E-value=0.031 Score=53.17 Aligned_cols=24 Identities=38% Similarity=0.349 Sum_probs=15.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHh
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
...++++|||+|+||||.+-=|+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999998666663
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.13 E-value=0.036 Score=49.59 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 048654 526 VAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~G 545 (723)
++|+|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.08 E-value=0.035 Score=52.62 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=28.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCHHHH
Q 048654 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHDRDFL 380 (723)
Q Consensus 339 P~lLLLDEPT~~LD~~~~~~L~~~L~~~~--~TVIivsHdl~~l 380 (723)
..++|+||.- ++.......|...+.... ..+++++++.+-+
T Consensus 102 ~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 102 HKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 5799999965 455566666767676543 4677888877543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.036 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.|||.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.07 E-value=0.037 Score=54.12 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=25.8
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
|+++..=+.+|+++.|.|++|+|||||+.-|+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 44433337899999999999999999987776
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.036 Score=50.47 Aligned_cols=22 Identities=41% Similarity=0.744 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+++|+|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999988763
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.04 Score=49.54 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|..|+|||||++.+.+-
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.05 E-value=0.041 Score=51.93 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=23.0
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
+.+|+++.|.|+.|+|||||.--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999987765
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.04 E-value=0.041 Score=49.21 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.8
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|||..|+|||||++.+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.02 E-value=0.023 Score=52.02 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.++|+|+.|+|||||++.|.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.98 E-value=0.042 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
-+.+|+++.|.||.|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999999999876553
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.96 E-value=0.02 Score=57.10 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
+|||.|++||||||+.+.|..++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999876554
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.95 E-value=0.035 Score=55.89 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.-+.++||.|||||+|.++|+..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 345799999999999999999864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.94 E-value=0.043 Score=53.70 Aligned_cols=25 Identities=40% Similarity=0.691 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
..-+.|.||.|||||+|.+.|+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3457899999999999999999754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=0.043 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|+|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.87 E-value=0.036 Score=51.37 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 048654 526 VAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~G 545 (723)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998775
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.81 E-value=0.035 Score=52.81 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=16.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
...+++++||+|+||||.+==|+-.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999766665433
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.039 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.|+|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.041 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
-|.+|.++.|.|++|||||||.-.++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999999987776
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.75 E-value=0.028 Score=50.94 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.+.|+|+.|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999976443
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.75 E-value=0.041 Score=49.56 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997664
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.039 Score=49.93 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 048654 526 VAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~G 545 (723)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.72 E-value=0.04 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
-+.|.||.|||||+|++.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4789999999999999999954
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.69 E-value=0.042 Score=52.23 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHH-HcCCCCCcceE
Q 048654 525 RVAIVGPNGAGKSTLLNLL-AGDLSPTEGEV 554 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L-~Gl~~p~~G~I 554 (723)
.+.|+|++|+|||||++-+ .+...|+-|-.
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG~~ 38 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGIF 38 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCCeE
Confidence 5789999999999999876 45666887743
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.67 E-value=0.035 Score=53.23 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=31.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCHH
Q 048654 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHDRD 378 (723)
Q Consensus 338 ~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~--~TVIivsHdl~ 378 (723)
+..++|+||.-. |.......+...+.... ..+|++|++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeecccc
Confidence 456999999854 88888888888887763 35788998875
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.62 E-value=0.05 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=21.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHhCC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
...+.|.||.|+||||+++.|+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998643
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.60 E-value=0.045 Score=54.46 Aligned_cols=33 Identities=39% Similarity=0.532 Sum_probs=28.0
Q ss_pred ceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 515 ~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
|.=+.|-+|++.+|+|+.|+|||||+..|+.-.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 334578899999999999999999999998643
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.56 E-value=0.045 Score=54.44 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=18.2
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 048654 193 RYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~ 212 (723)
++||-|+.|||||||.+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 78999999999999998774
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.54 E-value=0.048 Score=53.30 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=26.4
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
|+.+..-+.+|+++.|.|+.|+|||||+.-|+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45444457899999999999999999987775
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.046 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999987753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.52 E-value=0.045 Score=50.69 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|+|+.|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999988754
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.49 E-value=0.04 Score=53.55 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
-+.|.||.|||||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3689999999999999999874
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.44 E-value=0.045 Score=51.86 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLI 679 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~ 679 (723)
..++|+||.- ++....+..|...+.+.. ..+++++++..-+
T Consensus 102 ~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 102 HKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 5799999854 566677788888887765 3577888877654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.43 E-value=0.052 Score=48.84 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.41 E-value=0.038 Score=52.97 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=33.0
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHcCc--eEEEEecCHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEFTG--GVVLVSHDSRLI 679 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~--tVIivSHD~~~~ 679 (723)
...++|+||.- .|.......+...+.+... .+|++|++.+.+
T Consensus 131 ~~~iiiide~d-~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEAN-SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTT-SSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEecccc-ccccccchhhhcccccccccccceeeeccccch
Confidence 45699999985 4888888889999988753 478899887633
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.048 Score=49.32 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.9
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|+|..|+|||||++.+.+-
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 889999999999999988753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.40 E-value=0.046 Score=51.74 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=29.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC-c-EEEEEeCCHHH
Q 048654 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRWK-K-TLVVVSHDRDF 379 (723)
Q Consensus 339 P~lLLLDEPT~~LD~~~~~~L~~~L~~~~-~-TVIivsHdl~~ 379 (723)
..++|+||. ..+.......|...|.... . .+++++++...
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 469999996 4677888888888888763 3 45666666543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.39 E-value=0.049 Score=49.15 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.++|+|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.37 E-value=0.042 Score=54.00 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+....-+.|.||.|+|||+|++.|++.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHH
Confidence 334455889999999999999999975
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.05 Score=49.06 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.++|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.056 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||+.|+|||||++-+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.22 E-value=0.034 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.|+|++|+|||||++.+.+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999743
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.052 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+|||-|+.|||||||...|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.056 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999888753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.19 E-value=0.043 Score=50.03 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
.+.|+|..|+|||||++-+....-|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 478999999999999999877667777754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.051 Score=49.71 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.++|+|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.058 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998853
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.033 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.++|+|+.|+|||||++.+++
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.03 E-value=0.058 Score=51.70 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
..+.|.||.|+||||+++.|+..+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 47889999999999999999987754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.02 E-value=0.051 Score=51.36 Aligned_cols=41 Identities=15% Similarity=0.368 Sum_probs=30.6
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHcC-c-eEEEEecCHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEFT-G-GVVLVSHDSRLI 679 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-~-tVIivSHD~~~~ 679 (723)
.+++|+||- ..+.......|...|.+.. . -++++|++...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 469999996 5678888899999998875 3 366777665543
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.89 E-value=0.063 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.|+|..|+|||||++.+.+-
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999988753
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.048 Score=54.06 Aligned_cols=24 Identities=54% Similarity=0.607 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
-+|+|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.85 E-value=0.056 Score=52.56 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=19.4
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.|.||.|+|||||++.|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 579999999999999999964
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.84 E-value=0.058 Score=48.59 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.70 E-value=0.06 Score=54.51 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.-++||.|+-|+|||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.69 E-value=0.062 Score=48.51 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.+.|+|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.062 Score=48.26 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.++|+|..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987643
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.62 E-value=0.056 Score=54.22 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHccCCCeEEe--ccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHH
Q 048654 618 AKLSGGQKARVVFTSISMSKPHILLL--DEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLIS 680 (723)
Q Consensus 618 ~~LSGGqkqRv~lAral~~~p~lLlL--DEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~ 680 (723)
..++.-+..++....-+...|-++++ +|.. .......+.......+..|+.++...+...
T Consensus 196 ~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~---~~e~~~~~~~~~~~~~~~vi~~sa~~E~~L 257 (319)
T d1wxqa1 196 TKWSQDDLLAFASEIRRVNKPMVIAANKADAA---SDEQIKRLVREEEKRGYIVIPTSAAAELTL 257 (319)
T ss_dssp GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---CHHHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred hhcCHHHHHHhHHHhhhhcCchhhhcccccch---hhHHHHHHHHHHhhcCCEEEEecHHHHHHH
Confidence 35777788887777777778877774 3332 233344444444444567777777766543
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.07 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|||..|+|||||++-+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.58 E-value=0.032 Score=56.51 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
--+.|+||.|+|||||++.|+++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 34789999999999999999999986
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.57 E-value=0.063 Score=48.38 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.57 E-value=0.041 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.|+|+|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999987765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.072 Score=47.95 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=18.2
Q ss_pred EEEECCCCccHHHHHHHHHh
Q 048654 194 YGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G 213 (723)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997754
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.50 E-value=0.067 Score=49.11 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=18.2
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 048654 193 RYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~ 212 (723)
.+.|||..|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999985
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.066 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.++|+|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999977653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.42 E-value=0.059 Score=52.36 Aligned_cols=22 Identities=45% Similarity=0.812 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+.|.||.|+|||+|.+.|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5799999999999999999754
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.39 E-value=0.075 Score=47.87 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.38 E-value=0.057 Score=52.97 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=23.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
....-+.|.||.|+|||+|++.|++.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3444588999999999999999998763
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.074 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|..|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999987754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.041 Score=49.81 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=18.1
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.++|+|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.30 E-value=0.069 Score=48.99 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc--CCCCCcce
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG--DLSPTEGE 553 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G--l~~p~~G~ 553 (723)
.+.|+|..|+|||||++-+.- ...||-|-
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeeee
Confidence 578999999999999998842 24578784
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.25 E-value=0.067 Score=52.17 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.|.||.|+|||+|+++|+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHHH
Confidence 789999999999999999964
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.072 Score=48.83 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999988764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.22 E-value=0.046 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=9.0
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.++|||..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999987764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.15 E-value=0.073 Score=50.51 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=18.1
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 048654 193 RYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~ 212 (723)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999875
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.097 Score=51.33 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=24.0
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
=|+.|.++-|.||+|||||||+-.++.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHH
Confidence 478999999999999999999877763
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.073 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.++|||..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 389999999999999988764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.98 E-value=0.079 Score=50.54 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+|||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999954
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.88 E-value=0.069 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+.|.||.|+|||+|++.|+...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7799999999999999999854
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.87 E-value=0.09 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
+||+|.-.+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.83 E-value=0.079 Score=48.34 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.2
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.++|||..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987664
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.80 E-value=0.082 Score=50.42 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=19.5
Q ss_pred cEEEEECCCCccHHHHHHHHH
Q 048654 192 KRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~ 212 (723)
.++||.|+-||||||+.+.|.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999996
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.72 E-value=0.083 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.+.|+|..|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999976644
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.64 E-value=0.053 Score=52.31 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=18.4
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
++.|.||.|+||||+++.++.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 366779999999999999984
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.57 E-value=0.063 Score=56.78 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
=+.+|||.|||||-|.+.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.54 E-value=0.15 Score=46.89 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=24.3
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
++..-+.+ .|.=+.|.|++|+|||||.-.|.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 44444555 67889999999999999987765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.50 E-value=0.076 Score=55.36 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=23.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
++-.+.|.||.||||||+|..+...+.
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 455799999999999999999987654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.46 E-value=0.082 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
.|+|+|..|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999977654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.43 E-value=0.14 Score=46.62 Aligned_cols=33 Identities=24% Similarity=0.164 Sum_probs=24.6
Q ss_pred eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 180 vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
.|+. ++-.-.|.-+.|.|++|+|||||.-.|..
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3444 33345588999999999999999866653
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.34 E-value=0.091 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|..|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999887653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.33 E-value=0.058 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45677999999999999998765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.24 E-value=0.078 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
-+++|+||-++||||||+.|.|.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHcCC
Confidence 38999999999999999999975
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.21 E-value=0.088 Score=50.06 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.7
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+++|=|+-||||||+++.|.-.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999853
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.92 E-value=0.1 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS-PT 550 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~-p~ 550 (723)
.++|+|.-.||||||++.|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999999999999999753 44
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.85 E-value=0.11 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
=.+||||...+|||||++.|++--
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 359999999999999999999763
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.81 E-value=0.094 Score=55.36 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.4
Q ss_pred cEEEEECCCCccHHHHHHHHHhCC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.-+.+|||+|||||-|++.|++..
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.73 E-value=0.14 Score=46.31 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHhCCCC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
.+.|||..|+|||||++-+.....|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~ 28 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEA 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCC
Confidence 4789999999999999988643333
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.22 E-value=0.12 Score=51.00 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
|.=+.|-+|++.+|+|+.|+|||||+..|+
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 445789999999999999999999988775
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.18 E-value=0.11 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.++|+|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999965
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.17 E-value=0.12 Score=47.65 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEECCCCccHHHHHHHHHhC
Q 048654 194 YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+||+|.-.+|||||++.|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999975
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.17 E-value=0.12 Score=53.63 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=33.3
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCH
Q 048654 328 RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDR 377 (723)
Q Consensus 328 RvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl 377 (723)
--+|..+|=++||+|++.|.. |+.+.....+.- ..|..|+.+-|=-
T Consensus 217 ~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 217 ARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-LTGHLVMSTLHTN 262 (401)
T ss_dssp HHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCS
T ss_pred HHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH-hcCCeEEEEeccC
Confidence 456788889999999999987 666666655533 3466777777743
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.12 Score=49.05 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.+|+|=|+=||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4799999999999999999987554
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.10 E-value=0.1 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+||||..-+|||||++.|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.01 E-value=0.12 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+||||..-+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999975
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.99 E-value=0.13 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.++||+|+|||.|.+.|+..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhh
Confidence 4789999999999999999964
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.81 E-value=0.17 Score=49.52 Aligned_cols=29 Identities=38% Similarity=0.596 Sum_probs=24.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
-|..|.++-|.||+|||||||+-.++...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999976665543
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.78 E-value=0.16 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.6
Q ss_pred EEEEECCCCccHHHHHHHHHhCCC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
.++|||.-.||||||++.|.|.-.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999753
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.73 E-value=0.15 Score=50.20 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc-CcEEEEEeC
Q 048654 322 SGGWRMRISLARALFVQPT--LLLLDEPTNHLDLRAVLWLEEYLCRW-KKTLVVVSH 375 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~--lLLLDEPT~~LD~~~~~~L~~~L~~~-~~TVIivsH 375 (723)
.....+--++++..+.+|+ +|++...+..+-......+.+.+... ..+++++|+
T Consensus 145 ~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk 201 (299)
T d2akab1 145 PDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITK 201 (299)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred hhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEec
Confidence 3344445588888888887 34455444444444444555555544 468888887
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.43 E-value=0.15 Score=50.03 Aligned_cols=24 Identities=46% Similarity=0.628 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+=.+||||-.-+|||||++.|++.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999965
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.28 E-value=0.14 Score=52.58 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=25.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++.+.++.+.||.|+|||||.+.|++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHH
Confidence 3478889999999999999999999975
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.16 E-value=0.26 Score=45.08 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=20.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
-.|.=+.|.|++|+|||||.-.|.
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 357789999999999999887665
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.89 E-value=0.16 Score=49.77 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=29.0
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~ 230 (723)
=|+.|.++-|.||+|+|||||+-.++... ....+.+.|++.+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~--q~~g~~~vyIDtE 97 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAE 97 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHH--HHTTCEEEEEESS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHH--hcCCCEEEEEECC
Confidence 47899999999999999999976655321 1122345565544
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=86.85 E-value=0.075 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.230 Sum_probs=22.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHhCC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
|..+.|+|+-|+|||||++.|++++
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCeEEEECCCCccHHHHHHHHHHhC
Confidence 3468999999999999999999865
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.74 E-value=0.16 Score=46.07 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.6
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+.|+|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.56 E-value=0.17 Score=45.92 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC---CCCCcc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD---LSPTEG 552 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl---~~p~~G 552 (723)
.+.|+|..|+|||||++-+... ..|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 4789999999999999988543 345555
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.25 E-value=0.19 Score=49.34 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+||||-.-+|||||++.|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999975
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.13 E-value=0.23 Score=48.81 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=26.4
Q ss_pred ceEEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 515 ~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
|.=+.+-+|++++|+|+.|+|||||+..|+-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 3446789999999999999999999777754
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.96 E-value=0.15 Score=48.54 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
++.|.|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999988764
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.91 E-value=0.19 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.+.++||.|+|||.|.+.|+..+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 37899999999999999999865
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.72 E-value=0.23 Score=46.19 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
-+||+|.=.+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.51 E-value=0.15 Score=50.05 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=23.8
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
-|..|.++-|.||+|+|||||+-.++..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 4689999999999999999997666543
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=85.51 E-value=0.32 Score=44.17 Aligned_cols=25 Identities=36% Similarity=0.325 Sum_probs=20.4
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
.-.|.=+.|.|++|+|||||.-.|.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3458889999999999999885554
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.38 E-value=0.19 Score=51.51 Aligned_cols=29 Identities=28% Similarity=0.219 Sum_probs=25.7
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
+.++..+.+.||.|+|||||.+.|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46778999999999999999999998764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.37 E-value=0.21 Score=47.67 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=32.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHH
Q 048654 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFL 380 (723)
Q Consensus 339 P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l 380 (723)
.+|+|+||.=. |...+...|...|.+. ...+|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 45999999964 8888888899988875 34788999887543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.23 E-value=0.2 Score=46.89 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 048654 526 VAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~G 545 (723)
++|+|.-++|||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999963
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.22 E-value=0.31 Score=48.86 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=25.3
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.-+-...+.| ++.|+||.|+|||.|.+.|++.
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 34344566666 5666899999999999999964
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=85.20 E-value=0.19 Score=49.17 Aligned_cols=20 Identities=45% Similarity=0.606 Sum_probs=18.4
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 048654 193 RYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~ 212 (723)
-++|+|..|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999985
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.12 E-value=0.17 Score=49.67 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=25.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
-|+.|.++-|.||+|||||||.-.++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 478999999999999999999988876543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.94 E-value=0.23 Score=46.50 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=30.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHH
Q 048654 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDF 379 (723)
Q Consensus 339 P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~ 379 (723)
.+|+|+||. -.|...+...|...|.+. +..+|++|++++-
T Consensus 109 ~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 109 AKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp CEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred cceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhh
Confidence 679999975 456678888899988875 3456888999763
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.80 E-value=0.24 Score=46.33 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=18.4
Q ss_pred EEEECCCCccHHHHHHHHHh
Q 048654 194 YGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G 213 (723)
+||+|.-++|||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999963
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=84.25 E-value=0.23 Score=48.62 Aligned_cols=20 Identities=50% Similarity=0.728 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 048654 525 RVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~ 544 (723)
-++|+|+-|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999884
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.20 E-value=0.2 Score=51.91 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=18.6
Q ss_pred CcEEEEECCCCccHHHHHHHHH
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
-.++.|+|++||||||+++.|.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHH
Confidence 3579999999999999987554
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.10 E-value=0.2 Score=47.57 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++.|.|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999998753
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.83 E-value=0.27 Score=46.30 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.2
Q ss_pred EEEECCCCccHHHHHHHHHh
Q 048654 194 YGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G 213 (723)
+.|.||.|+|||-|+++++-
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57999999999999999973
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.81 E-value=0.27 Score=45.91 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=31.0
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLI 679 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~ 679 (723)
.+|+|+||. -.|-..+...|...|.+.. .-+|++|++..-+
T Consensus 109 ~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 109 AKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp CEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred cceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence 679999975 4455778888888888864 3478889998743
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.66 E-value=0.25 Score=48.64 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.4
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 048654 193 RYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~ 212 (723)
-+||+|..|||||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999985
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.26 E-value=0.27 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHH---HcCCC
Q 048654 526 VAIVGPNGAGKSTLLNLL---AGDLS 548 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L---~Gl~~ 548 (723)
++|+|..|||||||+..| +|...
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 799999999999999988 45544
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.15 E-value=0.29 Score=46.04 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+.|.||.|+|||-|+++++-.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 579999999999999999754
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.04 E-value=0.3 Score=47.99 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=26.0
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
|.=+.|-+|++++|+|+.|+|||||+..+.
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHH
Confidence 344788999999999999999999997654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.84 E-value=0.31 Score=45.20 Aligned_cols=22 Identities=32% Similarity=0.461 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+||+|.=.+|||||++.|+|.
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~ 31 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGI 31 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEEEccCCcHHHHHHHHHhh
Confidence 4899999999999999999975
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=82.19 E-value=0.49 Score=47.65 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcce
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~ 553 (723)
+|.|=|+=|+||||+++.|...+....+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v 36 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPT 36 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCe
Confidence 57899999999999999999877654333
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.25 E-value=0.4 Score=44.56 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
-+.|||+.|.|||+++.-|+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHH
Confidence 367999999999999999984
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.69 E-value=0.41 Score=46.79 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHh
Q 048654 193 RYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G 213 (723)
-+.|||+.|+|||+|+.-|+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHH
Confidence 568999999999999999984
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.58 E-value=0.39 Score=44.52 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl 546 (723)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999864
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.41 E-value=0.34 Score=47.53 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.9
Q ss_pred ceEEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 515 ~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
|.=+.|-+|++++|+|+.|+|||+|+..+.-
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHHh
Confidence 3445789999999999999999999876543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=80.14 E-value=0.42 Score=48.82 Aligned_cols=22 Identities=36% Similarity=0.771 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 048654 526 VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 526 vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+.++||.|+|||-|.|.|+.++
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 5688999999999999999875
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.12 E-value=0.25 Score=48.72 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=25.9
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
|.=+.|-+|++++|+|+.|+|||||+.-++
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 445789999999999999999999987554
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=80.08 E-value=0.39 Score=49.54 Aligned_cols=45 Identities=16% Similarity=0.057 Sum_probs=33.6
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHh
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRV 682 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~ 682 (723)
|-++++||--+-........+....+.++..+++++.++..+...
T Consensus 277 ~v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~~ 321 (433)
T d1e9ra_ 277 RLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDDV 321 (433)
T ss_dssp CEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHHH
T ss_pred ceEEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHHH
Confidence 336888998776665566666666677778999999998877543
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=80.03 E-value=0.44 Score=48.00 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTE 551 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~ 551 (723)
+|.|=|+=||||||+++.|.-.+....
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g 33 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITP 33 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 588999999999999999998776543
|