Citrus Sinensis ID: 048657

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MSTRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEcccHHHHccccccEEEccccEEEEEcccccccccccccEEEccccEEEEEcccccccccccccEEEEEccEEEEEcccccccccccccccEEEccccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEcccccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHccccccccccccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHccccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHHHHHccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccEEEEEcccccccccccHHHHcccccccEEEccccccccccccc
Coil and Loop (DISEMBL)
MSTRIALNTSFLQIIGesmpslkylslsdsnssrildrGLCSLVHLQelyidnndlrgslpwclanmtslrildvssnqltgsisssplvhLTSIEELMlsnnhfqipislepffnhsrlkffyaennqinaeitqshslippkfqlsrlslssgyedgvtfpkflyhqhdleyvdlshikmngefptwllenNTKLIQLSVVndslagpfrlpihshkqlRLLDistnnfrghipveigdvlpslyvfnnsmnaldgsipssfgnmkFLQILDlsnnhltgeipehlavGCVNLESLAlsnnnleghmfsrnfNLANLKLLQlegnrfvgeipqslskcssleglhlnnnslsgriprwlgnLTWLQYIImpnnhleglipvefcqldslqildisdnnisgslpacfhplsikqvHLSKnmlhgqlkrgtffncsslvtldlsynrlngsipdw
Flexible Loop (DISEMBL)
mstrialnTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVtldlsynrlngsipdw
Low Complexity Region (SEG)
MSTRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVnleslalsnnnleGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW
Disordered region (IsUnstruct)
*****ALNTSFLQIIGESMPSLKYLSL*****SRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL*******
Disordered Region (DISOPRED)
MSTRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW
Disordered Region (DISEMBL)
MSTRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW
Disordered Region (DISPRO)
****IALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP*W
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q9LHP4	1141	Receptor-like protein kin	no	no	0.820	0.327	0.335	3e-43
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.888	0.324	0.343	5e-42
Q9FL28	1173	LRR receptor-like serine/	no	no	0.881	0.342	0.325	2e-40
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.866	0.363	0.325	3e-40
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.842	0.338	0.318	7e-40
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.940	0.342	0.304	1e-39
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.822	0.370	0.331	5e-37
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.846	0.393	0.329	6e-37
C0LGV1	1135	LRR receptor-like serine/	no	no	0.901	0.362	0.292	6e-37
Q42371	976	LRR receptor-like serine/	no	no	0.868	0.405	0.302	1e-36

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  176 bits (447), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 229/429 (53%), Gaps = 55/429 (12%)

Query: 38  RGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 97
           R +  L  L++L++  N L G +P  + N ++L+++D+S N L+GSI SS +  L+ +EE
Sbjct: 292 REIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSS-IGRLSFLEE 350

Query: 98  LMLSNNHFQ--IPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKF-QLSRLSLSS 154
            M+S+N F   IP ++    N S L     + NQI+        LIP +   L++L+L  
Sbjct: 351 FMISDNKFSGSIPTTIS---NCSSLVQLQLDKNQISG-------LIPSELGTLTKLTLFF 400

Query: 155 GYEDGV--TFPKFLYHQHDLEYVDLSHIKMNGEFPT--WLLENNTKLIQLSVVNDSLAGP 210
            + + +  + P  L    DL+ +DLS   + G  P+  ++L N TKL+ +S         
Sbjct: 401 AWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLIS--------- 451

Query: 211 FRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL 270
                             N+  G IP EIG+   SL       N + G IPS  G++K +
Sbjct: 452 ------------------NSLSGFIPQEIGNC-SSLVRLRLGFNRITGEIPSGIGSLKKI 492

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFV 330
             LD S+N L G++P+ +   C  L+ + LSNN+LEG + +   +L+ L++L +  N+F 
Sbjct: 493 NFLDFSSNRLHGKVPDEIG-SCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFS 551

Query: 331 GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDS 390
           G+IP SL +  SL  L L+ N  SG IP  LG  + LQ + + +N L G IP E   +++
Sbjct: 552 GKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIEN 611

Query: 391 LQI-LDISDNNISGSLP---ACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 446
           L+I L++S N ++G +P   A  + LSI  + LS NML G L      N  +LV+L++SY
Sbjct: 612 LEIALNLSSNRLTGKIPSKIASLNKLSI--LDLSHNMLEGDL--APLANIENLVSLNISY 667

Query: 447 NRLNGSIPD 455
           N  +G +PD
Sbjct: 668 NSFSGYLPD 676

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  172 bits (436), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 226/439 (51%), Gaps = 34/439 (7%)

Query: 40  LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
           L SLV+++ L I +N+L G +P  L N+ +L++L ++S +LTG I S  L  L  ++ L+
Sbjct: 139 LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLI 197

Query: 100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQIN----AEITQSHSL-------------IP 142
           L +N+ + PI  E   N S L  F A  N +N    AE+ +  +L             IP
Sbjct: 198 LQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP 256

Query: 143 PKF----QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPT--WLLENNTK 196
            +     QL  LSL +    G+  PK L    +L+ +DLS   + GE P   W   N ++
Sbjct: 257 SQLGEMSQLQYLSLMANQLQGL-IPKSLADLGNLQTLDLSANNLTGEIPEEFW---NMSQ 312

Query: 197 LIQLSVVNDSLAGPFRLPIHSH-KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
           L+ L + N+ L+G     I S+   L  L +S     G IPVE+     SL   + S N+
Sbjct: 313 LLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKC-QSLKQLDLSNNS 371

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFN 315
           L GSIP +   +  L  L L NN L G +   ++    NL+ L L +NNLEG +      
Sbjct: 372 LAGSIPEALFELVELTDLYLHNNTLEGTLSPSIS-NLTNLQWLVLYHNNLEGKLPKEISA 430

Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
           L  L++L L  NRF GEIPQ +  C+SL+ + +  N   G IP  +G L  L  + +  N
Sbjct: 431 LRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQN 490

Query: 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFF 434
            L G +P        L ILD++DN +SGS+P+ F  L  ++Q+ L  N L G L   +  
Sbjct: 491 ELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPD-SLI 549

Query: 435 NCSSLVTLDLSYNRLNGSI 453
           +  +L  ++LS+NRLNG+I
Sbjct: 550 SLRNLTRINLSHNRLNGTI 568

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 223/442 (50%), Gaps = 40/442 (9%)

Query: 40  LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
           L  LVHLQ      N L GS+P  +  + +L  LD+S NQLTG I      +L +++ L+
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG 159
           L+ N  +  I  E   N S L      +NQ+  +I      +    QL  L +   Y++ 
Sbjct: 247 LTENLLEGDIPAE-IGNCSSLVQLELYDNQLTGKIPAE---LGNLVQLQALRI---YKNK 299

Query: 160 VT--FPKFLYHQHDLEYVDLSHIKMNGEFPTWL--LENNTKLIQLSVVNDSLAGPFRLPI 215
           +T   P  L+    L ++ LS   + G     +  LE+   L  L++ +++  G F   I
Sbjct: 300 LTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQSI 356

Query: 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 275
            + + L +L +  NN  G +P ++G +L +L   +   N L G IPSS  N   L++LDL
Sbjct: 357 TNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDL 415

Query: 276 SNNHLTGEIPE--------HLAVG--------------CVNLESLALSNNNLEGHMFSRN 313
           S+N +TGEIP          +++G              C NLE+L++++NNL G +    
Sbjct: 416 SHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLI 475

Query: 314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP 373
             L  L++LQ+  N   G IP+ +     L  L+L++N  +GRIPR + NLT LQ + M 
Sbjct: 476 GKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMY 535

Query: 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGT 432
           +N LEG IP E   +  L +LD+S+N  SG +PA F  L S+  + L  N  +G +   +
Sbjct: 536 SNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIP-AS 594

Query: 433 FFNCSSLVTLDLSYNRLNGSIP 454
             + S L T D+S N L G+IP
Sbjct: 595 LKSLSLLNTFDISDNLLTGTIP 616

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 226/461 (49%), Gaps = 66/461 (14%)

Query: 46  LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
           ++ L +  + L G L   +  + SL  LD+S N  +G + S+ L + TS+E L LSNN F
Sbjct: 78  VETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPST-LGNCTSLEYLDLSNNDF 136

Query: 106 --QIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFP 163
             ++P   + F +   L F Y + N ++  I  S   +    +L  L +S     G T P
Sbjct: 137 SGEVP---DIFGSLQNLTFLYLDRNNLSGLIPAS---VGGLIELVDLRMSYNNLSG-TIP 189

Query: 164 KFLYHQHDLEYVDLSHIKMNGEFPT--WLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQL 221
           + L +   LEY+ L++ K+NG  P   +LLEN   L +L V N+SL G       + K+L
Sbjct: 190 ELLGNCSKLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSLGGRLHFGSSNCKKL 246

Query: 222 RLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 281
             LD+S N+F+G +P EIG+   SL+        L G+IPSS G ++ + ++DLS+N L+
Sbjct: 247 VSLDLSFNDFQGGVPPEIGNC-SSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLS 305

Query: 282 GEIPEHLAVGCVNLESLALSNNNLEGHM------------FSRNFN-------------- 315
           G IP+ L   C +LE+L L++N L+G +                FN              
Sbjct: 306 GNIPQELG-NCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQ 364

Query: 316 ----------------------LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSL 353
                                 L +LK L L  N F G+IP SL    SLE + L  N  
Sbjct: 365 SLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRF 424

Query: 354 SGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS 413
           +G IP  L +   L+  I+ +N L G IP    Q  +L+ + + DN +SG LP     LS
Sbjct: 425 TGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLS 484

Query: 414 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
           +  V+L  N   G + R +  +C +L+T+DLS N+L G IP
Sbjct: 485 LSYVNLGSNSFEGSIPR-SLGSCKNLLTIDLSQNKLTGLIP 524

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  165 bits (417), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 206/439 (46%), Gaps = 55/439 (12%)

Query: 40  LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
           L +L  LQ L++D N L+G+LP  ++N +SL  L  S N++ G I ++    L  +E L 
Sbjct: 206 LGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAA-YGALPKLEVLS 264

Query: 100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG 159
           LSNN+F   +    F N S                            + +L  ++ + D 
Sbjct: 265 LSNNNFSGTVPFSLFCNTS--------------------------LTIVQLGFNA-FSDI 297

Query: 160 VTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHK 219
           V        +  L+ +DL   +++G FP W L N   L  L V  +  +G     I + K
Sbjct: 298 VRPETTANCRTGLQVLDLQENRISGRFPLW-LTNILSLKNLDVSGNLFSGEIPPDIGNLK 356

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
           +L  L ++ N+  G IPVEI     SL V +   N+L G IP   G MK L++L L  N 
Sbjct: 357 RLEELKLANNSLTGEIPVEIKQC-GSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNS 415

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
            +G +P  + V    LE L L  NNL G        L +L  L L GNRF G +P S+S 
Sbjct: 416 FSGYVPSSM-VNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISN 474

Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
            S+L  L+L+ N  SG IP  +GNL  L  + +   ++ G +PVE   L ++Q++ +  N
Sbjct: 475 LSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGN 534

Query: 400 NISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFF-----------------------N 435
           N SG +P  F  L S++ V+LS N   G++ +   F                       N
Sbjct: 535 NFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGN 594

Query: 436 CSSLVTLDLSYNRLNGSIP 454
           CS+L  L+L  NRL G IP
Sbjct: 595 CSALEVLELRSNRLMGHIP 613

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 226/457 (49%), Gaps = 28/457 (6%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLAN 66
           LN +  +  G ++ +L+ L+L+    + ++      LV LQ L + +N+L G +P  + N
Sbjct: 156 LNGTIPETFG-NLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGN 214

Query: 67  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSRLKFFY 124
            TSL +   + N+L GS+ +  L  L +++ L L +N F  +IP  L    +   +++  
Sbjct: 215 CTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDNSFSGEIPSQLGDLVS---IQYLN 270

Query: 125 AENNQINAEITQSHSLIPPKFQ----LSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI 180
              NQ+         LIP +      L  L LSS    GV   +F +  + LE++ L+  
Sbjct: 271 LIGNQL-------QGLIPKRLTELANLQTLDLSSNNLTGVIHEEF-WRMNQLEFLVLAKN 322

Query: 181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIG 240
           +++G  P  +  NNT L QL +    L+G     I + + L+LLD+S N   G IP  + 
Sbjct: 323 RLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLF 382

Query: 241 DV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL 298
            +  L +LY+ NNS   L+G++ SS  N+  LQ   L +N+L G++P+ +      LE +
Sbjct: 383 QLVELTNLYLNNNS---LEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGF-LGKLEIM 438

Query: 299 ALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIP 358
            L  N   G M     N   L+ +   GNR  GEIP S+ +   L  LHL  N L G IP
Sbjct: 439 YLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIP 498

Query: 359 RWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS-IKQV 417
             LGN   +  I + +N L G IP  F  L +L++  I +N++ G+LP     L  + ++
Sbjct: 499 ASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRI 558

Query: 418 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
           + S N  +G +        SS ++ D++ N   G IP
Sbjct: 559 NFSSNKFNGSIS--PLCGSSSYLSFDVTENGFEGDIP 593

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 205/434 (47%), Gaps = 59/434 (13%)

Query: 22  LKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81
           L +L+ S +N S  L   L +LV L+ L +  N  +GSLP    N+  LR L +S N LT
Sbjct: 142 LVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLT 201

Query: 82  GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLI 141
           G + S  L  L S+E  +L  N F+ PI                                
Sbjct: 202 GELPSV-LGQLPSLETAILGYNEFKGPI-------------------------------- 228

Query: 142 PPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLS 201
           PP+F                      + + L+Y+DL+  K++GE P+ L +  + L  L 
Sbjct: 229 PPEFG---------------------NINSLKYLDLAIGKLSGEIPSELGKLKS-LETLL 266

Query: 202 VVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIP 261
           +  ++  G     I S   L++LD S N   G IP+EI   L +L + N   N L GSIP
Sbjct: 267 LYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEI-TKLKNLQLLNLMRNKLSGSIP 325

Query: 262 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL 321
            +  ++  LQ+L+L NN L+GE+P  L      L+ L +S+N+  G + S   N  NL  
Sbjct: 326 PAISSLAQLQVLELWNNTLSGELPSDLGKNSP-LQWLDVSSNSFSGEIPSTLCNKGNLTK 384

Query: 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI 381
           L L  N F G+IP +LS C SL  + + NN L+G IP   G L  LQ + +  N L G I
Sbjct: 385 LILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGI 444

Query: 382 PVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHL-SKNMLHGQLKRGTFFNCSSLV 440
           P +     SL  +D S N I  SLP+    +   Q  L + N + G++    F +C SL 
Sbjct: 445 PGDISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPD-QFQDCPSLS 503

Query: 441 TLDLSYNRLNGSIP 454
            LDLS N L G+IP
Sbjct: 504 NLDLSSNTLTGTIP 517

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 141/428 (32%), Positives = 218/428 (50%), Gaps = 42/428 (9%)

Query: 18  SMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           S  SL+Y+ LS+++ +  I     C L  L+ L + +N L G++P  L+N T+L+ +D+ 
Sbjct: 164 SSSSLQYIDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLE 223

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHF---QIPISLEPFF----NHSRLKFFYAENNQ 129
           SN L+G + S  +  +  ++ L LS NHF       +LEPFF    N S L+      N 
Sbjct: 224 SNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNS 283

Query: 130 INAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW 189
           +  EIT S         +  LS+                  +L  + L   +++G  P  
Sbjct: 284 LGGEITSS---------VRHLSV------------------NLVQIHLDQNRIHGSIPPE 316

Query: 190 LLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249
           +       +     N  L+GP    +    +L  + +S N+  G IP+E+GD+ P L + 
Sbjct: 317 ISNLLNLTLLNLSSN-LLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDI-PRLGLL 374

Query: 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHM 309
           + S N L GSIP SFGN+  L+ L L  NHL+G +P+ L   C+NLE L LS+NNL G +
Sbjct: 375 DVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLG-KCINLEILDLSHNNLTGTI 433

Query: 310 -FSRNFNLANLKL-LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWL 367
                 NL NLKL L L  N   G IP  LSK   +  + L++N LSG+IP  LG+   L
Sbjct: 434 PVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIAL 493

Query: 368 QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHG 426
           +++ +  N     +P    QL  L+ LD+S N ++G++P  F   S +K ++ S N+L G
Sbjct: 494 EHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSG 553

Query: 427 QLK-RGTF 433
            +  +G+F
Sbjct: 554 NVSDKGSF 561

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 236/509 (46%), Gaps = 98/509 (19%)

Query: 40  LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
           + S   LQ+L I N +L G++   + + + L ++D+SSN L G I SS L  L +++EL 
Sbjct: 102 ISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSS-LGKLKNLQELC 160

Query: 100 LSNNHF--QIPISLEPFFNHSRLKFF---YAENNQIN-AEITQSHSL-----------IP 142
           L++N    +IP  L    +   L+ F    +EN  +   +I+   S+           IP
Sbjct: 161 LNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRAGGNSELSGKIP 220

Query: 143 PKF----QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLI 198
            +      L  L L++    G + P  L     L+ + +    ++GE P  L  N ++LI
Sbjct: 221 EEIGNCRNLKVLGLAATKISG-SLPVSLGQLSKLQSLSVYSTMLSGEIPKEL-GNCSELI 278

Query: 199 QLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG 258
            L + ++ L+G     +   + L  + +  NN  G IP EIG  + SL   + SMN   G
Sbjct: 279 NLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIG-FMKSLNAIDLSMNYFSG 337

Query: 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLA----------------------------- 289
           +IP SFGN+  LQ L LS+N++TG IP  L+                             
Sbjct: 338 TIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKEL 397

Query: 290 ------------------VGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG 331
                              GC NL++L LS N L G + +  F L NL  L L  N   G
Sbjct: 398 NIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISG 457

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLG------------------------NLTWL 367
            IP  +  C+SL  L L NN ++G IP+ +G                        N   L
Sbjct: 458 VIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQL 517

Query: 368 QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF-HPLSIKQVHLSKNMLHG 426
           Q + + NN L+G +P+    L  LQ+LD+S N+++G +P    H +S+ ++ LSKN  +G
Sbjct: 518 QMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNG 577

Query: 427 QLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           ++   +  +C++L  LDLS N ++G+IP+
Sbjct: 578 EIPS-SLGHCTNLQLLDLSSNNISGTIPE 605

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 217/456 (47%), Gaps = 60/456 (13%)

Query: 25  LSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 84
           L+LSD N    +   +  L  L  + +  N L G +P  + + +SL+ LD+S N+L+G I
Sbjct: 73  LNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDI 132

Query: 85  SSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIP 142
             S +  L  +E+L+L NN     IP +L    N   LK      N+++ EI        
Sbjct: 133 PFS-ISKLKQLEQLILKNNQLIGPIPSTLSQIPN---LKILDLAQNKLSGEI-------- 180

Query: 143 PKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSV 202
                               P+ +Y    L+Y+ L    + G     L +  T L    V
Sbjct: 181 --------------------PRLIYWNEVLQYLGLRGNNLVGNISPDLCQL-TGLWYFDV 219

Query: 203 VNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIG---------------------- 240
            N+SL G     I +    ++LD+S N   G IP +IG                      
Sbjct: 220 RNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLSGKIPSVI 279

Query: 241 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL 300
            ++ +L V + S N L GSIP   GN+ F + L L +N LTG IP  L      L  L L
Sbjct: 280 GLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELG-NMSKLHYLEL 338

Query: 301 SNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW 360
           ++N+L GH+      L +L  L +  N   G IP  LS C++L  L+++ N  SG IPR 
Sbjct: 339 NDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRA 398

Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS-IKQVHL 419
              L  + Y+ + +N+++G IPVE  ++ +L  LD+S+N I+G +P+    L  + +++L
Sbjct: 399 FQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNL 458

Query: 420 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           S+N + G +  G F N  S++ +DLS N ++G IP+
Sbjct: 459 SRNHITGVVP-GDFGNLRSIMEIDLSNNDISGPIPE 493

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
255581263	912	serine-threonine protein kinase, plant-t	0.973	0.486	0.547	1e-122
224102049	577	predicted protein [Populus trichocarpa]	0.905	0.715	0.489	5e-96
224142481	781	predicted protein [Populus trichocarpa]	0.903	0.527	0.488	3e-95
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.973	0.303	0.462	6e-94
224073436	1014	predicted protein [Populus trichocarpa]	0.978	0.439	0.453	7e-92
224123984	1016	predicted protein [Populus trichocarpa]	0.973	0.437	0.459	9e-92
224134891	953	predicted protein [Populus trichocarpa]	0.971	0.464	0.450	4e-89
224073422	969	predicted protein [Populus trichocarpa]	0.973	0.458	0.452	7e-89
224124490	981	predicted protein [Populus trichocarpa]	0.953	0.443	0.447	6e-87
224098008	1097	predicted protein [Populus trichocarpa]	0.973	0.404	0.434	6e-86

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/453 (54%), Positives = 318/453 (70%), Gaps = 9/453 (1%)

Query: 4   RIALNTSFLQIIGESMPSLKYLSLSDSNSSRILD--RGLCSLVHLQELYIDNNDLRGSLP 61
           +I L  SFLQ +G  M SLK LSLS    +  L   +GLC L+HL+ L + +N+  G LP
Sbjct: 186 KIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNVQGLCELIHLRVLDVSSNEFHGILP 244

Query: 62  WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLK 121
           WCL+N+TSL++LD+SSNQ  G IS+SPL  L S+ +L +SNNHFQ+P SL PFFNHS LK
Sbjct: 245 WCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNLK 304

Query: 122 FFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIK 181
               +NN I  E  + HS   P+FQL  + + SGY    TFP FLYHQ++L++VDLSH+ 
Sbjct: 305 HIRGQNNAIYLE-AELHS--APRFQLISI-IFSGYGICGTFPNFLYHQNNLQFVDLSHLS 360

Query: 182 MNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD 241
           + GEFP WLL NNT+L  L +VN+SL+G  +LP+H H  L  LDIS N+   HIP+EIG 
Sbjct: 361 LKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGT 420

Query: 242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS 301
            LP L + N S N  DGSIPSSFGNM  L+ILDLSNN L+G IPEHLA GC +L +L LS
Sbjct: 421 FLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILS 480

Query: 302 NNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWL 361
           NN+L+G MFS+ FNL NL  L+L+ N F G IP+SLSK S+L  + L++N LSG IP W+
Sbjct: 481 NNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWI 539

Query: 362 GNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSK 421
           GNL++LQ +I+ NN L+G IPVEFCQL  L++LD+++N++SG LP+C  P SI  VHLS+
Sbjct: 540 GNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQ 599

Query: 422 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
           NM+ G      F     LVTLDLS NR+ G IP
Sbjct: 600 NMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIP 631

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102049|ref|XP_002334215.1| predicted protein [Populus trichocarpa] gi|222870030|gb|EEF07161.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 215/439 (48%), Positives = 276/439 (62%), Gaps = 26/439 (5%)

Query: 40  LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
           LC L  LQEL I  N++ GSLP C +N+T+L+ LD+S N  TG+IS SP+  LTSI +L 
Sbjct: 7   LCELKQLQELDISYNNITGSLPSCFSNLTNLQALDISFNHFTGNISLSPIGSLTSIRDLN 66

Query: 100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG 159
           LS+NHFQIPISL PFFN S LK    + N++       H+LIP +FQL RLSL+     G
Sbjct: 67  LSDNHFQIPISLGPFFNLSNLKNLNGDRNELYESTELVHNLIP-RFQLQRLSLAYTGSGG 125

Query: 160 VTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHK 219
            TF K LY+QHDL++VDLSHIKM GEFP+WLL+NNTKL +L +VN+S +G F+L  HS  
Sbjct: 126 -TFLKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEELYLVNNSFSGSFQLANHSLD 184

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
           +L  LDIS N+    IP EIG   P L   N S N   GSIPSS  NM  L+ILDLSNN 
Sbjct: 185 RLSHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFGGSIPSSISNMSSLEILDLSNNE 244

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
           L+G IPEHL   C++L  L LSNN+L+G  F RNFNLA L  L L GN+  G +P SLS 
Sbjct: 245 LSGNIPEHLVEDCLSLRGLVLSNNHLKGQFFWRNFNLAYLTDLILSGNQLTGILPNSLSN 304

Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
            S LE L ++ N+LSG+IPRW+ N++ L+Y+ +  N+L G +P  FC    +  + +S N
Sbjct: 305 GSRLEALDVSLNNLSGKIPRWIRNMSSLEYLDLSENNLFGSLPSSFCSSMMMTEVYLSKN 364

Query: 400 NISGSLPACFHP-LSIKQVHLSKNMLHGQL--KRG---------------------TFFN 435
            + GSL   F   LS+ ++ LS N L G++  K G                     TF N
Sbjct: 365 KLEGSLIDAFDGCLSLNKLDLSHNSLTGEIPFKLGYLGNIQVLNLSHNSLTGPIPPTFSN 424

Query: 436 CSSLVTLDLSYNRLNGSIP 454
              + +LD+SYN LNG IP
Sbjct: 425 LKKIESLDISYNNLNGEIP 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 215/440 (48%), Positives = 277/440 (62%), Gaps = 28/440 (6%)

Query: 17  ESMPSLKYLSLSDSNSSRILD-RGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
           E + SLK+L+L ++     +D +GLC L  LQEL I  NDL G LP CL N+ +L++LD+
Sbjct: 49  EGLSSLKHLNLDNNQLKGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDI 107

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEIT 135
           S N  +G+IS S +  LTSI +L LS+NHFQIPISL PFFN S LK    ++N+I     
Sbjct: 108 SFNNFSGNISLSRIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTE 167

Query: 136 QSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 195
             H+LIP +FQL RLSL+  +  G TFPKFLY+QHDL++VDLSHIK+ GEFP+WLL+NNT
Sbjct: 168 LVHNLIP-RFQLQRLSLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNT 225

Query: 196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
           KL  L +VN SL+G  +LP  SH  L  LDIS N+ +  IP +IG   P L   N S N 
Sbjct: 226 KLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNY 285

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFN 315
             GSIPSS  NM  L +LDLSNN L+G IPE L  GC++L  L LSNN+L+G  F R+FN
Sbjct: 286 FSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFN 345

Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
           LA L  L L GN+  G +P SLS  S LE L ++ N+LSG+IPRW+G ++ LQY+ +  N
Sbjct: 346 LAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSEN 405

Query: 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFN 435
           +L G +P  FC                          ++ +V+LSKN L G L  G    
Sbjct: 406 NLYGSLPSSFCS-----------------------SRTMTEVYLSKNKLEGSLI-GALDG 441

Query: 436 CSSLVTLDLSYNRLNGSIPD 455
           C SL  LDLS+N   G IP+
Sbjct: 442 CLSLNRLDLSHNYFGGGIPE 461

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 210/454 (46%), Positives = 290/454 (63%), Gaps = 10/454 (2%)

Query: 7    LNTSFLQIIGESMPSLKYLSLSDS--NSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCL 64
            +++S LQI+ E M SLK LSL  +  N S+   +GLC L +LQEL + +N   GS+  CL
Sbjct: 704  ISSSILQIV-EVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCL 762

Query: 65   ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFF- 123
             N+TSLR LD+S N+ +G++ SS    L  +E L LS+N FQ    +  F  HS+L+   
Sbjct: 763  GNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLD 822

Query: 124  -YAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKM 182
                NN +  E ++  + +P  FQL    LSS      + P FL++QHDL  VDLS+  +
Sbjct: 823  LICGNNTLLLE-SEDQTWVP-SFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSL 880

Query: 183  NGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV 242
              +FPTWL++NNT+L +L++ N+SL G F LP   +     +DIS N  +G +P  I   
Sbjct: 881  EEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVS 940

Query: 243  LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN 302
            LP+L   N S N+ +GSIPS FG M+ L  LDLSNN  TG IPE LA+GC +LE L LS 
Sbjct: 941  LPNLMFLNVSRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSK 999

Query: 303  NNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLG 362
            N+L G MF R  NL +L+ L+L+ N F G+IP  LS  S LE L++++NS+SG++P W+G
Sbjct: 1000 NDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIG 1058

Query: 363  NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKN 422
            N++ L  ++MPNN LEG IPVEFC LD+L++LD+S+NN+SGSLP+CF P  +  VHL +N
Sbjct: 1059 NMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQEN 1118

Query: 423  MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
             L G L +  F     L TLD+  N L+G IPDW
Sbjct: 1119 HLTGPLTKA-FTRSMDLATLDIRNNNLSGGIPDW 1151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  344 bits (882), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 207/456 (45%), Positives = 285/456 (62%), Gaps = 10/456 (2%)

Query: 4   RIALNTSFLQIIGESMPSLKYLSLSDSNSSRIL-DRGLCSLVHLQELYIDNNDLRGSLPW 62
           R +L  +FLQ IG ++P LK LS+++ +    L  +G C L +L++L +  N+L GSLP 
Sbjct: 233 RTSLPINFLQNIG-ALPDLKVLSVAECDLHGTLPAQGWCELKNLRQLDLSGNNLGGSLPD 291

Query: 63  CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKF 122
           CL N++SL++LDVS NQ TG+I+S PL +LTS+E L LSNN F++PIS++PF NHS LKF
Sbjct: 292 CLGNLSSLQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKF 351

Query: 123 FYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED-GVTFPKFLYHQHDLEYVDLSHIK 181
           F +ENN++  E     +LI PKFQL    LS   E   V  P FLY+Q+D+  +DLSH  
Sbjct: 352 FSSENNKLVTEPAAFDNLI-PKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNN 410

Query: 182 MNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD 241
           +   FP+WLL+NNT+L QL + N+S  G  +L  H +  +  LDIS NN  G IP +I  
Sbjct: 411 ITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICL 470

Query: 242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS 301
           + P+++    + N   G IPS  GN+  L+ILDLSNN L+    E L      +  L LS
Sbjct: 471 IFPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTT----IWFLKLS 526

Query: 302 NNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL-EGLHLNNNSLSGRIPRW 360
           NNNL G + +  FN + L+ L L GN F G+I   L     +   L L++N  SG +PRW
Sbjct: 527 NNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRW 586

Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLS 420
           L N T L  I +  N+ +G I  +FC+L+ L+ LD+S+NN+SG +P+CF P  I  VHLS
Sbjct: 587 LVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLS 646

Query: 421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
           +N L G L  G F+N SSLVT+DL  N   GS P+W
Sbjct: 647 ENRLSGPLTYG-FYNNSSLVTMDLRDNNFTGSFPNW 681

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  343 bits (881), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 209/455 (45%), Positives = 278/455 (61%), Gaps = 11/455 (2%)

Query: 6   ALNTSFLQIIGESMPSLKYLSLSDSNSSRIL-DRGLCSLVHLQELYIDNNDLRGSLPWCL 64
           +L  +FL  IG  +P+LK LS  + + +  L  +GLC L +L++L++  N+L GSLP C 
Sbjct: 251 SLPLNFLHNIG-VLPALKVLSAGECDLNGTLPAQGLCGLKNLEQLFLSENNLEGSLPDCF 309

Query: 65  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY 124
            N++SL++LDVS NQ  G+I+SSPL +L S+E + LSNNHFQ+PIS++PF NHS L+FF 
Sbjct: 310 KNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFS 369

Query: 125 AENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG--VTFPKFLYHQHDLEYVDLSHIKM 182
           ++NN++  E    H LI PKFQL   SLS    +   V  P FLY+QHDL  +DLS    
Sbjct: 370 SDNNRLVTEPMSFHDLI-PKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSF 428

Query: 183 NGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV 242
            G FP+WLL+NNT+L QL +  +S  G  +L  H +  +  +DIS NN  G IP  I  +
Sbjct: 429 IGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLI 488

Query: 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN 302
             +L+    + N L G IPS  GN   L +LDLSNN L+    E      + L  L LSN
Sbjct: 489 FSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF----ITLTFLKLSN 544

Query: 303 NNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL-EGLHLNNNSLSGRIPRWL 361
           NNL G + +   N + L  L L  N F G+I    S   ++   L L+NN  SG +PRW 
Sbjct: 545 NNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWF 604

Query: 362 GNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSK 421
            NLT +  I +  NH  G IPVEFC+LD L+ LD+SDNN+  S+P+CF+P  I  VHLSK
Sbjct: 605 VNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSK 664

Query: 422 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
           N L G L  G F+N SSLVTLDL  N   GSI +W
Sbjct: 665 NRLSGPLTYG-FYNSSSLVTLDLRDNNFTGSISNW 698

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 205/455 (45%), Positives = 278/455 (61%), Gaps = 12/455 (2%)

Query: 6   ALNTSFLQIIGESMPSLKYLSLSDSNSSRIL-DRGLCSLVHLQELYIDNNDLRGSLPWCL 64
           +L  +FLQ IG ++P+LK LS+++ +    L  +G C L +L++L +  N+  GSLP CL
Sbjct: 184 SLRINFLQNIG-ALPALKVLSVAECDLHGTLPAQGWCELKNLKQLDLARNNFGGSLPDCL 242

Query: 65  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY 124
            N++SL++LDVS NQ TG+ +S PL +L S+E L+LSNN F++PIS++PF NHS LKFF 
Sbjct: 243 GNLSSLQLLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFS 302

Query: 125 AENNQINAEITQSHSLIPPKFQLS--RLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKM 182
           +ENN++  E     +LI PKFQL   RLS S   E     P FLY+Q DL  +DLSH  +
Sbjct: 303 SENNRLVTEPVAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNI 361

Query: 183 NGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV 242
            G FP+WLL+NNT+L QL +  +   G  +L  H +  +  LDIS NN  G I  +I  +
Sbjct: 362 TGMFPSWLLKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLI 421

Query: 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN 302
            P+L+    + N   G IPS  GN+  L  LDLSNN L+    E L +       L LSN
Sbjct: 422 FPNLWTLRMAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLTI-----PVLKLSN 476

Query: 303 NNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSGRIPRWL 361
           N+L G + +  FN +  + L L GN F G+I    L     L  L L+NN  SG +PR  
Sbjct: 477 NSLGGQIPTSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIF 536

Query: 362 GNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSK 421
            N T L+ + +  NH +G IP +FC+L  LQ LD+S+NN+SG +P+CF P  +  VHLSK
Sbjct: 537 VNFTDLRVLDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSK 596

Query: 422 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
           N L G L  G FFN S LVT+DL  N L GSIP+W
Sbjct: 597 NRLSGPLTYG-FFNSSYLVTMDLRDNSLTGSIPNW 630

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 206/455 (45%), Positives = 277/455 (60%), Gaps = 11/455 (2%)

Query: 6   ALNTSFLQIIGESMPSLKYLSLSDSNSSRIL-DRGLCSLVHLQELYIDNNDLRGSLPWCL 64
           +L  +FLQ    ++P+LK LS+ + +    L  +G C L +L++L +  N+  G+LP CL
Sbjct: 210 SLPINFLQNT-RALPALKVLSVGECDLHGTLPAQGWCELKNLKQLDLARNNFGGALPDCL 268

Query: 65  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY 124
            N++SL +LDVS NQ TG+I S PL +L S+E L LSNN F++P S++PF NHS LKFF 
Sbjct: 269 GNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTSMKPFMNHSSLKFFS 328

Query: 125 AENNQINAEITQSHSLIPPKFQLSRLSLSSGYED-GVTFPKFLYHQHDLEYVDLSHIKMN 183
           +ENN++  E     +LIP KFQL  LSL    E   V  P FLY+Q+DL  +DLSH  + 
Sbjct: 329 SENNRLVTEPAAFDNLIP-KFQLVFLSLLKTTEALNVHIPDFLYYQYDLRVLDLSHNNIT 387

Query: 184 GEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVL 243
           G FP+WLL+NNT++ QL + ++S  G  +LP H +  +  LDIS NN    IP +I  +L
Sbjct: 388 GMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMNSQIPKDICLIL 447

Query: 244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNN 303
           P+L       N   G IPS  GN+  L +LDLSNN L+    E L      L  L LSNN
Sbjct: 448 PNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLTT----LMFLKLSNN 503

Query: 304 NLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSGRIPRWLG 362
           NL G +    FN + L+ L L GN F G+I   SL +      L L+NN  SG +PRW  
Sbjct: 504 NLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSGMLPRWFV 563

Query: 363 NLTWLQYIIMPNNHLEGLIPVE-FCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSK 421
           N T L+ I +  NH +G IP + FC+ D L+ LD+S+NN+SG +P+CF P  I  +HLSK
Sbjct: 564 NSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQITHLHLSK 623

Query: 422 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
           N L G L  G F+N SSLVT+DL  N    SIP+W
Sbjct: 624 NRLSGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNW 657

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124490|ref|XP_002330036.1| predicted protein [Populus trichocarpa] gi|222871461|gb|EEF08592.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 199/445 (44%), Positives = 271/445 (60%), Gaps = 10/445 (2%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           ++PSLK L    S  +    +G C L +L+ L++  N+L+G LP C  N++SL+ILD+S 
Sbjct: 215 ALPSLKTLHARYSRFTH-FGKGWCELKNLEHLFLSGNNLKGVLPPCFGNLSSLQILDLSY 273

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           NQL G+I+ S + HLT +E L +SNN+FQ+PIS   F NHS LKFF  +NN++ A    S
Sbjct: 274 NQLEGNIAFSHISHLTQLEYLSVSNNYFQVPISFGSFMNHSNLKFFECDNNELIA--APS 331

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVT--FPKFLYHQHDLEYVDLSHIKMNGE-FPTWLLENN 194
              + PKF+L   S S+     +   FP FL  Q+DL +VDLSH K  GE FP+WL ENN
Sbjct: 332 FQPLVPKFRLRVFSASNCTPKPLEAGFPNFLQSQYDLVFVDLSHNKFVGESFPSWLFENN 391

Query: 195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMN 254
           TKL +L + + S  GP +LP H    L+ +D+S N+  G I   I  + P L  F  + N
Sbjct: 392 TKLNRLYLRDTSFIGPLQLPQHPTPNLQTVDMSGNSIHGQIARNICSIFPRLKNFMMANN 451

Query: 255 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH-LAVGCVNLESLALSNNNLEGHMFSRN 313
           +L G IP  FGNM  L+ LDLSNNH++ E+ EH L     +L SL LSNNN +G +    
Sbjct: 452 SLTGCIPPCFGNMSSLEYLDLSNNHMSCELLEHNLPTVGSSLWSLKLSNNNFKGRLPLSV 511

Query: 314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGN--LTWLQYII 371
           FN+ +L+ L L+GN+F G++  + S  SS     ++NN LSG +PR +GN  +   Q I 
Sbjct: 512 FNMTSLEYLFLDGNKFAGQVSGTFSLASSFSWFDISNNLLSGMLPRGIGNSSIYRFQAID 571

Query: 372 MPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG 431
           +  NH EG IP E+     L+ LD+S+NN+SGSLP  F    ++ VHL  N L G L   
Sbjct: 572 LSRNHFEGTIPKEYFNSYWLEFLDLSENNLSGSLPLGFLAPHLRHVHLYGNRLTGPLPNA 631

Query: 432 TFFNCSSLVTLDLSYNRLNGSIPDW 456
            F+N SSLVTLDL YN L G IP+W
Sbjct: 632 -FYNISSLVTLDLGYNNLTGPIPNW 655

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 198/456 (43%), Positives = 276/456 (60%), Gaps = 12/456 (2%)

Query: 6   ALNTSFLQIIGESMPSLKYLSLSDSNSSRIL-DRGLCSLVHLQELYIDNNDLRGSLPWCL 64
           +L  +FLQ  G ++P+LK LS+++ +    L  +G C L +L++L +  N+  G+LP CL
Sbjct: 372 SLPINFLQNTG-ALPALKVLSVAECDLHGTLPAQGWCELKNLKQLDLARNNFGGALPDCL 430

Query: 65  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY 124
            N++SL++LDVS NQ TG+I+  PL  L S+E L LSNN F++PIS++PF NHS LKFF 
Sbjct: 431 GNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEFLSLSNNLFEVPISMKPFMNHSSLKFFS 490

Query: 125 AENNQINAEITQSHSLIPPKFQLSRLSLSSGYED---GVTFPKFLYHQHDLEYVDLSHIK 181
           +ENN++  E     +LI PKFQL    LSS        V    FLY+Q+DL  +DLSH  
Sbjct: 491 SENNRLVTESAAFDNLI-PKFQLVFFRLSSSPTSEALNVEILDFLYYQYDLRTLDLSHNN 549

Query: 182 MNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD 241
           + G FP+WLL+NNT++ QL +  +S  G  +L  H +  +  LDIS NN  G IP +I  
Sbjct: 550 IFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMTELDISNNNINGQIPKDICL 609

Query: 242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS 301
           + P+L++   + N   G IPS  GN   L  LDLSNN L+    E L      ++ L LS
Sbjct: 610 IFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQLSTVKLEQLTT----IQVLKLS 665

Query: 302 NNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSGRIPRW 360
           NN+L G + +  FN +  + L L GN F G+I    L        L L+NN  SG +PR 
Sbjct: 666 NNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDFPLYGWKVWSVLDLSNNQFSGMLPRS 725

Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLS 420
             N T+ + + +  N  +G IP +FC+LD L+ LD+SDN +SG +P+CF+P  I  +HLS
Sbjct: 726 FFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDLSDNYLSGYMPSCFNPPQITHIHLS 785

Query: 421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
           KN L G L  G F+N SSLVT+DL  N   GSIP+W
Sbjct: 786 KNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGSIPNW 820

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.892	0.375	0.389	1.7e-64
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.890	0.406	0.374	9.7e-64
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.903	0.426	0.368	6.9e-63
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.938	0.480	0.342	9.8e-58
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.927	0.465	0.355	3.8e-57
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.888	0.414	0.361	4.1e-56
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.824	0.463	0.315	1.9e-50
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.947	0.462	0.330	1.1e-48
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.925	0.415	0.317	9.5e-43
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.934	0.390	0.325	1.9e-42

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 1.7e-64, P = 1.7e-64
 Identities = 162/416 (38%), Positives = 233/416 (56%)

Query:    39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI-EE 97
             G+C L+ L+EL + +N L  SLP+CL N+T LR LD+S+NQL G++SS  +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:    98 LMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYE 157
             L L +N+F          N +RL  F   ++++     Q+ S   P FQL  L LS+   
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKL-SSKVGVIQVQTESSWAPLFQLKMLYLSN-CS 468

Query:   158 DGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHS 217
              G T   FL HQ DL +VDLSH K+ G FPTWL++NNT+L  + +  +SL    +LPI  
Sbjct:   469 LGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILV 527

Query:   218 HKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 277
             H  L++LDIS+N     I  +IG V P+L   N S N   G+IPSS G MK LQ+LD+S+
Sbjct:   528 HG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSS 586

Query:   278 NHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSL 337
             N L G++P     GC              G +FS++ NL  L  L L+GN F G + + L
Sbjct:   587 NGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGL 646

Query:   338 SKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS 397
              K  +L  L +++N  SG +P W+G ++ L Y+ M  N L+G  P    Q   ++++DIS
Sbjct:   647 LKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDIS 705

Query:   398 DNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 453
              N+ SGS+P   +  S++++ L  N   G L  G  F  + L  LDL  N  +G I
Sbjct:   706 HNSFSGSIPRNVNFPSLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKI 760

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 158/422 (37%), Positives = 230/422 (54%)

Query:    39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
             G C   +++EL + NN L G  P CL ++T LR+LD+SSNQLTG++ S+ L +L S+E L
Sbjct:   253 GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYL 311

Query:    99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED 158
              L  N+F+   SL    N S+LK    ++   + E+    S   PKFQL  ++L S   +
Sbjct:   312 SLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSW-KPKFQLVVIALRSCNLE 370

Query:   159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSH 218
              V  P FL HQ DL +VDLS  +++G FP+WLLENNTKL  L + N+S    F+LP  +H
Sbjct:   371 KV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAH 427

Query:   219 KQLRLLDISTNNFRGHIPVE-IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 277
               L  L++S N F  H+ ++  G +LP L   N + N   G++PSS  NMK ++ LDLS+
Sbjct:   428 NLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSH 485

Query:   278 NHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSL 337
             N   G++P     GC              G +F    N   L ++ ++ N F G I +  
Sbjct:   486 NRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGF 545

Query:   338 SKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS 397
                 SL  L ++NN L+G IP W+G    L  + + NN LEG IP     +  LQ+LD+S
Sbjct:   546 RSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLS 605

Query:   398 DNNISGSLPACFHPLSIKQ---VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
              N +SG +P   H  SI     + L  N L G +      N   ++ LDL  NRL+G++P
Sbjct:   606 SNRLSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLP 660

Query:   455 DW 456
             ++
Sbjct:   661 EF 662

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 155/421 (36%), Positives = 228/421 (54%)

Query:    36 LDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 95
             +  G+C L ++QEL +  N L G LP CL ++T LR+LD+SSN+LTG++ SS L  L S+
Sbjct:   236 IQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSL 294

Query:    96 EELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSG 155
             E L L +N F+   S     N S L      +   + ++  S S   PKFQLS ++L S 
Sbjct:   295 EYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRSC 353

Query:   156 YEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPI 215
               + V  P FL HQ DL +VDLS   ++G+ P+WLL NNTKL ++ ++ ++L   F++P 
Sbjct:   354 NMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKL-KVLLLQNNLFTSFQIPK 410

Query:   216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 275
              +H  L  LD+S N+F    P  IG + P L   N S N    ++PSS GNM  +Q +DL
Sbjct:   411 SAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDL 469

Query:   276 SNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQ 335
             S N   G +P     GC              G +F  + N  N+  L ++ N F G+I Q
Sbjct:   470 SRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQ 529

Query:   336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
              L    +LE L ++NN+L+G IP W+G L  L  +++ +N L+G IP+      SLQ+LD
Sbjct:   530 GLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLD 589

Query:   396 ISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
             +S N++SG +P      +   + L  N L G +      N      LDL  NR +G IP+
Sbjct:   590 LSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVE---ILDLRNNRFSGKIPE 646

Query:   456 W 456
             +
Sbjct:   647 F 647

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 9.8e-58, P = 9.8e-58
 Identities = 150/438 (34%), Positives = 238/438 (54%)

Query:    18 SMPSLKYLSLSDSNSSRILDR-GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
             ++ +L+ L LS++  S  L + G+C L  LQEL +  N   G +P C +  + LR+LD+S
Sbjct:   151 NLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLS 210

Query:    77 SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
             SN L+G I    +    S+E L L +N F+   SL      + LK F   +     +I +
Sbjct:   211 SNHLSGKIPYF-ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVE 269

Query:   137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
             ++     + QLS + LS      +  P FL++Q +L  +DLS+  ++G FPTWLLENNT+
Sbjct:   270 TNVSGGLQSQLSSIMLSHCNLGKI--PGFLWYQQELRVIDLSNNILSGVFPTWLLENNTE 327

Query:   197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNAL 256
             L  L + N+S      LP  + ++L++LD+S NNF   +P ++G +L SL   N S N  
Sbjct:   328 LQALLLQNNSFK-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEF 385

Query:   257 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNL 316
              G++PSS   M+ ++ +DLS N+ +G++P +L  GC              G +  ++ + 
Sbjct:   386 LGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDE 445

Query:   317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH 376
              +L  L ++ N F G+IP++L     L  + L+NN L+G IPRWLGN  +L+ + + NN 
Sbjct:   446 TSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNF-FLEVLRISNNR 504

Query:   377 LEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNC 436
             L+G IP     +  L +LD+S N +SGSLP          + L  N L G +    ++  
Sbjct:   505 LQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLHNNNLTGSIPDTLWYG- 563

Query:   437 SSLVTLDLSYNRLNGSIP 454
               L  LDL  N+L+G+IP
Sbjct:   564 --LRLLDLRNNKLSGNIP 579

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.8e-57, Sum P(2) = 3.8e-57
 Identities = 156/439 (35%), Positives = 221/439 (50%)

Query:    20 PSLKYLSLSDSNSSRILD----RGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
             P LK L   D +S+ I      +  C + +LQEL +   +  G LP C  N+  LR LD+
Sbjct:   192 PYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDL 251

Query:    76 SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEIT 135
             SSNQLTG+I  S    L S+E L LS+N F+   SL P  N ++LK F   +     ++ 
Sbjct:   252 SSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQV- 309

Query:   136 QSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 195
             +  S   P FQLS L L     + +  P FL +Q +L  VDLS  +++G  PTWLLENN 
Sbjct:   310 KIESTWQPLFQLSVLVLRLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNP 367

Query:   196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
             +L  L + N+S    F++P   H  L++LD S NN  G  P   G VLP+L   N S N 
Sbjct:   368 ELEVLQLKNNSFT-IFQMPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNG 425

Query:   256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFN 315
               G+ PSS G M  +  LDLS N+L+GE+P+     C              GH   R  N
Sbjct:   426 FQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTN 485

Query:   316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
               +L +L++  N F G+I   L     L  L ++NN L G +P  L    +L ++ +  N
Sbjct:   486 FTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGN 545

Query:   376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFN 435
              L G +P     LD+  +L + +NN +G +P  F   SI+ + L  N L G + +  F +
Sbjct:   546 LLSGALP-SHVSLDN--VLFLHNNNFTGPIPDTFLG-SIQILDLRNNKLSGNIPQ--FVD 599

Query:   436 CSSLVTLDLSYNRLNGSIP 454
                +  L L  N L G IP
Sbjct:   600 TQDISFLLLRGNSLTGYIP 618

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 4.1e-56, P = 4.1e-56
 Identities = 152/420 (36%), Positives = 222/420 (52%)

Query:    41 CSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 100
             C + +L++L +  N   G LP CL N+  LR+LD+SSNQL+G++ +S    L S+E L L
Sbjct:   257 CEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSL 315

Query:   101 SNNHFQIPISLEPFFNHSRLKFFYAENNQINAEI-TQSHSLIPPKFQLSRLSLSSGYEDG 159
             S+N+F+   SL P  N ++LK F   +     ++ T+S+ L  PKFQL+  +L   +   
Sbjct:   316 SDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWL--PKFQLTVAALP--FCSL 371

Query:   160 VTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHK 219
                P FL +Q +L  VDLS  +++G+ PTWLLENN +L  L + N+S    F++P   HK
Sbjct:   372 GKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK 430

Query:   220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
              L++LD S N+  G +P  IG VLP L   N S N   G++PSS G M  +  LDLS N+
Sbjct:   431 -LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNN 489

Query:   280 LTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
              +GE+P  L  GC              G +      L +L +L++  N F GEI   L  
Sbjct:   490 FSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRT 549

Query:   340 CSSLEGLHLNNNSLSGRIPRWLG-NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD 398
               +L     +NN L+G I   +  + + L  +++ NN LEG +P     +  L  LD+S 
Sbjct:   550 LVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSG 609

Query:   399 NNISGSLPACF--HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
             N +SG LP+        IK + L  N   G L      N      LDL  N+L+GSIP +
Sbjct:   610 NLLSGDLPSSVVNSMYGIK-IFLHNNSFTGPLPVTLLENA---YILDLRNNKLSGSIPQF 665

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
 Identities = 126/399 (31%), Positives = 197/399 (49%)

Query:    15 IGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILD 74
             IG S+  L  L+L  +  +  +   +  L  L+ + + NN L   +P  + N+ +L  L 
Sbjct:   198 IG-SLVELLTLTLRQNMFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLS 256

Query:    75 VSSNQLTGSISSSPLVH-LTSIEELMLSNNHF---QIPISLEPFFNHSRLKFFYAENNQI 130
             +S N+L+G I SS  +H L ++E L L NN+    +IP +    F   +LK    E N  
Sbjct:   257 LSMNKLSGGIPSS--IHNLKNLETLQLENNNGLSGEIPAAW--LFGLQKLKVLRLEGN-- 310

Query:   131 NAEITQSHSLIPPKFQLSRLSLSS-GYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW 189
             N     ++  + P+F+L+ LSL S G E  +  P +L +Q  L Y+DLS  ++ G FP W
Sbjct:   311 NKLQWNNNGYVFPQFKLTHLSLRSCGLEGNI--PDWLKNQTALVYLDLSINRLEGRFPKW 368

Query:   190 LLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249
             L +   + I LS  ++ L G     +     L  L +S NNF G IP  IG+    + V 
Sbjct:   369 LADLKIRNITLS--DNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGE--SQVMVL 424

Query:   250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHM 309
               S N   GS+P S   + FL++LDLS N L+GE P       +                
Sbjct:   425 MLSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFPRFRPESYLEWLDISSNEFSGDVPA 484

Query:   310 FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW-LQ 368
             +   F   +  +L +  N F GE PQ+    S L  L L++N +SG +   +  L+  ++
Sbjct:   485 Y---FG-GSTSMLLMSQNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVE 540

Query:   369 YIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA 407
              + + NN L+G IP     L SL++LD+S+NN+ G LP+
Sbjct:   541 VLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPS 579

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 151/457 (33%), Positives = 219/457 (47%)

Query:     7 LNTSFLQIIGESMPSLKYLSLSDSNSSRILD-RGLCSLVHLQELYIDNNDLRGSLPW-CL 64
             LN S  ++I   +  LK L LS +  S  ++ + L +L++L+ L +  N + G +P    
Sbjct:   185 LNGSMQELI--HLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNHVDGPIPIEVF 242

Query:    65 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ--IPISLEPFFNHSRLKF 122
               + +LR LD+  N   G I    L  L  +  L LS+N     +P S   F +   L++
Sbjct:   243 CKLKNLRDLDLKGNHFVGQIPLC-LGSLKKLRVLDLSSNQLSGDLPSS---FSSLESLEY 298

Query:   123 FYAENNQINAEITQSHSLIPPKFQLSRLS--LSSGYEDGVTFPKFLYHQHDLEYVDLSHI 180
                 +N  +     S SL  P   L+ L   +   +      P FL +Q  L  VDLS  
Sbjct:   299 LSLSDNNFDG----SFSL-NPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDLSSN 353

Query:   181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIG 240
              ++G  PTWLL NN +L  L + N+S    F +P   H  L++ D S NN  G  P ++ 
Sbjct:   354 NLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQIFDFSANNI-GKFPDKMD 410

Query:   241 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXX 300
               LP+L   N S N   G  P+S G MK +  LDLS N+ +G++P     GCV       
Sbjct:   411 HALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKL 470

Query:   301 XXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW 360
                   G    R  N  +L +L+++ N F G I   LS  + L  L ++NN LSG IPRW
Sbjct:   471 SHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRW 530

Query:   361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHP-LSIKQVHL 419
             L    +L Y+++ NN LEG IP     +  L  LD+S N  SG+LP+     L I  + L
Sbjct:   531 LFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGI-YMFL 589

Query:   420 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
               N   G +   T     S+  LDL  N+L+GSIP +
Sbjct:   590 HNNNFTGPIP-DTLLK--SVQILDLRNNKLSGSIPQF 623

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 9.5e-43, P = 9.5e-43
 Identities = 142/447 (31%), Positives = 227/447 (50%)

Query:    17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
             + +  LK LSLS++N +  ++  L +  HLQ+L + +N+L G +P  L ++TSL+ LD++
Sbjct:    98 QKLQRLKVLSLSNNNFTGNIN-ALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLT 156

Query:    77 SNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINAEI 134
              N  +G++S     + +S+  L LS+NH   QIP +L   F  S L       N+ +   
Sbjct:   157 GNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTL---FRCSVLNSLNLSRNRFSG-- 211

Query:   135 TQSHSLIPPKFQLSRL---SLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWL- 190
               + S +   ++L RL    LSS    G + P  +   H+L+ + L   + +G  P+ + 
Sbjct:   212 --NPSFVSGIWRLERLRALDLSSNSLSG-SIPLGILSLHNLKELQLQRNQFSGALPSDIG 268

Query:   191 LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250
             L  +   + LS  ++  +G     +   K L   D+S N   G  P  IGD +  L   +
Sbjct:   269 LCPHLNRVDLS--SNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGD-MTGLVHLD 325

Query:   251 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMF 310
              S N L G +PSS  N++ L+ L+LS N L+GE+PE L   C              G++ 
Sbjct:   326 FSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESLE-SCKELMIVQLKGNDFSGNIP 384

Query:   311 SRNFNLANLKLLQLEGNRFVGEIPQSLSKC-SSLEGLHLNNNSLSGRIPRWLGNLTWLQY 369
                F+L  L+ +   GN   G IP+  S+   SL  L L++NSL+G IP  +G    ++Y
Sbjct:   385 DGFFDLG-LQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRY 443

Query:   370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA--CFHPLSIKQVHLSKNMLHGQ 427
             + +  NH    +P E   L +L +LD+ ++ + GS+PA  C    S++ + L  N L G 
Sbjct:   444 LNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPADIC-ESQSLQILQLDGNSLTGS 502

Query:   428 LKRGTFFNCSSLVTLDLSYNRLNGSIP 454
             +  G   NCSSL  L LS+N L G IP
Sbjct:   503 IPEG-IGNCSSLKLLSLSHNNLTGPIP 528

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 148/454 (32%), Positives = 226/454 (49%)

Query:    10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWC-LANMT 68
             S L I G+++ S K    S+SN  + +         + E+ +   D +G LP   L  + 
Sbjct:    40 SQLNISGDALSSWK---ASESNPCQWVGIKCNERGQVSEIQLQVMDFQGPLPATNLRQIK 96

Query:    69 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAE 126
             SL +L ++S  LTGSI    L  L+ +E L L++N    +IP+ +   F   +LK     
Sbjct:    97 SLTLLSLTSVNLTGSIPKE-LGDLSELEVLDLADNSLSGEIPVDI---FKLKKLKILSLN 152

Query:   127 NNQINAEI-TQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIK-MNG 184
              N +   I ++  +L+     L  L+L      G   P+ +    +LE       K + G
Sbjct:   153 TNNLEGVIPSELGNLV----NLIELTLFDNKLAG-EIPRTIGELKNLEIFRAGGNKNLRG 207

Query:   185 EFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV-- 242
             E P W + N   L+ L +   SL+G     I + K+++ + + T+   G IP EIG+   
Sbjct:   208 ELP-WEIGNCESLVTLGLAETSLSGRLPASIGNLKKVQTIALYTSLLSGPIPDEIGNCTE 266

Query:   243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXX 302
             L +LY++ NS++   GSIP S G +K LQ L L  N+L G+IP  L   C          
Sbjct:   267 LQNLYLYQNSIS---GSIPVSMGRLKKLQSLLLWQNNLVGKIPTELGT-CPELFLVDLSE 322

Query:   303 XXXXGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWL 361
                 G++  R+F NL NL+ LQL  N+  G IP+ L+ C+ L  L ++NN +SG IP  +
Sbjct:   323 NLLTGNI-PRSFGNLPNLQELQLSVNQLSGTIPEELANCTKLTHLEIDNNQISGEIPPLI 381

Query:   362 GNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLP-ACFHPLSIKQVHLS 420
             G LT L       N L G+IP    Q   LQ +D+S NN+SGS+P   F   ++ ++ L 
Sbjct:   382 GKLTSLTMFFAWQNQLTGIIPESLSQCQELQAIDLSYNNLSGSIPNGIFEIRNLTKLLLL 441

Query:   421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
              N L G +      NC++L  L L+ NRL G+IP
Sbjct:   442 SNYLSGFIPPD-IGNCTNLYRLRLNGNRLAGNIP 474

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181071 annotation not avaliable (645 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-34
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  178 bits (452), Expect = 2e-48
 Identities = 153/444 (34%), Positives = 236/444 (53%), Gaps = 18/444 (4%)

Query: 15  IGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILD 74
           I  +  SL+YL+LS++N +  + RG  S+ +L+ L + NN L G +P  + + +SL++LD
Sbjct: 113 IFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170

Query: 75  VSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINA 132
           +  N L G I +S L +LTS+E L L++N    QIP  L    +   LK+ Y   N ++ 
Sbjct: 171 LGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYNNLSG 226

Query: 133 EITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE 192
           EI      I     L+ L L      G   P  L +  +L+Y+ L   K++G  P  +  
Sbjct: 227 EIPYE---IGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF- 281

Query: 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNS 252
           +  KLI L + ++SL+G     +   + L +L + +NNF G IPV +   LP L V    
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLW 340

Query: 253 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSR 312
            N   G IP + G    L +LDLS N+LTGEIPE L     NL  L L +N+LEG +   
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKS 399

Query: 313 NFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM 372
                +L+ ++L+ N F GE+P   +K   +  L ++NN+L GRI     ++  LQ + +
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHGQLKRG 431
             N   G +P +      L+ LD+S N  SG++P     LS + Q+ LS+N L G++   
Sbjct: 460 ARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD- 517

Query: 432 TFFNCSSLVTLDLSYNRLNGSIPD 455
              +C  LV+LDLS+N+L+G IP 
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIPA 541

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (406), Expect = 2e-42
 Identities = 141/443 (31%), Positives = 224/443 (50%), Gaps = 52/443 (11%)

Query: 21  SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQL 80
           SL++L+L+ +     + R L  +  L+ +Y+  N+L G +P+ +  +TSL  LD+  N L
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 81  TGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINAEITQSH 138
           TG I SS L +L +++ L L  N     IP S+   F+  +L      +N ++ EI    
Sbjct: 249 TGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEI---- 300

Query: 139 SLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLI 198
                                   P+ +    +LE + L      G+ P  L    T L 
Sbjct: 301 ------------------------PELVIQLQNLEILHLFSNNFTGKIPVAL----TSLP 332

Query: 199 QLSVV---NDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV--LPSLYVFNNSM 253
           +L V+   ++  +G     +  H  L +LD+STNN  G IP  +     L  L +F+NS 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS- 391

Query: 254 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIP-EHLAVGCVNLESLALSNNNLEGHMFSR 312
             L+G IP S G  + L+ + L +N  +GE+P E   +  V    L +SNNNL+G + SR
Sbjct: 392 --LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF--LDISNNNLQGRINSR 447

Query: 313 NFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM 372
            +++ +L++L L  N+F G +P S      LE L L+ N  SG +PR LG+L+ L  + +
Sbjct: 448 KWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506

Query: 373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSI-KQVHLSKNMLHGQLKRG 431
             N L G IP E      L  LD+S N +SG +PA F  + +  Q+ LS+N L G++ + 
Sbjct: 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK- 565

Query: 432 TFFNCSSLVTLDLSYNRLNGSIP 454
              N  SLV +++S+N L+GS+P
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  151 bits (384), Expect = 2e-39
 Identities = 130/388 (33%), Positives = 195/388 (50%), Gaps = 14/388 (3%)

Query: 70  LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQ 129
           ++ +++S+NQL+G I        +S+  L LSNN+F   I      N   L      NN 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL---SNNM 151

Query: 130 INAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW 189
           ++ EI      I     L  L L      G   P  L +   LE++ L+  ++ G+ P  
Sbjct: 152 LSGEIPND---IGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRE 207

Query: 190 LLE-NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYV 248
           L +  + K I L   N  L+G     I     L  LD+  NN  G IP  +G++    Y+
Sbjct: 208 LGQMKSLKWIYLGYNN--LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265

Query: 249 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGH 308
           F    N L G IP S  +++ L  LDLS+N L+GEIPE L +   NLE L L +NN  G 
Sbjct: 266 F-LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGK 323

Query: 309 MFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQ 368
           +     +L  L++LQL  N+F GEIP++L K ++L  L L+ N+L+G IP  L +   L 
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383

Query: 369 YIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQ-VHLSKNMLHGQ 427
            +I+ +N LEG IP       SL+ + + DN+ SG LP+ F  L +   + +S N L G+
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443

Query: 428 LKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           +     ++  SL  L L+ N+  G +PD
Sbjct: 444 INSRK-WDMPSLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  136 bits (344), Expect = 2e-34
 Identities = 132/409 (32%), Positives = 204/409 (49%), Gaps = 20/409 (4%)

Query: 19  MPSLKYLSLSDSNSSRILDR---GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
           M SLK++ L  +N S  +     GL SL HL  +Y   N+L G +P  L N+ +L+ L +
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY---NNLTGPIPSSLGNLKNLQYLFL 267

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINAE 133
             N+L+G I  S +  L  +  L LS+N    +IP  +    N   L  F   +N    +
Sbjct: 268 YQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF---SNNFTGK 323

Query: 134 ITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN 193
           I  + + +P   +L  L L S    G   PK L   ++L  +DLS   + GE P  L  +
Sbjct: 324 IPVALTSLP---RLQVLQLWSNKFSG-EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-S 378

Query: 194 NTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSM 253
           +  L +L + ++SL G     + + + LR + +  N+F G +P E    LP +Y  + S 
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISN 437

Query: 254 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN 313
           N L G I S   +M  LQ+L L+ N   G +P+  + G   LE+L LS N   G +  + 
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKL 495

Query: 314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP 373
            +L+ L  L+L  N+  GEIP  LS C  L  L L++N LSG+IP     +  L  + + 
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKN 422
            N L G IP     ++SL  ++IS N++ GSLP+    L+I    ++ N
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  135 bits (341), Expect = 6e-34
 Identities = 94/234 (40%), Positives = 133/234 (56%), Gaps = 7/234 (2%)

Query: 224 LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFLQILDLSNNHLTG 282
           +D+S  N  G I   I   LP +   N S N L G IP   F     L+ L+LSNN+ TG
Sbjct: 74  IDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 283 EIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSS 342
            IP        NLE+L LSNN L G + +   + ++LK+L L GN  VG+IP SL+  +S
Sbjct: 133 SIPRGSIP---NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 343 LEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
           LE L L +N L G+IPR LG +  L++I +  N+L G IP E   L SL  LD+  NN++
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249

Query: 403 GSLPACFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           G +P+    L  ++ + L +N L G +   + F+   L++LDLS N L+G IP+
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 269 FLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNR 328
           F+  L L N  L G IP  ++    +L+S+ LS N++ G++     ++ +L++L L  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLG 362
           F G IP+SL + +SL  L+LN NSLSGR+P  LG
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 15/114 (13%)

Query: 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI 381
           L L+     G IP  +SK   L+ ++L+ NS+ G IP  LG++T L+ + +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 382 PVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFN 435
           P    QL SL+IL+++ N++SG +PA                L G+L     FN
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA---------------LGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 200 LSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGS 259
           L + N  L G     I   + L+ +++S N+ RG+IP  +G +  SL V + S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 260 IPSSFGNMKFLQILDLSNNHLTGEIPEHL 288
           IP S G +  L+IL+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 26/114 (22%)

Query: 224 LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 283
           L +     RG IP +I   L  L   N S N++ G+IP S G++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 284 IPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSL 337
           IPE L                           L +L++L L GN   G +P +L
Sbjct: 482 IPESLG-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 43  LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
           L HLQ + +  N +RG++P  L ++TSL +LD+S N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 103 NHF--QIPISL 111
           N    ++P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 24/82 (29%)

Query: 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTF 433
           N  L G IP +  +L  LQ +++S N+I G++P                         + 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SL 462

Query: 434 FNCSSLVTLDLSYNRLNGSIPD 455
            + +SL  LDLSYN  NGSIP+
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPE 484

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI 401
           +L+ L L+NN L+         L  L+ + +  N+L  + P  F  L SL+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 8e-04
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 45  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 104
           +L+ L + NN L          + +L++LD+S N LT SIS      L S+  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 105 F 105
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEG---HMFSRNFNLANLKLLQLEG 326
           L+ LDLSNN LT  IP+    G  NL+ L LS NNL       FS    L +L+ L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 327 NRF 329
           N  
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN 304
           SL + NN +  +      +F  +  L++LDLS N+LT  I      G  +L SL LS NN
Sbjct: 4   SLDLSNNRLTVIP---DGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 305 L 305
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 15  IGESMPSLKYL---SLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
           I   +  L++L   +LS ++    +   L S+  L+ L +  N   GS+P  L  +TSLR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 72  ILDVSSNQLTGSISSS 87
           IL+++ N L+G + ++
Sbjct: 494 ILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHL 377
           NLK L L  NR       +     +L+ L L+ N+L+   P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 67/263 (25%), Positives = 104/263 (39%), Gaps = 57/263 (21%)

Query: 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNS 252
            N   +    +N +        +     L  LD+  NN    IP  IG +  +L   + S
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLS 148

Query: 253 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSR 312
            N +  S+PS   N+  L+ LDLS N L+ ++P+ L     NL +L LS N +       
Sbjct: 149 DNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPK-LLSNLSNLNNLDLSGNKIS------ 199

Query: 313 NFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM 372
                              ++P  +   S+LE L L+NNS+   +   L NL  L  + +
Sbjct: 200 -------------------DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239

Query: 373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGT 432
            NN LE L       L +L+ LD+S+N IS                     +        
Sbjct: 240 SNNKLEDLPESI-GNLSNLETLDLSNNQIS--------------------SISSLGSL-- 276

Query: 433 FFNCSSLVTLDLSYNRLNGSIPD 455
               ++L  LDLS N L+ ++P 
Sbjct: 277 ----TNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
            L  +++  +S+ G     + S   L +LD+S N+F G IP  +G  L SL + N + N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 256 LDGSIPSSFG 265
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.9
KOG4341	483	consensus F-box protein containing LRR [General fu	98.89
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.84
PLN03150	623	hypothetical protein; Provisional	98.83
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.83
PLN03150	623	hypothetical protein; Provisional	98.82
KOG4341	483	consensus F-box protein containing LRR [General fu	98.81
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.71
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.49
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.46
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.95
KOG4308	478	consensus LRR-containing protein [Function unknown	92.51
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.51
smart00370	26	LRR Leucine-rich repeats, outliers.	91.51
KOG4308	478	consensus LRR-containing protein [Function unknown	88.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.63
smart00370	26	LRR Leucine-rich repeats, outliers.	88.63
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.9
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.89
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.35
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.03

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.2e-45  Score=381.21  Aligned_cols=441  Identities=31%  Similarity=0.479  Sum_probs=309.1

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG   82 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~   82 (456)
                      ++|.+.+.+|..+.. +++|++|++++|.+....+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+++
T Consensus       148 s~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        148 SNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             cCCcccccCChHHhc-CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            345555556666655 6666666666665443333455666666666666666655556666666666666666666654


Q ss_pred             ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCc
Q 048657           83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF  162 (456)
Q Consensus        83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  162 (456)
                      .++. .+.++++|++|++++|.+.+ ..+..+..+++|+.|++++|.+....+..   +....+|+.|++..+ .....+
T Consensus       227 ~~p~-~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n-~l~~~~  300 (968)
T PLN00113        227 EIPY-EIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDN-SLSGEI  300 (968)
T ss_pred             cCCh-hHhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCCeeeccCchh---HhhccCcCEEECcCC-eeccCC
Confidence            4444 55566666666666665542 23344555666666666666554322211   123346666666433 233345


Q ss_pred             hHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhcc
Q 048657          163 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV  242 (456)
Q Consensus       163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  242 (456)
                      +..+..+++|+.|++++|.+.+..+.. +..+++|+.|++.+|.+....+..++.+++|+.|++++|.+.+..|..+.. 
T Consensus       301 p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-  378 (968)
T PLN00113        301 PELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-  378 (968)
T ss_pred             ChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-
Confidence            556666667777777766665555544 355667777777777666666666666777777777777766555555443 


Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +++++.+++..|.+.+.+|..+..+++|+.|++++|.+.+..+..+ ..+++|+.+++++|.+.+..+..+..+++|+.|
T Consensus       379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  457 (968)
T PLN00113        379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQML  457 (968)
T ss_pred             cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH-hcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence            5677777777777777777777778888888888887775555543 367788888888888777666666678888888


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++++|.+.+..|..+ ..++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus       458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  536 (968)
T PLN00113        458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS  536 (968)
T ss_pred             ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence            888888876666544 4578999999999998888888999999999999999999888999999999999999999999


Q ss_pred             CCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657          403 GSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       403 ~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      +..+..+. +++|+.|++++|++.+.+|.. +..+++|+.|++++|++.+.+|+
T Consensus       537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKN-LGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ccCChhHhCcccCCEEECCCCcccccCChh-HhcCcccCEEeccCCcceeeCCC
Confidence            88887765 689999999999998888877 78899999999999999999985

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.2e-44  Score=375.29  Aligned_cols=440  Identities=31%  Similarity=0.431  Sum_probs=239.8

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCC-CcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSS-RILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      ++|.+++.++..++. +++|++|+|++|.+. .++.+.+..+++|++|++++|.+.+..|.  ..+++|++|++++|.++
T Consensus        77 ~~~~i~~~~~~~~~~-l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~  153 (968)
T PLN00113         77 SGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS  153 (968)
T ss_pred             cCCCccccCChHHhC-CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc
Confidence            456667777777777 777777777777754 45544445667777777776666544333  23455666666666555


Q ss_pred             cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCC
Q 048657           82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT  161 (456)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  161 (456)
                      +.++. .+.++++|++|++++|.+.. ..+..+..+++|+.|++++|.+.......   +....+|+.+++..+. ....
T Consensus       154 ~~~p~-~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~-l~~~  227 (968)
T PLN00113        154 GEIPN-DIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRE---LGQMKSLKWIYLGYNN-LSGE  227 (968)
T ss_pred             ccCCh-HHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChH---HcCcCCccEEECcCCc-cCCc
Confidence            44443 45555666666666555442 22334455555555555555543322211   1223345555553222 2223


Q ss_pred             chHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhc
Q 048657          162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD  241 (456)
Q Consensus       162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  241 (456)
                      ++..+..+++|+.|++++|.+.+..+.. +..+++|+.|.+.+|.+....+..+..+++|++|++++|.+.+.+|..+..
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            4444455555555555555444443333 234445555555555444444444444445555555544444333333322


Q ss_pred             -----------------------cCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEE
Q 048657          242 -----------------------VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL  298 (456)
Q Consensus       242 -----------------------~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  298 (456)
                                             .+++|+.++++.|.+.+.+|..+..+++|+.|++++|.+.+.++..+. .+++|+.+
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L  385 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKL  385 (968)
T ss_pred             CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEE
Confidence                                   144444444444444444444444444455555544444433333322 34445555


Q ss_pred             EccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCccc
Q 048657          299 ALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE  378 (456)
Q Consensus       299 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  378 (456)
                      ++.+|.+.+..+..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~  465 (968)
T PLN00113        386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF  465 (968)
T ss_pred             ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence            55555554444444555556666666666655555555556666666666666665555555555666666666666665


Q ss_pred             ccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657          379 GLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       379 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      +..|..+ ..++|+.|++++|++++..+..+. .++|++|++++|.+.+.+|.. +.++++|+.|++++|.+++.+|+
T Consensus       466 ~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~  541 (968)
T PLN00113        466 GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPA  541 (968)
T ss_pred             eecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH-HcCccCCCEEECCCCcccccCCh
Confidence            5444433 335666666666666655554443 557777777777777666665 67778888888888888877774

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-36  Score=271.23  Aligned_cols=373  Identities=23%  Similarity=0.241  Sum_probs=265.0

Q ss_pred             cEEeccCCCCCCcccccccCC--CCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657           23 KYLSLSDSNSSRILDRGLCSL--VHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML  100 (456)
Q Consensus        23 ~~L~L~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l  100 (456)
                      +.|+.++..+..+.-..+..+  +.-+.|++++|++.+..+..|.++++|+.+++.+|.++ .||. ......+|+.|++
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L  132 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDL  132 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEee
Confidence            445555555544433333322  33455777777777667777777777777777777777 6665 3333445777777


Q ss_pred             CCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCc
Q 048657          101 SNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI  180 (456)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  180 (456)
                      .+|.|. .+..+.+..++.|+.++++.|.+.                                                 
T Consensus       133 ~~N~I~-sv~se~L~~l~alrslDLSrN~is-------------------------------------------------  162 (873)
T KOG4194|consen  133 RHNLIS-SVTSEELSALPALRSLDLSRNLIS-------------------------------------------------  162 (873)
T ss_pred             eccccc-cccHHHHHhHhhhhhhhhhhchhh-------------------------------------------------
Confidence            777665 334444555555555555555443                                                 


Q ss_pred             ccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCc
Q 048657          181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI  260 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  260 (456)
                          +++.-.+..-.++++|++..|.++..-...|.++.+|..|.+++|.++ .+|...+..+++|+.|++..|.+...-
T Consensus       163 ----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  163 ----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             ----cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh
Confidence                222222223334555555555555544555666667777788888777 677777777788888888877765333


Q ss_pred             cccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCC
Q 048657          261 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC  340 (456)
Q Consensus       261 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  340 (456)
                      .-.|.++++|+.|.+..|++. .+....+..+.++++|++..|++......++.++.+|+.|+++.|.+....+..+..+
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            456778888888888888887 6666666678889999999988888888888888889999999998887777788888


Q ss_pred             CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc----ccccccE
Q 048657          341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF----HPLSIKQ  416 (456)
Q Consensus       341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~~~L~~  416 (456)
                      ++|++|++++|++++.-++.|..+..|++|+|+.|.+.......|..+++|++|+|+.|.+...+....    .+++|..
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            899999999998887777788888889999999998887777788888899999999888764443322    1678889


Q ss_pred             EEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657          417 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       417 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                      |++.||++ +.++..+|.++++|++|||.+|.|-+..|
T Consensus       397 L~l~gNql-k~I~krAfsgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  397 LRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             eeecCcee-eecchhhhccCcccceecCCCCcceeecc
Confidence            99999988 68888888889999999999988875544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-36  Score=268.94  Aligned_cols=364  Identities=23%  Similarity=0.248  Sum_probs=230.8

Q ss_pred             ccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcC
Q 048657           22 LKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS  101 (456)
Q Consensus        22 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~  101 (456)
                      .+.|++++|.+.++....|.++++|+++++.+|.++ ..|.......+|+.|++.+|.|+ .+....+..++.|+.|+++
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence            444566655555555555556666666666555555 44444444455556666655555 3433345555555666666


Q ss_pred             CceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCch-HHhhcCCCccEEEecCc
Q 048657          102 NNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFP-KFLYHQHDLEYVDLSHI  180 (456)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~  180 (456)
                      .|.++ .+....+..-.++++|++++|++++.....+..+.   +|-.+.+..+.  ...+| ..++.+++|+.|++..|
T Consensus       158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln---sL~tlkLsrNr--ittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN---SLLTLKLSRNR--ITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hchhh-cccCCCCCCCCCceEEeeccccccccccccccccc---hheeeecccCc--ccccCHHHhhhcchhhhhhcccc
Confidence            55554 33334444445555666655555443322222111   22222221111  11233 34455788888888887


Q ss_pred             ccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCc
Q 048657          181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI  260 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  260 (456)
                      .+. ...-..+.++++|+.+.+..|.+...-...|..+.++++|++..|++. .+.....-+++.|+.|+++.|.+...-
T Consensus       232 ~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih  309 (873)
T KOG4194|consen  232 RIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIH  309 (873)
T ss_pred             cee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheee
Confidence            763 222223577788888888888777766677777788888888887776 333333334778888888888777666


Q ss_pred             cccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccc---cccccc
Q 048657          261 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG---EIPQSL  337 (456)
Q Consensus       261 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~  337 (456)
                      +++++.+++|++|+++.|.++ .++...+..+..|++|++++|++.......|..+++|++|++..|.+..   +....|
T Consensus       310 ~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f  388 (873)
T KOG4194|consen  310 IDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF  388 (873)
T ss_pred             cchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence            777777888888888888877 7776666677778888888888777777777777888888888877643   234456


Q ss_pred             cCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCc
Q 048657          338 SKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS  397 (456)
Q Consensus       338 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  397 (456)
                      ..+++|+.|.+.+|++..+.-.+|.++.+|++|+|.+|.+-.+.+.+|..+ .|++|.+.
T Consensus       389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            677888888888887775556677788888888888888777777777777 77776553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.5e-31  Score=243.28  Aligned_cols=367  Identities=25%  Similarity=0.337  Sum_probs=308.6

Q ss_pred             CCCccEEeccCCCCC-CcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccE
Q 048657           19 MPSLKYLSLSDSNSS-RILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE   97 (456)
Q Consensus        19 ~~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~   97 (456)
                      +|.+|-+|+++|.+. .-.+.....+..++.|.|...++. ..|+.++.+.+|++|.+++|+++ .+-. .+..++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhhHH
Confidence            678899999999954 444467888999999999999998 88999999999999999999988 3433 5888999999


Q ss_pred             EEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEe
Q 048657           98 LMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDL  177 (456)
Q Consensus        98 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l  177 (456)
                      +.+++|.+.....+..+.++..|+.+++++|++.                             ..|..+....++-.|++
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-----------------------------EvP~~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-----------------------------EVPTNLEYAKNSIVLNL  133 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-----------------------------hcchhhhhhcCcEEEEc
Confidence            9999999987777888999999999999999886                             56777788889999999


Q ss_pred             cCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccC
Q 048657          178 SHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALD  257 (456)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  257 (456)
                      ++|++. .+|..++.++..|-.|++++|.+.. ++..+..+..|++|++++|.+. .+.......+++|+.|.+++.+-+
T Consensus       134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT  210 (1255)
T ss_pred             ccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch
Confidence            999885 7888888899999999999988664 5556788889999999998765 332222223667888888876543


Q ss_pred             -CCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccc
Q 048657          258 -GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQS  336 (456)
Q Consensus       258 -~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  336 (456)
                       ..+|.++..+.+|..++++.|++. ..|..++ .+++|+.|++++|.+++.. ...+...+|++|++++|+++ .+|.+
T Consensus       211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt-~LP~a  286 (1255)
T KOG0444|consen  211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLT-VLPDA  286 (1255)
T ss_pred             hhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhc-cchHH
Confidence             468889999999999999999987 7777765 7899999999999998644 33456789999999999998 89999


Q ss_pred             ccCCCCCcEEEcCCCcCc-cccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccccccccc
Q 048657          337 LSKCSSLEGLHLNNNSLS-GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIK  415 (456)
Q Consensus       337 ~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~  415 (456)
                      ++.++.|+.|.+.+|+++ +-+|..++.+..|+.+...+|.+. ..|..++.|++|++|.++.|++...+..+...+-|+
T Consensus       287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLK  365 (1255)
T ss_pred             HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcc
Confidence            999999999999999876 458899999999999999999886 778999999999999999999875555444578999


Q ss_pred             EEEccCcccC
Q 048657          416 QVHLSKNMLH  425 (456)
Q Consensus       416 ~l~l~~~~~~  425 (456)
                      .||++.|.-.
T Consensus       366 vLDlreNpnL  375 (1255)
T KOG0444|consen  366 VLDLRENPNL  375 (1255)
T ss_pred             eeeccCCcCc
Confidence            9999988764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=8.9e-32  Score=232.06  Aligned_cols=413  Identities=25%  Similarity=0.302  Sum_probs=303.0

Q ss_pred             hHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCC
Q 048657           13 QIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL   92 (456)
Q Consensus        13 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l   92 (456)
                      +++.. +..|.+|++.+|....+++ ++..+..++.++.+.++++ .+|+.+..+.+|+.++.++|.+. .+++ .+..+
T Consensus        62 ~dl~n-L~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~-~i~~~  136 (565)
T KOG0472|consen   62 EDLKN-LACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPD-SIGRL  136 (565)
T ss_pred             Hhhhc-ccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCc-hHHHH
Confidence            45666 8889999999999888885 7888889999999999988 88999999999999999999888 7776 78888


Q ss_pred             CCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCc
Q 048657           93 TSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDL  172 (456)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L  172 (456)
                      -.|+.++..+|++.  ..+..+..+.++..+++.+|.+....+..    ..+..+++++.  +...-..+|..++.+..|
T Consensus       137 ~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~----i~m~~L~~ld~--~~N~L~tlP~~lg~l~~L  208 (565)
T KOG0472|consen  137 LDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENH----IAMKRLKHLDC--NSNLLETLPPELGGLESL  208 (565)
T ss_pred             hhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHH----HHHHHHHhccc--chhhhhcCChhhcchhhh
Confidence            88999999888876  45567778888888888888775332221    22334454443  344556788888888888


Q ss_pred             cEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEcc
Q 048657          173 EYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNS  252 (456)
Q Consensus       173 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~  252 (456)
                      +.|++.+|.+. ..|+  +.+|..|.++.+..+++..........++++..||+..|++. .+|..+-- +.+|.+++++
T Consensus       209 ~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlS  283 (565)
T KOG0472|consen  209 ELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLS  283 (565)
T ss_pred             HHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhccc
Confidence            88898888875 5553  478888888888888776655555667888888888888887 66665543 6788888888


Q ss_pred             CCccCCCccccccCCCCCcEEeccCCcCCCcccchhh-----------------------------------------cC
Q 048657          253 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA-----------------------------------------VG  291 (456)
Q Consensus       253 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-----------------------------------------~~  291 (456)
                      +|.++ .+|..++++ .|+.|.+.+|.+. .+...+.                                         ..
T Consensus       284 NN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~  360 (565)
T KOG0472|consen  284 NNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA  360 (565)
T ss_pred             CCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence            88877 567778887 7888887777543 1111110                                         01


Q ss_pred             CCcccEEEccCCcccccccccccc--cccccEEEccCcccc-----------------------ccccccccCCCCCcEE
Q 048657          292 CVNLESLALSNNNLEGHMFSRNFN--LANLKLLQLEGNRFV-----------------------GEIPQSLSKCSSLEGL  346 (456)
Q Consensus       292 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~-----------------------~~~~~~~~~l~~L~~L  346 (456)
                      ..+.+.|++++-+++..+...|..  -.-...+++++|++.                       +-.+..++++++|..|
T Consensus       361 ~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L  440 (565)
T KOG0472|consen  361 IITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFL  440 (565)
T ss_pred             hhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceee
Confidence            123455555555555433322211  111344555555432                       1344556677889999


Q ss_pred             EcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc-ccccccEEEccCcccC
Q 048657          347 HLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF-HPLSIKQVHLSKNMLH  425 (456)
Q Consensus       347 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~l~l~~~~~~  425 (456)
                      ++++|-+. .+|..++.+..|+.|+++.|.|. ..|.++...-.++.+-.++|++....+..+ .++.|+.||+.+|.+.
T Consensus       441 ~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq  518 (565)
T KOG0472|consen  441 DLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ  518 (565)
T ss_pred             ecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence            99988776 78888888888999999999887 456776666678888888888887777633 4789999999999996


Q ss_pred             CCCCcccccCCCcceEEEccCcccC
Q 048657          426 GQLKRGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       426 ~~~~~~~~~~~~~L~~L~l~~~~l~  450 (456)
                       .+|+. +++|.+|++|++++|++.
T Consensus       519 -~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  519 -QIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -hCChh-hccccceeEEEecCCccC
Confidence             78888 999999999999999987

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=5.1e-29  Score=226.85  Aligned_cols=369  Identities=25%  Similarity=0.335  Sum_probs=296.3

Q ss_pred             cCCCCCcEEEcccCccc-ccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCccccccc
Q 048657           41 CSLVHLQELYIDNNDLR-GSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSR  119 (456)
Q Consensus        41 ~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  119 (456)
                      +-++-.+-+++++|.++ +.+|..+..++.++.|.+..+++. .+|+ .+..+.+|++|.+++|++.  ...+.+..++.
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~   79 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLI--SVHGELSDLPR   79 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhH--hhhhhhccchh
Confidence            44667788999999997 678999999999999999999998 8887 8999999999999999876  44467778899


Q ss_pred             ceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhcccccee
Q 048657          120 LKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQ  199 (456)
Q Consensus       120 L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  199 (456)
                      ||.+.++.|.+..                           ..+|..+..+..|..||+++|.+. +.|..+ ..-.++..
T Consensus        80 LRsv~~R~N~LKn---------------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iV  130 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKN---------------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIV  130 (1255)
T ss_pred             hHHHhhhcccccc---------------------------CCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEE
Confidence            9999888877642                           256778888999999999999886 556543 56677888


Q ss_pred             eeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCc
Q 048657          200 LSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH  279 (456)
Q Consensus       200 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (456)
                      |++++|.+..+....+.++..|-.|++++|.+. .+|...-. +..|+.|.+++|++.-.-...+..+++|+.|.+++++
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence            999999888777777788888889999999886 66666554 7788999999988764444455567777788888774


Q ss_pred             CC-CcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccC
Q 048657          280 LT-GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIP  358 (456)
Q Consensus       280 l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  358 (456)
                      -+ ..+|..+- .+.+|..++++.|.+.. .+..+..+++|+.|++++|.++ .+........+|++|+++.|+++ .+|
T Consensus       209 RTl~N~Ptsld-~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP  284 (1255)
T KOG0444|consen  209 RTLDNIPTSLD-DLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLP  284 (1255)
T ss_pred             chhhcCCCchh-hhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cch
Confidence            22 25555543 67888999999998875 4455667889999999999988 66666677788999999999998 889


Q ss_pred             ccccCCCCCcEEEcCCCcccc-cCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCC
Q 048657          359 RWLGNLTWLQYIIMPNNHLEG-LIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCS  437 (456)
Q Consensus       359 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  437 (456)
                      .++..+++|+.|.+.+|+++- -+|..++.+..|+.+...+|.+.-.+...-.+..|+.|.|+.|.+. ++|.+ +.-++
T Consensus       285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPea-IHlL~  362 (1255)
T KOG0444|consen  285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEA-IHLLP  362 (1255)
T ss_pred             HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhh-hhhcC
Confidence            999999999999999998753 3578888899999999999988755444445889999999999997 67777 78889


Q ss_pred             cceEEEccCcccC
Q 048657          438 SLVTLDLSYNRLN  450 (456)
Q Consensus       438 ~L~~L~l~~~~l~  450 (456)
                      .|+.||+..|+-.
T Consensus       363 ~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  363 DLKVLDLRENPNL  375 (1255)
T ss_pred             CcceeeccCCcCc
Confidence            9999999999755

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.93  E-value=5e-29  Score=215.15  Aligned_cols=398  Identities=22%  Similarity=0.313  Sum_probs=257.7

Q ss_pred             hhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCC
Q 048657           10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL   89 (456)
Q Consensus        10 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~   89 (456)
                      ++|+++.. .+.++.++.+.+.+..++ +.++.+-.++.++..+|+++ .+|.++.++.+|..+++.+|.++ .++++.+
T Consensus       105 ~lp~~i~s-~~~l~~l~~s~n~~~el~-~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i  180 (565)
T KOG0472|consen  105 ELPEQIGS-LISLVKLDCSSNELKELP-DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI  180 (565)
T ss_pred             hccHHHhh-hhhhhhhhccccceeecC-chHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH
Confidence            45556665 666666666666665555 35666666666666666666 66666666667777777777766 5555333


Q ss_pred             cCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHH-hhc
Q 048657           90 VHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKF-LYH  168 (456)
Q Consensus        90 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-l~~  168 (456)
                       +++.|++|+...|.+.  ..+..++.+.+|..+++..|.+..     ..++..+..++.++++.+...+  +++. .+.
T Consensus       181 -~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~-----lPef~gcs~L~Elh~g~N~i~~--lpae~~~~  250 (565)
T KOG0472|consen  181 -AMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRF-----LPEFPGCSLLKELHVGENQIEM--LPAEHLKH  250 (565)
T ss_pred             -HHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhccccc-----CCCCCccHHHHHHHhcccHHHh--hHHHHhcc
Confidence             3677777776666654  444566777777777777776642     2244556666666664443322  2333 336


Q ss_pred             CCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhc-----cC
Q 048657          169 QHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD-----VL  243 (456)
Q Consensus       169 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~  243 (456)
                      ++.+..||+..|++. +.|+.. .-+.+|++|+++++.+++ .+..++++ .|+.|.+.||.+. .+-.++..     .+
T Consensus       251 L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vL  325 (565)
T KOG0472|consen  251 LNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVL  325 (565)
T ss_pred             cccceeeeccccccc-cCchHH-HHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHH
Confidence            777888888888776 455443 456677888888877664 44566777 7777777776543 11100000     00


Q ss_pred             CcceEE----EccCC---ccC-CCcc----ccccCCCCCcEEeccCCcCCCcccchhhcCCC--cccEEEccCCccc---
Q 048657          244 PSLYVF----NNSMN---ALD-GSIP----SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV--NLESLALSNNNLE---  306 (456)
Q Consensus       244 ~~L~~l----~l~~~---~~~-~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~--~L~~L~l~~~~~~---  306 (456)
                      ..|+.-    -++..   .-+ +..+    .......+.+.|++++-+++ .+|..++....  -....+++.|++.   
T Consensus       326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elP  404 (565)
T KOG0472|consen  326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELP  404 (565)
T ss_pred             HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhh
Confidence            111110    00000   000 0000    01122334455555555555 55554432211  1445555555433   


Q ss_pred             --------------------ccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCC
Q 048657          307 --------------------GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW  366 (456)
Q Consensus       307 --------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  366 (456)
                                          +.++..++.+++|..|++++|.+. .+|..+..+..|+.|+++.|.+. .+|++......
T Consensus       405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~  482 (565)
T KOG0472|consen  405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT  482 (565)
T ss_pred             hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence                                234455567899999999999987 78999999999999999999887 89999999999


Q ss_pred             CcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657          367 LQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG  431 (456)
Q Consensus       367 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  431 (456)
                      ++.+-.++|++..+.+..+.++.+|++|++.+|.+..+++....+.+|+.|++.||.+-  .|..
T Consensus       483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             HHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC--CCHH
Confidence            99999999999988888899999999999999999988887777999999999999994  5554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=2.2e-28  Score=231.84  Aligned_cols=405  Identities=26%  Similarity=0.260  Sum_probs=257.1

Q ss_pred             hHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCC
Q 048657           13 QIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL   92 (456)
Q Consensus        13 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l   92 (456)
                      -++.+++.+|+.|+|++|.+.+.|. .+..+++|+.|.++.|.+. ..|.+..++.+|+++.+..|.+. ..|. .+..+
T Consensus        38 l~~~~~~v~L~~l~lsnn~~~~fp~-~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~l  113 (1081)
T KOG0618|consen   38 LEFVEKRVKLKSLDLSNNQISSFPI-QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISEL  113 (1081)
T ss_pred             hHHhhheeeeEEeeccccccccCCc-hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCch-hHHhh
Confidence            4555557779999999998888884 7888999999999999887 77788888899999999999887 6665 78888


Q ss_pred             CCccEEEcCCceeeeccCCCcccccccceEEeccCc-------------------ccccccccCcCCCCCccccce-eec
Q 048657           93 TSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENN-------------------QINAEITQSHSLIPPKFQLSR-LSL  152 (456)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~-------------------~~~~~~~~~~~~~~~~~~L~~-l~l  152 (456)
                      ++|++|+++.|.+.  ..+..+..+..+.++..++|                   .+.......      ...+++ +++
T Consensus       114 knl~~LdlS~N~f~--~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~------i~~l~~~ldL  185 (1081)
T KOG0618|consen  114 KNLQYLDLSFNHFG--PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID------IYNLTHQLDL  185 (1081)
T ss_pred             hcccccccchhccC--CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc------hhhhheeeec
Confidence            99999999988876  12223334444444444444                   222111111      011222 333


Q ss_pred             cCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccC
Q 048657          153 SSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFR  232 (456)
Q Consensus       153 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  232 (456)
                      ......    ...+..+++|+.+....+.+...     -..-++++.|....|.++....  -....+|+.++++.+++.
T Consensus       186 r~N~~~----~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~  254 (1081)
T KOG0618|consen  186 RYNEME----VLDLSNLANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS  254 (1081)
T ss_pred             ccchhh----hhhhhhccchhhhhhhhcccceE-----EecCcchheeeeccCcceeecc--ccccccceeeecchhhhh
Confidence            222111    12233444444444444433210     1123445555555555542111  123356677777777766


Q ss_pred             CCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccc-
Q 048657          233 GHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFS-  311 (456)
Q Consensus       233 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-  311 (456)
                       .+|.++.. +.++..++...|.+. .+|..+...++|+.+.+..|.+. .++... ....+|++|++..|.+...... 
T Consensus       255 -~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l-e~~~sL~tLdL~~N~L~~lp~~~  329 (1081)
T KOG0618|consen  255 -NLPEWIGA-CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL-EGLKSLRTLDLQSNNLPSLPDNF  329 (1081)
T ss_pred             -cchHHHHh-cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc-cccceeeeeeehhccccccchHH
Confidence             56644444 667777777776664 45555555556666666655554 444332 2355566666666555432221 


Q ss_pred             ------------------------cccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCC
Q 048657          312 ------------------------RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWL  367 (456)
Q Consensus       312 ------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  367 (456)
                                              .-..++.|+.|.+.+|.+++.....+.+.+.|+.|++++|++.......+.++..|
T Consensus       330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L  409 (1081)
T KOG0618|consen  330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL  409 (1081)
T ss_pred             HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh
Confidence                                    11135567788888888877666677788888888888888874444567778888


Q ss_pred             cEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCc
Q 048657          368 QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN  447 (456)
Q Consensus       368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  447 (456)
                      ++|+++||+++ .+|..+..++.|++|...+|.+... |.....++|+.+|++.|++.......... -|+|++||+++|
T Consensus       410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-PELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGN  486 (1081)
T ss_pred             HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-hhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCC
Confidence            88888888887 4467788888888888888888744 46667889999999999885433333222 278999999998


Q ss_pred             c
Q 048657          448 R  448 (456)
Q Consensus       448 ~  448 (456)
                      .
T Consensus       487 ~  487 (1081)
T KOG0618|consen  487 T  487 (1081)
T ss_pred             c
Confidence            6

>PLN03210 Resistant to P

Probab=99.91  E-value=1.1e-22  Score=213.76  Aligned_cols=344  Identities=18%  Similarity=0.176  Sum_probs=237.2

Q ss_pred             cccccccCCCCCcEEEcccCc------ccccchhhhhcCC-CCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeee
Q 048657           35 ILDRGLCSLVHLQELYIDNND------LRGSLPWCLANMT-SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI  107 (456)
Q Consensus        35 ~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~  107 (456)
                      +...+|.++++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.++ .+|. .+ ...+|++|+++++++. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccc-
Confidence            444578888889988886543      2234566666664 5888988888877 7776 33 5678888888888765 


Q ss_pred             ccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccc
Q 048657          108 PISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFP  187 (456)
Q Consensus       108 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  187 (456)
                       ..+..+..+++|+.++++++...                            ..++ .+..+++|+.|++++|.....+|
T Consensus       625 -~L~~~~~~l~~Lk~L~Ls~~~~l----------------------------~~ip-~ls~l~~Le~L~L~~c~~L~~lp  674 (1153)
T PLN03210        625 -KLWDGVHSLTGLRNIDLRGSKNL----------------------------KEIP-DLSMATNLETLKLSDCSSLVELP  674 (1153)
T ss_pred             -ccccccccCCCCCEEECCCCCCc----------------------------CcCC-ccccCCcccEEEecCCCCccccc
Confidence             23344566778888888765321                            0111 24567899999999987655666


Q ss_pred             hhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCC
Q 048657          188 TWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNM  267 (456)
Q Consensus       188 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~  267 (456)
                      .. ...+++|+.|++.+|.....++..+ .+++|+.|++++|.....+|.    ..++|+.+++..+.+. .+|..+ .+
T Consensus       675 ~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l  746 (1153)
T PLN03210        675 SS-IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RL  746 (1153)
T ss_pred             hh-hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cc
Confidence            55 4678899999999887665555544 678899999988864434443    2468888898888765 455444 57


Q ss_pred             CCCcEEeccCCcCCC------cccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCC
Q 048657          268 KFLQILDLSNNHLTG------EIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCS  341 (456)
Q Consensus       268 ~~L~~L~l~~~~l~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  341 (456)
                      ++|++|.+.++....      ..+......+++|+.|++++|......+..+..+++|+.|++++|.....+|... +++
T Consensus       747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~  825 (1153)
T PLN03210        747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE  825 (1153)
T ss_pred             cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence            788888887643210      1111122235688888888887666667777888889999998876544566554 688


Q ss_pred             CCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCc-cCCCCCcccccccccEEEcc
Q 048657          342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNN-ISGSLPACFHPLSIKQVHLS  420 (456)
Q Consensus       342 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~l~l~  420 (456)
                      +|+.|++++|......|..   .++|+.|++++|.+. ..|.++..+++|+.|++++|+ +...+......++|+.++++
T Consensus       826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~  901 (1153)
T PLN03210        826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS  901 (1153)
T ss_pred             ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence            8889999888644344432   367888889888887 456778888889999998864 45444433446788888888


Q ss_pred             CcccC
Q 048657          421 KNMLH  425 (456)
Q Consensus       421 ~~~~~  425 (456)
                      +|.-.
T Consensus       902 ~C~~L  906 (1153)
T PLN03210        902 DCGAL  906 (1153)
T ss_pred             CCccc
Confidence            88654

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.90  E-value=8.1e-26  Score=214.65  Aligned_cols=427  Identities=28%  Similarity=0.342  Sum_probs=289.8

Q ss_pred             ccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccccc
Q 048657            5 IALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSI   84 (456)
Q Consensus         5 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~   84 (456)
                      |...+.+|..+-. +++|+.|+++.|.+...+ ....++.+|+++.|.+|.+. .+|..+..+++|++|++++|.+. .+
T Consensus        54 nn~~~~fp~~it~-l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~  129 (1081)
T KOG0618|consen   54 NNQISSFPIQITL-LSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PI  129 (1081)
T ss_pred             ccccccCCchhhh-HHHHhhcccchhhHhhCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CC
Confidence            3445678888888 999999999999998888 47889999999999999888 89999999999999999999887 77


Q ss_pred             CCCCCcCCCCccEEEcCCce-ee--e------------ccCCCcccccccceE-EeccCccccccccc--CcCCCCC--c
Q 048657           85 SSSPLVHLTSIEELMLSNNH-FQ--I------------PISLEPFFNHSRLKF-FYAENNQINAEITQ--SHSLIPP--K  144 (456)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~~~-~~--~------------~~~~~~~~~~~~L~~-l~l~~~~~~~~~~~--~~~~~~~--~  144 (456)
                      |. .+..+..++.+..++|. +.  +            ............+++ +++++|.+......  ..-....  .
T Consensus       130 Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~r  208 (1081)
T KOG0618|consen  130 PL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCER  208 (1081)
T ss_pred             ch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhh
Confidence            76 56666666666666551 00  0            000011112233444 78887776511100  0000011  1


Q ss_pred             cccceeeccCCCCCCC-----CchH--HhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccC
Q 048657          145 FQLSRLSLSSGYEDGV-----TFPK--FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHS  217 (456)
Q Consensus       145 ~~L~~l~l~~~~~~~~-----~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  217 (456)
                      ..+..+.+.+......     .+..  .-....+|+.++++++.+. .+|+| ...|.+++.+.+..|.+. .++..+..
T Consensus       209 n~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l~-~lp~ri~~  285 (1081)
T KOG0618|consen  209 NQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNANHNRLV-ALPLRISR  285 (1081)
T ss_pred             cccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHH-HHhcccceEecccchhHH-hhHHHHhh
Confidence            1222222211110000     0000  0112346777777777665 45554 367777777777777663 34444555


Q ss_pred             CccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccc-cCCCC-CcEEeccCCcCCCcccchhhcCCCcc
Q 048657          218 HKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSF-GNMKF-LQILDLSNNHLTGEIPEHLAVGCVNL  295 (456)
Q Consensus       218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~~-L~~L~l~~~~l~~~~~~~~~~~~~~L  295 (456)
                      ..+|+.+.+..|++. .+|.... .+.+|+.|++..|.+. .+|+.+ ..... +..|+.+.+.+. ..+..-....+.|
T Consensus       286 ~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~L  361 (1081)
T KOG0618|consen  286 ITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAAL  361 (1081)
T ss_pred             hhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHH
Confidence            667777777777765 3443333 2667777877777765 333322 22222 445555555554 4443333346678


Q ss_pred             cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657          296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN  375 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  375 (456)
                      +.|.+.+|.+++.....+.++++|+.|+++.|++....+..+.+++.|++|++++|.++ .+|+.+..+..|++|..-+|
T Consensus       362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCC
Confidence            99999999999988888899999999999999998445566789999999999999998 88899999999999999999


Q ss_pred             cccccCchhccCCCCCCeEeCcCCccCCCCCccccc-ccccEEEccCcccCCCCCcccccCCCcceEEEccCc
Q 048657          376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHP-LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN  447 (456)
Q Consensus       376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  447 (456)
                      .+. ..| .+..++.|+.+|++.|.++........+ ++|++||++||.-. .+....|..+.++...+++=+
T Consensus       441 ~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  441 QLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence            997 445 7889999999999999998766555556 89999999999852 556665666677766666644

>PLN03210 Resistant to P

Probab=99.90  E-value=1.4e-21  Score=205.43  Aligned_cols=338  Identities=20%  Similarity=0.179  Sum_probs=169.8

Q ss_pred             hHHhhcCCCccEEeccCCCCC-------CcccccccCC-CCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccccc
Q 048657           13 QIIGESMPSLKYLSLSDSNSS-------RILDRGLCSL-VHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSI   84 (456)
Q Consensus        13 ~~~~~~~~~L~~L~L~~~~~~-------~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~   84 (456)
                      ..|.+ |++|+.|.+..+...       .++ +.|..+ ++|+.|.+.++.+. .+|..+ ...+|+.|+++++.+. .+
T Consensus       552 ~aF~~-m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L  626 (1153)
T PLN03210        552 NAFKG-MRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL  626 (1153)
T ss_pred             HHHhc-CccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence            44666 999999998654321       233 355555 45999999998887 667766 4689999999999988 67


Q ss_pred             CCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchH
Q 048657           85 SSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPK  164 (456)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  164 (456)
                      +. .+..+++|++|+++++......+  .+..+++|+.|++++|......+.   .+....+|+.|++..+. ....+|.
T Consensus       627 ~~-~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~---si~~L~~L~~L~L~~c~-~L~~Lp~  699 (1153)
T PLN03210        627 WD-GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPS---SIQYLNKLEDLDMSRCE-NLEILPT  699 (1153)
T ss_pred             cc-ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccch---hhhccCCCCEEeCCCCC-CcCccCC
Confidence            66 67789999999999875432232  466788999999988753211111   11222344444443221 1112222


Q ss_pred             HhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCC------CCchh
Q 048657          165 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRG------HIPVE  238 (456)
Q Consensus       165 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~  238 (456)
                      .+ .+++|+.|++++|.....++.    ...+|+.|++..+.+.. ++..+ .+++|+.|.+.++....      ..+..
T Consensus       700 ~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~  772 (1153)
T PLN03210        700 GI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPL  772 (1153)
T ss_pred             cC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchh
Confidence            22 344555555555433222221    12344445554444332 11111 23444444443321100      00011


Q ss_pred             hhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccccccccc
Q 048657          239 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLAN  318 (456)
Q Consensus       239 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  318 (456)
                      .....++|+.|++++|.....+|.+++++++|+.|++++|...+.+|...  .+++|++|++++|......+.   ...+
T Consensus       773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~n  847 (1153)
T PLN03210        773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD---ISTN  847 (1153)
T ss_pred             hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc---cccc
Confidence            11113345555555554444445555555555555555543222333322  244555555555432221111   1234


Q ss_pred             ccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657          319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN  375 (456)
Q Consensus       319 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  375 (456)
                      |+.|+++++.+. .+|..+..+++|+.|++++|.--..++..+..+++|+.+++++|
T Consensus       848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            455555555444 34444445555555555554322234444444455555555544

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.3e-24  Score=187.53  Aligned_cols=407  Identities=20%  Similarity=0.180  Sum_probs=255.3

Q ss_pred             hhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccC-CccccccCCCC
Q 048657           10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS-NQLTGSISSSP   88 (456)
Q Consensus        10 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~   88 (456)
                      ++|.+++.   .-..+.|..|.|+.+|+++|..+++|++|+|++|.|+.+.|.+|..+++|.+|-+.+ |+|+ .++.+.
T Consensus        60 eVP~~LP~---~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~  135 (498)
T KOG4237|consen   60 EVPANLPP---ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGA  135 (498)
T ss_pred             cCcccCCC---cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhH
Confidence            34444444   677888999999999999999999999999999999999999999999887777666 8899 899889


Q ss_pred             CcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCC-CCCCchHHhh
Q 048657           89 LVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYE-DGVTFPKFLY  167 (456)
Q Consensus        89 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~l~  167 (456)
                      |.++..|+.|.+.-|++. -+..+.+..+++++.|.+-+|.+..+....+   .....++.+.+..+.. .+-.++ ++.
T Consensus       136 F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf---~~l~~i~tlhlA~np~icdCnL~-wla  210 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTF---QGLAAIKTLHLAQNPFICDCNLP-WLA  210 (498)
T ss_pred             hhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccc---cchhccchHhhhcCccccccccc-hhh
Confidence            999999999999888776 3455677888888888888777654332221   2222333333322210 000000 000


Q ss_pred             cCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCcc-CCccccEEeCCCCccCCCCchhhhccCCcc
Q 048657          168 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIH-SHKQLRLLDISTNNFRGHIPVEIGDVLPSL  246 (456)
Q Consensus       168 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  246 (456)
                      ..-.......              ++........+.+..+...-...+. ....+.+--.+.+......|...+..+++|
T Consensus       211 ~~~a~~~iet--------------sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L  276 (498)
T KOG4237|consen  211 DDLAMNPIET--------------SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL  276 (498)
T ss_pred             hHHhhchhhc--------------ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence            0000000000              1111111111111111111111110 011111111222333345566667778899


Q ss_pred             eEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccC
Q 048657          247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEG  326 (456)
Q Consensus       247 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  326 (456)
                      +.+++++|.++..-..+|.....+++|.+..|.+. .+...++.++..|++|++.+|+++...+..|.....|.+|++-.
T Consensus       277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             eEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence            99999999888877888888899999999999887 77777777888999999999999888888888888888888877


Q ss_pred             cccccc-------------c---cccccCCCCCcEEEcCCCcCccc---cCcc---------ccCCCCCcE-EEcCCCcc
Q 048657          327 NRFVGE-------------I---PQSLSKCSSLEGLHLNNNSLSGR---IPRW---------LGNLTWLQY-IIMPNNHL  377 (456)
Q Consensus       327 ~~~~~~-------------~---~~~~~~l~~L~~L~l~~~~~~~~---~~~~---------~~~~~~L~~-L~l~~~~~  377 (456)
                      |++.-.             .   .....+...++.+.+++..+.+.   .|+.         -..|+-+.+ ...++..+
T Consensus       356 Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l  435 (498)
T KOG4237|consen  356 NPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL  435 (498)
T ss_pred             CcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch
Confidence            754210             0   00111234566667766644321   2221         112333332 22222222


Q ss_pred             cccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCc
Q 048657          378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN  447 (456)
Q Consensus       378 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  447 (456)
                      . ..|..+-  ..-+.+++.+|.++..+..  ...++ .+|+++|.+. .+....|.++..|.+|.|++|
T Consensus       436 k-~lp~~iP--~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~-~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  436 K-LLPRGIP--VDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRIS-SLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             h-hcCCCCC--chhHHHhcccchhcccCHH--HHhhh-hcccccCcee-hhhcccccchhhhheeEEecC
Confidence            2 3333221  1456789999999866554  45677 8999999995 788888999999999999986

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=1.9e-22  Score=174.36  Aligned_cols=269  Identities=17%  Similarity=0.150  Sum_probs=194.6

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEccc-CcccccchhhhhcCCCCcEEeccCCccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDN-NDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      ..|+++..-+.+|.. +++||+|||+.|.|..+.+++|.+++.+..|.+.+ |+|++.....|.++..|+.|.+..|.+.
T Consensus        75 dqN~I~~iP~~aF~~-l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen   75 DQNQISSIPPGAFKT-LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             ccCCcccCChhhccc-hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence            467777766677777 99999999999999999999999999999998877 8999777789999999999999999998


Q ss_pred             cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCcc-ccceeeccCCC--C-
Q 048657           82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKF-QLSRLSLSSGY--E-  157 (456)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~--~-  157 (456)
                       -+..+++..+++|..|.+.+|.+. .+....+..+..++.+.+..|.+...-     .+.+.. -+....++-..  . 
T Consensus       154 -Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdC-----nL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  154 -CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDC-----NLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             -chhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccc-----ccchhhhHHhhchhhcccceec
Confidence             777779999999999999999876 444456777788888877766642110     000000 00000000000  0 


Q ss_pred             --------CCCCchHHhh--cCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCC
Q 048657          158 --------DGVTFPKFLY--HQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDIS  227 (456)
Q Consensus       158 --------~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  227 (456)
                              ...+.++.-.  ....+.+--.+.+......|...+..+++|++|++++|+++.+-...|....++++|.+.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                    0000000000  001111122234445567777778888999999999999888888888888999999999


Q ss_pred             CCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcC
Q 048657          228 TNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL  280 (456)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  280 (456)
                      .|++. .+....+..+..|+.|++.+|+++...|.+|.....|.+|++-.|.+
T Consensus       307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            88876 66666777788899999999988877888888888888888866543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=9.5e-18  Score=164.46  Aligned_cols=241  Identities=25%  Similarity=0.274  Sum_probs=179.4

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  249 (456)
                      ++++.|++.+|.+.. +|.    ..++|++|+++.|.+.... .   ..++|+.|++.+|.+. .+|.    .+.+|+.|
T Consensus       222 ~~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls~N~L~-~Lp~----lp~~L~~L  287 (788)
T PRK15387        222 AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLT-HLPA----LPSGLCKL  287 (788)
T ss_pred             cCCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCccc-C---cccccceeeccCCchh-hhhh----chhhcCEE
Confidence            368888888887763 442    3578888999888777532 2   2468889999988876 4443    24678889


Q ss_pred             EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657          250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF  329 (456)
Q Consensus       250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  329 (456)
                      ++++|.+. .+|.   ..++|+.|++++|.+. .++.    ...+|+.|.+.+|.+.....    ...+|+.|++++|++
T Consensus       288 ~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~L  354 (788)
T PRK15387        288 WIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQL  354 (788)
T ss_pred             ECcCCccc-cccc---cccccceeECCCCccc-cCCC----CcccccccccccCccccccc----cccccceEecCCCcc
Confidence            99998876 3443   2478999999999887 5554    23568889999998875331    235799999999998


Q ss_pred             cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc
Q 048657          330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF  409 (456)
Q Consensus       330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  409 (456)
                      . .+|..   .++|+.|++++|.+. .+|..   .++|+.|++++|.+... |..   .++|+.|++++|++++.+ .. 
T Consensus       355 s-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~LssIP-~l-  420 (788)
T PRK15387        355 A-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSL-PVL---PSELKELMVSGNRLTSLP-ML-  420 (788)
T ss_pred             C-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCC-CCc---ccCCCEEEccCCcCCCCC-cc-
Confidence            7 45543   357888999999887 45543   35799999999999854 322   358999999999998643 22 


Q ss_pred             ccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657          410 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       410 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                       +.+|+.|++++|++. .+|.. +..+++|+.|++++|++++.+|
T Consensus       421 -~~~L~~L~Ls~NqLt-~LP~s-l~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        421 -PSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             -hhhhhhhhhccCccc-ccChH-HhhccCCCeEECCCCCCCchHH
Confidence             457889999999995 78776 7889999999999999998754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=2.3e-17  Score=161.82  Aligned_cols=58  Identities=31%  Similarity=0.388  Sum_probs=25.2

Q ss_pred             cccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCccccc
Q 048657          318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL  380 (456)
Q Consensus       318 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  380 (456)
                      +|+.|++++|.+. .+|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++.
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            4444444444443 22221   123444444444444 3444444444444444444444433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=5.1e-18  Score=155.76  Aligned_cols=280  Identities=22%  Similarity=0.171  Sum_probs=143.9

Q ss_pred             eeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchh---hhhccccceeeeecccCcCCCCCcCccCCccccEEeC
Q 048657          150 LSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW---LLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDI  226 (456)
Q Consensus       150 l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  226 (456)
                      |++.............+..+++|+.++++++.+.+.....   .....+.++++++..+.+... +..+           
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~~-----------   70 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRGL-----------   70 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chHH-----------
Confidence            3443444444555666667777888888887764322211   122334455555554433210 0000           


Q ss_pred             CCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCC---CCcEEeccCCcCCCcccch---hhcCC-CcccEEE
Q 048657          227 STNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMK---FLQILDLSNNHLTGEIPEH---LAVGC-VNLESLA  299 (456)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~l~~~~~~~---~~~~~-~~L~~L~  299 (456)
                            ..++..+.. +++|+.++++++.+....+..+..+.   +|++|++++|.+.+.....   ....+ ++|+.++
T Consensus        71 ------~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~  143 (319)
T cd00116          71 ------QSLLQGLTK-GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV  143 (319)
T ss_pred             ------HHHHHHHHh-cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence                  001111111 44555555555555433333333333   3666666666554211111   11233 5667777


Q ss_pred             ccCCccccc----ccccccccccccEEEccCcccccc----ccccccCCCCCcEEEcCCCcCccc----cCccccCCCCC
Q 048657          300 LSNNNLEGH----MFSRNFNLANLKLLQLEGNRFVGE----IPQSLSKCSSLEGLHLNNNSLSGR----IPRWLGNLTWL  367 (456)
Q Consensus       300 l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L  367 (456)
                      +++|.++..    ....+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+++.    +...+..+++|
T Consensus       144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L  223 (319)
T cd00116         144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL  223 (319)
T ss_pred             cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence            777666521    222334455677777777766531    223344556777777777766532    23345566777


Q ss_pred             cEEEcCCCcccccCchhcc-----CCCCCCeEeCcCCccCCCCCccc-----ccccccEEEccCcccCCC----CCcccc
Q 048657          368 QYIIMPNNHLEGLIPVEFC-----QLDSLQILDISDNNISGSLPACF-----HPLSIKQVHLSKNMLHGQ----LKRGTF  433 (456)
Q Consensus       368 ~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~l~l~~~~~~~~----~~~~~~  433 (456)
                      ++|++++|.+++.....+.     ..+.|++|++++|.++......+     ..++|+++++++|.+...    +... +
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~-~  302 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES-L  302 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH-H
Confidence            7777777776642222221     23677788887777753221111     135677788887777532    1111 2


Q ss_pred             cCC-CcceEEEccCccc
Q 048657          434 FNC-SSLVTLDLSYNRL  449 (456)
Q Consensus       434 ~~~-~~L~~L~l~~~~l  449 (456)
                      ... +.|+++++.+|++
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         303 LEPGNELESLWVKDDSF  319 (319)
T ss_pred             hhcCCchhhcccCCCCC
Confidence            333 6777888777763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=1.5e-17  Score=152.68  Aligned_cols=259  Identities=20%  Similarity=0.176  Sum_probs=135.8

Q ss_pred             ccccceeeccCCCCCC---CCchHHhhcCCCccEEEecCccccc--ccch---hhhhccccceeeeecccCcCCCCCcCc
Q 048657          144 KFQLSRLSLSSGYEDG---VTFPKFLYHQHDLEYVDLSHIKMNG--EFPT---WLLENNTKLIQLSVVNDSLAGPFRLPI  215 (456)
Q Consensus       144 ~~~L~~l~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l  215 (456)
                      ..+++.+++.......   ..+++.+...+.++.++++++.+..  ....   ..+..+++|++|++++|.+.......+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            3368899997665433   2356667778889999999887652  1111   112334566666665555543222222


Q ss_pred             cCC---ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCC-CCCcEEeccCCcCCCcccch---h
Q 048657          216 HSH---KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNM-KFLQILDLSNNHLTGEIPEH---L  288 (456)
Q Consensus       216 ~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~---~  288 (456)
                      ..+   ++|++|++++|.+.+....                     .+...+..+ ++|+.|++++|.+.+.....   .
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~---------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLR---------------------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHH---------------------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            222   2255555554443311110                     112233344 55666666666554322111   1


Q ss_pred             hcCCCcccEEEccCCcccccc----cccccccccccEEEccCcccccc----ccccccCCCCCcEEEcCCCcCccccCcc
Q 048657          289 AVGCVNLESLALSNNNLEGHM----FSRNFNLANLKLLQLEGNRFVGE----IPQSLSKCSSLEGLHLNNNSLSGRIPRW  360 (456)
Q Consensus       289 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~  360 (456)
                      +..+++|++|++++|.+.+..    ...+...++|+.|++++|.+.+.    ....+..+++|++|++++|.+++.....
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            223455666666666555321    11222345667777766665422    2334456677777777777666422222


Q ss_pred             cc-----CCCCCcEEEcCCCcccc----cCchhccCCCCCCeEeCcCCccCCCCCcccc-----c-ccccEEEccCcc
Q 048657          361 LG-----NLTWLQYIIMPNNHLEG----LIPVEFCQLDSLQILDISDNNISGSLPACFH-----P-LSIKQVHLSKNM  423 (456)
Q Consensus       361 ~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----~-~~L~~l~l~~~~  423 (456)
                      +.     ..+.|++|++++|.++.    .....+..+++|+.+++++|.+.........     . +.++++++.++.
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            21     23677777777777652    1223445556777777777777654322221     2 467777776664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=5.9e-16  Score=152.88  Aligned_cols=248  Identities=20%  Similarity=0.314  Sum_probs=181.1

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  249 (456)
                      .+...|+++++.+. .+|..+   .+.++.|++++|.+.... ..+  .++|+.|++++|.+. .+|..+.   ++|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP-~~l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLP-ENL--QGNIKTLYANSNQLT-SIPATLP---DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCC-hhh--ccCCCEEECCCCccc-cCChhhh---ccccEE
Confidence            45677888887765 445432   346888999888877533 222  358999999999887 6666443   478999


Q ss_pred             EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657          250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF  329 (456)
Q Consensus       250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  329 (456)
                      ++++|.+. .+|..+.  .+|+.|++++|.+. .+|..+   +++|++|++++|.+..... .+  .++|+.|++++|.+
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~L  316 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSL  316 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCcc
Confidence            99999887 5565553  57999999999887 666543   3589999999998876432 22  35788999999988


Q ss_pred             cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc
Q 048657          330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF  409 (456)
Q Consensus       330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  409 (456)
                      . .+|..+  .++|+.|++++|.++ .+|..+.  ++|+.|++++|.++. +|..+  .++|+.|++++|.++..+... 
T Consensus       317 t-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~~l-  386 (754)
T PRK15370        317 T-ALPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPENL-  386 (754)
T ss_pred             c-cCCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCHhH-
Confidence            7 455433  368999999999887 4666553  789999999999874 44444  358999999999998654432 


Q ss_pred             ccccccEEEccCcccCCCCCcc---cccCCCcceEEEccCcccC
Q 048657          410 HPLSIKQVHLSKNMLHGQLKRG---TFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       410 ~~~~L~~l~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l~  450 (456)
                       +.+|+.|++++|++. .+|..   .+..++++..|++.+|+++
T Consensus       387 -~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 -PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             347999999999986 56654   2344588899999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=4.1e-16  Score=154.03  Aligned_cols=121  Identities=24%  Similarity=0.312  Sum_probs=63.6

Q ss_pred             CCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEc
Q 048657          269 FLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHL  348 (456)
Q Consensus       269 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  348 (456)
                      +|+.|++++|.+. .+|...   .++|+.|++++|.++... ..+  +++|+.|++++|.+. .+|..+  .++|+.|++
T Consensus       305 sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdL  374 (754)
T PRK15370        305 GITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDV  374 (754)
T ss_pred             hHHHHHhcCCccc-cCCccc---cccceeccccCCccccCC-hhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEEC
Confidence            3455555555554 333221   245555555555554422 222  245666666666665 344333  246666777


Q ss_pred             CCCcCccccCccccCCCCCcEEEcCCCccccc---CchhccCCCCCCeEeCcCCccC
Q 048657          349 NNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL---IPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++|.++ .+|..+.  .+|+.|++++|++.+.   ++..+...+++..+++.+|++.
T Consensus       375 s~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        375 SRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            766665 4444443  2566677777766532   1222334466677777777665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.48  E-value=1.4e-15  Score=117.18  Aligned_cols=135  Identities=22%  Similarity=0.359  Sum_probs=116.1

Q ss_pred             HhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCC
Q 048657           15 IGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS   94 (456)
Q Consensus        15 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~   94 (456)
                      +.. +.+.++|.|++|.++..++ .++.+++|+.|++.+|+++ .+|..++++++|+.|+++-|++. .+|. .|+.+|-
T Consensus        29 Lf~-~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~  103 (264)
T KOG0617|consen   29 LFN-MSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPA  103 (264)
T ss_pred             ccc-hhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccCCCch
Confidence            445 6788999999999988886 8999999999999999999 89999999999999999999987 6776 8999999


Q ss_pred             ccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccE
Q 048657           95 IEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEY  174 (456)
Q Consensus        95 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~  174 (456)
                      |++|++.+|.+.....++.+..+..|+.+++++|.+.                             .+|..++++.+|+.
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-----------------------------~lp~dvg~lt~lqi  154 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-----------------------------ILPPDVGKLTNLQI  154 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-----------------------------cCChhhhhhcceeE
Confidence            9999999999987788899999999999999988763                             34556667777777


Q ss_pred             EEecCcccc
Q 048657          175 VDLSHIKMN  183 (456)
Q Consensus       175 L~l~~~~~~  183 (456)
                      |.+..+.+.
T Consensus       155 l~lrdndll  163 (264)
T KOG0617|consen  155 LSLRDNDLL  163 (264)
T ss_pred             EeeccCchh
Confidence            777766543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=8.1e-16  Score=118.39  Aligned_cols=153  Identities=27%  Similarity=0.406  Sum_probs=70.7

Q ss_pred             CcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEE
Q 048657          244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQ  323 (456)
Q Consensus       244 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  323 (456)
                      ..+..+.++++.++ .+|..+..+.+|+.|++.++++. ++|..+. .+++|+.|+++-|++.. .+..|+.++.|+.|+
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~~-lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLNI-LPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhhc-CccccCCCchhhhhh
Confidence            34444555555544 34444445555555555555554 4444443 34455555554444321 233344444444444


Q ss_pred             ccCcccc-ccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          324 LEGNRFV-GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       324 l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      +..|.+. ...|..|..+..|+-|++++|++. .+|..++++++|+.|.+.+|++. ..|..+..+++|+.|.+.||+++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            4444432 123444444444444444444443 44444444444444444444444 23444444444444444444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.23  E-value=4.8e-13  Score=115.02  Aligned_cols=242  Identities=22%  Similarity=0.229  Sum_probs=113.6

Q ss_pred             chHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCc---cCCCCchh
Q 048657          162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNN---FRGHIPVE  238 (456)
Q Consensus       162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~  238 (456)
                      +.+.+.....+..++++++.+......+....+.                     +.++|+..+++..-   ....+|..
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~---------------------~~~~L~~v~~sd~ftGR~~~Ei~e~   80 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLA---------------------SKKELREVNLSDMFTGRLKDEIPEA   80 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHh---------------------hcccceeeehHhhhcCCcHHHHHHH
Confidence            3445556677888899888877655555433222                     22333333333210   00111211


Q ss_pred             hh------ccCCcceEEEccCCccCCCcc----ccccCCCCCcEEeccCCcCCCcccchh------------hcCCCccc
Q 048657          239 IG------DVLPSLYVFNNSMNALDGSIP----SSFGNMKFLQILDLSNNHLTGEIPEHL------------AVGCVNLE  296 (456)
Q Consensus       239 ~~------~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~~------------~~~~~~L~  296 (456)
                      +-      ..++.|++++++.|-+....+    .-+.++..|++|.+.+|.+.......+            ....+.|+
T Consensus        81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr  160 (382)
T KOG1909|consen   81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR  160 (382)
T ss_pred             HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence            11      113456666666555442222    234567778888888887652211111            11234566


Q ss_pred             EEEccCCcccccc----cccccccccccEEEccCccccc----cccccccCCCCCcEEEcCCCcCccc----cCccccCC
Q 048657          297 SLALSNNNLEGHM----FSRNFNLANLKLLQLEGNRFVG----EIPQSLSKCSSLEGLHLNNNSLSGR----IPRWLGNL  364 (456)
Q Consensus       297 ~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~  364 (456)
                      ++....|++....    ...+...+.|+.+.+..|.+..    .....+.+|+.|+.|++.+|.++..    +...++..
T Consensus       161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~  240 (382)
T KOG1909|consen  161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW  240 (382)
T ss_pred             EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence            6666665554321    1223334555555555555431    1233445555555555555554422    22334444


Q ss_pred             CCCcEEEcCCCcccccCchhc-----cCCCCCCeEeCcCCccCCCCCcccc-----cccccEEEccCccc
Q 048657          365 TWLQYIIMPNNHLEGLIPVEF-----CQLDSLQILDISDNNISGSLPACFH-----PLSIKQVHLSKNML  424 (456)
Q Consensus       365 ~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~L~~l~l~~~~~  424 (456)
                      ++|+++++++|.+......++     ...|+|+.+.+.+|.++........     .+.|..|+|++|.+
T Consensus       241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            555555555555443222211     1245555555555555433222111     33455555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=1.2e-12  Score=112.65  Aligned_cols=244  Identities=19%  Similarity=0.211  Sum_probs=151.0

Q ss_pred             CCCccccceeeccCCCCCCC---CchHHhhcCCCccEEEecCccc---ccccchhhhhccccceeeeecccCcCCCCCcC
Q 048657          141 IPPKFQLSRLSLSSGYEDGV---TFPKFLYHQHDLEYVDLSHIKM---NGEFPTWLLENNTKLIQLSVVNDSLAGPFRLP  214 (456)
Q Consensus       141 ~~~~~~L~~l~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  214 (456)
                      ..+...++.++++++.....   .+...+...+.|+..+++.-..   .++++..+-                  .+...
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~------------------~l~~a   87 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK------------------MLSKA   87 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH------------------HHHHH
Confidence            34555788888866544332   2345556677888888876422   223332210                  01112


Q ss_pred             ccCCccccEEeCCCCccCCCCchhhhc---cCCcceEEEccCCccCCC-------------ccccccCCCCCcEEeccCC
Q 048657          215 IHSHKQLRLLDISTNNFRGHIPVEIGD---VLPSLYVFNNSMNALDGS-------------IPSSFGNMKFLQILDLSNN  278 (456)
Q Consensus       215 l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~l~l~~~~~~~~-------------~~~~l~~~~~L~~L~l~~~  278 (456)
                      +..+++|+.++++.|.+....+..+..   .+..|+.|.+.+|.+...             ........+.|+.+.+++|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            233344444444444443332222221   134455555555544311             1122456788999999999


Q ss_pred             cCCCcccc---hhhcCCCcccEEEccCCccccc----ccccccccccccEEEccCccccc----cccccccCCCCCcEEE
Q 048657          279 HLTGEIPE---HLAVGCVNLESLALSNNNLEGH----MFSRNFNLANLKLLQLEGNRFVG----EIPQSLSKCSSLEGLH  347 (456)
Q Consensus       279 ~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~  347 (456)
                      .+.+....   ..+...+.|+.+.+..|.+...    ....+..+++|+.|+|.+|.++.    .+...++.++.|+.|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            87633222   2344568899999999987632    33456689999999999998863    2455677889999999


Q ss_pred             cCCCcCccccCccc-----cCCCCCcEEEcCCCcccc----cCchhccCCCCCCeEeCcCCccC
Q 048657          348 LNNNSLSGRIPRWL-----GNLTWLQYIIMPNNHLEG----LIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       348 l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      +++|.+.......+     ...++|+.+.+.+|.++.    ....++...+.|++|++++|++.
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            99998875543322     247899999999999863    23345566889999999999983

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=1e-11  Score=100.21  Aligned_cols=130  Identities=28%  Similarity=0.341  Sum_probs=56.5

Q ss_pred             CCCccEEeccCCCCCCccccccc-CCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCC-cCCCCcc
Q 048657           19 MPSLKYLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL-VHLTSIE   96 (456)
Q Consensus        19 ~~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~l~~L~   96 (456)
                      +.++|+|+|+++.++.+.  .+. .+.+|+.|++++|.++..  +.+..+++|++|++++|+|+ .+.. .+ ..+++|+
T Consensus        18 ~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~   91 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQ   91 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-TT--
T ss_pred             cccccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-cccc-chHHhCCcCC
Confidence            456999999999988875  465 688999999999999833  36788999999999999999 6654 34 4689999


Q ss_pred             EEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEE
Q 048657           97 ELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVD  176 (456)
Q Consensus        97 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~  176 (456)
                      +|.+++|++........+..+++|+.|++.+|.++..                         ...-...+..+|+|+.||
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-------------------------~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-------------------------KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-------------------------TTHHHHHHHH-TT-SEET
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-------------------------hhHHHHHHHHcChhheeC
Confidence            9999999998666677888999999999999987532                         112234556778888887


Q ss_pred             ecC
Q 048657          177 LSH  179 (456)
Q Consensus       177 l~~  179 (456)
                      -..
T Consensus       147 ~~~  149 (175)
T PF14580_consen  147 GQD  149 (175)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=5.6e-12  Score=111.65  Aligned_cols=213  Identities=23%  Similarity=0.217  Sum_probs=116.4

Q ss_pred             hccccceeeeecccCcCCCCC-cCccCCccccEEeCCCCccCCC-CchhhhccCCcceEEEccCCccCCCccc-cccCCC
Q 048657          192 ENNTKLIQLSVVNDSLAGPFR-LPIHSHKQLRLLDISTNNFRGH-IPVEIGDVLPSLYVFNNSMNALDGSIPS-SFGNMK  268 (456)
Q Consensus       192 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~  268 (456)
                      .+..+|+.+.+.++.+..... .-...+++++.|++++|-+..- ....+.+.+++|+.|+++.|.+...... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            355667777776665543221 2345667777777777654421 1223455577777777777765422111 112456


Q ss_pred             CCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccc-cccccccCCCCCcEEE
Q 048657          269 FLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG-EIPQSLSKCSSLEGLH  347 (456)
Q Consensus       269 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~  347 (456)
                      .++.|.++.|+++..-..+....+|+|+.|.+..|............+..|++|+|++|++-. .......+++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            677777777776633333444467777777777763211112222345667777777776642 1123455667777777


Q ss_pred             cCCCcCccc-cCcc-----ccCCCCCcEEEcCCCccccc-CchhccCCCCCCeEeCcCCccCCC
Q 048657          348 LNNNSLSGR-IPRW-----LGNLTWLQYIIMPNNHLEGL-IPVEFCQLDSLQILDISDNNISGS  404 (456)
Q Consensus       348 l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~  404 (456)
                      ++.|++... .|+.     ...+++|+.|++..|++.+- ....+..+++|+.|.+.+|+++..
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            777766532 2222     23456677777777666421 112334455666666666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=1.6e-11  Score=103.67  Aligned_cols=135  Identities=25%  Similarity=0.258  Sum_probs=104.2

Q ss_pred             ccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeE
Q 048657          315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQIL  394 (456)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  394 (456)
                      .+..|+++++++|.++ .+.+.++-.|.++.|+++.|.+...  +.+..+++|..|++++|.++.. ..+-..+-+.++|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeee
Confidence            4577899999999987 6777888889999999999988633  3488889999999999988743 3444567788999


Q ss_pred             eCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657          395 DISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       395 ~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      .+++|.+.. .......-+|..||+++|++..--....++++|-|+.+.+.+||+. .+|+
T Consensus       358 ~La~N~iE~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd  416 (490)
T KOG1259|consen  358 KLAQNKIET-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVD  416 (490)
T ss_pred             ehhhhhHhh-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence            999998763 2233335588999999999854444456889999999999999998 4444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=1.2e-10  Score=93.99  Aligned_cols=127  Identities=26%  Similarity=0.254  Sum_probs=49.2

Q ss_pred             ccccccEEEccCcccccccccccc-CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCe
Q 048657          315 NLANLKLLQLEGNRFVGEIPQSLS-KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI  393 (456)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  393 (456)
                      ++.++++|++.++.+. .+ +.+. .+.+|+.|++++|.++..  +.+..+++|++|++++|.++...+.....+|+|+.
T Consensus        17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            5567899999999987 33 3444 578899999999998733  46888999999999999998653322246889999


Q ss_pred             EeCcCCccCCCCCc--ccccccccEEEccCcccCCCCCc--ccccCCCcceEEEcc
Q 048657          394 LDISDNNISGSLPA--CFHPLSIKQVHLSKNMLHGQLKR--GTFFNCSSLVTLDLS  445 (456)
Q Consensus       394 L~l~~~~l~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~~L~~L~l~  445 (456)
                      |++++|++.....-  ...+++|+.|++.+|+++..-..  .++..+|+|+.||-.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            99999998764332  12377899999999998633221  245678999988644

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.05  E-value=1.3e-10  Score=117.39  Aligned_cols=107  Identities=21%  Similarity=0.213  Sum_probs=83.5

Q ss_pred             CCCccEEeccCCC--CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCcc
Q 048657           19 MPSLKYLSLSDSN--SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE   96 (456)
Q Consensus        19 ~~~L~~L~L~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~   96 (456)
                      ++.|++|-+.++.  +..+..+.|..+|.|++||+++|.--+.+|+.++++-+||+|+++++.+. .+|. .+.++++|.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhh
Confidence            6678888888875  66777666888899999999887655588899999999999999999888 8887 888888999


Q ss_pred             EEEcCCceeeeccCCCcccccccceEEeccCc
Q 048657           97 ELMLSNNHFQIPISLEPFFNHSRLKFFYAENN  128 (456)
Q Consensus        97 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~  128 (456)
                      +|++..+... ...+.....+.+||.|.+...
T Consensus       622 ~Lnl~~~~~l-~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  622 YLNLEVTGRL-ESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             eecccccccc-ccccchhhhcccccEEEeecc
Confidence            9998876543 222455666888888877654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.1e-10  Score=103.53  Aligned_cols=190  Identities=20%  Similarity=0.126  Sum_probs=93.3

Q ss_pred             HhhcCCCccEEEecCccccccc-chhhhhccccceeeeecccCcCCCCCcCc-cCCccccEEeCCCCccCCCCchhhhcc
Q 048657          165 FLYHQHDLEYVDLSHIKMNGEF-PTWLLENNTKLIQLSVVNDSLAGPFRLPI-HSHKQLRLLDISTNNFRGHIPVEIGDV  242 (456)
Q Consensus       165 ~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~  242 (456)
                      ....|++++.||+++|=+.... ...++..+++|+.|+++.|.+........ ..+++|+.|.++.|.++..-..+....
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            4455666666666665433211 12234566666666666665543322221 244566666666666554444444444


Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccc------ccc
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN------FNL  316 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~  316 (456)
                      +|++..|.+..|............+..|+.|+|++|++-+.-.......++.|..++++.+++.+......      ..+
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            66666666666532112222233355566666666654422212222345666666666665554332221      235


Q ss_pred             ccccEEEccCccccc-cccccccCCCCCcEEEcCCCcCc
Q 048657          317 ANLKLLQLEGNRFVG-EIPQSLSKCSSLEGLHLNNNSLS  354 (456)
Q Consensus       317 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~  354 (456)
                      ++|+.|++..|++.. .....+..+++|+.|.+..|.++
T Consensus       301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            566666666666531 11122334455555555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.02  E-value=1.2e-11  Score=113.12  Aligned_cols=169  Identities=28%  Similarity=0.409  Sum_probs=83.4

Q ss_pred             EEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCC
Q 048657          272 ILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN  351 (456)
Q Consensus       272 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  351 (456)
                      ..+++.|.+. ++|..+. .|-.|+.+.+..|.+.. ++..+..+..|+.++++.|+++ ..|..++.|+ |+.|-+++|
T Consensus        79 ~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhccccccc-cCchHHH-HHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            3444444444 4443332 23344444444444332 2233344455555555555554 4444444444 555555555


Q ss_pred             cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657          352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG  431 (456)
Q Consensus       352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  431 (456)
                      .++ .+|+.++...+|..|+.+.|.+. ..+..+..+.+|+.|+++.|.+...+.... ...|..||++.|++. .+|.+
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecchh
Confidence            554 55555555555555555555554 334445555555555555555543333222 445555555555553 44444


Q ss_pred             cccCCCcceEEEccCcccC
Q 048657          432 TFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       432 ~~~~~~~L~~L~l~~~~l~  450 (456)
                       |..+..|++|-|.+||+.
T Consensus       230 -fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  230 -FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -hhhhhhheeeeeccCCCC
Confidence             555555555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=3.3e-10  Score=75.14  Aligned_cols=61  Identities=34%  Similarity=0.533  Sum_probs=42.5

Q ss_pred             CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcc
Q 048657           20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQL   80 (456)
Q Consensus        20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i   80 (456)
                      |+|++|++++|.++.++.++|.++++|++|++++|.++...+.+|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4667777777777777766777777777777777777656666677777777777776653

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=8.5e-10  Score=104.23  Aligned_cols=175  Identities=34%  Similarity=0.445  Sum_probs=88.8

Q ss_pred             CcceEEEccCCccCCCccccccCCC-CCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          244 PSLYVFNNSMNALDGSIPSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       244 ~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +.+..+.+..+.++ .++....... +|+.|+++++.+. .++... ..+++|+.|++++|++.+.... .+..+.|+.|
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccCCchhhhhhhh-hhhhhhhhhe
Confidence            45666666666555 3334444442 5666666666555 433222 2455666666666655543321 1144555666


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++++|.+. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++... +..+..++.++.|++++|.++
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc
Confidence            66666655 34433334444556666655322 3444455555555555555555421 344445555666666665555


Q ss_pred             CCCCcccccccccEEEccCcccCC
Q 048657          403 GSLPACFHPLSIKQVHLSKNMLHG  426 (456)
Q Consensus       403 ~~~~~~~~~~~L~~l~l~~~~~~~  426 (456)
                      .... .....+++.++++++.+..
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cccc-ccccCccCEEeccCccccc
Confidence            4433 3234455555555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.90  E-value=1.1e-09  Score=110.65  Aligned_cols=114  Identities=25%  Similarity=0.300  Sum_probs=85.6

Q ss_pred             hhhhHHhhcCCCccEEeccCCC-CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCC
Q 048657           10 SFLQIIGESMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP   88 (456)
Q Consensus        10 ~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~   88 (456)
                      .++.++...+|.|++|||++|. ...+| +.++++-+||+|+++++.+. .+|..+.+++.|.+|++..+.-...++ ..
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i  637 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GI  637 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-ch
Confidence            3444545559999999999888 77777 68999999999999999999 999999999999999999986553443 35


Q ss_pred             CcCCCCccEEEcCCceee-eccCCCcccccccceEEecc
Q 048657           89 LVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAE  126 (456)
Q Consensus        89 ~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~l~l~  126 (456)
                      ...+++|++|.+...... .......+..+.+|+.+...
T Consensus       638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             hhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            556999999999865421 12223344455555555553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.89  E-value=5e-11  Score=105.15  Aligned_cols=155  Identities=21%  Similarity=0.151  Sum_probs=91.1

Q ss_pred             cCCcceEEEccCCccCCC-cccc-ccCCCCCcEEeccCCc-CCCcccchhhcCCCcccEEEccCCcccc-c-cccccccc
Q 048657          242 VLPSLYVFNNSMNALDGS-IPSS-FGNMKFLQILDLSNNH-LTGEIPEHLAVGCVNLESLALSNNNLEG-H-MFSRNFNL  316 (456)
Q Consensus       242 ~~~~L~~l~l~~~~~~~~-~~~~-l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~  316 (456)
                      .+..|+.+..+++...+. ...+ -.++++|+.+.++.|+ +++..-..+...++.|+.+++.++.... . ....-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            345566666655543221 1112 2456777777777774 3322223445567788888888775432 1 11222367


Q ss_pred             ccccEEEccCcccc-cc----ccccccCCCCCcEEEcCCCcC-ccccCccccCCCCCcEEEcCCCcc-cccCchh-ccCC
Q 048657          317 ANLKLLQLEGNRFV-GE----IPQSLSKCSSLEGLHLNNNSL-SGRIPRWLGNLTWLQYIIMPNNHL-EGLIPVE-FCQL  388 (456)
Q Consensus       317 ~~L~~L~l~~~~~~-~~----~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~-~~~~  388 (456)
                      +.|+.+.+++|... +.    ....-.....++.++++++.. ++...+.+..|++|+.+++.+|+- +...... -..+
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l  451 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL  451 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence            88888888877642 11    122334567788899998864 456677888889999999888853 3222222 2356


Q ss_pred             CCCCeEeC
Q 048657          389 DSLQILDI  396 (456)
Q Consensus       389 ~~L~~L~l  396 (456)
                      |+++..-+
T Consensus       452 p~i~v~a~  459 (483)
T KOG4341|consen  452 PNIKVHAY  459 (483)
T ss_pred             ccceehhh
Confidence            66655443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=4.5e-11  Score=100.83  Aligned_cols=160  Identities=20%  Similarity=0.097  Sum_probs=66.9

Q ss_pred             cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCc-cCC-CccccccCCCCCcEEeccCCcCCCcccch-hhcCC
Q 048657          216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA-LDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEH-LAVGC  292 (456)
Q Consensus       216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~  292 (456)
                      ..|.+|+.+.+.++++.+.+...+++ -.+|+.++++++. ++. ..--.+..|+.|.+|+++.|.+..+.... +..--
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            34444444444444444444433333 3445555554432 211 11112344555555555555443222111 11112


Q ss_pred             CcccEEEccCCccc--c-cccccccccccccEEEccCccc-cccccccccCCCCCcEEEcCCCcC-ccccCccccCCCCC
Q 048657          293 VNLESLALSNNNLE--G-HMFSRNFNLANLKLLQLEGNRF-VGEIPQSLSKCSSLEGLHLNNNSL-SGRIPRWLGNLTWL  367 (456)
Q Consensus       293 ~~L~~L~l~~~~~~--~-~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L  367 (456)
                      +.|+.|+++|++-.  . ....-...+|+|.+|++++|.. +......|-+++-|++|.++.|.. .....-.+...++|
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence            34555555554311  1 1111112455555555555432 222333444555555555555532 11111234445555


Q ss_pred             cEEEcCCCc
Q 048657          368 QYIIMPNNH  376 (456)
Q Consensus       368 ~~L~l~~~~  376 (456)
                      ..|++-+|-
T Consensus       366 ~yLdv~g~v  374 (419)
T KOG2120|consen  366 VYLDVFGCV  374 (419)
T ss_pred             EEEEecccc
Confidence            666655543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=2e-09  Score=71.34  Aligned_cols=61  Identities=38%  Similarity=0.568  Sum_probs=42.7

Q ss_pred             CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCcc
Q 048657          341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI  401 (456)
Q Consensus       341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  401 (456)
                      |+|++|++++|.++...++.|.++++|++|++++|.++...+.+|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777655556677777777777777777766666777777777777777754

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.84  E-value=6.8e-09  Score=98.10  Aligned_cols=186  Identities=34%  Similarity=0.482  Sum_probs=136.1

Q ss_pred             ccCCccccEEeCCCCccCCCCchhhhccCC-cceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCC
Q 048657          215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLP-SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV  293 (456)
Q Consensus       215 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  293 (456)
                      +...+.++.+++.++.+. .++..... .. +|+.++++.+.+. .++..+..+++|+.|++++|.+. +++.... ..+
T Consensus       112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~  186 (394)
T COG4886         112 LLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLS  186 (394)
T ss_pred             hhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhh
Confidence            344467888888888877 45544442 43 8889999888876 44456788899999999998887 6665432 577


Q ss_pred             cccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcC
Q 048657          294 NLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP  373 (456)
Q Consensus       294 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  373 (456)
                      .|+.+++++|.+...... ......|+++.+++|... ..+..+..+.++..+.+.+|++. ..+..+..+++++.|+++
T Consensus       187 ~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         187 NLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS  263 (394)
T ss_pred             hhhheeccCCccccCchh-hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccc
Confidence            888899999888764432 224556888888888544 45566778888888888888775 446778888889999999


Q ss_pred             CCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc
Q 048657          374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH  410 (456)
Q Consensus       374 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  410 (456)
                      +|.+.....  +....+++.++++++.++..++....
T Consensus       264 ~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         264 NNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence            998876544  77788899999999888766555544

>PLN03150 hypothetical protein; Provisional

Probab=98.83  E-value=1e-08  Score=101.42  Aligned_cols=107  Identities=33%  Similarity=0.523  Sum_probs=77.4

Q ss_pred             ccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657          319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD  398 (456)
Q Consensus       319 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  398 (456)
                      ++.|+|.++.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CccCCCCCccccc--ccccEEEccCcccC
Q 048657          399 NNISGSLPACFHP--LSIKQVHLSKNMLH  425 (456)
Q Consensus       399 ~~l~~~~~~~~~~--~~L~~l~l~~~~~~  425 (456)
                      |.+++..|..+..  .++..+++.+|...
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            7777666655442  34556677766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.83  E-value=1.3e-09  Score=92.26  Aligned_cols=127  Identities=25%  Similarity=0.251  Sum_probs=79.0

Q ss_pred             CcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEc
Q 048657          293 VNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM  372 (456)
Q Consensus       293 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  372 (456)
                      ..|+++++++|.++... .+..-.|.++.|++++|.+. .+. .+..+++|..|++++|.++ ....+=..+-+++.|.+
T Consensus       284 q~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhh-hhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            45777777777665422 23334677777777777775 222 2566777777777777665 44444455667777777


Q ss_pred             CCCcccccCchhccCCCCCCeEeCcCCccCCCCCcc--cccccccEEEccCcccC
Q 048657          373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPAC--FHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~~L~~l~l~~~~~~  425 (456)
                      .+|.+...  ..+..+.+|..|++++|++.......  ...+.|+.+.+.+|.+.
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            77766432  44556667777777777765443222  22566777777777774

>PLN03150 hypothetical protein; Provisional

Probab=98.82  E-value=1e-08  Score=101.50  Aligned_cols=108  Identities=29%  Similarity=0.426  Sum_probs=94.3

Q ss_pred             CCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEcc
Q 048657          342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLS  420 (456)
Q Consensus       342 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~  420 (456)
                      .++.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++..+..+. +++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            378899999999989999999999999999999999988898999999999999999999988777654 7899999999


Q ss_pred             CcccCCCCCcccccCCCcceEEEccCccc
Q 048657          421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRL  449 (456)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  449 (456)
                      +|.+.+.+|...-....++..+++.+|+.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            99999999987333345678899998863

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.81  E-value=2e-10  Score=101.38  Aligned_cols=303  Identities=17%  Similarity=0.056  Sum_probs=158.6

Q ss_pred             CccEEeccCCC-CCCcccccc-cCCCCCcEEEcccCc-ccccchhhh-hcCCCCcEEeccCC-ccccccCCCCCcCCCCc
Q 048657           21 SLKYLSLSDSN-SSRILDRGL-CSLVHLQELYIDNND-LRGSLPWCL-ANMTSLRILDVSSN-QLTGSISSSPLVHLTSI   95 (456)
Q Consensus        21 ~L~~L~L~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~-~i~~~~~~~~~~~l~~L   95 (456)
                      .||.|.++++. ..+-+...+ .++++++.|.+.+|. +++..-..+ ..|++|+++++..| .+|+.........+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            47888888876 444333344 478888888888884 443333333 34788888888885 44422222233457888


Q ss_pred             cEEEcCCceeeeccCCC-cccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCC-CCchHHhhcCCCcc
Q 048657           96 EELMLSNNHFQIPISLE-PFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG-VTFPKFLYHQHDLE  173 (456)
Q Consensus        96 ~~L~l~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~l~~~~~L~  173 (456)
                      ++|++++|.-......+ ...++..++.+.+++|.-...- ........+..+..+++..+.... ..+...-..++.|+
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE-ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH-HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            88888877533222222 2345556666666654321100 000000111122333332221111 11112223466777


Q ss_pred             EEEecCcc-cccccchhhhhccccceeeeecccCcC-CCCCcCc-cCCccccEEeCCCCccC-CCCchhhhccCCcceEE
Q 048657          174 YVDLSHIK-MNGEFPTWLLENNTKLIQLSVVNDSLA-GPFRLPI-HSHKQLRLLDISTNNFR-GHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       174 ~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~l  249 (456)
                      .++.+++. +++.....+...+++|+.+.+..|+.- ..-...+ .+++.|+.+++.++... +..-......++.++.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            77777664 444444445567777888877777632 1111122 46677777777776432 11122333446777777


Q ss_pred             EccCCccCCCc-----cccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcc-cccccccc-cccccccEE
Q 048657          250 NNSMNALDGSI-----PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL-EGHMFSRN-FNLANLKLL  322 (456)
Q Consensus       250 ~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L  322 (456)
                      .+++|......     ...-.....++.+.+.++....+-.-.....+++|+.+++-+|+- +......+ ..+|+++..
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            77766533111     122234566778888887543233333344678888888887743 33222222 245665554


Q ss_pred             Ec
Q 048657          323 QL  324 (456)
Q Consensus       323 ~l  324 (456)
                      .+
T Consensus       458 a~  459 (483)
T KOG4341|consen  458 AY  459 (483)
T ss_pred             hh
Confidence            33

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.79  E-value=3e-10  Score=104.18  Aligned_cols=171  Identities=29%  Similarity=0.419  Sum_probs=123.9

Q ss_pred             cEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEcc
Q 048657          222 RLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS  301 (456)
Q Consensus       222 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  301 (456)
                      ...+++.|.+. .+|..+.. +..|..+.+..|.+. .+|..+.++..|+.++++.|+++ ..|..++  ..-|+.+.++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~s  151 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVS  151 (722)
T ss_pred             hhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEe
Confidence            34566667666 56655443 556666666666554 56777778888888888888877 6676665  3447888888


Q ss_pred             CCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccC
Q 048657          302 NNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI  381 (456)
Q Consensus       302 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  381 (456)
                      +|+++... ..++..+.|..|+.+.|.+. .+|..+..+.+|+.|.++.|.+. .+|+.+. .-.|..||++.|++. .+
T Consensus       152 NNkl~~lp-~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  152 NNKLTSLP-EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             cCccccCC-cccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence            88877543 33446777888888888887 67777888888888888888776 5666666 445788888888887 56


Q ss_pred             chhccCCCCCCeEeCcCCccCC
Q 048657          382 PVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       382 ~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      |..|..|+.|+.|-|.+|++..
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCC
Confidence            7788888888888888888874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=5.9e-10  Score=94.22  Aligned_cols=184  Identities=23%  Similarity=0.160  Sum_probs=124.2

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCc-cCCCCchhhhccCCcceE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNN-FRGHIPVEIGDVLPSLYV  248 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~  248 (456)
                      ..++.+|++...++......++..|.+|+.|.+.+......+...++.-..|+.++++.+. ++.....-+...++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3577777777776655555666777888888888777777777777777888888888764 443333445556778888


Q ss_pred             EEccCCccCCCccccc--cCCCCCcEEeccCCc--CCCcccchhhcCCCcccEEEccCCc-ccccccccccccccccEEE
Q 048657          249 FNNSMNALDGSIPSSF--GNMKFLQILDLSNNH--LTGEIPEHLAVGCVNLESLALSNNN-LEGHMFSRNFNLANLKLLQ  323 (456)
Q Consensus       249 l~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~  323 (456)
                      |+++.|.........+  .--++|+.|+++++.  +...-......++|++.+|++++|. +....+..+..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            8888876653222211  124678888888873  2222223445689999999998874 4444455566889999999


Q ss_pred             ccCcccc-ccccccccCCCCCcEEEcCCCcC
Q 048657          324 LEGNRFV-GEIPQSLSKCSSLEGLHLNNNSL  353 (456)
Q Consensus       324 l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~  353 (456)
                      ++.|..- ......+...|+|.+|++.+|--
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            9998652 11223456789999999998743

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=1.6e-08  Score=85.69  Aligned_cols=108  Identities=21%  Similarity=0.275  Sum_probs=77.6

Q ss_pred             ccEEeccCCCCCCcccc-cc-cCCCCCcEEEcccCcccc--cchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccE
Q 048657           22 LKYLSLSDSNSSRILDR-GL-CSLVHLQELYIDNNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE   97 (456)
Q Consensus        22 L~~L~L~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~   97 (456)
                      +..|.+.++.++..... .| ..+.++++++|.+|.+++  ....-+.++|.|++|+++.|++.+.|..-. ....+|++
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEE
Confidence            44666666766655532 22 367899999999999873  233445679999999999998886555411 45678999


Q ss_pred             EEcCCceeeeccCCCcccccccceEEeccCccc
Q 048657           98 LMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI  130 (456)
Q Consensus        98 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  130 (456)
                      |.+.++.+.-......+..+|.++++.++.|.+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            999988776444445667788999999988854

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=2.7e-08  Score=84.33  Aligned_cols=186  Identities=20%  Similarity=0.212  Sum_probs=106.9

Q ss_pred             hHHhhcCCCccEEeccCCCCCCccc--ccccCCCCCcEEEcccCcccccchhhh-hcCCCCcEEeccCCccccccCCCCC
Q 048657           13 QIIGESMPSLKYLSLSDSNSSRILD--RGLCSLVHLQELYIDNNDLRGSLPWCL-ANMTSLRILDVSSNQLTGSISSSPL   89 (456)
Q Consensus        13 ~~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~~~   89 (456)
                      +.++..+.+++.+||.+|.+.+...  ..+.++|+|+.|+++.|.+. ....++ ....+|++|-+.++.+...-....+
T Consensus        64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l  142 (418)
T KOG2982|consen   64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL  142 (418)
T ss_pred             HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence            4466668899999999999776542  23468999999999999886 333333 3567999999999987755555577


Q ss_pred             cCCCCccEEEcCCceeee-ccCCC----------cccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCC
Q 048657           90 VHLTSIEELMLSNNHFQI-PISLE----------PFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED  158 (456)
Q Consensus        90 ~~l~~L~~L~l~~~~~~~-~~~~~----------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  158 (456)
                      ..+|.+++|.++.|.+.- ....+          .++..+.+..++.+.|.+..+.+          ++..+.+-.+...
T Consensus       143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp----------nv~sv~v~e~PlK  212 (418)
T KOG2982|consen  143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP----------NVNSVFVCEGPLK  212 (418)
T ss_pred             hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc----------cchheeeecCccc
Confidence            789999999999884320 01111          12222233333333333322211          2222222122222


Q ss_pred             CCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCC
Q 048657          159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAG  209 (456)
Q Consensus       159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  209 (456)
                      ..+..+....++.+..|+++.+++.+...-..+..++.|..|.++.++++.
T Consensus       213 ~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  213 TESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             chhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            223333334445555666666665543333334556666666666655544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.44  E-value=3.5e-08  Score=97.46  Aligned_cols=161  Identities=21%  Similarity=0.301  Sum_probs=114.9

Q ss_pred             CCccEEeccCCC-CCCcccccc-cCCCCCcEEEcccCcccc-cchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCcc
Q 048657           20 PSLKYLSLSDSN-SSRILDRGL-CSLVHLQELYIDNNDLRG-SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE   96 (456)
Q Consensus        20 ~~L~~L~L~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~   96 (456)
                      .+|++|++++.. +..-....+ ..+|.|+.|.+.+-.+.. .+..-..++|+|..||+|+++++ .+  ..+.++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence            479999999866 332222333 468999999999877642 33445567899999999999998 55  3688999999


Q ss_pred             EEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEE
Q 048657           97 ELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVD  176 (456)
Q Consensus        97 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~  176 (456)
                      +|.+.+-.+........+..+++|+.||++.........           +           ...+.+.-..+|+|+.||
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-----------i-----------i~qYlec~~~LpeLrfLD  256 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-----------I-----------IEQYLECGMVLPELRFLD  256 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-----------H-----------HHHHHHhcccCccccEEe
Confidence            999998777654555678889999999998765432110           0           001112223478999999


Q ss_pred             ecCcccccccchhhhhccccceeeeeccc
Q 048657          177 LSHIKMNGEFPTWLLENNTKLIQLSVVND  205 (456)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  205 (456)
                      .+++.+...+.+.+....++|+.+.+-.+
T Consensus       257 cSgTdi~~~~le~ll~sH~~L~~i~~~~~  285 (699)
T KOG3665|consen  257 CSGTDINEEILEELLNSHPNLQQIAALDC  285 (699)
T ss_pred             cCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence            99999888888777778888877775543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.38  E-value=3.4e-08  Score=82.70  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=20.6

Q ss_pred             HHhhcCCCccEEeccCCCCCCccccccc----CCCCCcEEEccc
Q 048657           14 IIGESMPSLKYLSLSDSNSSRILDRGLC----SLVHLQELYIDN   53 (456)
Q Consensus        14 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~----~l~~L~~L~l~~   53 (456)
                      .+.. +..+..++|++|.+...-++.++    +-++|+..+++.
T Consensus        25 el~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          25 ELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             HHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence            3444 55666666666665544434333    335555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.38  E-value=5.8e-08  Score=91.89  Aligned_cols=224  Identities=25%  Similarity=0.252  Sum_probs=93.8

Q ss_pred             cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657          216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL  295 (456)
Q Consensus       216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L  295 (456)
                      ..+.+++.+++..+.+.. +... ...+++|+.++++.|.+...  ..+..++.|+.|++.+|.+. .+....  .+..|
T Consensus        92 ~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~~~--~l~~L  164 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISGLE--SLKSL  164 (414)
T ss_pred             ccccceeeeeccccchhh-cccc-hhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hccCCc--cchhh
Confidence            344455555555554432 1111 11244555555555544321  12333444555555555544 322211  24455


Q ss_pred             cEEEccCCccccccc-ccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCC--CCcEEEc
Q 048657          296 ESLALSNNNLEGHMF-SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLT--WLQYIIM  372 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l  372 (456)
                      +.+++++|++..... . ...+.+++.+.+.+|.+..  ...+..+..+..+++.+|.+...  ..+..+.  +|+++++
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l  239 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYL  239 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceec--cCcccchhHHHHHHhc
Confidence            555555555443222 1 2344555555555555431  12222233333334444444311  1122222  2555666


Q ss_pred             CCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCC---CCcccccCCCcceEEEccCccc
Q 048657          373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQ---LKRGTFFNCSSLVTLDLSYNRL  449 (456)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~l  449 (456)
                      +++.+... +..+..++.+..+++.++++.... .......+..+....+.+...   .........+.++.+.+.++++
T Consensus       240 ~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  240 SGNRISRS-PEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             ccCccccc-cccccccccccccchhhccccccc-cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence            65555422 133444555555555555544221 111233344444444443211   0011123345556666666655


Q ss_pred             CCCC
Q 048657          450 NGSI  453 (456)
Q Consensus       450 ~~~~  453 (456)
                      -...
T Consensus       318 ~~~~  321 (414)
T KOG0531|consen  318 RKIS  321 (414)
T ss_pred             cccc
Confidence            4443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.28  E-value=1.2e-08  Score=96.57  Aligned_cols=182  Identities=25%  Similarity=0.230  Sum_probs=84.1

Q ss_pred             CcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCc--cCCCccccccC------CCCCcEEeccCCcCCCc
Q 048657          212 RLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA--LDGSIPSSFGN------MKFLQILDLSNNHLTGE  283 (456)
Q Consensus       212 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~l~~------~~~L~~L~l~~~~l~~~  283 (456)
                      +..+..+..|+.|.+.++++..  ...+......|+.|.++..-  +...+....+.      ...|...+++.|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            4445667777777777776652  22222223345554443221  00000000000      112333344444443 2


Q ss_pred             ccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccC
Q 048657          284 IPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGN  363 (456)
Q Consensus       284 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  363 (456)
                      ++..+ .-++.++.|++++|++++..  .+..+++|++|+|+.|.+..+.......|. |..|.+++|.++.  ...+.+
T Consensus       179 mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~  252 (1096)
T KOG1859|consen  179 MDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIEN  252 (1096)
T ss_pred             HHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhhHHh
Confidence            22222 13455666666666655422  344556666666666665522222333344 6666666665542  234556


Q ss_pred             CCCCcEEEcCCCccccc-CchhccCCCCCCeEeCcCCccC
Q 048657          364 LTWLQYIIMPNNHLEGL-IPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       364 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      +.+|+.||++.|-+.+. -...+..+..|+.|.|.||++.
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            66666666666644321 1122233445666666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=2.3e-07  Score=77.78  Aligned_cols=36  Identities=22%  Similarity=0.024  Sum_probs=26.1

Q ss_pred             CchHHhhcCCCccEEEecCcccccccchhhhhcccc
Q 048657          161 TFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK  196 (456)
Q Consensus       161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  196 (456)
                      .+.+.+..+..+..+++++|.+..+...++.....+
T Consensus        21 ~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~   56 (388)
T COG5238          21 GVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIAN   56 (388)
T ss_pred             HHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhh
Confidence            345566678889999999999887777776554443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.22  E-value=1.4e-07  Score=89.30  Aligned_cols=194  Identities=29%  Similarity=0.262  Sum_probs=115.2

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +.++..+++..+.+... ...+..+++|++|++++|.+. .+...  ..++.|+.|++.+|.+.+..  .+..+..|+.+
T Consensus        94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~l--~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l  167 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEGL--STLTLLKELNLSGNLISDIS--GLESLKSLKLL  167 (414)
T ss_pred             ccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccch--hhccchhhheeccCcchhcc--CCccchhhhcc
Confidence            66778888877776532 222566777888888888776 44332  23555777777777776422  23346777777


Q ss_pred             EccCcccccccc-ccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCC--CCeEeCcCC
Q 048657          323 QLEGNRFVGEIP-QSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDS--LQILDISDN  399 (456)
Q Consensus       323 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~  399 (456)
                      ++++|.+..... . ...+..++.+.+.+|.+.  ..+.+..+..+..+++..|.+...-  .+..++.  |+.+++++|
T Consensus       168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n  242 (414)
T KOG0531|consen  168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGN  242 (414)
T ss_pred             cCCcchhhhhhhhh-hhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccC
Confidence            777777753222 1 466777777777777664  2234445555556677777665432  2222223  777888888


Q ss_pred             ccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657          400 NISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       400 ~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  450 (456)
                      ++.......-....+..+++.+|.+.. ...  +...+.+..+...++++.
T Consensus       243 ~i~~~~~~~~~~~~l~~l~~~~n~~~~-~~~--~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  243 RISRSPEGLENLKNLPVLDLSSNRISN-LEG--LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccccccccccccccccccchhhccccc-ccc--ccccchHHHhccCcchhc
Confidence            776443233335677777777777632 111  344455555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.22  E-value=1.4e-08  Score=96.11  Aligned_cols=178  Identities=28%  Similarity=0.236  Sum_probs=112.4

Q ss_pred             chhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCC----------CcccchhhcCCCcccEEEccCCcc
Q 048657          236 PVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT----------GEIPEHLAVGCVNLESLALSNNNL  305 (456)
Q Consensus       236 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~----------~~~~~~~~~~~~~L~~L~l~~~~~  305 (456)
                      |..++. +.+|+.|.+.++.+.. ......--..|++|...+. +.          +++....  ....|.+.+++.|++
T Consensus       102 pi~ifp-F~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFP-FRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSP--VWNKLATASFSYNRL  176 (1096)
T ss_pred             Cceecc-ccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccch--hhhhHhhhhcchhhH
Confidence            455554 6788888888877642 1111111123444433322 11          0111100  123577777777776


Q ss_pred             cccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCc-cccCCCCCcEEEcCCCcccccCchh
Q 048657          306 EGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPR-WLGNLTWLQYIIMPNNHLEGLIPVE  384 (456)
Q Consensus       306 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~  384 (456)
                      .. ...++.-++.|+.|+|++|+++.+.  .+..|+.|++||+++|.+. .+|. ....|. |..|.+++|.++..  ..
T Consensus       177 ~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~g  249 (1096)
T KOG1859|consen  177 VL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RG  249 (1096)
T ss_pred             Hh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hh
Confidence            53 2234445788899999999987432  6778899999999999886 3333 334455 89999999988754  56


Q ss_pred             ccCCCCCCeEeCcCCccCCC--CCcccccccccEEEccCcccC
Q 048657          385 FCQLDSLQILDISDNNISGS--LPACFHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       385 ~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~l~l~~~~~~  425 (456)
                      ++++.+|+-|++++|-+.+.  ....+....|+.|.|.||.+.
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            77888999999999876532  222344668888888898884

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=4.1e-06  Score=50.58  Aligned_cols=36  Identities=36%  Similarity=0.609  Sum_probs=16.4

Q ss_pred             CCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657           45 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus        45 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      +|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555554 33334445555555555555444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=1e-05  Score=48.83  Aligned_cols=38  Identities=26%  Similarity=0.398  Sum_probs=32.8

Q ss_pred             CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccc
Q 048657           20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG   58 (456)
Q Consensus        20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~   58 (456)
                      ++|++|++++|.+++++. .++++++|++|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence            579999999999999984 69999999999999999883

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.97  E-value=2.2e-05  Score=61.15  Aligned_cols=123  Identities=23%  Similarity=0.386  Sum_probs=51.5

Q ss_pred             cccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCC
Q 048657          312 RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL  391 (456)
Q Consensus       312 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  391 (456)
                      .|..+.+|+.+.+.+ .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344555566666553 233234445666666666666653 4434445566666677777655 3333444566666677


Q ss_pred             CeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcce
Q 048657          392 QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV  440 (456)
Q Consensus       392 ~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  440 (456)
                      +.+.+..+ +.......+....++.+.+.+ .+ ..++...|.++++|+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~-~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NI-TKIEENAFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT-T--EEE-TT-B--SS----GGG------
T ss_pred             cccccCcc-ccEEchhhhcCCCceEEEECC-Cc-cEECCccccccccCC
Confidence            77776553 433444444433666666665 22 256777777777664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.94  E-value=3.8e-05  Score=59.81  Aligned_cols=123  Identities=20%  Similarity=0.281  Sum_probs=49.4

Q ss_pred             cccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCC
Q 048657          263 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSS  342 (456)
Q Consensus       263 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  342 (456)
                      .+..+++|+.+.+.+ .+. .+....+..+.+++.+.+.++ +.......+..+++++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            345555666666653 333 455555555556666666553 4443444455555666666654 222133345555666


Q ss_pred             CcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCC
Q 048657          343 LEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ  392 (456)
Q Consensus       343 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  392 (456)
                      ++.+++..+ +.......|.++ +++.+.+.+ .+......+|.++++|+
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            666666543 333444455555 666666655 33334455566665553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.94  E-value=8.6e-07  Score=86.43  Aligned_cols=114  Identities=23%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             hccccceeeeecccCcCCC--CCcCccCCccccEEeCCCC-ccCCCCc---hhhhccCCcceEEEccCCc-cCCCccccc
Q 048657          192 ENNTKLIQLSVVNDSLAGP--FRLPIHSHKQLRLLDISTN-NFRGHIP---VEIGDVLPSLYVFNNSMNA-LDGSIPSSF  264 (456)
Q Consensus       192 ~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~l~l~~~~-~~~~~~~~l  264 (456)
                      ..++.|+.+.+..+.....  .......++.|+.|+++++ ......+   ......+++++.++++.+. +++.....+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            3455566665555533322  2223345566666666552 1111111   2233345566666666655 332222222


Q ss_pred             c-CCCCCcEEeccCCc-CCCcccchhhcCCCcccEEEccCCcc
Q 048657          265 G-NMKFLQILDLSNNH-LTGEIPEHLAVGCVNLESLALSNNNL  305 (456)
Q Consensus       265 ~-~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~  305 (456)
                      . .+++|+.|.+.+|. +++.....+...+++|++|++++|..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            2 36666666666554 44444445555566677777766643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=3.7e-06  Score=83.43  Aligned_cols=135  Identities=21%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             CCCcEEeccCCc-CCCcccchhhcCCCcccEEEccCCcccccc-cccccccccccEEEccCccccccccccccCCCCCcE
Q 048657          268 KFLQILDLSNNH-LTGEIPEHLAVGCVNLESLALSNNNLEGHM-FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEG  345 (456)
Q Consensus       268 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  345 (456)
                      .+|++|++++.. +...++......+|+|++|.+.+-.+.... .....++|+|..|++++++++..  .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            345555665542 222333444445666666666665443222 12223566777777777666522  56666777777


Q ss_pred             EEcCCCcCcc-ccCccccCCCCCcEEEcCCCccccc------CchhccCCCCCCeEeCcCCccCCC
Q 048657          346 LHLNNNSLSG-RIPRWLGNLTWLQYIIMPNNHLEGL------IPVEFCQLDSLQILDISDNNISGS  404 (456)
Q Consensus       346 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~~L~~L~l~~~~l~~~  404 (456)
                      |.+.+-.+.. .....+.++++|+.||+|.......      ...+-..+|.|+.||.++..+...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            7666655542 2223455667777777766543221      112233566777777776555433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=1.3e-05  Score=64.56  Aligned_cols=105  Identities=24%  Similarity=0.333  Sum_probs=75.0

Q ss_pred             ccEEeccCCCCCCccccccc-CCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657           22 LKYLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML  100 (456)
Q Consensus        22 L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l  100 (456)
                      =+.++|++..+..+..  ++ -..+...++|++|.+...  ..|..+++|.+|.+++|+|+ .|....-..+++|..|.+
T Consensus        21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             ccccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence            3566666665443332  22 235677888888876522  35677888999999999988 777645556788999999


Q ss_pred             CCceeeeccCCCcccccccceEEeccCcccc
Q 048657          101 SNNHFQIPISLEPFFNHSRLKFFYAENNQIN  131 (456)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  131 (456)
                      .+|.+........+..+|+|++|.+-+|...
T Consensus        96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cCcchhhhhhcchhccCCccceeeecCCchh
Confidence            9888875566778888888888888887664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.89  E-value=2e-05  Score=63.57  Aligned_cols=109  Identities=18%  Similarity=0.255  Sum_probs=86.3

Q ss_pred             CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCC-CCCcCCCCccEE
Q 048657           20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEEL   98 (456)
Q Consensus        20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~l~~L~~L   98 (456)
                      .....+||++|.+..++  .|..+++|..|.+.+|.|+...|.--.-+++|++|.+.+|.+- .+.+ +.+..||+|++|
T Consensus        42 d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            35678899999988776  5899999999999999999777766666899999999999876 4332 347789999999


Q ss_pred             EcCCceeeec--cCCCcccccccceEEeccCcccc
Q 048657           99 MLSNNHFQIP--ISLEPFFNHSRLKFFYAENNQIN  131 (456)
Q Consensus        99 ~l~~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~  131 (456)
                      .+-+|.....  .-...++.+|+|+.|+..+-...
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            9999987621  22346678899999998875543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=4.7e-07  Score=67.84  Aligned_cols=83  Identities=27%  Similarity=0.385  Sum_probs=35.5

Q ss_pred             ccccEEEccCcccccccccccc-CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEe
Q 048657          317 ANLKLLQLEGNRFVGEIPQSLS-KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD  395 (456)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  395 (456)
                      ..|+..++++|.+. ..|..|. ..+..+.|++.+|.+. .+|+.+..++.|+.|+++.|.+. ..|+.+..+.++..|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            34444445554444 2222222 2234444444444444 34444444444444444444444 2233333344444444


Q ss_pred             CcCCccC
Q 048657          396 ISDNNIS  402 (456)
Q Consensus       396 l~~~~l~  402 (456)
                      .-+|...
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            4444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.78  E-value=9.8e-07  Score=66.20  Aligned_cols=90  Identities=14%  Similarity=0.269  Sum_probs=42.6

Q ss_pred             CCCCCcEEEcCCCcCccccCcccc-CCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEE
Q 048657          339 KCSSLEGLHLNNNSLSGRIPRWLG-NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQV  417 (456)
Q Consensus       339 ~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l  417 (456)
                      ....|+..++++|.+. ..|..|. ..+..+.+++.+|.+... |..+..++.|+.|+++.|++...+...+...++-+|
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML  128 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence            3444555555555554 2222222 334555555555555533 233555555555555555554433333334445555


Q ss_pred             EccCcccCCCCCcc
Q 048657          418 HLSKNMLHGQLKRG  431 (456)
Q Consensus       418 ~l~~~~~~~~~~~~  431 (456)
                      +..+|... .++..
T Consensus       129 ds~~na~~-eid~d  141 (177)
T KOG4579|consen  129 DSPENARA-EIDVD  141 (177)
T ss_pred             cCCCCccc-cCcHH
Confidence            55555553 44444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.78  E-value=0.00021  Score=65.59  Aligned_cols=54  Identities=15%  Similarity=0.115  Sum_probs=26.9

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCC
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNN  303 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~  303 (456)
                      +.++..|+++.|.+. .+|.   -.++|+.|.+++|.--..+|..+   .++|++|.+++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence            456666666666544 2331   12346666666543211333322   245666666665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=0.00029  Score=64.69  Aligned_cols=32  Identities=31%  Similarity=0.240  Sum_probs=14.5

Q ss_pred             CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657          341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN  375 (456)
Q Consensus       341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  375 (456)
                      ++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            34555555555433 2232222  35555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.55  E-value=7.6e-06  Score=79.79  Aligned_cols=35  Identities=31%  Similarity=0.251  Sum_probs=15.0

Q ss_pred             CCCccEEeccCCC-CCCcc-cccccCCCCCcEEEccc
Q 048657           19 MPSLKYLSLSDSN-SSRIL-DRGLCSLVHLQELYIDN   53 (456)
Q Consensus        19 ~~~L~~L~L~~~~-~~~~~-~~~l~~l~~L~~L~l~~   53 (456)
                      +++|+.|.+.++. +++.. ......+++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            4555555555443 33211 11233445555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=4.2e-06  Score=70.66  Aligned_cols=57  Identities=19%  Similarity=0.100  Sum_probs=34.1

Q ss_pred             CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657           21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus        21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      +.++|+.++|.++++.  ...+++.|++|.|+-|+|+..  +.+..|++|+.|.|..|.|.
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence            5667777777766664  345667777777776666522  33445555555555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=5.8e-05  Score=63.61  Aligned_cols=88  Identities=22%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             cCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCC--ccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccc
Q 048657           41 CSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN--QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHS  118 (456)
Q Consensus        41 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  118 (456)
                      ..+..|+.|++.+++++..  ..+..+++|+.|.++.|  .+.+.+.. ...++|+|+++++++|++........+..+.
T Consensus        40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhc
Confidence            3556667777777666522  34556677888888877  55544443 4455678888888888776544555666667


Q ss_pred             cceEEeccCcccc
Q 048657          119 RLKFFYAENNQIN  131 (456)
Q Consensus       119 ~L~~l~l~~~~~~  131 (456)
                      +|..|++.+|...
T Consensus       117 nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  117 NLKSLDLFNCSVT  129 (260)
T ss_pred             chhhhhcccCCcc
Confidence            7777777766543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=9.7e-05  Score=62.29  Aligned_cols=104  Identities=22%  Similarity=0.335  Sum_probs=73.7

Q ss_pred             CCCccEEeccCCCCCCcccccccCCCCCcEEEcccC--cccccchhhhhcCCCCcEEeccCCccccccCC-CCCcCCCCc
Q 048657           19 MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNN--DLRGSLPWCLANMTSLRILDVSSNQLTGSISS-SPLVHLTSI   95 (456)
Q Consensus        19 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~l~~L   95 (456)
                      +..|+.|++.+..++.+-  .|..+++|++|.++.|  ++.+.++--...+|+|+++++++|++. .+.. ..+..+.+|
T Consensus        42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cccccchhhhhcch
Confidence            677888888877766554  5788999999999999  666566666667799999999999987 2221 235667788


Q ss_pred             cEEEcCCceeeeccC--CCcccccccceEEec
Q 048657           96 EELMLSNNHFQIPIS--LEPFFNHSRLKFFYA  125 (456)
Q Consensus        96 ~~L~l~~~~~~~~~~--~~~~~~~~~L~~l~l  125 (456)
                      ..|++..|.......  -..+.-+++|++++-
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            899998886552111  123344667776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=5.7e-05  Score=64.07  Aligned_cols=57  Identities=16%  Similarity=0.198  Sum_probs=26.6

Q ss_pred             CCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       342 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      +.+.|++.+|+++++  .....++.|+.|.|+-|.|+..  ..+..|++|+.|+|+.|.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence            444555555555432  1223444555555555555432  23444555555555555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.49  E-value=0.0075  Score=27.81  Aligned_cols=17  Identities=65%  Similarity=0.880  Sum_probs=8.4

Q ss_pred             CcceEEEccCcccCCCCC
Q 048657          437 SSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       437 ~~L~~L~l~~~~l~~~~p  454 (456)
                      ++|+.|++++|+++ ++|
T Consensus         1 ~~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             TT-SEEEETSS--S-SE-
T ss_pred             CccCEEECCCCCCC-CCc
Confidence            45677777777765 444

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.0048  Score=30.74  Aligned_cols=18  Identities=56%  Similarity=0.586  Sum_probs=12.3

Q ss_pred             cceEEEccCcccCCCCCCC
Q 048657          438 SLVTLDLSYNRLNGSIPDW  456 (456)
Q Consensus       438 ~L~~L~l~~~~l~~~~p~~  456 (456)
                      +|+.|++++|+++ +||++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            4677777777777 66653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.80  E-value=0.0085  Score=48.82  Aligned_cols=83  Identities=22%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             CccEEeccCCCCCCcccccccCCCCCcEEEcccCcc-cccchhhhh-cCCCCcEEeccCC-ccccccCCCCCcCCCCccE
Q 048657           21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDL-RGSLPWCLA-NMTSLRILDVSSN-QLTGSISSSPLVHLTSIEE   97 (456)
Q Consensus        21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~-~l~~L~~L~l~~~-~i~~~~~~~~~~~l~~L~~   97 (456)
                      .++.+|=+++++..+..+.+.+++.++.|.+.+|.- .+---+.+. -.++|+.|++++| +|| +-.-..+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHH
Confidence            367777777777777667778888888888888853 211111222 2489999999988 466 333235667888888


Q ss_pred             EEcCCce
Q 048657           98 LMLSNNH  104 (456)
Q Consensus        98 L~l~~~~  104 (456)
                      |.+.+-+
T Consensus       181 L~l~~l~  187 (221)
T KOG3864|consen  181 LHLYDLP  187 (221)
T ss_pred             HHhcCch
Confidence            8887643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.68  E-value=0.018  Score=28.68  Aligned_cols=12  Identities=58%  Similarity=0.772  Sum_probs=4.9

Q ss_pred             CcEEeccCCccc
Q 048657           70 LRILDVSSNQLT   81 (456)
Q Consensus        70 L~~L~l~~~~i~   81 (456)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.95  E-value=0.0069  Score=49.34  Aligned_cols=84  Identities=19%  Similarity=0.161  Sum_probs=47.7

Q ss_pred             CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCc-hhc-cCCCCCCeEeCcCC-ccCCCCCcccc-cccccE
Q 048657          341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIP-VEF-CQLDSLQILDISDN-NISGSLPACFH-PLSIKQ  416 (456)
Q Consensus       341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~-~l~~~~~~~~~-~~~L~~  416 (456)
                      ..++.++-+++.+..+..+.+..++.++.|.+.+|.--+-.. ..+ ...++|+.|++++| +||+-....+. .++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            346677777777776666777777777777777774321100 011 13457777777776 35543333322 556666


Q ss_pred             EEccCccc
Q 048657          417 VHLSKNML  424 (456)
Q Consensus       417 l~l~~~~~  424 (456)
                      |.+.+-+.
T Consensus       181 L~l~~l~~  188 (221)
T KOG3864|consen  181 LHLYDLPY  188 (221)
T ss_pred             HHhcCchh
Confidence            66655443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.51  E-value=0.00092  Score=63.75  Aligned_cols=85  Identities=25%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             CCCCcEEEcCCCcCccc----cCccccCCCC-CcEEEcCCCcccccC----chhccCC-CCCCeEeCcCCccCCCCCccc
Q 048657          340 CSSLEGLHLNNNSLSGR----IPRWLGNLTW-LQYIIMPNNHLEGLI----PVEFCQL-DSLQILDISDNNISGSLPACF  409 (456)
Q Consensus       340 l~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~l~~~~l~~~~~~~~  409 (456)
                      ..++++|++.+|.++..    ....+...++ ++++++..|.+.+..    ...+..+ +.++.++++.|.++.......
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            44555555555554421    1223333344 445555555554321    1222233 445556666665554433332


Q ss_pred             c-----cccccEEEccCccc
Q 048657          410 H-----PLSIKQVHLSKNML  424 (456)
Q Consensus       410 ~-----~~~L~~l~l~~~~~  424 (456)
                      .     ++.++++.+..|++
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHhhhHHHHHhhcccCcc
Confidence            2     33555555555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.88  E-value=0.085  Score=26.80  Aligned_cols=18  Identities=22%  Similarity=0.313  Sum_probs=8.5

Q ss_pred             CCCcEEEcccCcccccch
Q 048657           44 VHLQELYIDNNDLRGSLP   61 (456)
Q Consensus        44 ~~L~~L~l~~~~~~~~~~   61 (456)
                      ++|++|++++|++++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            455666666665554333

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.51  E-value=0.16  Score=26.31  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=11.7

Q ss_pred             CCccEEeccCCCCCCcccccc
Q 048657           20 PSLKYLSLSDSNSSRILDRGL   40 (456)
Q Consensus        20 ~~L~~L~L~~~~~~~~~~~~l   40 (456)
                      ++|++|+|++|.++.++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666555554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.51  E-value=0.16  Score=26.31  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=11.7

Q ss_pred             CCccEEeccCCCCCCcccccc
Q 048657           20 PSLKYLSLSDSNSSRILDRGL   40 (456)
Q Consensus        20 ~~L~~L~L~~~~~~~~~~~~l   40 (456)
                      ++|++|+|++|.++.++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666555554443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.92  E-value=0.0032  Score=60.17  Aligned_cols=185  Identities=22%  Similarity=0.177  Sum_probs=107.4

Q ss_pred             cCCccccEEeCCCCccCCCCchhhhccC----CcceEEEccCCccCC----CccccccCCCCCcEEeccCCcCCCcc---
Q 048657          216 HSHKQLRLLDISTNNFRGHIPVEIGDVL----PSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEI---  284 (456)
Q Consensus       216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~l~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~---  284 (456)
                      ...+.|..|++++|.+.+.....+...+    ..++++.+..|.++.    .+...+.....++.++++.|.+....   
T Consensus       112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~  191 (478)
T KOG4308|consen  112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV  191 (478)
T ss_pred             cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence            4445566666666665532222222111    245556666665553    34445566777888888877653111   


Q ss_pred             -cchhh---cCCCcccEEEccCCccccccc----cccccccc-ccEEEccCcccccc----ccccccCC-CCCcEEEcCC
Q 048657          285 -PEHLA---VGCVNLESLALSNNNLEGHMF----SRNFNLAN-LKLLQLEGNRFVGE----IPQSLSKC-SSLEGLHLNN  350 (456)
Q Consensus       285 -~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~  350 (456)
                       +....   ....+++++.+..|.++....    ..+...++ +..++++.|.+.+.    ....+..+ +.++.++++.
T Consensus       192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~  271 (478)
T KOG4308|consen  192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR  271 (478)
T ss_pred             HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence             11111   135668888888888764222    22233444 66788888887643    23344455 6778999999


Q ss_pred             CcCccc----cCccccCCCCCcEEEcCCCcccccCc----hhccCCCCCCeEeCcCCc
Q 048657          351 NSLSGR----IPRWLGNLTWLQYIIMPNNHLEGLIP----VEFCQLDSLQILDISDNN  400 (456)
Q Consensus       351 ~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~  400 (456)
                      |.+++.    +.+.+..++.++++.+++|.+.....    .....-..+..+.+.++.
T Consensus       272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~  329 (478)
T KOG4308|consen  272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG  329 (478)
T ss_pred             CCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence            988754    34455678889999999988864322    233344456666666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.63  E-value=0.43  Score=24.67  Aligned_cols=14  Identities=29%  Similarity=0.354  Sum_probs=6.4

Q ss_pred             CCcEEEcCCCcccc
Q 048657          366 WLQYIIMPNNHLEG  379 (456)
Q Consensus       366 ~L~~L~l~~~~~~~  379 (456)
                      +|+.|++++|++..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00369        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.63  E-value=0.43  Score=24.67  Aligned_cols=14  Identities=29%  Similarity=0.354  Sum_probs=6.4

Q ss_pred             CCcEEEcCCCcccc
Q 048657          366 WLQYIIMPNNHLEG  379 (456)
Q Consensus       366 ~L~~L~l~~~~~~~  379 (456)
                      +|+.|++++|++..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00370        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.90  E-value=0.021  Score=47.62  Aligned_cols=86  Identities=13%  Similarity=0.088  Sum_probs=42.6

Q ss_pred             HHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCC
Q 048657           14 IIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT   93 (456)
Q Consensus        14 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~   93 (456)
                      +++. +...+.||++.+..-.+. ..|+.+..+..|+++.+.+. .+|..+.....+++++...|..+ ..|. .....+
T Consensus        37 ei~~-~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~  111 (326)
T KOG0473|consen   37 EIAS-FKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEP  111 (326)
T ss_pred             hhhc-cceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccC
Confidence            3444 455555555554433333 23444455555555555554 45555555555555555555544 4444 444555


Q ss_pred             CccEEEcCCce
Q 048657           94 SIEELMLSNNH  104 (456)
Q Consensus        94 ~L~~L~l~~~~  104 (456)
                      .++++++..+.
T Consensus       112 ~~k~~e~k~~~  122 (326)
T KOG0473|consen  112 HPKKNEQKKTE  122 (326)
T ss_pred             CcchhhhccCc
Confidence            55555555444

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.89  E-value=0.44  Score=24.65  Aligned_cols=18  Identities=44%  Similarity=0.717  Sum_probs=12.4

Q ss_pred             CcceEEEccCcccCCCCCC
Q 048657          437 SSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       437 ~~L~~L~l~~~~l~~~~p~  455 (456)
                      ++|+.|++++|+++ ++|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            45677777777776 6664

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.35  E-value=0.59  Score=24.22  Aligned_cols=13  Identities=38%  Similarity=0.590  Sum_probs=6.7

Q ss_pred             CCCccEEeccCCC
Q 048657           19 MPSLKYLSLSDSN   31 (456)
Q Consensus        19 ~~~L~~L~L~~~~   31 (456)
                      |++|++|+|++|.
T Consensus         1 c~~L~~L~l~~C~   13 (26)
T smart00367        1 CPNLRELDLSGCT   13 (26)
T ss_pred             CCCCCEeCCCCCC
Confidence            3455555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.03  E-value=0.033  Score=46.57  Aligned_cols=83  Identities=17%  Similarity=0.088  Sum_probs=36.7

Q ss_pred             CCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEE
Q 048657          292 CVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII  371 (456)
Q Consensus       292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  371 (456)
                      +...+.|+++.+++.... ..+.-+..+..++++.+.+. ..|..+.+...+..++..+|... ..|..+...++++.++
T Consensus        41 ~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            344455555544433211 11222334444445444443 34444444444444444444443 4444444555555555


Q ss_pred             cCCCcc
Q 048657          372 MPNNHL  377 (456)
Q Consensus       372 l~~~~~  377 (456)
                      ..++.+
T Consensus       118 ~k~~~~  123 (326)
T KOG0473|consen  118 QKKTEF  123 (326)
T ss_pred             hccCcc
Confidence            544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	456
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-31
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-11
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-31
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-07
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		5e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		5e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		5e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		5e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 143/521 (27%), Positives = 224/521 (42%), Gaps = 123/521 (23%)
Query: 14  IIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRIL 73
           ++ +    LK+L++S +  S  +D   C  V+L+ L + +N+    +P+ L + ++L+ L
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228
Query: 74  DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAE 133
           D+S N+L+G  S + +   T ++ L +S+N F  PI   P      L++     N+   E
Sbjct: 229 DISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGE 284
Query: 134 ITQSHSLIPPKF------QLSRLSLSSGYEDGVTFPKF---------------------- 165
           I        P F       L+ L LS  +  G   P F                      
Sbjct: 285 I--------PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 166 --LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPF--RLPIHSHKQL 221
             L     L+ +DLS  + +GE P  L   +  L+ L + +++ +GP    L  +    L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 222 RLLDISTNNFRGHIPVEIGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
           + L +  N F G IP  + +   L SL++   S N L G+IPSS G++  L+ L L  N 
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHL---SFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 280 LTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
           L GEIP+ L                    M+ +      L+ L L+ N   GEIP  LS 
Sbjct: 454 LEGEIPQEL--------------------MYVKT-----LETLILDFNDLTGEIPSGLSN 488
Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
           C++L  + L+NN L+G IP+W+G L  L  + + NN   G IP E     SL  LD++ N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 400 NISGSLPACFHPLS---------------------IKQVHLSKNMLHGQLKRG------- 431
             +G++PA     S                      K+ H + N+L  Q  R        
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 432 ------------------TFFNCSSLVTLDLSYNRLNGSIP 454
                             TF N  S++ LD+SYN L+G IP
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 31/294 (10%)
Query: 177 LSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRL--PIHSHKQLRLLDISTNNFRGH 234
           LS+  +NG    +  + +  L  L +  +SL+GP      + S   L+ L++S+N     
Sbjct: 84  LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 235 IPVEIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIPEHL 288
             V  G  L SL V + S N++ G+      +    G +K L I   S N ++G++    
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVSR 198
Query: 289 AVGCVXXXXXXXXXXXXXGHMFSRNF----NLANLKLLQLEGNRFVGEIPQSLSKCSSLE 344
            V                 + FS       + + L+ L + GN+  G+  +++S C+ L+
Sbjct: 199 CV--------NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 345 GLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQ--LDSLQILDISDNNIS 402
            L++++N   G IP     L  LQY+ +  N   G IP +F     D+L  LD+S N+  
Sbjct: 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFY 307
Query: 403 GSLPACF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           G++P  F     ++ + LS N   G+L   T      L  LDLS+N  +G +P+
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 143/521 (27%), Positives = 224/521 (42%), Gaps = 123/521 (23%)
Query: 14  IIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRIL 73
           ++ +    LK+L++S +  S  +D   C  V+L+ L + +N+    +P+ L + ++L+ L
Sbjct: 169 VLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHL 225
Query: 74  DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAE 133
           D+S N+L+G  S + +   T ++ L +S+N F  PI   P      L++     N+   E
Sbjct: 226 DISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGE 281
Query: 134 ITQSHSLIPPKF------QLSRLSLSSGYEDGVTFPKF---------------------- 165
           I        P F       L+ L LS  +  G   P F                      
Sbjct: 282 I--------PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 166 --LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPF--RLPIHSHKQL 221
             L     L+ +DLS  + +GE P  L   +  L+ L + +++ +GP    L  +    L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 222 RLLDISTNNFRGHIPVEIGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
           + L +  N F G IP  + +   L SL++   S N L G+IPSS G++  L+ L L  N 
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHL---SFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 280 LTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
           L GEIP+ L                    M+ +      L+ L L+ N   GEIP  LS 
Sbjct: 451 LEGEIPQEL--------------------MYVKT-----LETLILDFNDLTGEIPSGLSN 485
Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
           C++L  + L+NN L+G IP+W+G L  L  + + NN   G IP E     SL  LD++ N
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 400 NISGSLPACFHPLS---------------------IKQVHLSKNMLHGQLKRG------- 431
             +G++PA     S                      K+ H + N+L  Q  R        
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 605
Query: 432 ------------------TFFNCSSLVTLDLSYNRLNGSIP 454
                             TF N  S++ LD+SYN L+G IP
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 136/298 (45%), Gaps = 39/298 (13%)
Query: 177 LSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRL--PIHSHKQLRLLDISTNNFRGH 234
           LS+  +NG    +  + +  L  L +  +SL+GP      + S   L+ L++S+N     
Sbjct: 81  LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 235 IPVEIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIPEHL 288
             V  G  L SL V + S N++ G+      +    G +K L I   S N ++G++    
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 192
Query: 289 AVGCVXXXXXXXXXXXXXGHMFSRNF--------NLANLKLLQLEGNRFVGEIPQSLSKC 340
              CV               + S NF        + + L+ L + GN+  G+  +++S C
Sbjct: 193 VSRCVNLEFL---------DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC 243
Query: 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFC--QLDSLQILDISD 398
           + L+ L++++N   G IP     L  LQY+ +  N   G IP +F     D+L  LD+S 
Sbjct: 244 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSG 300
Query: 399 NNISGSLPACF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           N+  G++P  F     ++ + LS N   G+L   T      L  LDLS+N  +G +P+
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 27/170 (15%)
Query: 260 IPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLAN 318
           IPSS  N+ +L  L +   N+L G IP  +A                          L  
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE 378
           L  L +      G IP  LS+  +L  L  + N+LSG +P  + +L  L  I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 379 GLIPVEFCQLDSL-QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQ 427
           G IP  +     L   + IS N ++G +P  F  L++  V LS+NML G 
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 333 IPQSLSKCSSLEGLHLNN-NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
           IP SL+    L  L++   N+L G IP  +  LT L Y+ + + ++ G IP    Q+ +L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 392 QILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVT-LDLSYNRL 449
             LD S N +SG+LP     L ++  +    N + G +   ++ + S L T + +S NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRL 186
Query: 450 NGSIP 454
            G IP
Sbjct: 187 TGKIP 191

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 12  LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
           L ++G+++P+L  L +S +  + +    L  L  LQELY+  N+L+   P  L     L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72  ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
            L +++NQLT  + +  L  L +++ L+L  N  + IP   + FF    L F +   N  
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
             N EI
Sbjct: 208 LCNCEI 213

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 12  LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
           L ++G+++P+L  L +S +  + +    L  L  LQELY+  N+L+   P  L     L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72  ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
            L +++NQLT  + +  L  L +++ L+L  N  + IP   + FF    L F +   N  
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
             N EI
Sbjct: 208 LCNCEI 213

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 12  LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
           L ++G+++P+L  L +S +  + +    L  L  LQELY+  N+L+   P  L     L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72  ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
            L +++NQLT  + +  L  L +++ L+L  N  + IP     FF    L F +   N  
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
             N EI
Sbjct: 208 LCNCEI 213

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 12  LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
           L ++G+++P+L  L +S +  + +    L  L  LQELY+  N+L+   P  L     L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72  ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
            L +++NQLT  + +  L  L +++ L+L  N  + IP     FF    L F +   N  
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
             N EI
Sbjct: 208 LCNCEI 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-60
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  286 bits (733), Expect = 6e-89
 Identities = 124/466 (26%), Positives = 195/466 (41%), Gaps = 43/466 (9%)

Query: 18  SMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
               LK+L++S +  S  +    +   V+L+ L + +N+    +P+ L + ++L+ LD+S
Sbjct: 176 GCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
            N+L+G  S + +   T ++ L +S+N F  PI   P      L++     N+   EI  
Sbjct: 232 GNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTGEIPD 287

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
             S       L+ L LS  +  G   P F      LE + LS    +GE P   L     
Sbjct: 288 FLSGACDT--LTGLDLSGNHFYG-AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 197 LIQLSVVNDSLAGPFRLPIHS-HKQLRLLDISTNNFRGHIPVEIGDV-LPSLYVFNNSMN 254
           L  L +  +  +G     + +    L  LD+S+NNF G I   +      +L       N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 255 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF 314
              G IP +  N   L  L LS N+L+G IP  L      L  L L  N LEG +     
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELM 463

Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
            +  L+ L L+ N   GEIP  LS C++L  + L+NN L+G IP+W+G L  L  + + N
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG--- 431
           N   G IP E     SL  LD++ N  +G++PA     S     ++ N + G+       
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS---GKIAANFIAGKRYVYIKN 580

Query: 432 ----------------------TFFNCSSLVTLDLSYNRLNGSIPD 455
                                      S+    +++     G    
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  277 bits (710), Expect = 1e-85
 Identities = 123/448 (27%), Positives = 183/448 (40%), Gaps = 42/448 (9%)

Query: 15  IGESMPSLKYLSLSDSN-SSRILD--RGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
            G  + SL+ L LS ++ S   +           L+ L I  N + G +   ++   +L 
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLE 203

Query: 72  ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN 131
            LDVSSN  +  I    L   ++++ L +S N      S       + LK     +NQ  
Sbjct: 204 FLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 260

Query: 132 AEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 191
             I        P   L                        L+Y+ L+  K  GE P +L 
Sbjct: 261 GPI--------PPLPLKS----------------------LQYLSLAENKFTGEIPDFLS 290

Query: 192 ENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNN 251
                L  L +  +   G       S   L  L +S+NNF G +P++    +  L V + 
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 252 SMNALDGSIPSSFGNMKF-LQILDLSNNHLTGEIPEHLAVGC-VNLESLALSNNNLEGHM 309
           S N   G +P S  N+   L  LDLS+N+ +G I  +L       L+ L L NN   G +
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 310 FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQY 369
                N + L  L L  N   G IP SL   S L  L L  N L G IP+ L  +  L+ 
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHGQL 428
           +I+  N L G IP       +L  + +S+N ++G +P     L  +  + LS N   G +
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 429 KRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
                 +C SL+ LDL+ N  NG+IP  
Sbjct: 531 PA-ELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  265 bits (679), Expect = 4e-81
 Identities = 107/447 (23%), Positives = 187/447 (41%), Gaps = 69/447 (15%)

Query: 18  SMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLA---NMTSLRIL 73
           S   LK+L++S +         G   L  L+ L +  N + G+             L+ L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 74  DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAE 133
            +S N+++G +    +    ++E L +S+N+F   I      + S L+      N+++ +
Sbjct: 184 AISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGD 238

Query: 134 ITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN 193
                                         + +    +L+ +++S  +  G  P   L++
Sbjct: 239 F----------------------------SRAISTCTELKLLNISSNQFVGPIPPLPLKS 270

Query: 194 NTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSM 253
                                      L+ L ++ N F G IP  +     +L   + S 
Sbjct: 271 ---------------------------LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 254 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN 313
           N   G++P  FG+   L+ L LS+N+ +GE+P    +    L+ L LS N   G +    
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 314 FNL-ANLKLLQLEGNRFVGEIPQSLSKC--SSLEGLHLNNNSLSGRIPRWLGNLTWLQYI 370
            NL A+L  L L  N F G I  +L +   ++L+ L+L NN  +G+IP  L N + L  +
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 371 IMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLK 429
            +  N+L G IP     L  L+ L +  N + G +P     + +++ + L  N L G++ 
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 430 RGTFFNCSSLVTLDLSYNRLNGSIPDW 456
                NC++L  + LS NRL G IP W
Sbjct: 484 S-GLSNCTNLNWISLSNNRLTGEIPKW 509

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  249 bits (639), Expect = 2e-75
 Identities = 117/446 (26%), Positives = 186/446 (41%), Gaps = 45/446 (10%)

Query: 21  SLKYLSLSDSNSSRILDR---GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
            +  + LS    +         L SL  L+ L++ N+ + GS+        SL  LD+S 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109

Query: 78  NQLTGSISSSP-LVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
           N L+G +++   L   + ++ L +S+N    P  +      + L+      N I+     
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
              L                               L+++ +S  K++G+     +     
Sbjct: 170 GWVLSD--------GCGE-----------------LKHLAISGNKISGDVD---VSRCVN 201

Query: 197 LIQLSVVNDSLAGPFRLP-IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
           L  L V +++ +    +P +     L+ LDIS N   G     I      L + N S N 
Sbjct: 202 LEFLDVSSNNFSTG--IPFLGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQ 258

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFN 315
             G IP     +K LQ L L+ N  TGEIP+ L+  C  L  L LS N+  G +     +
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 316 LANLKLLQLEGNRFVGEIP-QSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW-LQYIIMP 373
            + L+ L L  N F GE+P  +L K   L+ L L+ N  SG +P  L NL+  L  + + 
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 374 NNHLEGLIPVEFCQ--LDSLQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHGQLKR 430
           +N+  G I    CQ   ++LQ L + +N  +G +P      S +  +HLS N L G +  
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

Query: 431 GTFFNCSSLVTLDLSYNRLNGSIPDW 456
            +  + S L  L L  N L G IP  
Sbjct: 437 -SLGSLSKLRDLKLWLNMLEGEIPQE 461

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  244 bits (625), Expect = 3e-73
 Identities = 112/444 (25%), Positives = 174/444 (39%), Gaps = 64/444 (14%)

Query: 17  ESMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
             + SL+YLSL+++  +  I D    +   L  L +  N   G++P    + + L  L +
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEIT 135
           SSN  +G +    L+ +  ++ L LS N F   +        + L      +N  +    
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP-- 383

Query: 136 QSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 195
                I P   L +   ++                 L+ + L +    G+ P        
Sbjct: 384 -----ILP--NLCQNPKNT-----------------LQELYLQNNGFTGKIPPT------ 413

Query: 196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
                              + +  +L  L +S N   G IP  +G  L  L      +N 
Sbjct: 414 -------------------LSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM 453

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF- 314
           L+G IP     +K L+ L L  N LTGEIP  L+  C NL  ++LSNN L G    +   
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGE-IPKWIG 511

Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
            L NL +L+L  N F G IP  L  C SL  L LN N  +G IP  +   +      +  
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAA 567

Query: 375 NHLEGLIPVEFCQLDSLQILDISDN--NISGSLPACFHPLSIKQV-HLSKNMLHGQLKRG 431
           N + G   V        +    + N     G      + LS +   +++  +  G     
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP- 626

Query: 432 TFFNCSSLVTLDLSYNRLNGSIPD 455
           TF N  S++ LD+SYN L+G IP 
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  244 bits (625), Expect = 3e-73
 Identities = 109/428 (25%), Positives = 187/428 (43%), Gaps = 49/428 (11%)

Query: 41  CSLVHLQELYIDNNDLR---GSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 97
           C    +  + + +  L     ++   L ++T L  L +S++ + GS+S        S+  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTS 104

Query: 98  LMLSNNHFQIPISLEP-FFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGY 156
           L LS N    P++      + S LKF    +N ++         +    +L+        
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-----VSGGLKLNS------- 152

Query: 157 EDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN--TKLIQLSVVNDSLAGPFRLP 214
                          LE +DLS   ++G      + ++   +L  L++  + ++G   + 
Sbjct: 153 ---------------LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VD 195

Query: 215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 274
           +     L  LD+S+NNF   IP  +GD   +L   + S N L G    +      L++L+
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 275 LSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHM-FSRNFNLANLKLLQLEGNRFVGEI 333
           +S+N   G IP        +L+ L+L+ N   G +    +     L  L L GN F G +
Sbjct: 254 ISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 334 PQSLSKCSSLEGLHLNNNSLSGRIPR-WLGNLTWLQYIIMPNNHLEGLIPVEFCQL-DSL 391
           P     CS LE L L++N+ SG +P   L  +  L+ + +  N   G +P     L  SL
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370

Query: 392 QILDISDNNISGSLPACF---HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 448
             LD+S NN SG +          ++++++L  N   G++   T  NCS LV+L LS+N 
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNY 429

Query: 449 LNGSIPDW 456
           L+G+IP  
Sbjct: 430 LSGTIPSS 437

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  209 bits (535), Expect = 1e-60
 Identities = 105/443 (23%), Positives = 177/443 (39%), Gaps = 66/443 (14%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSL-VHLQELYIDNNDLRGSLP--WCLANMTSLRILD 74
            M  LK L LS +  S  L   L +L   L  L + +N+  G +    C     +L+ L 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 75  VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEI 134
           + +N  TG I  + L + + +  L LS N+    I      + S+L+      N +  EI
Sbjct: 401 LQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEI 458

Query: 135 TQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN 194
                                       P+ L +   LE + L    + GE P+ L  N 
Sbjct: 459 ----------------------------PQELMYVKTLETLILDFNDLTGEIPSGLS-NC 489

Query: 195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMN 254
           T L  +S+ N+ L G     I   + L +L +S N+F G+IP E+GD   SL   + + N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTN 548

Query: 255 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNN--NLEGHMFSR 312
             +G+IP++           ++ N + G+   ++       +    + N    +G    +
Sbjct: 549 LFNGTIPAAMFKQS----GKIAANFIAGKRYVYIK-NDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 313 NFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM 372
              L+      +    + G    +     S+  L ++ N LSG IP+ +G++ +L  + +
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663

Query: 373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGT 432
            +N + G IP E   L  L ILD+S N + G +P                          
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ------------------------A 699

Query: 433 FFNCSSLVTLDLSYNRLNGSIPD 455
               + L  +DLS N L+G IP+
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (383), Expect = 1e-39
 Identities = 82/323 (25%), Positives = 135/323 (41%), Gaps = 43/323 (13%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           S+  L+ L L  +     + + L  +  L+ L +D NDL G +P  L+N T+L  + +S+
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINAEIT 135
           N+LTG I    +  L ++  L LSNN F   IP  L    +   L +     N  N  I 
Sbjct: 500 NRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAEL---GDCRSLIWLDLNTNLFNGTI- 554

Query: 136 QSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLS--HIKMNGEFPTWLLEN 193
                 P         +++ +  G     ++ +    +    +   ++  G     L   
Sbjct: 555 ------PAAMFKQSGKIAANFIAG-KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-R 606

Query: 194 NTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSM 253
            +     ++ +    G       ++  +  LD+S N   G+IP EIG  +P L++ N   
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGH 665

Query: 254 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN 313
           N + GSIP   G+++ L ILDLS+N L G IP+ ++     L  + LSNNNL G      
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-ALTMLTEIDLSNNNLSG------ 718

Query: 314 FNLANLKLLQLEGNRFVGEIPQS 336
                              IP+ 
Sbjct: 719 ------------------PIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 3/106 (2%)

Query: 8   NTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANM 67
              ++ I  + M    + + +      I    L  L       I +    G       N 
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631

Query: 68  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISL 111
            S+  LD+S N L+G I    +  +  +  L L +N     IP  +
Sbjct: 632 GSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEV 676

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (468), Expect = 1e-54
 Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 8/245 (3%)

Query: 214 PIHSHKQLRLLDISTNNFRG--HIPVEIGDVLPSLYVFN-NSMNALDGSIPSSFGNMKFL 270
                 ++  LD+S  N      IP  + + LP L       +N L G IP +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFV 330
             L +++ +++G IP+ L+     L +L  S N L G +     +L NL  +  +GNR  
Sbjct: 104 HYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 331 GEIPQSLSKCSSL-EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD 389
           G IP S    S L   + ++ N L+G+IP    NL  L ++ +  N LEG   V F    
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221

Query: 390 SLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           + Q + ++ N+++  L       ++  + L  N ++G L +        L +L++S+N L
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNL 280

Query: 450 NGSIP 454
            G IP
Sbjct: 281 CGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (370), Expect = 2e-40
 Identities = 76/360 (21%), Positives = 125/360 (34%), Gaps = 86/360 (23%)

Query: 53  NNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLV-HLTSIEELMLSNNHFQIPISL 111
           N    G L         +  LD+S   L         + +L  +  L +           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--------- 85

Query: 112 EPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHD 171
                           N +          IPP   +++L+                    
Sbjct: 86  ---------------INNLVGP-------IPP--AIAKLT-------------------Q 102

Query: 172 LEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNF 231
           L Y+ ++H  ++G  P + L     L+ L    ++L+G                      
Sbjct: 103 LHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGT--------------------- 140

Query: 232 RGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL-QILDLSNNHLTGEIPEHLAV 290
              +P  I   LP+L       N + G+IP S+G+   L   + +S N LTG+IP     
Sbjct: 141 ---LPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP--TF 194

Query: 291 GCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN 350
             +NL  + LS N LEG       +  N + + L  N    ++   +    +L GL L N
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN 253

Query: 351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI--SGSLPAC 408
           N + G +P+ L  L +L  + +  N+L G IP     L    +   ++N       LPAC
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  137 bits (348), Expect = 2e-37
 Identities = 53/209 (25%), Positives = 75/209 (35%), Gaps = 30/209 (14%)

Query: 252 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IPEHLAVGCVNLESLALSN-NNLEGH 308
                 G +  +      +  LDLS  +L     IP  LA     L  L +   NNL G 
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGP 92

Query: 309 MFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQ 368
           +      L  L  L +      G IP  LS+  +L  L  + N+LSG +P  + +L  L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 369 YIIMPNNHLEGLIPVEFCQLDSL-QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQ 427
            I    N + G IP  +     L   + IS N ++G +P  F                  
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF----------------AN 196

Query: 428 LKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
           L         +L  +DLS N L G     
Sbjct: 197 L---------NLAFVDLSRNMLEGDASVL 216

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (324), Expect = 7e-34
 Identities = 68/341 (19%), Positives = 113/341 (33%), Gaps = 90/341 (26%)

Query: 40  LCSLVHLQELYIDNNDLRGS--LPWCLANMTSLRILDVSS-NQLTGSISSSPLVHLTSIE 96
                 +  L +   +L     +P  LAN+  L  L +   N L G I  + +  LT + 
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLH 104

Query: 97  ELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSS 154
            L +++ +    IP  L        L       N ++  +  S         +S L    
Sbjct: 105 YLYITHTNVSGAIPDFL---SQIKTLVTLDFSYNALSGTLPPS---------ISSLP--- 149

Query: 155 GYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLP 214
                           +L  +     +++G  P     + +KL                 
Sbjct: 150 ----------------NLVGITFDGNRISGAIPDSYG-SFSKLFT--------------- 177

Query: 215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 274
                    + IS N   G IP    ++  +L   + S N L+G     FG+ K  Q + 
Sbjct: 178 --------SMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 275 LSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIP 334
           L+ N L  ++ +       NL  L L NN +                         G +P
Sbjct: 228 LAKNSLAFDLGK--VGLSKNLNGLDLRNNRI------------------------YGTLP 261

Query: 335 QSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
           Q L++   L  L+++ N+L G IP+  GNL         NN
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (314), Expect = 2e-32
 Identities = 62/293 (21%), Positives = 115/293 (39%), Gaps = 44/293 (15%)

Query: 18  SMPSLKYLSLSDSN--SSRILDRGLCSLVHLQELYI-DNNDLRGSLPWCLANMTSLRILD 74
               +  L LS  N      +   L +L +L  LYI   N+L G +P  +A +T L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 75  VSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINA 132
           ++   ++G+I    L  + ++  L  S N     +P S+    +   L     + N+I+ 
Sbjct: 108 ITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSI---SSLPNLVGITFDGNRIS- 162

Query: 133 EITQSHSLIPPKF-QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 191
                   IP  +   S+L                        + +S  ++ G+ P    
Sbjct: 163 ------GAIPDSYGSFSKL---------------------FTSMTISRNRLTGKIPPTF- 194

Query: 192 ENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNN 251
             N  L  + +  + L G   +   S K  + + ++ N+    +  ++G    +L   + 
Sbjct: 195 -ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL-SKNLNGLDL 251

Query: 252 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN 304
             N + G++P     +KFL  L++S N+L GEIP+         +  A +NN 
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 31/132 (23%)

Query: 332 EIPQSLSKCSSL----EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEG--LIPVEF 385
           +I + L   ++L          N +  G +         +  + +   +L     IP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 386 CQLDSLQILDISD-NNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 444
             L  L  L I   NN+ G +P                              + L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 445 SYNRLNGSIPDW 456
           ++  ++G+IPD+
Sbjct: 109 THTNVSGAIPDF 120

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  188 bits (479), Expect = 1e-53
 Identities = 82/447 (18%), Positives = 153/447 (34%), Gaps = 18/447 (4%)

Query: 19  MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN 78
           + +L +L L+      I +    S   L  L +  N L       L+   +L+ L     
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 79  QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSH 138
            ++ SI   PL +  ++E L L +NH    I L   F   +LK    +NN I+     S 
Sbjct: 116 GIS-SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH---YLSK 170

Query: 139 SLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN-TKL 197
             +    Q + LSL+    D        +     + ++    +        L  +    L
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 198 IQLSVVNDSLAGPFRLPIHSHKQLRL--LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
              +  +               ++ +  +++  + F   I          L   + +   
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATH 289

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF- 314
           L   +PS    +  L+ L LS N     + +  A    +L  L++  N     + +    
Sbjct: 290 L-SELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 315 NLANLKLLQLEGNR--FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM 372
           NL NL+ L L  +           L   S L+ L+L+ N               L+ + +
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 373 PNNHLEGLIP-VEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHG--QL 428
               L+       F  L  L++L++S + +  S    F  L +++ ++L  N        
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 429 KRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           K  +      L  L LS+  L+     
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  169 bits (429), Expect = 1e-46
 Identities = 89/449 (19%), Positives = 154/449 (34%), Gaps = 27/449 (6%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            S + L  S +    I +     L++L  L +    +         +   L  L +++N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHS 139
           L   ++ + L    +++ L          I   P  N   L+  Y  +N I        S
Sbjct: 93  LI-FMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHI-------SS 143

Query: 140 LIPPKFQ----LSRLSLSS---GYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE 192
           +  PK      L  L   +    Y            Q     ++L+   + G  P     
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL--QQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEI-GDVLPSLYVFNN 251
              + +      + L     L   + + L L      +     P    G    S+   N 
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 252 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFS 311
             +       ++F     LQ LDL+  HL+ E+P  L  G   L+ L LS N  E     
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQI 319

Query: 312 RNFNLANLKLLQLEGNRFVGEI-PQSLSKCSSLEGLHLNNNSL--SGRIPRWLGNLTWLQ 368
              N  +L  L ++GN    E+    L    +L  L L+++ +  S      L NL+ LQ
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 369 YIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLP-ACFHPL-SIKQVHLSKNMLHG 426
            + +  N    L    F +   L++LD++   +      + F  L  +K ++LS ++L  
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 427 QLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
                 F    +L  L+L  N        
Sbjct: 440 -SSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  164 bits (418), Expect = 6e-45
 Identities = 83/464 (17%), Positives = 153/464 (32%), Gaps = 33/464 (7%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
              +LK+L    +  S I    L +   L+ LY+ +N +             L++LD  +
Sbjct: 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N +   +S   +  L     L L+ N   I       F+ +  +       Q    I + 
Sbjct: 163 NAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQH-DLEYVDLSHIKMNGEFPTWL------ 190
                 +  L   +     ++ ++   F       +E ++L                   
Sbjct: 222 LKNSTIQ-SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280

Query: 191 ----LENN------------TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGH 234
               L               + L +L +  +      ++   +   L  L I  N  R  
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 235 IPVEIGDVLPSLYVFNNSMNALDGS--IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGC 292
           +     + L +L   + S + ++ S        N+  LQ L+LS N       E     C
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-EC 399

Query: 293 VNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN 351
             LE L L+   L+       F NL  LK+L L  +       Q      +L+ L+L  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 352 SLSGRI---PRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPAC 408
                       L  L  L+ +++    L  +    F  L  +  +D+S N ++ S    
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 409 FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 452
              L    ++L+ N +   +        S   T++L  N L+ +
Sbjct: 520 LSHLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  128 bits (324), Expect = 3e-32
 Identities = 73/398 (18%), Positives = 132/398 (33%), Gaps = 31/398 (7%)

Query: 71  RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
           +  +  +  L       P     S E L  S N     I    F     L F      QI
Sbjct: 15  KTYNCENLGLN----EIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 131 NAEITQSHSLIPPKFQ----LSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEF 186
                  + +    FQ    L  L L++     +     L     L+++      ++   
Sbjct: 70  -------YWIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSID 121

Query: 187 PTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL 246
               L N   L  L + ++ ++          ++L++LD   N    ++  E    L   
Sbjct: 122 FI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQA 179

Query: 247 --YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA-VGCVNLESLALSNN 303
                N + N +   I     +    Q L+         I + L      +L      + 
Sbjct: 180 TNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 304 NLEG---HMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW 360
           + E     +F     + +++ + L+ + F      +    S L+ L L    LS  +P  
Sbjct: 239 DDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296

Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL-PACFHPL-SIKQVH 418
           L  L+ L+ +++  N  E L  +      SL  L I  N     L   C   L +++++ 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 419 LSKNMLHG-QLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           LS + +           N S L +L+LSYN       +
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (295), Expect = 2e-28
 Identities = 69/388 (17%), Positives = 123/388 (31%), Gaps = 60/388 (15%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
                L+ L L+ +     L  GL  L  L++L +  N          +N  SL  L + 
Sbjct: 275 HCFSGLQELDLT-ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQINAEIT 135
            N     + +  L +L ++ EL LS++  +          N S L+      N+      
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL---- 389

Query: 136 QSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 195
              SL    F+                         LE +DL+  ++  +      +N  
Sbjct: 390 ---SLKTEAFK----ECPQ-----------------LELLDLAFTRLKVKDAQSPFQNLH 425

Query: 196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
            L  L++ +  L             L+ L++  N+F                        
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK---------------------- 463

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFN 315
            +    +S   +  L+IL LS   L+  I +H       +  + LS+N L         +
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWL-QYIIMPN 374
           L  +  L L  N     +P  L   S    ++L  N L         +  +  ++     
Sbjct: 523 LKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC-----SNIYFLEWYKENM 576

Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNIS 402
             LE            L+ + +SD  +S
Sbjct: 577 QKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 27/111 (24%)

Query: 346 LHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL 405
            +  N  L+  IP  L      + +    N L  +    F +L +L  LD++   I    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-- 71

Query: 406 PACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
                                 +   TF +   L TL L+ N L       
Sbjct: 72  ----------------------IHEDTFQSQHRLDTLVLTANPLIFMAETA 100

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  189 bits (481), Expect = 2e-53
 Identities = 93/456 (20%), Positives = 162/456 (35%), Gaps = 24/456 (5%)

Query: 19  MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN 78
              L  L +  +  S++       L  L+ L + +N+L        A  T+L  L + SN
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 79  QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSH 138
            +   I ++P V   ++  L LS+N       L        L+     NN+I   +    
Sbjct: 108 SIQ-KIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ-ALKSEE 164

Query: 139 SLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE--NNTK 196
             I     L +L LSS        P   +    L  + L+++++       L     NT 
Sbjct: 165 LDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 197 LIQLSVVNDSLAGPFRLPIHS--HKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMN 254
           +  LS+ N  L+              L +LD+S NN            LP L  F    N
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYN 282

Query: 255 ALDGSIPSSFGNMKFLQILDLSNNHLTG--------EIPEHLAVGCVNLESLALSNNNLE 306
            +      S   +  ++ L+L  +            +I +        LE L + +N++ 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 307 GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS----KCSSLEGLHLNNNSLSGRIPRWLG 362
           G   +    L NLK L L  +        + +      S L  L+L  N +S        
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 363 NLTWLQYIIMPNNHLEGLIPV-EFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLS 420
            L  L+ + +  N +   +   E+  L+++  + +S N         F  + S++++ L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 421 KNMLHGQLKR-GTFFNCSSLVTLDLSYNRLNGSIPD 455
           +  L         F    +L  LDLS N +     D
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  179 bits (457), Expect = 4e-50
 Identities = 92/468 (19%), Positives = 172/468 (36%), Gaps = 36/468 (7%)

Query: 18  SMPSLKYLSLSDSNSSRILDR--GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
            + +L+ L LS++    +      + +   L++L + +N ++   P C   +  L  L +
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 76  SSNQLTGSISSSPLV--HLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQINA 132
           ++ QL  S++    +    TSI  L LSN+       +       + L       N +N 
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 133 EITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNG-------- 184
               S + +P   QL    L       + F   L+   ++ Y++L               
Sbjct: 263 VGNDSFAWLP---QLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 185 EFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD--- 241
           +   +  +    L  L++ ++ + G           L+ L +S N+F     +       
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVS 377

Query: 242 -VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL 300
                L++ N + N +      +F  +  L++LDL  N +  E+      G  N+  + L
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

Query: 301 SNNNLEGHMFSRNF-NLANLKLLQLEGNRF--VGEIPQSLSKCSSLEGLHLNNNSLSGRI 357
           S N     +   +F  + +L+ L L       V   P       +L  L L+NN+++   
Sbjct: 438 SYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 358 PRWLGNLTWLQYIIMPNNHLE--------GLIPVEFCQLDSLQILDISDNNISGSLPACF 409
              L  L  L+ + + +N+L         G        L  L IL++  N         F
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 410 HPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
             L  +K + L  N L+  L    F N  SL +L+L  N +       
Sbjct: 557 KDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (444), Expect = 2e-48
 Identities = 82/456 (17%), Positives = 162/456 (35%), Gaps = 50/456 (10%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            ++  L+L+ +   R+          L  L +  N +    P     +  L++L++  N+
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHS 139
           L+     +     T++ EL L +N  Q   +  PF     L      +N +        S
Sbjct: 85  LSQLSDKT-FAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGL-------SS 135

Query: 140 LIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWL-LENNTKLI 198
                       L +                 L+ + LS+ K+       L +  N+ L 
Sbjct: 136 TKLGTQV----QLEN-----------------LQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 199 QLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEI--GDVLPSLYVFNNSMNAL 256
           +L + ++ +        H+  +L  L ++       +  ++       S+   + S + L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 257 DGSIPSSFGNMKF--LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF 314
             +  ++F  +K+  L +LDLS N+L     +  A     LE   L  NN++        
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 315 NLANLKLLQLEGNRFVGEI---------PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLT 365
            L N++ L L+ +     I           S      LE L++ +N + G        L 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 366 WLQYIIMPNNHLEGLIPVE----FCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLS 420
            L+Y+ + N+                   L IL+++ N IS      F  L  ++ + L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
            N +  +L    +    ++  + LSYN+      + 
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  155 bits (394), Expect = 2e-41
 Identities = 76/410 (18%), Positives = 140/410 (34%), Gaps = 44/410 (10%)

Query: 16  GESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
           G    +L  L LS +N + + +     L  L+  +++ N+++      L  + ++R L++
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 76  SSNQLTGSIS--------SSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAEN 127
             +    SIS              L  +E L + +N     I    F     LK+    N
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSN 362

Query: 128 NQINAEITQSHSLIP-PKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEF 186
           +  +     + + +      L  L+L+      +           LE +DL   ++  E 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI-ESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 187 PTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL 246
                     + ++ +  +      R        L+ L +     +              
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV------------ 469

Query: 247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE 306
                       S PS F  ++ L ILDLSNN++     + L  G   LE L L +NNL 
Sbjct: 470 -----------DSSPSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQHNNLA 517

Query: 307 --------GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIP 358
                   G        L++L +L LE N F     +       L+ + L  N+L+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 359 RWLGNLTWLQYIIMPNNHLEGLIPVEFC-QLDSLQILDISDNNISGSLPA 407
               N   L+ + +  N +  +    F     +L  LD+  N    +  +
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (362), Expect = 3e-37
 Identities = 75/404 (18%), Positives = 138/404 (34%), Gaps = 54/404 (13%)

Query: 68  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAEN 127
            S  + D S  +LT      P    T+I  L L++N  +   +   F  +S+L       
Sbjct: 4   VSHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGF 58

Query: 128 NQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFP 187
           N I+        L P   Q                         L+ ++L H +++    
Sbjct: 59  NTIS-------KLEPELCQ---------------------KLPMLKVLNLQHNELSQ-LS 89

Query: 188 TWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLY 247
                  T L +L ++++S+      P    K L  LD+S N             L +L 
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQ 148

Query: 248 VFNNSMNALDGSIPSSFGNMKF--LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305
               S N +               L+ L+LS+N +    P         L  L L+N  L
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQL 207

Query: 306 EGHM---FSRNFNLANLKLLQLEGNRFVGEIPQSLS--KCSSLEGLHLNNNSLSGRIPRW 360
              +           +++ L L  ++       +    K ++L  L L+ N+L+      
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD---------ISDNNISGSLPACFHP 411
              L  L+Y  +  N+++ L       L +++ L+         IS  ++       F  
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 412 L-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
           L  ++ +++  N + G +K   F    +L  L LS +  +    
Sbjct: 328 LKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTL 370

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (312), Expect = 1e-30
 Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 33/240 (13%)

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
              + D S       +P ++     ++ V N + N L     ++F     L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
           ++   PE                             L  LK+L L+ N       ++ + 
Sbjct: 61  ISKLEPELCQ-------------------------KLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
           C++L  LHL +NS+             L  + + +N L         QL++LQ L +S+N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 400 NISGSLPACFHPL---SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
            I              S+K++ LS N +      G F     L  L L+  +L  S+ + 
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (264), Expect = 2e-24
 Identities = 63/363 (17%), Positives = 121/363 (33%), Gaps = 54/363 (14%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG----SLPWCLANMTSLRIL 73
            +  L++L++ D++   I       L++L+ L + N+        +  +     + L IL
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 74  DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAE 133
           +++ N+++  I S     L  +E L L  N     ++ + +     +   Y   N+    
Sbjct: 387 NLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-- 443

Query: 134 ITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNG-EFPTWLLE 192
                                                 L+ + L  + +   +      +
Sbjct: 444 --------------------------QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFR-------GHIPVEIGDVLPS 245
               L  L + N+++A      +   ++L +LD+  NN            P+     L  
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 246 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305
           L++ N   N  D      F ++  L+I+DL  N+L            V+L+SL L  N +
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN-NQVSLKSLNLQKNLI 596

Query: 306 EG---HMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLG 362
                 +F   F   NL  L +  N F          C S+       N     IP    
Sbjct: 597 TSVEKKVFGPAFR--NLTELDMRFNPFDCT-------CESIAWFVNWINETHTNIPELSS 647

Query: 363 NLT 365
           +  
Sbjct: 648 HYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 5e-19
 Identities = 44/273 (16%), Positives = 97/273 (35%), Gaps = 11/273 (4%)

Query: 16  GESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLP-WCLANMTSLRILD 74
             +   L  L+L+ +  S+I       L HL+ L +  N++   L       + ++  + 
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 75  VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQI--- 130
           +S N+      +S    + S++ LML     + +  S  PF     L      NN I   
Sbjct: 437 LSYNKYLQLTRNS-FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 131 -NAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW 189
            +  +     L     Q + L+    + +      FL     L  ++L     +   P  
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVE 554

Query: 190 LLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249
           + ++  +L  + +  ++L        ++   L+ L++  N          G    +L   
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 282
           +   N  D +  S      F+  ++ ++ ++  
Sbjct: 615 DMRFNPFDCTCESIAW---FVNWINETHTNIPE 644

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  180 bits (460), Expect = 7e-51
 Identities = 94/471 (19%), Positives = 159/471 (33%), Gaps = 63/471 (13%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           S P L+ L LS      I D    SL HL  L +  N ++       + ++SL+ L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
             L    +   + HL +++EL +++N  Q     E F N + L+     +N+I       
Sbjct: 110 TNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI------- 161

Query: 138 HSLIPPKFQ-LSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
            S+     + L ++ L                      +DLS   MN   P    E    
Sbjct: 162 QSIYCTDLRVLHQMPLL------------------NLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV-----LPSLYVFNN 251
            + L    DSL    +  I     L +  +    FR    +E  D      L +L +   
Sbjct: 204 KLTLRNNFDSLNVM-KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 252 SMNALDGS---IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGH 308
            +  LD     I   F  +  +    L +  +               + L L N      
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQF 319

Query: 309 MFSRNFNLANLKLLQLEGN---------------------RFVGEIPQSLSKCSSLEGLH 347
              +  +L  L     +G                       F G   QS    +SL+ L 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 348 LNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVE-FCQLDSLQILDISDNNISGSLP 406
           L+ N +   +      L  L+++   +++L+ +     F  L +L  LDIS  +   +  
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 407 ACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
             F+ L S++ + ++ N          F    +L  LDLS  +L    P  
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  174 bits (442), Expect = 2e-48
 Identities = 95/455 (20%), Positives = 180/455 (39%), Gaps = 29/455 (6%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQ----ELYIDNNDLRGSLPWCLANMTSLRIL 73
           ++ +L++L LS +    I    L  L  +      L +  N +    P     +  L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 74  DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHS--RLKFFYAENNQIN 131
            + +N  + ++  + +  L  +E   L    F+   +LE F   +   L     E  ++ 
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 132 AEITQSHSLIPPKFQ----LSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFP 187
             +      I   F     +S  SL S   + V    + +     ++++L + K    FP
Sbjct: 266 -YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF---GWQHLELVNCKFGQ-FP 320

Query: 188 TWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTN--NFRGHIPVEIGDVLPS 245
           T  L++  +L   S    +      LP      L  LD+S N  +F+G           S
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFG-TTS 374

Query: 246 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305
           L   + S N +  ++ S+F  ++ L+ LD  +++L       + +   NL  L +S+ + 
Sbjct: 375 LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 306 EGHMFSRNFNLANLKLLQLEGNRFVGEI-PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNL 364
                     L++L++L++ GN F     P   ++  +L  L L+   L    P    +L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 365 TWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL--SIKQVHLSKN 422
           + LQ + M +N+   L    +  L+SLQ+LD S N+I  S          S+  ++L++N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 423 MLHGQLKRGTFFN-CSSLVTLDLSYNRLNGSIPDW 456
                 +  +F         L +   R+  + P  
Sbjct: 554 DFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (294), Expect = 2e-28
 Identities = 42/258 (16%), Positives = 90/258 (34%), Gaps = 31/258 (12%)

Query: 202 VVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIP 261
                    +++P +     + LD+S N  R                             
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-------------------------HLGS 45

Query: 262 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL 321
            SF +   LQ+LDLS   +             +L +L L+ N ++         L++L+ 
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSL-SGRIPRWLGNLTWLQYIIMPNNHLEGL 380
           L              +    +L+ L++ +N + S ++P +  NLT L+++ + +N ++ +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 381 IPVEFCQLDSLQI----LDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNC 436
              +   L  + +    LD+S N ++   P  F  + + ++ L  N     + +      
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 437 SSLVTLDLSYNRLNGSIP 454
           + L    L          
Sbjct: 225 AGLEVHRLVLGEFRNEGN 242

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (253), Expect = 4e-23
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 11/191 (5%)

Query: 272 ILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG 331
                  +   +IP++L     + ++L LS N L        F+   L++L L       
Sbjct: 11  TYQCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
               +    S L  L L  N +          L+ LQ ++    +L  L       L +L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 392 QILDISDNNI-SGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSL----VTLDLS 445
           + L+++ N I S  LP  F  L +++ + LS N +   +          +    ++LDLS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLS 185

Query: 446 YNRLNGSIPDW 456
            N +N   P  
Sbjct: 186 LNPMNFIQPGA 196

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 2/115 (1%)

Query: 17  ESMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
             + SL+ L ++ ++     L      L +L  L +    L    P    +++SL++L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
           S N      +      L S++ L  S NH       E     S L F     N  
Sbjct: 502 SHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 26/110 (23%), Positives = 44/110 (40%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLAN 66
              +FL  I   + +L +L LS     ++      SL  LQ L + +N+      +    
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 67  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFN 116
           + SL++LD S N +  S         +S+  L L+ N F      + F  
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (431), Expect = 7e-47
 Identities = 72/450 (16%), Positives = 146/450 (32%), Gaps = 24/450 (5%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
            +  L  L L+ +            L  L+ L      L     + +  + +L+ L+V+ 
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N +      +   +LT++  + LS N+ Q  I++                +     I   
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT-- 195
                   +L  L+L   +         L +   L    L   +   E    + E +   
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 196 KLIQLSVVNDSLAGPFRLPIHSH-----KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250
            L  +++    L                  +  + ++  + +    V       SL +  
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR 316

Query: 251 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE--GH 308
             +            ++ FL+ L L+ N  +    +   V   +L  L LS N L   G 
Sbjct: 317 CQLKQF------PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGC 367

Query: 309 MFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW-LGNLTWL 367
               +    +L+ L L  N  +  +  +      L+ L   +++L          +L  L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 368 QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNMLH 425
            Y+ +   + +      F  L SL  L ++ N+   +  +    +  ++  + LSK  L 
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 426 GQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
             +  G F     L  L++S+N L      
Sbjct: 487 Q-ISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (400), Expect = 2e-42
 Identities = 88/451 (19%), Positives = 147/451 (32%), Gaps = 26/451 (5%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           +   L++L LS      I D+    L HL  L +  N ++   P   + +TSL  L    
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
            +L  S+ S P+  L ++++L +++N          F N + L       N I       
Sbjct: 114 TKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 138 -HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
              L         L +S    D        +    L  + L     +       L+N   
Sbjct: 173 LQFLRENPQVNLSLDMSLNPID--FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 197 LIQLSVVNDSLAGPFRLPIHSHK--------QLRLLDISTNNFRGHIPVEIGDVLPSLYV 248
           L    ++         L I             +    ++  N      V+    L ++  
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC-LANVSA 289

Query: 249 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGH 308
            + +  ++              Q L +    L       L      L+SL L+ N     
Sbjct: 290 MSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP----FLKSLTLTMNKGSI- 342

Query: 309 MFSRNFNLANLKLLQLEGNR--FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW 366
              +   L +L  L L  N   F G    S    +SL  L L+ N     +      L  
Sbjct: 343 -SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEE 400

Query: 367 LQYIIMPNNHLEGLIPVE-FCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNML 424
           LQ++   ++ L+ +     F  L+ L  LDIS  N        F  L S+  + ++ N  
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 425 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
                   F N ++L  LDLS  +L      
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  146 bits (371), Expect = 1e-38
 Identities = 85/449 (18%), Positives = 153/449 (34%), Gaps = 30/449 (6%)

Query: 17  ESMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRI--- 72
             + +LK L+++ +   S  L     +L +L  + +  N ++      L  +        
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 73  -LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN 131
            LD+S N +   I       +  + EL L  N     I      N + L        +  
Sbjct: 185 SLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 132 -----AEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEF 186
                     S         +    L+   +      KF    + +  + L+ + +    
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN-VSAMSLAGVSIKY-- 299

Query: 187 PTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL 246
               LE+  K  +   ++       + P      L+ L ++ N             LPSL
Sbjct: 300 ----LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK---KVALPSL 352

Query: 247 YVFNNSMNALDGSIPSSFGNMKF--LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN 304
              + S NAL  S   S+ ++    L+ LDLS N     I     +G   L+ L   ++ 
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHST 410

Query: 305 LEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPR-WLG 362
           L+       F +L  L  L +       +        +SL  L +  NS           
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 363 NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSK 421
           N T L ++ +    LE +    F  L  LQ+L++S NN+     + ++ L S+  +  S 
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 422 NMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
           N +    K        SL   +L+ N + 
Sbjct: 531 NRIET-SKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  133 bits (336), Expect = 6e-34
 Identities = 70/405 (17%), Positives = 135/405 (33%), Gaps = 23/405 (5%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW-CLA 65
           +  + LQ + E+      L +S  N    +       + L EL +  N    ++   CL 
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMS-LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 66  NMTSLRILDVSSNQLTG-----SISSSPLVHLTSIEELMLSNNHFQI-PISLEPFFNHSR 119
           N+  L +  +   +            S +  L  +        +       +  F   + 
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 120 LKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSH 179
           +         I          +P  F+   LS+              +    L+ + L+ 
Sbjct: 287 VSAMSLAGVSIK-----YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTM 337

Query: 180 IKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEI 239
            K +  F    L + + L  LS    S +G           LR LD+S N     I    
Sbjct: 338 NKGSISFKKVALPSLSYL-DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSAN 394

Query: 240 GDVLPSLYVFNNSMNALDGSIP-SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL 298
              L  L   +   + L      S+F +++ L  LD+S  +   +       G  +L +L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTL 453

Query: 299 ALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRI 357
            ++ N+ + +  S  F N  NL  L L   +              L+ L++++N+L    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 358 PRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
                 L  L  +    N +E    +      SL   ++++N+++
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (277), Expect = 4e-26
 Identities = 46/239 (19%), Positives = 86/239 (35%), Gaps = 16/239 (6%)

Query: 224 LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 283
                      +P +I     S    + S N L      SF N   LQ LDLS   +   
Sbjct: 16  YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 284 IPEHLAVGCVNLESLALSNNNLEG---HMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC 340
             +    G  +L +L L+ N ++      FS    L +L+ L     +        + + 
Sbjct: 72  EDKAWH-GLHHLSNLILTGNPIQSFSPGSFS---GLTSLENLVAVETKLASLESFPIGQL 127

Query: 341 SSLEGLHLNNNSLSG-RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQL----DSLQILD 395
            +L+ L++ +N +   ++P +  NLT L ++ +  N+++ +   +   L         LD
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 396 ISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
           +S N I       F  + + ++ L  N     + +    N + L    L          
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 8e-21
 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 18/207 (8%)

Query: 258 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEG---HMFSRNF 314
           GS+      +  +      +  L+ ++P+ +     + +++ LS N L+    + FS   
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFS--- 53

Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
           N + L+ L L          ++      L  L L  N +    P     LT L+ ++   
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISG-SLPACFHPL-SIKQVHLSKNMLHGQLKRGT 432
             L  L      QL +L+ L+++ N I    LPA F  L ++  V LS N +   +    
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVND 172

Query: 433 FFN----CSSLVTLDLSYNRLNGSIPD 455
                      ++LD+S N ++     
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQ 199

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 37/191 (19%), Positives = 69/191 (36%), Gaps = 11/191 (5%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRG-LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
             +  L++L    S   R+ +     SL  L  L I   + +         +TSL  L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEIT 135
           + N    +  S+   + T++  L LS    +  IS   F    RL+     +N +    +
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 136 QSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSH-----IKMNGEFPTWL 190
              S     + LS L  S    +        +    L + +L++     I  + +F  W+
Sbjct: 515 ---SHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570

Query: 191 LENNTKLIQLS 201
            E    L+ + 
Sbjct: 571 KEQKQFLVNVE 581

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  166 bits (423), Expect = 5e-45
 Identities = 71/441 (16%), Positives = 138/441 (31%), Gaps = 39/441 (8%)

Query: 40  LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
           L +   +  L +     +G +P  +  +T L++L   ++  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQ-LSRLSLSSGYED 158
              +  ++           RL       + IN    +   +       L    + +    
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSH 218
                K +     L+ +  ++     +               +           L   + 
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNL 490

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG---------SIPSSFGNMKF 269
           K L  +++        +P  + D LP L   N + N              +         
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329
           +QI  +  N+L            V L  L   +N +             L  L+L+ N+ 
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQI 607

Query: 330 VGEIPQSL-SKCSSLEGLHLNNNSLSGRIPRW--LGNLTWLQYIIMPNNHLEGLIPVEFC 386
             EIP+   +    +EGL  ++N L   IP      ++  +  +    N +        C
Sbjct: 608 E-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 387 QLD-----SLQILDISDNNISGSLPACFHPL-SIKQVHLSKNML------HGQLKRGTFF 434
            +D     +   + +S N I       F     I  + LS N++        + K G + 
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 435 NCSSLVTLDLSYNRLNGSIPD 455
           N   L T+DL +N+L  S+ D
Sbjct: 726 NTYLLTTIDLRFNKLT-SLSD 745

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  155 bits (394), Expect = 3e-41
 Identities = 76/512 (14%), Positives = 148/512 (28%), Gaps = 81/512 (15%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWC-------------- 63
           +   +  LSL+   +   +   +  L  L+ L    +    S                  
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 64  -----------LANMTSLRILDVSSNQLTGSISSSPLVHLT--SIEELMLSNNHFQIPIS 110
                      L     L + D+  + +  +    P+   +  S+++  + N   +I   
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 111 LEPFFNHSRLKFFYAENNQINAEITQSHSL------------IPPKF----QLSRLSLSS 154
            +     ++L+  Y  N+    +                       +     L+ + L +
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 155 GYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWL--------LENNTKLIQLSVVNDS 206
                   P FLY   +L+ ++++  +                  +   K+    +  ++
Sbjct: 501 CPNMT-QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 207 LAG-PFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFG 265
           L   P    +    +L LLD   N  R H+    G     L       N ++        
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLTDLKLDYNQIEEIPEDFCA 616

Query: 266 NMKFLQILDLSNNHLTGEIPEHLAVG-CVNLESLALSNNNLEGH-----MFSRNFNLANL 319
               ++ L  S+N L   IP          + S+  S N +            ++   N 
Sbjct: 617 FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 320 KLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS-------GRIPRWLGNLTWLQYIIM 372
             + L  N       +  +  S +  + L+NN ++               N   L  I +
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 373 PNNHLEGLIP-VEFCQLDSLQILDISDNNISGSLPACFHPLS-------IKQVHLSKNML 424
             N L  L        L  L  +D+S N  S S P      S         Q     N +
Sbjct: 736 RFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRI 794

Query: 425 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
             Q        C SL+ L +  N +   + + 
Sbjct: 795 LRQWPT-GITTCPSLIQLQIGSNDIR-KVDEK 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (383), Expect = 9e-40
 Identities = 65/435 (14%), Positives = 122/435 (28%), Gaps = 88/435 (20%)

Query: 19  MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG---------SLPWCLANMTS 69
           +  L  + L +  +   L   L  L  LQ L I  N              L         
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 70  LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQ 129
           ++I  +  N L    +S+ L  +  +  L   +N  +    LE F  + +L     + NQ
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQ 606

Query: 130 INAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW 189
           I          IP  F                          +E +  SH K+      +
Sbjct: 607 IEE--------IPEDF--------------------CAFTDQVEGLGFSHNKLKYIPNIF 638

Query: 190 LLENNTKLIQLSVVNDSLAG-----PFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLP 244
             ++   +  +    + +          +  +       + +S N  +   P E+     
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGS 697

Query: 245 SLYVFNNSMNALD-------GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLES 297
            +     S N +             ++ N   L  +DL  N LT    +  A     L +
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 298 LALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHL------NNN 351
           + +S N                              P      S L+   +        N
Sbjct: 758 MDVSYNCFS-------------------------SFPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI-SGSLPACFH 410
            +  + P  +     L  + + +N +   +  +      L ILDI+DN   S  + +   
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCP 849

Query: 411 PLSIKQVHLSKNMLH 425
            +      L  +   
Sbjct: 850 YIEAGMYVLLYDKTQ 864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  163 bits (415), Expect = 2e-44
 Identities = 72/479 (15%), Positives = 155/479 (32%), Gaps = 75/479 (15%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG----SLPWCLANMTSLRIL 73
           S   +  LSL    +S  +   +  L  L+ L + ++  +       P  ++   S    
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 74  DVSSNQLTGSI-SSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN- 131
                    +     P    + + +  ++++  Q  I         +       +N I  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQLSNNITF 197

Query: 132 --AEITQSHSLI-----------PPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLS 178
               + +   L                +      S   +   T      +  DL  V++ 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 179 HIKMNGEFPTWL----------LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDIST 228
           +     + PT+L          +  N + I    + D        P+   ++++++ I  
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALADAPVG--EKIQIIYIGY 314

Query: 229 NNFR-GHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH 287
           NN +   +   +   +  L +     N L+G +P+ FG+   L  L+L+ N +T  IP +
Sbjct: 315 NNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPAN 371

Query: 288 LAVGCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVG-------EIPQSLSK 339
                  +E+L+ ++N L+      +  +++ +  +    N            +  +  K
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL-------IPVEFCQLDSLQ 392
             ++  ++L+NN +S          + L  I +  N L  +           F     L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 393 ILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451
            +D+  N ++  L   F                             LV +DLSYN  + 
Sbjct: 492 SIDLRFNKLT-KLSDDF----------------------RATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  155 bits (395), Expect = 1e-41
 Identities = 67/435 (15%), Positives = 127/435 (29%), Gaps = 70/435 (16%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            + +  +   +   +  D    +L  L ++ + N      LP  L  +  +++++V+ N+
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 80  LTGSISS-------SPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQIN 131
                         +       I+ + +  N+ +  P+         +L       NQ+ 
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYNQLE 343

Query: 132 AEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMN--GEFPTW 189
                      P F     S                    L  ++L++   N   E P  
Sbjct: 344 G--------KLPAFG----SEIK-----------------LASLNLAY---NQITEIPAN 371

Query: 190 LLENNTKLIQLSVVNDSLAG-PFRLPIHSHKQLRLLDISTNNFRG-------HIPVEIGD 241
                 ++  LS  ++ L   P      S   +  +D S N            +      
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV------GCVNL 295
              ++   N S N +       F     L  ++L  N LT      L            L
Sbjct: 432 -GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 296 ESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN---- 350
            S+ L  N L           L  L  + L  N F  + P      S+L+G  + N    
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 351 --NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG-SLPA 407
             N      P  +     L  + + +N +   +  +     ++ +LDI DN      L  
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606

Query: 408 CFHPLSIKQVHLSKN 422
               +      L  +
Sbjct: 607 VCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  154 bits (390), Expect = 4e-41
 Identities = 53/413 (12%), Positives = 126/413 (30%), Gaps = 57/413 (13%)

Query: 64  LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFF 123
           L +   +  L +     +G +  + +  LT +E L L ++  ++   L      S     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 124 YAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMN 183
             +               P      R   S                 DL    ++     
Sbjct: 136 EQKQKMRMHYQKTFVDYDP------REDFS-----------------DLIKDCINSDPQQ 172

Query: 184 GEFPTWLLENNTKLIQLSVVNDSLAGPFRLP--IHSHKQLRLLDISTNNFRGHIPVEIGD 241
                       K  Q+  +++++     +   +    +LR   +  + F      E  +
Sbjct: 173 KSIKK-SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS 301
                   N+       +    + N+K L  +++ N     ++P  L      ++ + ++
Sbjct: 229 NE------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVA 281

Query: 302 NNNL--------EGHMFSRNFNLANLKLLQLEGNRF-VGEIPQSLSKCSSLEGLHLNNNS 352
            N          +    +       ++++ +  N      +  SL K   L  L    N 
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 353 LSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL 412
           L G      G+   L  + +  N +  +        + ++ L  + N +   +P  F   
Sbjct: 342 LEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK 399

Query: 413 SIKQ---VHLSKNMLHGQLKRG------TFFNCSSLVTLDLSYNRLNGSIPDW 456
           S+     +  S N +     +       T F   ++ +++LS N+++    + 
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  143 bits (363), Expect = 2e-37
 Identities = 64/408 (15%), Positives = 128/408 (31%), Gaps = 77/408 (18%)

Query: 18  SMPSLKYLSLSD--------SNSSRILDRGLCSLVHLQELYIDNNDLR-GSLPWCLANMT 68
           ++P ++ ++++                         +Q +YI  N+L+   +   L  M 
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330

Query: 69  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAEN 127
            L +L+   NQL G + +        +  L L+ N    IP +        +++     +
Sbjct: 331 KLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANF--CGFTEQVENLSFAH 386

Query: 128 NQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFP 187
           N++          IP  F    +S                    +  +D S+        
Sbjct: 387 NKL--------KYIPNIFDAKSVS-------------------VMSAIDFSY-------- 411

Query: 188 TWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLY 247
                 N    ++  V+     P          +  +++S N        E+      L 
Sbjct: 412 ------N----EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLS 460

Query: 248 VFNNSMNALDG-------SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL 300
             N   N L             +F N   L  +DL  N LT    +  A     L  + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 301 SNNNLEGHMFSRNFNLANLKLLQLE------GNRFVGEIPQSLSKCSSLEGLHLNNNSLS 354
           S N+      ++  N + LK   +       GNR + E P+ ++ C SL  L + +N + 
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 355 GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
             +   +     +  + + +N    +     C      +  +  +   
Sbjct: 580 K-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (269), Expect = 4e-25
 Identities = 25/223 (11%), Positives = 66/223 (29%), Gaps = 13/223 (5%)

Query: 240 GDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA 299
           G    + + FN  ++        S  +   +  L L     +G +P+ +      LE LA
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLA 111

Query: 300 LSNNNLEGHMFSRNF----NLANLKLLQLEGNRFVGEIPQSLSK--CSSLEGLHLNNNSL 353
           L ++  + +             + +  Q     +         +   S L    +N++  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 354 SGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS 413
              I +          I   +N++   +     +L  L+   + ++             +
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI----CEA 226

Query: 414 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
            +  +      +       + N   L  +++        +P +
Sbjct: 227 WENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTF 268

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (384), Expect = 8e-40
 Identities = 84/466 (18%), Positives = 163/466 (34%), Gaps = 49/466 (10%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
             +  L+ L L    +   +D+    +L +L+ L + ++ +    P     +  L  L +
Sbjct: 45  PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104

Query: 76  SSNQLT-GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEI 134
               L+   +      +L ++  L LS N  +       F   + LK     +NQI   +
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LV 163

Query: 135 TQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN 194
            +          LS  SL++          +    +    + L  +         +  N 
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD--------VSGNG 215

Query: 195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEI--GDVLPSLYVFNNS 252
             +      +++++      +     +       +N +         G    S+   + S
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLS 274

Query: 253 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSR 312
              +       F  +K L++L+L+ N +  +I +    G  NL+ L LS N L   ++S 
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSS 332

Query: 313 NF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII 371
           NF  L  +  + L+ N       Q+      L+ L L +N+L+      +  +  +  I 
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIF 387

Query: 372 MPNNHLEGLIPVE---------------------FCQLDSLQILDISDNNISGSLPACF- 409
           +  N L  L  +                        ++  LQIL ++ N  S        
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 410 -HPLSIKQVHLSKNMLHG----QLKRGTFFNCSSLVTLDLSYNRLN 450
               S++Q+ L +NML      +L    F   S L  L L++N LN
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (358), Expect = 2e-36
 Identities = 87/459 (18%), Positives = 166/459 (36%), Gaps = 38/459 (8%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL--PWCLANMTSLRILDV 75
           ++P+L+ L L  S    +       L HL EL +    L  ++       N+ +L  LD+
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQINAEI 134
           S NQ+           L S++ +  S+N    +            L FF    N + + +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 135 TQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN 194
           +         F+   L +     +G T        + +       + +           +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 195 ---------------TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEI 239
                          + +  L + +  +         + K L++L+++ N     I  E 
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEA 309

Query: 240 GDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA 299
              L +L V N S N L     S+F  +  +  +DL  NH+   I +        L++L 
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLD 368

Query: 300 LSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG-RIP 358
           L +N L     +    + ++  + L GN+ V     +L+       +HL+ N L    I 
Sbjct: 369 LRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDIL 419

Query: 359 RWLGNLTWLQYIIMPNNHLEGLIPVEFCQ-LDSLQILDISDNNISGSLPACFHPLSIKQV 417
            +L  +  LQ +I+  N        +      SL+ L + +N +  +          + +
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 418 ------HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
                 +L+ N L+  L  G F + ++L  L L+ NRL 
Sbjct: 480 SHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  131 bits (330), Expect = 7e-33
 Identities = 83/439 (18%), Positives = 150/439 (34%), Gaps = 55/439 (12%)

Query: 43  LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
           L   + L +  N +R         +  L++L++ S     +I      +L ++  L L +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 103 NHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF 162
           +     +  + F     L         ++  + +       K  L+RL LS      +  
Sbjct: 83  SKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYL 140

Query: 163 PKFLYHQHDLEYVDLSHIKM------------NGEFPTWLLENNTKLIQLSVVNDSLAGP 210
                  + L+ +D S  ++                  + L  N+   ++SV       P
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 211 FRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFL 270
           FR     +  L +LD+S N +   I               N  NA+  S   S      +
Sbjct: 201 FR-----NMVLEILDVSGNGWTVDIT-------------GNFSNAISKSQAFSLILAHHI 242

Query: 271 QILDLSNNHLTGEIPEHLAVGC-VNLESLALSNNNL---EGHMFSRNFNLANLKLLQLEG 326
                  +++        A     ++  L LS+  +      +F     L +LK+L L  
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE---TLKDLKVLNLAY 299

Query: 327 NRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFC 386
           N+      ++     +L+ L+L+ N L          L  + YI +  NH+  +    F 
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 387 QLDSLQILDISDNNIS-----GSLPACF-----------HPLSIKQVHLSKNMLHGQLKR 430
            L+ LQ LD+ DN ++      S+P  F             L+   +HLS+N L      
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419

Query: 431 GTFFNCSSLVTLDLSYNRL 449
                   L  L L+ NR 
Sbjct: 420 YFLLRVPHLQILILNQNRF 438

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  105 bits (264), Expect = 2e-24
 Identities = 81/474 (17%), Positives = 164/474 (34%), Gaps = 50/474 (10%)

Query: 3   TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSL--VHLQELYIDNNDLRGSL 60
             + L+ SF       + SLK +  S +    + +  L  L    L    +  N L   +
Sbjct: 136 RSLYLHPSF-----GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 61  PWCLANM------TSLRILDVSSNQLT-----------GSISSSPLVHLTSIEELMLSNN 103
                          L ILDVS N  T               +  L+    I       +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 104 HFQ-IPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF 162
           + +    +       S ++     +  +    + +  +      L  L+L+    + +  
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVF---SLNSRVFETLKDLKVLNLAYNKINKIA- 306

Query: 163 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLR 222
            +  Y   +L+ ++LS+  +  E  +       K+  + +  + +A          ++L+
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 223 LLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 282
            LD+  N       +     +P +++  N +  L     +         ++ LS N L  
Sbjct: 366 TLDLRDNALTT---IHFIPSIPDIFLSGNKLVTLPKINLT-------ANLIHLSENRLEN 415

Query: 283 EIPEHLAVGCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSK-- 339
               +  +   +L+ L L+ N        +      +L+ L L  N         L    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 340 ---CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396
               S L+ L+LN+N L+   P    +LT L+ + + +N L  L   +     +L+ILDI
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDI 533

Query: 397 SDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
           S N +    P  F  L    + ++ N    + +  TF N  +   + ++    +
Sbjct: 534 SRNQLLAPNPDVFVSL--SVLDITHNKFICECELSTFINWLNHTNVTIAGPPAD 585

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  104 bits (262), Expect = 4e-24
 Identities = 71/405 (17%), Positives = 134/405 (33%), Gaps = 52/405 (12%)

Query: 16  GESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
           G +  S+++L LS      +  R   +L  L+ L +  N +          + +L++L++
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEIT 135
           S N L   + SS    L  +  + L  NH  I I  + F    +L+     +N +     
Sbjct: 322 SYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALT---- 375

Query: 136 QSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 195
                                         ++    +  + LS  K+       L  N  
Sbjct: 376 -----------------------------TIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406

Query: 196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
            L +  + N  +             L++L ++ N F      +     PSL       N 
Sbjct: 407 HLSENRLENLDILYFLL----RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 256 LDGSIPSS-----FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF 310
           L  +  +      F  +  LQ+L L++N+L   +P  +      L  L+L++N L   + 
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRL--TVL 519

Query: 311 SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIP-RWLGNLTWLQY 369
           S N   ANL++L +  N+ +   P       SL  L + +N            N      
Sbjct: 520 SHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTN 576

Query: 370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSI 414
           + +       +  V       + +  +S               S+
Sbjct: 577 VTIAGPP-ADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL 620

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 40/254 (15%), Positives = 84/254 (33%), Gaps = 34/254 (13%)

Query: 222 RLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 281
           R+      N    +P     VL +      S N +     SSF  ++ LQ+L+L + +  
Sbjct: 7   RIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 282 GEIPEHLAVGCVNLESLALSNNN---LEGHMFSRNFNLANLKLLQLEGNRFVGEI--PQS 336
             I +       NL  L L ++    L    F     L +L  L+L        +     
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ---GLFHLFELRLYFCGLSDAVLKDGY 118

Query: 337 LSKCSSLEGLHLNNNSLSG-RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD--SLQI 393
                +L  L L+ N +    +    G L  L+ I   +N +  +   E   L   +L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 394 LDISDNNISGSLPACF-------HPLSIKQVHLSKNMLH-----------GQLKRGTFFN 435
             ++ N++   +   +         + ++ + +S N               + +  +   
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 436 CSSLVTLDLSYNRL 449
              ++     ++ +
Sbjct: 239 AHHIMGAGFGFHNI 252

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 388 LDSLQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 446
           L++ + L +S N I     + F  L  ++ + L        + +  F N  +L  LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 447 NRLNGSIPDW 456
           +++    PD 
Sbjct: 83  SKIYFLHPDA 92

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (375), Expect = 3e-39
 Identities = 85/452 (18%), Positives = 156/452 (34%), Gaps = 26/452 (5%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           +S+  L  L L+ +    +       L  LQ+L     +L     + + ++ +L+ L+V+
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
            N +          +LT++E L LS+N  Q  I         ++       +     +  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNG-----EFPTWLL 191
                  + +L +L+L + ++        +     LE   L   +        +F    L
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 192 ENNTKLIQLS---VVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYV 248
           E    L          D          +    +    + +                 L +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 249 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGH 308
            N                +K L+ L  ++N       E   V   +LE L LS N L   
Sbjct: 312 VNCKFGQF------PTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 362

Query: 309 MFSRN--FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW-LGNLT 365
                  F   +LK L L  N  +  +  +      LE L   +++L          +L 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 366 WLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA-CFHPL-SIKQVHLSKNM 423
            L Y+ + + H        F  L SL++L ++ N+   +     F  L ++  + LS+  
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 424 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           L  QL    F + SSL  L+++ N+L  S+PD
Sbjct: 482 LE-QLSPTAFNSLSSLQVLNMASNQLK-SVPD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (366), Expect = 5e-38
 Identities = 84/446 (18%), Positives = 169/446 (37%), Gaps = 25/446 (5%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           S P L+ L LS      I D    SL HL  L +  N ++       + ++SL+ L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
             L  S+ + P+ HL +++EL +++N  Q     E F N + L+     +N+I   I  +
Sbjct: 110 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 197
              +  +  L  LSL              + +  L  + L +   +       ++    L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 198 IQLSVVNDSLAGPFRLPIHS--------HKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249
               +V         L            +  +    ++  ++     +++ + L ++  F
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 250 NNSMNALDGSIPSSF-GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGH 308
           +     ++     S+    + L++++               +   +L+ L  ++N     
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-------TLKLKSLKRLTFTSNKG--G 338

Query: 309 MFSRNFNLANLKLLQLEGNR--FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW 366
                 +L +L+ L L  N   F G   QS    +SL+ L L+ N +   +      L  
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 367 LQYIIMPNNHLEGLIPVE-FCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNML 424
           L+++   +++L+ +     F  L +L  LDIS  +   +    F+ L S++ + ++ N  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 425 HGQLKRGTFFNCSSLVTLDLSYNRLN 450
                   F    +L  LDLS  +L 
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  121 bits (306), Expect = 4e-30
 Identities = 79/400 (19%), Positives = 148/400 (37%), Gaps = 22/400 (5%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQ----ELYIDNNDLRGSLPWCLANMTSLRIL 73
           ++ +L++L LS +    I    L  L  +      L +  N +    P     +  L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 74  DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI-----PISLEPFFNHSRLKFFYAENN 128
            + +N  + ++  + +  L  +E   L    F+                  L        
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 129 QINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPT 188
            ++  +     L      +S  SL S   + V    + +    LE V+        +FPT
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG----QFPT 321

Query: 189 WLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRG-HIPVEIGDVLPSLY 247
             L++  +L   S    +      LP      L  LD+S N         +      SL 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 248 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEG 307
             + S N +  ++ S+F  ++ L+ LD  +++L       + +   NL  L +S+ +   
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 308 HMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW 366
                   L++L++L++ GN F         ++  +L  L L+   L    P    +L+ 
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 367 LQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLP 406
           LQ + M +N L+ +    F +L SLQ + +  N    S P
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 11/183 (6%)

Query: 274 DLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEI 333
                +   +IP++L     + ++L LS N L        F+   L++L L         
Sbjct: 13  QCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 334 PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393
             +    S L  L L  N +          L+ LQ ++    +L  L       L +L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 394 LDISDNNI-SGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSL----VTLDLSYN 447
           L+++ N I S  LP  F  L +++ + LS N +   +          +    ++LDLS N
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 448 RLN 450
            +N
Sbjct: 188 PMN 190

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (332), Expect = 9e-35
 Identities = 75/381 (19%), Positives = 132/381 (34%), Gaps = 36/381 (9%)

Query: 22  LKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81
              L+   +  ++I       L       +    +   +      + S+  L V+  ++ 
Sbjct: 2   AATLATLPAPINQI--FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 82  GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLI 141
              S   + +LT++E L L+ N       + P  N  +L   Y   N+I        + I
Sbjct: 58  ---SIQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKI--------TDI 103

Query: 142 PPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLS 201
                L+ L      ED ++    L +   +  ++L       +     L N T L  L+
Sbjct: 104 SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLT 161

Query: 202 VVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIP 261
           V    +      PI +   L  L ++ N      P+     L     + N +  +     
Sbjct: 162 VTESKVKDVT--PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI----- 214

Query: 262 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL 321
           +   NM  L  L + NN +T   P         L  L +  N +     +   +L  LK+
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKM 269

Query: 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI 381
           L +  N+        L+  S L  L LNNN L       +G LT L  + +  NH+  + 
Sbjct: 270 LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 382 PVEFCQLDSLQILDISDNNIS 402
           P     L  +   D ++  I 
Sbjct: 328 P--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (268), Expect = 8e-26
 Identities = 68/385 (17%), Positives = 129/385 (33%), Gaps = 58/385 (15%)

Query: 70  LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQ 129
              L      +       P   L      +L        ++ E       +        +
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAGEK 55

Query: 130 INAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW 189
           +                                 + + +  +LEY++L+  ++    P  
Sbjct: 56  V------------------------------ASIQGIEYLTNLEYLNLNGNQITDISP-- 83

Query: 190 LLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249
            L N  KL  L +  + +       + +   LR L ++ +N     P+     L  +Y  
Sbjct: 84  -LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPLAN---LTKMYSL 137

Query: 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHM 309
           N   N    S  S   NM  L  L ++ + +    P        +L SL+L+ N +E   
Sbjct: 138 NLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIA---NLTDLYSLSLNYNQIED-- 191

Query: 310 FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQY 369
            S   +L +L       N+     P  ++  + L  L + NN ++   P  L NL+ L +
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247

Query: 370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLK 429
           + +  N +  +       L  L++L++  N IS  +    +   +  + L+ N L     
Sbjct: 248 LEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DISVLNNLSQLNSLFLNNNQLGN-ED 303

Query: 430 RGTFFNCSSLVTLDLSYNRLNGSIP 454
                  ++L TL LS N +    P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           + +  LK L++  +  S I    L +L  L  L+++NN L       +  +T+L  L +S
Sbjct: 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNH 104
            N +T      PL  L+ ++    +N  
Sbjct: 320 QNHIT---DIRPLASLSKMDSADFANQV 344

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (340), Expect = 1e-34
 Identities = 86/452 (19%), Positives = 159/452 (35%), Gaps = 30/452 (6%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG-SLPWCLANMTSLRILDV 75
            S+ SL++L LSD++ S +       L  L+ L +  N  +   +     N+T+L+ L +
Sbjct: 71  YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN---- 131
            + +    I       LTS+ EL +     +     +   +   +       ++      
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 132 ---AEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPT 188
                ++    L      L+R   S    D V+ P            D S  ++      
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 189 WL------LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV 242
            L       ++ T                 L       +R L I    +  +    +  +
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLSTVYSL 308

Query: 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV--GCVNLESLAL 300
           L  +       + +     S   ++K L+ LDLS N +  E  ++ A      +L++L L
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 301 SNNNLE--GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIP 358
           S N+L            L NL  L +  N F   +P S      +  L+L++  +   + 
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVK 426

Query: 359 RWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVH 418
                   L+ + + NN+L+         L  LQ L IS N +  +LP       +  + 
Sbjct: 427 T--CIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPDASLFPVLLVMK 479

Query: 419 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
           +S+N L   +  G F   +SL  + L  N  +
Sbjct: 480 ISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (258), Expect = 7e-24
 Identities = 58/383 (15%), Positives = 119/383 (31%), Gaps = 44/383 (11%)

Query: 69  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENN 128
           +  + D  S   T    S P     +++ L LS N     I        + L+    +++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 129 QINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPT 188
           +I        + I                    F    Y    LE++DLS   ++    +
Sbjct: 61  RI--------NTIEGD----------------AF----YSLGSLEHLDLSDNHLS-SLSS 91

Query: 189 WLLENNTKLIQLSVVNDSLAG-PFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLY 247
                 + L  L+++ +            +   L+ L I        I       L SL 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 248 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEG 307
                  +L      S  +++ +  L L  +     + E  A    ++  L L + NL  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

Query: 308 HMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWL 367
             FS          ++    R      +S ++   L    L  + +         + T  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLN 264

Query: 368 QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHG 426
                  +  + +  +   +  +++ L I    +   L   +  L  +K++ +  + +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323

Query: 427 QLKRGTFFNCSSLVTLDLSYNRL 449
            +      +  SL  LDLS N +
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 42/237 (17%), Positives = 78/237 (32%), Gaps = 15/237 (6%)

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
              + D  + +F   IP  +     ++   + S N +             LQ+L L ++ 
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFNLANLKLLQLEGNRFVG-EIPQ 335
           +   I         +LE L LS+N+L       F     L++LK L L GN +    +  
Sbjct: 62  IN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG---PLSSLKYLNLMGNPYQTLGVTS 117

Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRW-LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQIL 394
                ++L+ L + N      I R     LT L  + +    L          +  +  L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 395 DISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
            +  +  +  L      L S++ + L    L    +            +     R +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGS 233

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 6e-13
 Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 5/164 (3%)

Query: 289 AVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHL 348
           ++ C         + +    + S     A +K L L  N+        L  C++L+ L L
Sbjct: 1   SLSCDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 349 NNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG-SLPA 407
            ++ ++        +L  L+++ + +NHL  L    F  L SL+ L++  N      + +
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 408 CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
            F  L +++ + +       +++R  F   +SL  L++    L 
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 68/305 (22%)

Query: 4   RIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWC 63
             + +    ++      +++ L +        L      L  ++ + ++N+ +       
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329

Query: 64  LANMTSLRILDVSSNQLT--GSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRL 120
             ++ SL  LD+S N +      +S+      S++ L+LS NH + +  + E       L
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 121 KFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI 180
                  N  +                               P        + +++LS  
Sbjct: 390 TSLDISRNTFH-----------------------------PMPDSCQWPEKMRFLNLSS- 419

Query: 181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIG 240
                          +++              +P    + L +LD+S NN      + + 
Sbjct: 420 ------------TGIRVV-----------KTCIP----QTLEVLDVSNNNLD-SFSLFLP 451

Query: 241 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL 300
             L  LY+  N +  L             L ++ +S N L   +P+ +     +L+ + L
Sbjct: 452 R-LQELYISRNKLKTL-----PDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWL 504

Query: 301 SNNNL 305
             N  
Sbjct: 505 HTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 48/349 (13%), Positives = 100/349 (28%), Gaps = 66/349 (18%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLAN 66
           +     +    +  S   L         + +              + ++           
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 67  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAE 126
             ++R L +    L     S+    L  ++ + + N+   + +      +   L+F    
Sbjct: 285 TVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLS 342

Query: 127 NNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEF 186
            N +  E  ++ +                                L+ + LS        
Sbjct: 343 ENLMVEEYLKNSA-------------------------CKGAWPSLQTLVLSQ------- 370

Query: 187 PTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV--LP 244
                     L  +    + L           K L  LDIS N F   +P        + 
Sbjct: 371 --------NHLRSMQKTGEILLT--------LKNLTSLDISRNTFH-PMPDSCQWPEKMR 413

Query: 245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN 304
            L + +  +  +   IP +      L++LD+SNN+L       L      L+ L +S N 
Sbjct: 414 FLNLSSTGIRVVKTCIPQT------LEVLDVSNNNLD-SFSLFL----PRLQELYISRNK 462

Query: 305 LEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSL 353
           L             L ++++  N+          + +SL+ + L+ N  
Sbjct: 463 L--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (320), Expect = 2e-32
 Identities = 91/455 (20%), Positives = 166/455 (36%), Gaps = 67/455 (14%)

Query: 2   STRIALNTSFLQIIG-ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL 60
           S  I  +T   QI    ++       L  +N +  +      L  +  L  D   ++ S+
Sbjct: 5   SATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SI 61

Query: 61  PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRL 120
              +  + +L  ++ S+NQLT     +PL +LT + +++++NN       + P  N + L
Sbjct: 62  D-GVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIA---DITPLANLTNL 114

Query: 121 KFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI 180
                 NNQI        + I P   L+ L+      + ++    L     L+ +   + 
Sbjct: 115 TGLTLFNNQI--------TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN- 165

Query: 181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIG 240
           ++    P   L N T L +L + ++ ++      +     L  L  + N      P+   
Sbjct: 166 QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG-- 218

Query: 241 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL 300
            +L +L   + + N L      +  ++  L  LDL+NN ++   P     G   L  L L
Sbjct: 219 -ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKL 272

Query: 301 SNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW 360
             N +     S    L  L  L+L  N+     P  +S   +L  L L  N++S   P  
Sbjct: 273 GANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326

Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLS 420
           + +LT LQ +   NN +  +       L ++  L    N IS   P              
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP-------------- 370

Query: 421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
                         N + +  L L+      +  +
Sbjct: 371 ------------LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (320), Expect = 3e-32
 Identities = 94/434 (21%), Positives = 164/434 (37%), Gaps = 64/434 (14%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           E + +L  ++ S++  + I    L +L  L ++ ++NN +    P  LAN+T+L  L + 
Sbjct: 65  EYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
           +NQ+T      PL +LT++  L LS+N       +      + L+     N   +     
Sbjct: 121 NNQIT---DIDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQVTD----- 169

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
               + P   L+ L       + V+    L    +LE +  ++ +++   P   L   T 
Sbjct: 170 ----LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTN 222

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNAL 256
           L +LS+  + L       + S   L  LD++ N      P                    
Sbjct: 223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-------------------- 260

Query: 257 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNL 316
                     +  L  L L  N ++   P     G   L +L L+ N LE    S   NL
Sbjct: 261 -------LSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLED--ISPISNL 308

Query: 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH 376
            NL  L L  N      P  +S  + L+ L   NN +S      L NLT + ++   +N 
Sbjct: 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 377 LEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNC 436
           +  L P     L  +  L ++D   + +       +SI      KN+    +   T  + 
Sbjct: 365 ISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN--TVKNVTGALIAPATISDG 420

Query: 437 SSLVTLDLSYNRLN 450
            S    D+++N  +
Sbjct: 421 GSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 84.6 bits (210), Expect = 7e-18
 Identities = 60/321 (18%), Positives = 116/321 (36%), Gaps = 30/321 (9%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
            ++ +L+ L +S +  S I    L  L +L+ L   NN +    P  L  +T+L  L ++
Sbjct: 174 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 229

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
            NQL        L  LT++ +L L+NN      +L P    ++L       NQI      
Sbjct: 230 GNQLK---DIGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQI------ 277

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
             S I P   L+ L+     E+ +     + +  +L Y+ L    ++   P   + + TK
Sbjct: 278 --SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTK 332

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNAL 256
           L +L   N+ ++      + +   +  L    N      P+     L  +     +  A 
Sbjct: 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQAW 387

Query: 257 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNL 316
             +  +   N+     +      L    P  ++    +     ++ N         ++  
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALI--APATIS-DGGSYTEPDITWNLPSYTN-EVSYTF 443

Query: 317 ANLKLLQLEGNRFVGEIPQSL 337
           +    +      F G + Q L
Sbjct: 444 SQPVTIGKGTTTFSGTVTQPL 464

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  114 bits (287), Expect = 9e-28
 Identities = 72/448 (16%), Positives = 147/448 (32%), Gaps = 30/448 (6%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           S+  L+ L +S +    +          L+ L + +N L   +        +L+ LD+S 
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSF 99

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N            +++ ++ L LS  H +   S+ P  + +  K           +    
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPE 158

Query: 138 --HSLIPPKFQLSRLSLSS----GYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 191
                      +   +             T              D               
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218

Query: 192 ENNTKLIQLSVVNDSLAGPFRLP-IHSHKQLRLLDISTNNFRGHIPVE----IGDVLPSL 246
                 + L+ +  +     R+  +  H  +    IS    +G +        G  L +L
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE 306
            +     +         +     + I + + +     +             L  SNN L 
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLT 337

Query: 307 GHMFSRNFNLANLKLLQLEGNRF--VGEIPQSLSKCSSLEGLHLNNNSLSGRIPR----W 360
             +F    +L  L+ L L+ N+   + +I +  ++  SL+ L ++ NS+S    +    W
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA-CFHPLSIKQVHL 419
             +L  L    M +N L   I    C    +++LD+  N I  S+P       +++++++
Sbjct: 398 TKSLLSL---NMSSNILTDTIF--RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451

Query: 420 SKNMLHGQLKRGTFFNCSSLVTLDLSYN 447
           + N L   +  G F   +SL  + L  N
Sbjct: 452 ASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (267), Expect = 4e-25
 Identities = 82/450 (18%), Positives = 153/450 (34%), Gaps = 23/450 (5%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
                L++S +  S +    + SL  L+ L I +N ++            L  LD+S N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI-NAEITQSH 138
           L   IS  P V+L     L LS N F      + F N S+LKF       +  + +    
Sbjct: 81  LV-KISCHPTVNLK---HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 139 SLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWL-------- 190
            L   K  L         ED      F      + +          +             
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 191 LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250
           ++   +  + S     LA     P  S+  L  ++ + N+F   + +     +    + N
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 251 NSMNALDGS--IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGH 308
             +           S  ++K L I  + ++        ++     N+     + +     
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 309 MFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS--GRIPRWLGNLTW 366
                  ++    L    N     + ++    + LE L L  N L    +I      +  
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 367 LQYIIMPNNHLEGLIPVEFC-QLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH 425
           LQ + +  N +        C    SL  L++S N ++ ++  C  P  IK + L  N + 
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIK 434

Query: 426 GQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
             + +       +L  L+++ N+L  S+PD
Sbjct: 435 -SIPKQ-VVKLEALQELNVASNQLK-SVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.2 bits (247), Expect = 1e-22
 Identities = 74/424 (17%), Positives = 152/424 (35%), Gaps = 50/424 (11%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWC--LANMTSLRILD 74
           +    L+YL LS  N    +       V+L+ L +  N    +LP C    NM+ L+ L 
Sbjct: 66  KFNQELEYLDLS-HNKLVKIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLG 121

Query: 75  VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKF------------ 122
           +S+  L    S  P+ HL   + L++    +      E   + +                
Sbjct: 122 LSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180

Query: 123 --FYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHD--------- 171
               +     N E++    ++        LS+ +  +          +  +         
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 172 --------LEYVDLSHIKMNG----EFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHK 219
                   + Y  +S++K+ G        +   +   L    VV+D    P         
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
            + + + + +  R  + +     +      + S N L  ++  + G++  L+ L L  N 
Sbjct: 301 NMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 280 LTGEIPEHLAV--GCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQS 336
           L  E+ +   +     +L+ L +S N++       +     +L  L +  N     I + 
Sbjct: 360 LK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 337 LSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396
           L     ++ L L++N +   IP+ +  L  LQ + + +N L+ +    F +L SLQ + +
Sbjct: 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

Query: 397 SDNN 400
             N 
Sbjct: 476 HTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 42/252 (16%), Positives = 78/252 (30%), Gaps = 34/252 (13%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLAN 66
           L+       G S+ +L    +                 ++       +  R     C + 
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 67  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYA 125
           ++    LD S+N LT         HLT +E L+L  N  + +    E       L+    
Sbjct: 323 ISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 126 ENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGE 185
             N ++ +  +          L  L++SS       F         ++ +DL        
Sbjct: 382 SQNSVSYDEKKGDCSWTK--SLLSLNMSSNILTDTIFRCLP---PRIKVLDLH------- 429

Query: 186 FPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPS 245
                   + K+  +           +L       L+ L++++N  +  +P  I D L S
Sbjct: 430 --------SNKIKSIP------KQVVKLE-----ALQELNVASNQLK-SVPDGIFDRLTS 469

Query: 246 LYVFNNSMNALD 257
           L       N  D
Sbjct: 470 LQKIWLHTNPWD 481

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 3e-27
 Identities = 81/409 (19%), Positives = 148/409 (36%), Gaps = 50/409 (12%)

Query: 36  LDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 95
           +D  L       +++ID         +    + + +I+   ++ +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 96  EELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSG 155
           E L L++   +  I    F     ++  Y   N I          +P             
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI--------RYLP------------- 109

Query: 156 YEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPI 215
                  P    +   L  + L    ++   P  +  N  KL  LS+ N++L        
Sbjct: 110 -------PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 275
            +   L+ L +S+N    H+ +    ++PSL+  N S N L     S+      ++ LD 
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ 335
           S+N +   +   +    V L  L L +NNL     +   N   L  + L  N     +  
Sbjct: 213 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
              K   LE L+++NN L   +  +   +  L+ + + +NHL   +     Q D L+ L 
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 324

Query: 396 ISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 444
           +  N+I     +  H L  K + LS N       R  F N +     D 
Sbjct: 325 LDHNSIVTLKLSTHHTL--KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (262), Expect = 7e-25
 Identities = 64/362 (17%), Positives = 129/362 (35%), Gaps = 53/362 (14%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           ++ + K ++  +S   ++    L S   ++ L +++  +     +  A   +++ L +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N +   +      ++  +  L+L  N     +    F N  +L      NN +       
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL------- 153

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 197
              I                              L+ + LS  ++       L+ +   L
Sbjct: 154 -ERIE--------------------DDTFQATTSLQNLQLSSNRLT-HVDLSLIPS---L 188

Query: 198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALD 257
              +V  + L+      +     +  LD S N+    +    G V   L +     N L 
Sbjct: 189 FHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNL- 238

Query: 258 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF-NL 316
            +  +   N   L  +DLS N L  +I  H  V    LE L +SNN L     +     +
Sbjct: 239 -TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPI 294

Query: 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH 376
             LK+L L  N  +  + ++  +   LE L+L++NS+   +   L     L+ + + +N 
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 350

Query: 377 LE 378
            +
Sbjct: 351 WD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (254), Expect = 7e-24
 Identities = 66/340 (19%), Positives = 128/340 (37%), Gaps = 37/340 (10%)

Query: 131 NAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWL 190
             E     S +        + +    +D     + +   +  + V   +  M  + P  L
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMR-KLPAAL 64

Query: 191 LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250
           L++  ++  L++ +  +             ++ L +  N  R ++P  +   +P L V  
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123

Query: 251 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF 310
              N L       F N   L  L +SNN+L   I +       +L++L LS+N L     
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDL 182

Query: 311 SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPR----------- 359
           S    + +L    +  N        +L+   ++E L  ++NS++  +             
Sbjct: 183 S---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKL 233

Query: 360 ---------WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH 410
                    WL N   L  + +  N LE ++   F ++  L+ L IS+N +  +L     
Sbjct: 234 QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 411 PL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           P+ ++K + LS N L   ++R        L  L L +N +
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERN-QPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 58/313 (18%), Positives = 102/313 (32%), Gaps = 51/313 (16%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
               +++ L +  +    +      ++  L  L ++ NDL         N   L  L +S
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
           +N L   I        TS++ L LS+N     ++         L       N +      
Sbjct: 150 NNNLE-RIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLL------ 198

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
             S +     +  L  S    + V  P  +    +L  + L H                 
Sbjct: 199 --STLAIPIAVEELDASHNSINVVRGPVNV----ELTILKLQH---------------NN 237

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNAL 256
           L   +             + ++  L  +D+S N     I       +  L     S N L
Sbjct: 238 LTDTAW------------LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 284

Query: 257 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNL 316
             ++      +  L++LDLS+NHL   +  +       LE+L L +N++     S     
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTLKLS---TH 338

Query: 317 ANLKLLQLEGNRF 329
             LK L L  N +
Sbjct: 339 HTLKNLTLSHNDW 351

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 2e-26
 Identities = 68/437 (15%), Positives = 138/437 (31%), Gaps = 69/437 (15%)

Query: 15  IGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILD 74
           I ++    K   ++DS+  + L     S  +++EL +  N L       LA  T L +L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 75  VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEI 134
           +SSN L     +  L  L+++  L L+NN+      ++       ++  +A NN I+   
Sbjct: 65  LSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNIS--- 112

Query: 135 TQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN 194
                +   + Q                          + + L++ K+            
Sbjct: 113 ----RVSCSRGQG------------------------KKNIYLANNKIT-MLRDLDEGCR 143

Query: 195 TKLIQLSVVNDSLAG-PFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSM 253
           +++  L +  + +    F     S   L  L++  N     +  ++      L   + S 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSS 200

Query: 254 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN 313
           N L   +   F +   +  + L NN L   I + L     NLE   L  N        R+
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRD 256

Query: 314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP 373
           F   N ++  +          Q+  +C+     H                        +P
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE----------------DLP 300

Query: 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTF 433
               + LI     +     +L    +          +    +++   K      +     
Sbjct: 301 APFADRLI---ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVT 356

Query: 434 FNCSSLVTLDLSYNRLN 450
               + +TL+     L+
Sbjct: 357 LRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.5 bits (240), Expect = 1e-21
 Identities = 56/399 (14%), Positives = 123/399 (30%), Gaps = 59/399 (14%)

Query: 59  SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHS 118
           ++     N    +I  V+ + L     +S      +++EL LS N     IS       +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFT 58

Query: 119 RLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLS 178
           +L+     +N +                LS                       L  +DL+
Sbjct: 59  KLELLNLSSNVL--------YETLDLESLST----------------------LRTLDLN 88

Query: 179 HIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVE 238
           +  +        L     +  L   N++++   R+     +  + + ++ N       ++
Sbjct: 89  NNYVQE------LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLD 139

Query: 239 IGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLE 296
            G    +  L +  N ++ ++        +   L+ L+L  N +  ++   +      L+
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLK 194

Query: 297 SLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS- 354
           +L LS+N L        F + A +  + L  N+ V  I ++L    +LE   L  N    
Sbjct: 195 TLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 355 GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-- 412
           G +  +      +Q +      ++ L      +     +                  L  
Sbjct: 252 GTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 413 --SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
               +   LS      +       N +    +D    + 
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.5 bits (196), Expect = 4e-16
 Identities = 46/375 (12%), Positives = 112/375 (29%), Gaps = 47/375 (12%)

Query: 13  QIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG-SLPWCLANMTSLR 71
           ++        K + L+++  + + D        +Q L +  N++   +     A+  +L 
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 72  ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP-FFNHSRLKFFYAENNQI 130
            L++  N +         V    ++ L LS+N       + P F + + + +    NN++
Sbjct: 173 HLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRNNKL 226

Query: 131 NAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWL 190
                                        V   K L    +LE+ DL     +       
Sbjct: 227 -----------------------------VLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 191 LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250
              N ++  ++    ++               L           +P    D L +L    
Sbjct: 258 FSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKE 314

Query: 251 NSMNALDGS----IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE 306
           +++ +  GS    +     N    + +D         + + + +      +L      L+
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALD 373

Query: 307 GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL-HLNNNSLSGRIPRWLGNLT 365
             + +     A L     +    + E+  +  + S L+ L  +        + +      
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN 432

Query: 366 WLQYIIMPNNHLEGL 380
            ++   M  +    L
Sbjct: 433 AIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 60/411 (14%), Positives = 124/411 (30%), Gaps = 42/411 (10%)

Query: 15  IGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWC----------- 63
           + +S  ++K L LS +  S+I    L     L+ L + +N L  +L              
Sbjct: 29  LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLN 88

Query: 64  ------LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNH 117
                 L    S+  L  ++N     IS          + + L+NN   + +        
Sbjct: 89  NNYVQELLVGPSIETLHAANNN----ISRVSCSRGQGKKNIYLANNKITM-LRDLDEGCR 143

Query: 118 SRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDL 177
           SR+++   + N+I+        L      L  L+L   +   V           L+ +DL
Sbjct: 144 SRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFIYDVKGQVVF---AKLKTLDL 198

Query: 178 SHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLP--IHSHKQLRLLDISTNNFRGHI 235
           S  K+    P    ++   +  +S+ N+ L     +   +   + L   D+  N F    
Sbjct: 199 SSNKLAFMGPE--FQSAAGVTWISLRNNKLV---LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 236 PVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 295
             +       +     +   +      +        +          ++P   A   + L
Sbjct: 254 LRDFFSKNQRVQ--TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIAL 310

Query: 296 ESLALSNNNLEGHMFSR----NFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN 351
           +    +  + +G    R      N A  + +     ++   I Q   +  +   L     
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
           +L  ++         L   +        L      +   LQ+L        
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHA-TEEQSPLQLLRAIVKRYE 420

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (271), Expect = 9e-26
 Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 30/241 (12%)

Query: 234 HIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 293
            +P  I      L +  N +  L+      F +   L+ L+L+ N ++  +         
Sbjct: 25  AVPEGIPTETRLLDLGKNRIKTLN---QDEFASFPHLEELELNENIVS-AVEPGAFNNLF 80

Query: 294 NLESLALSNNNL---EGHMF-----------SRNF----------NLANLKLLQLEGNRF 329
           NL +L L +N L      +F           S N           +L NLK L++  N  
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD 389
           V    ++ S  +SLE L L   +L+      L +L  L  + + + ++  +    F +L 
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 390 SLQILDISDNNISGSL-PACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 448
            L++L+IS      ++ P C + L++  + ++   L   +      +   L  L+LSYN 
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP 259

Query: 449 L 449
           +
Sbjct: 260 I 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (271), Expect = 1e-25
 Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 10/235 (4%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
             LR L + +N  +  IP+ +   L +L   + S N +   +   F ++  L+ L++ +N
Sbjct: 80  FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 279 HLTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFNLANLKLLQLEGNRFVGEIPQ 335
            L   I      G  +LE L L   NL        S   +L  L +L+L           
Sbjct: 139 DLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDY 194

Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
           S  +   L+ L +++      +         L  + + + +L  +  +    L  L+ L+
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254

Query: 396 ISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           +S N IS    +  H L  ++++ L    L   ++   F   + L  L++S N+L
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 5e-24
 Identities = 52/238 (21%), Positives = 97/238 (40%), Gaps = 14/238 (5%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILDLSN 277
             L  LDIS N     +   +   L +L       N L   I   +F  +  L+ L L  
Sbjct: 104 SNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEK 161

Query: 278 NHLTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFNLANLKLLQLEGNRFVGEIP 334
            +LT  IP         L  L L + N+     + F     L  LK+L++    ++  + 
Sbjct: 162 CNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFK---RLYRLKVLEISHWPYLDTMT 217

Query: 335 QSLSKCSSLEGLHLNNNSLSGRIPRW-LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393
            +     +L  L + + +L+  +P   + +L +L+++ +  N +  +      +L  LQ 
Sbjct: 218 PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 394 LDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
           + +    ++   P  F  L  ++ +++S N L   L+   F +  +L TL L  N L 
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 8e-24
 Identities = 67/340 (19%), Positives = 128/340 (37%), Gaps = 43/340 (12%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
              + L L  +    +      S  HL+EL ++ N +    P    N+ +LR L + SN+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHS 139
           L   I       L+++ +L +S N   I +    F +   LK     +N +         
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDL--------V 141

Query: 140 LIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQ 199
            I                      +     + LE + L    +    PT  L +   LI 
Sbjct: 142 YIS--------------------HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIV 180

Query: 200 LSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEI--GDVLPSLYVFNNSMNALD 257
           L + + ++            +L++L+IS   +   +      G  L SL + + ++ A+ 
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240

Query: 258 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNF 314
                +  ++ +L+ L+LS N ++  I   +    + L+ + L    L   E + F    
Sbjct: 241 ---YLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR--- 293

Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS 354
            L  L++L + GN+             +LE L L++N L+
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 45/264 (17%), Positives = 91/264 (34%), Gaps = 56/264 (21%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           + + +LK L + D++   I  R    L  L++L ++  +L       L+++  L +L + 
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
              +  +I       L  ++ L +S+  +   ++         L      +  + A    
Sbjct: 185 HLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSITHCNLTA---- 238

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
               +P                       + H   L +++LS+  ++      +L    +
Sbjct: 239 ----VP--------------------YLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLR 273

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNAL 256
           L ++ +V                  +L  +    FRG         L  L V N S N L
Sbjct: 274 LQEIQLVGG----------------QLAVVEPYAFRG---------LNYLRVLNVSGNQL 308

Query: 257 DGSIPSSFGNMKFLQILDLSNNHL 280
                S F ++  L+ L L +N L
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPL 332

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  108 bits (271), Expect = 2e-25
 Identities = 87/448 (19%), Positives = 159/448 (35%), Gaps = 21/448 (4%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
           P  K LSLS ++ S +    +  L  L+ L + +N +R            L  LDVS N+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI---NAEITQ 136
           L  +IS  P+  L     L LS N F +    + F N ++L F      +    +     
Sbjct: 112 LQ-NISCCPMASLR---HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPT----WLLE 192
              L      L    +  G  + +  P             L  +++N          L  
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNS 252
                     +   L+   R P   +  L+ ++ +               +  L ++N +
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 253 MNAL--DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF 310
           +           S   +K L I  + N        E L      +    LS ++      
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 311 SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS--GRIPRWLGNLTWLQ 368
               + ++   L    N F   + Q  S    L+ L L  N L    ++     N++ L+
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406

Query: 369 YIIMPNNHLEGLIPVEFCQL-DSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQ 427
            + +  N L        C   +S+ +L++S N ++GS+  C  P  +K + L  N +   
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-PPKVKVLDLHNNRIM-S 464

Query: 428 LKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           + +    +  +L  L+++ N+L  S+PD
Sbjct: 465 IPKD-VTHLQALQELNVASNQLK-SVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 1e-22
 Identities = 83/472 (17%), Positives = 153/472 (32%), Gaps = 80/472 (16%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
            +  L+ L LS  N  R LD  +      L+ L + +N L+ ++      M SLR LD+S
Sbjct: 74  FLSELRVLRLS-HNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLS 129

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
            N            +LT +  L LS   F+           + L       + ++  I  
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEF------PTWL 190
             +        + L L        +    +   + L ++ LS+IK+N E           
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 191 LENNTKLIQLSVVNDSLAGPFRLPIHS---HKQLRLLDISTNNFRGHIPVEIGD----VL 243
           L     L+ +++ +        + +      + +  L+I        I  E        L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNN 303
            SL + +        S  + +     + I  LS +     I         +   L  + N
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQN 363

Query: 304 --------------NLEGHMFSRN---------FNLANLKLLQLEGNRFV----GEIPQS 336
                          L+  +  RN             N+  L+               ++
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 337 LSKCSSLEGLHLNNNSLSGRIPRWL-GNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
            +   S+  L+L++N L+G + R L   +  L    + NN +  + P +   L +LQ L+
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD---LHNNRIMSI-PKDVTHLQALQELN 479

Query: 396 ISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447
           ++ N +  S+P                        G F   +SL  + L  N
Sbjct: 480 VASNQLK-SVP-----------------------DGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 58/335 (17%), Positives = 115/335 (34%), Gaps = 23/335 (6%)

Query: 8   NTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG----SLPWC 63
                 +   +   L  +   +S  S  ++  + +L HLQ   I  ND       +    
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 64  LANMTSLRILDVSSNQLT--GSISSSPLVHLTSIEELMLSNNHFQIPISLEPF-FNHSRL 120
           L    +L  + +   + T   S+          +E L + N      I  E F ++ + L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 121 KFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI 180
           K    E+ +    +    +L     +++   LS   +                +++ +  
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS-ISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 181 KMNGEFPTWLLENNTKLIQLSVVN---DSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPV 237
               +          +L  L +      +      +   +   L  LD+S N+   H   
Sbjct: 364 VF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHAYD 421

Query: 238 EIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLES 297
                  S+ V N S N L GS+         +++LDL NN +   IP+ +      L+ 
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-SIPKDVT-HLQALQE 477

Query: 298 LALSNNNLE---GHMFSRNFNLANLKLLQLEGNRF 329
           L +++N L+     +F     L +L+ + L  N +
Sbjct: 478 LNVASNQLKSVPDGVFD---RLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 40/275 (14%), Positives = 79/275 (28%), Gaps = 62/275 (22%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLAN 66
           ++         ++ SL    + +       +        +    +  +D       C  +
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 67  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNH-SRLKFFYA 125
            +S   L+ + N  T          L  ++ L+L  N  +   +          +     
Sbjct: 352 PSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTKNMSSLET 407

Query: 126 ENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGE 185
            +  +N                   SL+S   D             +  ++LS       
Sbjct: 408 LDVSLN-------------------SLNSHAYDRTC-----AWAESILVLNLSS------ 437

Query: 186 FPTWLLENNTKLIQLSVVNDSLAGPF-RLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLP 244
                             N      F  LP     ++++LD+  N     IP ++   L 
Sbjct: 438 ------------------NMLTGSVFRCLP----PKVKVLDLHNNRIM-SIPKDV-THLQ 473

Query: 245 SLYVFNNSMNALDGSIP-SSFGNMKFLQILDLSNN 278
           +L   N + N L  S+P   F  +  LQ + L +N
Sbjct: 474 ALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            S+  L+LS +  +  + R L     ++ L + NN +  S+P  + ++ +L+ L+V+SNQ
Sbjct: 428 ESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQ 106
           L  S+       LTS++ + L +N + 
Sbjct: 485 LK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (258), Expect = 7e-25
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 11/221 (4%)

Query: 234 HIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT-GEIPEHLAVGC 292
            +P  I      L + +N + +L       F  +  L  L LS+N L+          G 
Sbjct: 21  SVPTGIPSSATRLELESNKLQSLP---HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 293 VNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSL-SKCSSLEGLHLNN 350
            +L+ L LS N +     S NF  L  L+ L  + +        S+     +L  L +++
Sbjct: 78  TSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 351 NSLSGRIPRWLGNLTWLQYIIMP-NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF 409
                        L+ L+ + M  N+  E  +P  F +L +L  LD+S   +    P  F
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 410 HPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           + L S++ +++S N     L    +   +SL  LD S N +
Sbjct: 196 NSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 30/235 (12%)

Query: 220 QLRLLDISTNNFR-GHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
           QL  L +S+N         +      SL   + S N +  ++ S+F  ++ L+ LD  ++
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHS 111

Query: 279 HLTGEIPEHLA-VGCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEI-PQ 335
           +L  ++ E    +   NL  L +S+ +     F+  F  L++L++L++ GN F     P 
Sbjct: 112 NLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
             ++  +L  L L+   L    P    +L+ LQ + M +N+   L    +  L+SLQ+LD
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

Query: 396 ISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
            S N+I  S                                SSL  L+L+ N   
Sbjct: 230 YSLNHIMTSKKQELQHFP-----------------------SSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 9e-19
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 15/186 (8%)

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN---LEGHMFSRNFNLANLKLLQLEGN 327
             +  ++  LT  +P  +     +   L L +N    L   +F     L  L  L L  N
Sbjct: 10  TEIRCNSKGLT-SVPTGIPS---SATRLELESNKLQSLPHGVFD---KLTQLTKLSLSSN 62

Query: 328 R--FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVE- 384
              F G   QS    +SL+ L L+ N +   +      L  L+++   +++L+ +     
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 385 FCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 443
           F  L +L  LDIS  +   +    F+ L S++ + ++ N          F    +L  LD
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 444 LSYNRL 449
           LS  +L
Sbjct: 182 LSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 50/291 (17%), Positives = 91/291 (31%), Gaps = 63/291 (21%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDL--RGSLPWCLANMTSLRILDVSS 77
            S   L L  +    +       L  L +L + +N L  +G         TSL+ LD+S 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N +     SS  + L  +E L   +++ +       F +   L +    +          
Sbjct: 88  NGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT------- 138

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 197
             +                               LE + ++              N+   
Sbjct: 139 -RVAF--------------------NGIFNGLSSLEVLKMAG-------------NS--- 161

Query: 198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL---YVFNNSMN 254
            Q + + D             + L  LD+S       +     + L SL    + +N+  
Sbjct: 162 FQENFLPDIFTEL--------RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 255 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305
           +LD      +  +  LQ+LD S NH+     + L     +L  L L+ N+ 
Sbjct: 213 SLD---TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 32/199 (16%), Positives = 69/199 (34%), Gaps = 26/199 (13%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGL-CSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
             +  L++L    SN  ++ +  +  SL +L  L I +   R +       ++SL +L +
Sbjct: 98  LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEIT 135
           + N    +        L ++  L LS    +  +S   F + S L+     +N   +   
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFS--- 213

Query: 136 QSHSLIPPKF-----QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMN------- 183
                +          L  L  S  +       +  +    L +++L+    N       
Sbjct: 214 -----LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ---NDFACTCE 265

Query: 184 -GEFPTWLLENNTKLIQLS 201
              F  W+ +    L+++ 
Sbjct: 266 HQSFLQWIKDQRQLLVEVE 284

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 9/219 (4%)

Query: 17  ESMPSLKYLSLSDSN--SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILD 74
           + +  L  LSLS +         +       L+ L +  N +  ++      +  L  LD
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107

Query: 75  VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEI 134
              + L      S  + L ++  L +S+ H ++      F   S L+      N      
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 135 TQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN 194
                +      L+ L LS    + ++ P        L+ +++SH        T+  +  
Sbjct: 167 --LPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCL 222

Query: 195 TKLIQLSVVNDSLAG-PFRLPIHSHKQLRLLDISTNNFR 232
             L  L    + +     +   H    L  L+++ N+F 
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (263), Expect = 9e-25
 Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 16/235 (6%)

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
           Q   +  +       +P  I      L +  N++  +      +F ++  L++L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRNS 110

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFNLANLKLLQLEGNRFVGEIPQS 336
           +  +I      G  +L +L L +N L       F     L+ L+ L L  N        +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYA 166

Query: 337 LSKCSSLEGLHL-NNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
            ++  SL  L L     L          L  L+Y+ +   +++  +P     L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224

Query: 396 ISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           +S N+     P  FH L S+K++ +  + +   ++R  F   +SLV L+L++N L
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.8 bits (249), Expect = 6e-23
 Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 20/216 (9%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPS---LYVFNNSMNALDGSIPSSFGNMKFLQILDL 275
             L +L +  N+ R  I V   + L S   L +F+N +  +      +F  +  L+ L L
Sbjct: 99  HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIP---SGAFEYLSKLRELWL 154

Query: 276 SNNHLTGEIPEHLAVGCVNLESLALSNNN----LEGHMFSRNFNLANLKLLQLEGNRFVG 331
            NN +   IP +      +L  L L        +    F     L NLK L L       
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCNIK- 209

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
           ++P +L+    LE L ++ N      P     L+ L+ + + N+ +  +    F  L SL
Sbjct: 210 DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 392 QILDISDNNISGSLPA-CFHPL-SIKQVHLSKNMLH 425
             L+++ NN+S SLP   F PL  + ++HL  N  +
Sbjct: 269 VELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 57/290 (19%), Positives = 101/290 (34%), Gaps = 66/290 (22%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            + +YL+L ++N   I       L HL+ L +  N +R         + SL  L++  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY-AENNQINAEITQSH 138
           LT  I S    +L+ + EL L NN  +  I    F     L      E  ++        
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKL-------- 184

Query: 139 SLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLI 198
             I                    F        +L+Y++L                     
Sbjct: 185 EYISEG----------------AF----EGLFNLKYLNLGM---C--------------- 206

Query: 199 QLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL---YVFNNSMNA 255
            +  + +         +     L  L++S N+F   I       L SL   +V N+ ++ 
Sbjct: 207 NIKDMPN---------LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305
           ++    ++F  +  L  L+L++N+L+  +P  L      L  L L +N  
Sbjct: 257 IE---RNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.5 bits (160), Expect = 9e-12
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRG-LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
             +PSL  L L +      +  G    L +L+ L +   +++  +P  L  +  L  L++
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEM 225

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEIT 135
           S N     I       L+S+++L + N+   + I    F   + L      +N ++   +
Sbjct: 226 SGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLS---S 280

Query: 136 QSHSLIPPKFQLSRLSLSS 154
             H L  P   L  L L  
Sbjct: 281 LPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHL 377
               +         E+PQ +   S+   L+L  N++         +L  L+ + +  N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNC 436
             +    F  L SL  L++ DN ++      F  L  ++++ L  N +   +    F   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 437 SSLVTLDLS-YNRLNGSIPD 455
            SL+ LDL    +L   I +
Sbjct: 171 PSLMRLDLGELKKLE-YISE 189

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 49/265 (18%), Positives = 82/265 (30%), Gaps = 65/265 (24%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
            +  L+ L L  ++  +I       L  L  L + +N L          ++ LR L + +
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N +  SI S     + S+  L L        IS   F     LK+       I       
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----- 210

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 197
                P        L                   LE +++S              N+   
Sbjct: 211 ----MPNLT----PLVG-----------------LEELEMSG-------------NHFPE 232

Query: 198 IQLSVVNDSLAGPFR-LPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL---YVFNNSM 253
           I+         G F  L       L+ L +  +     I     D L SL    + +N++
Sbjct: 233 IR--------PGSFHGLS-----SLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL 278

Query: 254 NALDGSIPSSFGNMKFLQILDLSNN 278
           ++L       F  +++L  L L +N
Sbjct: 279 SSLP---HDLFTPLRYLVELHLHHN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  103 bits (259), Expect = 3e-24
 Identities = 62/235 (26%), Positives = 101/235 (42%), Gaps = 16/235 (6%)

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
           Q   +     N R  +P  I      L +  N +  +     +SF +++ L+IL LS NH
Sbjct: 44  QFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIK---VNSFKHLRHLEILQLSRNH 99

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFNLANLKLLQLEGNRFVGEIPQS 336
           +   I      G  NL +L L +N L       F     L+ LK L L  N        +
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYA 155

Query: 337 LSKCSSLEGLHL-NNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
            ++  SL  L L     LS         L+ L+Y+ +   +L   IP     L  L  LD
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELD 213

Query: 396 ISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           +S N++S   P  F  L  ++++ + ++ +   ++R  F N  SLV ++L++N L
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.1 bits (247), Expect = 1e-22
 Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 18/218 (8%)

Query: 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPS---LYVFNNSMNALDGSIPSSFGNMKFLQI 272
              + L +L +S N+ R  I +   + L +   L +F+N +  +      +F  +  L+ 
Sbjct: 85  KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIP---NGAFVYLSKLKE 140

Query: 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNN----LEGHMFSRNFNLANLKLLQLEGNR 328
           L L NN +   IP +      +L  L L        +    F     L+NL+ L L    
Sbjct: 141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCN 196

Query: 329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQL 388
              EIP +L+    L+ L L+ N LS   P     L  LQ + M  + ++ +    F  L
Sbjct: 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 389 DSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLH 425
            SL  ++++ NN++      F PL  ++++HL  N  +
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 55/290 (18%), Positives = 106/290 (36%), Gaps = 66/290 (22%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            + + L+L ++    I       L HL+ L +  N +R         + +L  L++  N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY-AENNQINAEITQSH 138
           LT +I +   V+L+ ++EL L NN  +  I    F     L+     E  ++        
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRL-------- 173

Query: 139 SLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLI 198
           S I                             +L Y++L+               N + I
Sbjct: 174 SYIS--------------------EGAFEGLSNLRYLNLAM-------------CNLREI 200

Query: 199 QLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL---YVFNNSMNA 255
                  +L    +L          LD+S N+    I       L  L   ++  + +  
Sbjct: 201 P------NLTPLIKL--------DELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305
           ++    ++F N++ L  ++L++N+LT  +P  L     +LE + L +N  
Sbjct: 246 IE---RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH 376
            N +LL L  N+       S      LE L L+ N +          L  L  + + +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 377 LEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFN 435
           L  +    F  L  L+ L + +N I       F+ + S++++ L +      +  G F  
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 436 CSSLVTLDLSYNRLNGSIPD 455
            S+L  L+L+   L   IP+
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 49/261 (18%), Positives = 79/261 (30%), Gaps = 57/261 (21%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
            +  L+ L LS ++   I       L +L  L + +N L          ++ L+ L + +
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N +  SI S     + S+  L L        IS   F   S L++       +       
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE----- 199

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 197
              IP    L +L               L                        L  N   
Sbjct: 200 ---IPNLTPLIKL-------------DELD-----------------------LSGN--- 217

Query: 198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALD 257
             LS +     G F+        L+ L +  +  +  I     D L SL   N + N L 
Sbjct: 218 -HLSAIR---PGSFQ----GLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268

Query: 258 GSIPSSFGNMKFLQILDLSNN 278
                 F  +  L+ + L +N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
             + +L  L L D+  + I +     L  L+EL++ NN +     +    + SLR LD+ 
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168

Query: 77  S-NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
              +L+  IS      L+++  L L+  + +    +       +L       N +
Sbjct: 169 ELKRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL 219

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (259), Expect = 7e-24
 Identities = 72/355 (20%), Positives = 123/355 (34%), Gaps = 55/355 (15%)

Query: 41  CSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 100
           C       L +  + L  +LP CL     +  L +  N LT S+ +        +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEV 88

Query: 101 SNNHFQ-IPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG 159
           S N    +P+          L  F      + A  +    L      +    L+S     
Sbjct: 89  SGNQLTSLPVLPP---GLLELSIFSNPLTHLPALPSGLCKL-----WIFGNQLTS----- 135

Query: 160 VTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHK 219
              P        L+ + +S  ++    P       ++L +L   N+ L     LP     
Sbjct: 136 --LPVLPPG---LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLP-MLPS 181

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
            L+ L +S N     +P    + L  L+ +NN + +L             L+ L +S N 
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNR 232

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
           LT  +P   +     L+ L +S N L     S     + L  L +  N+    +P+SL  
Sbjct: 233 LT-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIH 282

Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQIL 394
            SS   ++L  N LS R  + L  +T       P    +        +  +L + 
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.8 bits (233), Expect = 1e-20
 Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 38/244 (15%)

Query: 212 RLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 271
           ++    +    +L++  +     +P  +   + +L + +N++     S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT----SLPALPPE---LR 84

Query: 272 ILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG 331
            L++S N LT  +P     G + L   +    +L           + L  L + GN+   
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
            +P        L+ L +++N L+  +P     L  L      NN L  L P+       L
Sbjct: 135 SLPVLPP---GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTSL-PML---PSGL 183

Query: 392 QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451
           Q L +SDN ++ SLP     L   ++    N L   L        S L  L +S NRL  
Sbjct: 184 QELSVSDNQLA-SLPTLPSEL--YKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLT- 234

Query: 452 SIPD 455
           S+P 
Sbjct: 235 SLPV 238

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.2 bits (221), Expect = 4e-19
 Identities = 69/294 (23%), Positives = 111/294 (37%), Gaps = 55/294 (18%)

Query: 172 LEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNF 231
              +++    +    P  L  +   +  L + +++L     LP     +LR L++S N  
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 232 RGHIPVEIGDVLPSLYVFNNSMNALDG----------------SIPSSFGNMKFLQILDL 275
              +PV     L  L +F+N +  L                  S+P        LQ L +
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG---LQELSV 148

Query: 276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ 335
           S+N L   +P   +     L  L   NN L     S     + L+ L +  N+    +P 
Sbjct: 149 SDNQLA-SLPALPS----ELCKLWAYNNQLT----SLPMLPSGLQELSVSDNQLA-SLPT 198

Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
             S    L  L   NN L+  +P     L  L   I+  N L  L PV       L+ L 
Sbjct: 199 LPS---ELYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLTSL-PVL---PSELKELM 247

Query: 396 ISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           +S N ++ SLP    P  +  + + +N L  +L      + SS  T++L  N L
Sbjct: 248 VSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 60/347 (17%), Positives = 114/347 (32%), Gaps = 69/347 (19%)

Query: 3   TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW 62
            ++ +  + L  +    P L+ LS+SD+  + +          L +L+  NN L  SLP 
Sbjct: 124 CKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLT-SLP- 177

Query: 63  CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF-QIPISLEPFFNHSRLK 121
                + L+ L VS NQL  S+ + P    + + +L   NN    +P         S LK
Sbjct: 178 --MLPSGLQELSVSDNQLA-SLPTLP----SELYKLWAYNNRLTSLPALP------SGLK 224

Query: 122 FFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIK 181
                 N++                              + P        L+ + +S  +
Sbjct: 225 ELIVSGNRLT-----------------------------SLPVLPSE---LKELMVSGNR 252

Query: 182 MNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLP--IHSHKQLRLLDISTNNFRGHIPVEI 239
           +     T L    + L+ LSV  + L    RLP  +        +++  N       ++ 
Sbjct: 253 L-----TSLPMLPSGLLSLSVYRNQLT---RLPESLIHLSSETTVNLEGNPLS-ERTLQA 303

Query: 240 GDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA 299
              + S   ++  +   D +  S+       + L L+         E             
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRET---RALHLAAADWLVPAREGEPAPADRWHMFG 360

Query: 300 LSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL 346
             +N      FS   +  +     ++   F  +I   L++ +  E L
Sbjct: 361 QEDNADA---FSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEAL 404

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (257), Expect = 1e-23
 Identities = 61/352 (17%), Positives = 123/352 (34%), Gaps = 50/352 (14%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           ++ + K ++  +S   ++    L S   ++ L +++  +     +  A   +++ L +  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N +   +      ++  +  L+L  N     +    F N  +L      NN +       
Sbjct: 109 NAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL------- 159

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 197
              I                              L+ + LS  ++       L+ +   L
Sbjct: 160 -ERIE--------------------DDTFQATTSLQNLQLSSNRLT-HVDLSLIPS---L 194

Query: 198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALD 257
              +V  + L+      +     +  LD S N+    +   +   L  L + +N++    
Sbjct: 195 FHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDT- 247

Query: 258 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF-NL 316
               +   N   L  +DLS N L  +I  H  V    LE L +SNN L     +     +
Sbjct: 248 ----AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPI 300

Query: 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQ 368
             LK+L L  N  +  + ++  +   LE L+L++NS+          L  L 
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (255), Expect = 2e-23
 Identities = 77/427 (18%), Positives = 149/427 (34%), Gaps = 74/427 (17%)

Query: 21  SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQL 80
               + +              +L + + +   N+ +R      L +   + +L+++  Q+
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 81  TGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSL 140
              I +    +  +I++L +  N  +  +    F N   L     E N +++        
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSS-------- 137

Query: 141 IPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQL 200
           +P                        ++   L  + +S              NN     L
Sbjct: 138 LP--------------------RGIFHNTPKLTTLSMS--------------NN----NL 159

Query: 201 SVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI 260
             + D           +   L+ L +S+N    H+ +    ++PSL+  N S N L    
Sbjct: 160 ERIEDDT-------FQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL---- 204

Query: 261 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLK 320
            S+      ++ LD S+N +   +   +    V L  L L +NNL     +   N   L 
Sbjct: 205 -STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLT--DTAWLLNYPGLV 257

Query: 321 LLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL 380
            + L  N     +     K   LE L+++NN L   +  +   +  L+ + + +NHL   
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH- 315

Query: 381 IPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 440
           +     Q D L+ L +  N+I  +L    H  ++K + LS N       R  F N +   
Sbjct: 316 VERNQPQFDRLENLYLDHNSIV-TLKLSTHH-TLKNLTLSHNDWDCNSLRALFRNVARPA 373

Query: 441 TLDLSYN 447
             D   +
Sbjct: 374 VDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 5/135 (3%)

Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
             ++ +     + + G    +L+   + + +   N+++       L +   ++ + + + 
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLN---NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFF 434
            +E +    F    ++Q L +  N I    P  F  +  +  + L +N L   L RG F 
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144

Query: 435 NCSSLVTLDLSYNRL 449
           N   L TL +S N L
Sbjct: 145 NTPKLTTLSMSNNNL 159

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (254), Expect = 1e-23
 Identities = 69/405 (17%), Positives = 141/405 (34%), Gaps = 52/405 (12%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW-CLANMTSLRILDVSSN 78
             + Y+ LS ++ + + +     L  LQ L ++       +       ++SL IL +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 79  QLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           Q    + +     L ++E L L+  +     +S   F   + L+     +N I       
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI------- 141

Query: 138 HSLIPPKF-----QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE 192
             + P  F     +   L L+      +     L    + +    + ++++      + E
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL----NFQGKHFTLLRLSSITLQDMNE 197

Query: 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYV---- 248
                 +          PF+        +  LD+S N F+  +     D +    +    
Sbjct: 198 YWLGWEKCGN-------PFKN-----TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 249 FNNSMNALDGSIPSSFGNMKF----------LQILDLSNNHLTGEIPEHLAVGCVNLESL 298
            +NS N       ++F +             ++  DLS + +   + + +     +LE L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304

Query: 299 ALSNNN---LEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG 355
            L+ N    ++ + F     L +L  L L  N       +       LE L L+ N +  
Sbjct: 305 TLAQNEINKIDDNAFW---GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361

Query: 356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNN 400
              +    L  L+ + +  N L+ +    F +L SLQ + +  N 
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (254), Expect = 2e-23
 Identities = 76/428 (17%), Positives = 141/428 (32%), Gaps = 85/428 (19%)

Query: 44  VHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 103
            H+  + +  N +        + +  L+ L V        I ++    L+S+  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 104 HFQIPISLEP--FFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT 161
            F     LE   F   + L+        ++                    LS  +   +T
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQCNLDG-----------------AVLSGNFFKPLT 129

Query: 162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQL 221
                     LE + L               NN K IQ +    ++           ++ 
Sbjct: 130 ---------SLEMLVLRD-------------NNIKKIQPASFFLNM-----------RRF 156

Query: 222 RLLDISTNNFRGHIPVEIGDVLPS-----LYVFNN-----SMNALDGSIPSSFGNMKFLQ 271
            +LD++ N  +  I  E            L + +      +   L      +      + 
Sbjct: 157 HVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 272 ILDLSNNHLTGEIPEHL--AVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329
            LDLS N     + +    A+    ++SL LSN+   G  F              +   F
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT------NFKDPDNFTF 269

Query: 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD 389
            G       + S ++   L+ + +   +     + T L+ + +  N +  +    F  L 
Sbjct: 270 KG------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323

Query: 390 SLQILDISDNNISGSLPAC-FHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447
            L  L++S N +  S+ +  F  L  ++ + LS N +   L   +F    +L  L L  N
Sbjct: 324 HLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN 381

Query: 448 RLNGSIPD 455
           +L  S+PD
Sbjct: 382 QLK-SVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.1 bits (203), Expect = 5e-17
 Identities = 49/225 (21%), Positives = 83/225 (36%), Gaps = 40/225 (17%)

Query: 245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN 304
            + +  NS+  L+    +SF  ++ LQ L +        I  +   G  +L  L L  N 
Sbjct: 34  YVDLSLNSIAELN---ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89

Query: 305 LEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSL-SGRIPR-WLG 362
                          + LQLE   F        +  ++LE L L   +L    +   +  
Sbjct: 90  ---------------QFLQLETGAF--------NGLANLEVLTLTQCNLDGAVLSGNFFK 126

Query: 363 NLTWLQYIIMPNNHLEGLIPVE-FCQLDSLQILDISDNNISGSLPACFHPLSIKQV---H 418
            LT L+ +++ +N+++ + P   F  +    +LD++ N +             K      
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 419 LSKNMLH-------GQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
           LS   L        G  K G  F  +S+ TLDLS N    S+   
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 2/115 (1%)

Query: 16  GESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
           G     +K   LS S    +L         L++L +  N++          +T L  L++
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
           S N L  SI S    +L  +E L LS NH +  +  + F     LK    + NQ+
Sbjct: 331 SQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
                L+ L+L+ +  ++I D     L HL +L +  N L         N+  L +LD+S
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
            N +  ++     + L +++EL L  N  +
Sbjct: 356 YNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 7e-23
 Identities = 52/221 (23%), Positives = 88/221 (39%), Gaps = 17/221 (7%)

Query: 234 HIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 293
            +PV I      +++  N ++ +     +SF   + L IL L +N L   I      G  
Sbjct: 25  AVPVGIPAASQRIFLHGNRISHVP---AASFRACRNLTILWLHSNVLA-RIDAAAFTGLA 80

Query: 294 NLESLALSNNN----LEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHL 348
            LE L LS+N     ++   F     L  L  L L+      E+        ++L+ L+L
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYL 136

Query: 349 NNNSLSGRIP-RWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA 407
            +N+L   +P     +L  L ++ +  N +  +    F  L SL  L +  N ++   P 
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 408 CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447
            F  L  +  ++L  N L   L         +L  L L+ N
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 94.7 bits (236), Expect = 5e-22
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 14/197 (7%)

Query: 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFN 315
           ++P         Q + L  N ++  +P      C NL  L L +N L   +   F+    
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---G 78

Query: 316 LANLKLLQLEGNRFVGEIPQS-LSKCSSLEGLHLNNNSLSGRIP-RWLGNLTWLQYIIMP 373
           LA L+ L L  N  +  +  +       L  LHL+   L   +       L  LQY+ + 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGT 432
           +N L+ L    F  L +L  L +  N IS      F  L S+ ++ L +N +   +    
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA 196

Query: 433 FFNCSSLVTLDLSYNRL 449
           F +   L+TL L  N L
Sbjct: 197 FRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 12/211 (5%)

Query: 221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 280
            + + +  N    H+P        +L +     N L     ++F  +  L+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 281 TGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFNLANLKLLQLEGNRFVGEIP-QS 336
              +      G   L +L L    L      +F     LA L+ L L+ N     +P  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ-ALPDDT 148

Query: 337 LSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396
                +L  L L+ N +S    R    L  L  +++  N +  + P  F  L  L  L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 397 SDNNISGSLPA-CFHPL-SIKQVHLSKNMLH 425
             NN+S +LP     PL +++ + L+ N   
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 6/142 (4%)

Query: 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN- 375
           A  + + L GNR       S   C +L  L L++N L+         L  L+ + + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPA-CFHPL-SIKQVHLSKNMLHGQLKRGTF 433
            L  + P  F  L  L  L +    +   L    F  L +++ ++L  N L   L   TF
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 434 FNCSSLVTLDLSYNRLNGSIPD 455
            +  +L  L L  NR++ S+P+
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 9e-12
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
            +P  +   ++ + + L+ N +S            L  + + +N L  +    F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 392 QILDISDNNISGSLPA-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           + LD+SDN    S+    FH L  +  +HL +  L  +L  G F   ++L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 450 NGSIPD 455
             ++PD
Sbjct: 142 Q-ALPD 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 2/110 (1%)

Query: 19  MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN 78
           + +L+YL L D+    + D     L +L  L++  N +          + SL  L +  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 79  QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENN 128
           ++   +       L  +  L L  N+    +  E       L++    +N
Sbjct: 188 RVA-HVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW-CLANMTSLRILDV 75
             +  L  L L       +       L  LQ LY+ +N L+ +LP     ++ +L  L +
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL 160

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
             N+++ S+       L S++ L+L  N     +    F +  RL   Y   N +
Sbjct: 161 HGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW-CLANMTSLRILDVS 76
           +  +L  L L  +  +RI       L  L++L + +N    S+       +  L  L + 
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
              L   +       L +++ L L +N  Q  +  + F +   L   +   N+I
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            + + + L  +  S +      +  +L  L++ +N L          +  L  LD+S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP--FFNHSRLKFFYAENNQI 130
              S+  +    L  +  L L     Q    L P  F   + L++ Y ++N +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
            + +L +L L  +  S + +R    L  L  L +  N +    P    ++  L  L + +
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
           N L+ ++ +  L  L +++ L L++N + 
Sbjct: 211 NNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.8 bits (244), Expect = 9e-23
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 23/242 (9%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSL---YVFNNSMNALDGSIPSSFGNMKFLQILDL 275
           K L  L +  N     I       L  L   Y+  N +  L   +P +      LQ L +
Sbjct: 76  KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKT------LQELRV 128

Query: 276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN--FNLANLKLLQLEGNRFVGEI 333
             N +T ++ + +  G   +  + L  N L+           +  L  +++        I
Sbjct: 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 186

Query: 334 PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393
           PQ L    SL  LHL+ N ++      L  L  L  + +  N +  +          L+ 
Sbjct: 187 PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 394 LDISDNNISGSLPACFHPL-SIKQVHLSKNMLH-----GQLKRGTFFNCSSLVTLDLSYN 447
           L +++N +   +P        I+ V+L  N +           G     +S   + L  N
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 448 RL 449
            +
Sbjct: 304 PV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 7e-22
 Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 17/239 (7%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
            +L  L +S N  +  +P ++   L  L V  N +  +     S F  +  + +++L  N
Sbjct: 100 VKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVR---KSVFNGLNQMIVVELGTN 155

Query: 279 HLT-GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSL 337
            L    I      G   L  + +++ N+   +        +L  L L+GN+       SL
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASL 212

Query: 338 SKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS 397
              ++L  L L+ NS+S      L N   L+ + + NN L   +P        +Q++ + 
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271

Query: 398 DNNISGSLPACFHPL-------SIKQVHLSKNML-HGQLKRGTFFNCSSLVTLDLSYNR 448
           +NNIS      F P        S   V L  N + + +++  TF        + L   +
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 62/366 (16%), Positives = 127/366 (34%), Gaps = 79/366 (21%)

Query: 45  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 104
           HL+ +   +  L   +P  L       +LD+ +N++T  I      +L ++  L+L NN 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 105 FQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPK 164
               IS   F    +L+  Y   NQ+          +P K                    
Sbjct: 88  ISK-ISPGAFAPLVKLERLYLSKNQL--------KELPEK----------------MPKT 122

Query: 165 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLL 224
                  L+ + +   ++  +    +     ++I + +                  L+  
Sbjct: 123 -------LQELRVHENEIT-KVRKSVFNGLNQMIVVEL--------------GTNPLKSS 160

Query: 225 DISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 284
            I    F+G         +  L     +   +  +IP   G    L  L L  N +T ++
Sbjct: 161 GIENGAFQG---------MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KV 207

Query: 285 PEHLAVGCVNLESLALSNNNL---EGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCS 341
                 G  NL  L LS N++   +    +   N  +L+ L L  N+ V ++P  L+   
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLA---NTPHLRELHLNNNKLV-KVPGGLADHK 263

Query: 342 SLEGLHLNNNSLSG------RIPRWLGNLTWLQYIIMPNNHLE--GLIPVEFCQLDSLQI 393
            ++ ++L+NN++S         P +         + + +N ++   + P  F  +     
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 394 LDISDN 399
           + + + 
Sbjct: 324 VQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 53/319 (16%), Positives = 103/319 (32%), Gaps = 72/319 (22%)

Query: 19  MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANM-TSLRILDVSS 77
           + +L  L L ++  S+I       LV L+ LY+  N L+  LP     M  +L+ L V  
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELP---EKMPKTLQELRVHE 130

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQINAEITQ 136
           N++T  +  S    L  +  + L  N  +   I    F    +L +    +  I      
Sbjct: 131 NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI------ 183

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
             + IP                    P        L  + L   K+  +     L+    
Sbjct: 184 --TTIPQG----------------LPPS-------LTELHLDGNKIT-KVDAASLKGLNN 217

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNAL 256
           L +L +              S   +    +   +             P L   + + N L
Sbjct: 218 LAKLGL--------------SFNSIS--AVDNGSLAN---------TPHLRELHLNNNKL 252

Query: 257 DGSIPSSFGNMKFLQILDLSNNHLT-----GEIPEHLAVGCVNLESLALSNNNLEGHMFS 311
              +P    + K++Q++ L NN+++        P        +   ++L +N ++     
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 312 RN--FNLANLKLLQLEGNR 328
            +    +     +QL   +
Sbjct: 312 PSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHL 377
           +L+++Q        ++P+ L        L L NN ++        NL  L  +I+ NN +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 437
             + P  F  L  L+ L +S N +   LP    P +++++ + +N +  ++++  F   +
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEIT-KVRKSVFNGLN 145

Query: 438 SLVTLDLSYNRLN 450
            ++ ++L  N L 
Sbjct: 146 QMIVVELGTNPLK 158

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.3 bits (243), Expect = 1e-22
 Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 18/223 (8%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
             L+ + I        +P  +      L     + N L  ++P+S  ++  L+ L +   
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

Query: 279 HLTGEIPEHLA--------VGCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRF 329
               E+PE LA         G VNL+SL L    +       +  NL NLK L++  +  
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPL 218

Query: 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN-NHLEGLIPVEFCQL 388
              +  ++     LE L L   +     P   G    L+ +I+ + ++L  L P++  +L
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRL 276

Query: 389 DSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKR 430
             L+ LD+        LP+    L +   + +  ++     + 
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 3e-21
 Identities = 58/367 (15%), Positives = 103/367 (28%), Gaps = 66/367 (17%)

Query: 21  SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQL 80
             + L    S + R     L      Q  Y  + +      W  AN  + +I   +   L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQ---WQRHYNADRNRW-HSAWRQANSNNPQIETRTGRAL 68

Query: 81  TGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQIN---AEITQ 136
             +              L L +      P   +  F  S L+    +   +      + Q
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMELPDTMQQ 125

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
              L      L+R  L +        P  +   + L  + +       E P         
Sbjct: 126 FAGLE--TLTLARNPLRA-------LPASIASLNRLRELSIRACPELTELP--------- 167

Query: 197 LIQLSVVNDSLAGPFRLPIHSH-KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
                   + LA       H     L+ L +     R  +P  I + L +L       + 
Sbjct: 168 --------EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSP 217

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFN 315
           L  ++  +  ++  L+ LDL         P     G   L+ L L + +           
Sbjct: 218 LS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCS----------- 264

Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
                   L        +P  + + + LE L L       R+P  +  L     I++P +
Sbjct: 265 -------NLL------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 376 HLEGLIP 382
               L  
Sbjct: 312 LQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 9e-21
 Identities = 45/302 (14%), Positives = 91/302 (30%), Gaps = 48/302 (15%)

Query: 165 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLL 224
             +H    E +          +   L    ++  +    + +         +S+   ++ 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNN-PQIE 61

Query: 225 DISTNNFRGHIPVEIGD-VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 283
             +    +      + D   P           L    P     +  LQ + +    L  E
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 284 IPEHLAVGCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSKCS- 341
           +P+ +      LE+L L+ N L       +  +L  L+ L +     + E+P+ L+    
Sbjct: 119 LPDTMQ-QFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 342 --------SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393
                   +L+ L L    +   +P  + NL  L+ + + N+ L  L       L  L+ 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEE 233

Query: 394 LDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 453
           LD+       + P                          F   + L  L L       ++
Sbjct: 234 LDLRGCTALRNYPP------------------------IFGGRAPLKRLILKDCSNLLTL 269

Query: 454 PD 455
           P 
Sbjct: 270 PL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.2 bits (209), Expect = 4e-18
 Identities = 56/331 (16%), Positives = 107/331 (32%), Gaps = 37/331 (11%)

Query: 91  HLTSIEELMLSNNHFQIPISLEPFFNH-SRLKFFYAENNQINAEITQSHSLIPPKFQLSR 149
           H +  E L    +      +L P+ +  S+ +  Y  +        +  +   P+ +   
Sbjct: 10  HSSGRENLYFQGST-----ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 150 LSLSSGYEDGVTFPKFLYH--QHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSL 207
                           L    Q     ++L  + +  +FP       + L  +++    L
Sbjct: 65  GRALK------ATADLLEDATQPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGL 116

Query: 208 AGPFRLP--IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFG 265
                LP  +     L  L ++ N  R  +P  I   L  L   +         +P    
Sbjct: 117 M---ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLA 171

Query: 266 NMKF---------LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF-N 315
           +            LQ L L    +   +P  +A    NL+SL + N+ L          +
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA--LGPAIHH 227

Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
           L  L+ L L G   +   P      + L+ L L + S    +P  +  LT L+ + +   
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLP 406
                +P    QL +  I+ +  +  +    
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 46/292 (15%), Positives = 81/292 (27%), Gaps = 59/292 (20%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           + P    L L               L HLQ + ID   L   LP  +     L  L ++ 
Sbjct: 79  TQPGRVALELRS-VPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR 136

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N L  ++ +S +  L  + EL +                            ++       
Sbjct: 137 NPLR-ALPAS-IASLNRLRELSIRA------------------------CPELTE----- 165

Query: 138 HSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 197
              +P     +                      +L+ + L    +    P   + N   L
Sbjct: 166 ---LPEPLASTDA------------SGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNL 208

Query: 198 IQLSVVNDSLAGPFRLP--IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN-NSMN 254
             L + N  L+    L   IH   +L  LD+       + P   G     L        +
Sbjct: 209 KSLKIRNSPLSA---LGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCS 264

Query: 255 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE 306
            L  ++P     +  L+ LDL        +P  +A        + +  +   
Sbjct: 265 NL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 35/200 (17%)

Query: 258 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLA 317
           GS      +    + L    +       + L+      +    ++ N   H   R  N  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRW-HSAWRQANSN 56

Query: 318 NLKLLQLEGNRFVGEIPQSLSKCSS--LEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
           N ++    G          L   +      L L +  L  + P     L+ LQ++ +   
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFN 435
            L  L P    Q   L+ L ++ N +  +LPA                        +  +
Sbjct: 115 GLMEL-PDTMQQFAGLETLTLARNPLR-ALPA------------------------SIAS 148

Query: 436 CSSLVTLDLSYNRLNGSIPD 455
            + L  L +        +P+
Sbjct: 149 LNRLRELSIRACPELTELPE 168

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 16/209 (7%)

Query: 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN 302
                +   + ++L  ++ S   +   ++ LDLS N L+ +I          LE L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 303 NNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLG 362
           N L  +      +L+ L+ L L  N       Q L    S+E LH  NN++S R+     
Sbjct: 68  NVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CS 117

Query: 363 NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG-SLPACFHPL-SIKQVHLS 420
                + I + NN +  L  ++      +Q LD+  N I   +         +++ ++L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
            N ++  +K       + L TLDLS N+L
Sbjct: 178 YNFIY-DVKGQVV--FAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.1 bits (237), Expect = 6e-22
 Identities = 40/242 (16%), Positives = 91/242 (37%), Gaps = 17/242 (7%)

Query: 215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 274
             +  + ++  ++ ++ +      +     ++   + S N L     +       L++L+
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 275 LSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIP 334
           LS+N L  E  +        L +L L+NN +            +++ L    N     + 
Sbjct: 65  LSSNVLY-ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVS 115

Query: 335 QSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL-IPVEFCQLDSLQI 393
              S+    + ++L NN ++       G  + +QY+ +  N ++ +         D+L+ 
Sbjct: 116 --CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 394 LDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 453
           L++  N I   +        +K + LS N L        F + + +  + L  N+L   I
Sbjct: 174 LNLQYNFIY-DVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 454 PD 455
             
Sbjct: 230 EK 231

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 49/344 (14%)

Query: 12  LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
           +  I ++    K   ++DS+  + L     S  +++EL +  N L       LA  T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 72  ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN 131
           +L++SSN L     +  L  L+++  L L+NN+      ++       ++  +A NN I+
Sbjct: 62  LLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNIS 112

Query: 132 AEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 191
                   +   + Q                          + + L++ K+         
Sbjct: 113 -------RVSCSRGQG------------------------KKNIYLANNKIT-MLRDLDE 140

Query: 192 ENNTKLIQLSVVNDSLAG-PFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250
              +++  L +  + +    F     S   L  L++  N     +  ++      L   +
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLD 197

Query: 251 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF 310
            S N L   +   F +   +  + L NN L   I + L     NLE   L  N       
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGT 253

Query: 311 SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS 354
            R+F   N ++  +          Q+  +C+     H       
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 37/279 (13%), Positives = 100/279 (35%), Gaps = 19/279 (6%)

Query: 172 LEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNF 231
            +   ++   +  +    L ++   + +L +  + L+      +    +L LL++S+N  
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 232 RGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 291
                 ++   L +L   + + N +             ++ L  +NN+++  +       
Sbjct: 71  Y-ETL-DLES-LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--- 118

Query: 292 CVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG-EIPQSLSKCSSLEGLHLNN 350
               +++ L+NN +           + ++ L L+ N        +  +   +LE L+L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH 410
           N +   +   +     L+ + + +N L   +  EF     +  + + +N +   +     
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 411 PL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 448
              +++   L  N  H    R  F     + T+     +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 57/360 (15%), Positives = 97/360 (26%), Gaps = 94/360 (26%)

Query: 66  NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYA 125
           N    +I  V+ + L     +S      +++EL LS N     IS       ++L+    
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNL 65

Query: 126 ENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGE 185
            +N +                LS L                        +DL++      
Sbjct: 66  SSNVLYE--------TLDLESLSTL----------------------RTLDLNN------ 89

Query: 186 FPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPS 245
                   N     +              +     +  L  + NN    +    G    +
Sbjct: 90  --------N----YVQE------------LLVGPSIETLHAANNNIS-RVSCSRGQGKKN 124

Query: 246 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305
           +Y+ NN +  L        G    +Q LDL  N +       LA     LE L L  N +
Sbjct: 125 IYLANNKITMLR---DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 306 EGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLT 365
                      A LK L L  N+    +       + +  + L NN L            
Sbjct: 182 Y--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL---------- 228

Query: 366 WLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH 425
                          I        +L+  D+  N         F   + +   ++K  + 
Sbjct: 229 ---------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 17/119 (14%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
           EI Q+ +     +   + ++SL   +     +   ++ + +  N L  +   +      L
Sbjct: 4   EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 392 QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 5/137 (3%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           S  +L++L+L  +    +  +G      L+ L + +N L   +     +   +  + + +
Sbjct: 167 SSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N+L   I  + L    ++E   L  N F      + F  + R++    +  +      + 
Sbjct: 224 NKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 138 HSLIPPKFQLSRLSLSS 154
              +P            
Sbjct: 282 ECTVPTLGHYGAYCCED 298

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 1e-21
 Identities = 50/243 (20%), Positives = 91/243 (37%), Gaps = 23/243 (9%)

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
            LR++  S    +  +P EI      L + NN ++ L       F  ++ L  L L NN 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNK 89

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNLE---GHMFSRNFNLANLKLLQLEGNRFVGEIPQS 336
           ++ +I E        L+ L +S N+L     ++ S      +L  L++  NR        
Sbjct: 90  IS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGV 142

Query: 337 LSKCSSLEGLHLNNNSLSGRI--PRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQIL 394
            S   ++  + +  N L      P     L  L Y+ +    L G+        ++L  L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP---ETLNEL 198

Query: 395 DISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 453
            +  N I             + ++ L  N +   ++ G+     +L  L L  N+L+  +
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 454 PDW 456
           P  
Sbjct: 257 PAG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 26/243 (10%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPS---LYVFNNSMNALDGSIPSSFGNMKFLQILDL 275
           + L  L +  N     I  +    L     LY+  N +  +  ++PSS      L  L +
Sbjct: 78  QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS------LVELRI 130

Query: 276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN-FNLANLKLLQLEGNRFVGEIP 334
            +N +  ++P+ +  G  N+  + +  N LE   F    F+   L  L++   +    IP
Sbjct: 131 HDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP 188

Query: 335 QSLSKCSSLEGLHLNNNSLSGRIPRW-LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393
           + L    +L  LHL++N +   I    L   + L  + + +N +  +       L +L+ 
Sbjct: 189 KDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 394 LDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTF------FNCSSLVTLDLSY 446
           L + +N +S  +PA    L  ++ V+L  N +  ++    F         +    + L  
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 447 NRL 449
           N +
Sbjct: 304 NPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 18/239 (7%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
           ++L+ L IS N+    IP  +   L  L + +N +  +       F  ++ +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVP---KGVFSGLRNMNCIEMGGN 157

Query: 279 HLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ-SL 337
            L     E  A   + L  L +S   L   +         L  L L+ N+    I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDL 213

Query: 338 SKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS 397
            + S L  L L +N +       L  L  L+ + + NN L   +P     L  LQ++ + 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 398 DNNIS-------GSLPACFHPLSIKQVHLSKNML-HGQLKRGTFFNCSSLVTLDLSYNR 448
            NNI+         +           + L  N + + +++  TF   +  + +     +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 53/317 (16%), Positives = 103/317 (32%), Gaps = 47/317 (14%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
           P    L L +++ S +       L HL  L + NN +        + +  L+ L +S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHS 139
           L       P    +S+ EL + +N  +  +    F     +       N +     +  +
Sbjct: 114 LV----EIPPNLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 140 LIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQ 199
               K  L+ L +S     G+           L  + L H   N               +
Sbjct: 169 FDGLK--LNYLRISEAKLTGIPKDLP----ETLNELHLDH---N---------------K 204

Query: 200 LSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGS 259
           +  +           +  + +L  L +  N  R  I       LP+L   +   N L   
Sbjct: 205 IQAIELED-------LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 260 IPSSFGNMKFLQILDLSNNHLTGEIPE------HLAVGCVNLESLALSNNNLEGHMFSRN 313
           +P+   ++K LQ++ L  N++T ++           V       ++L NN +        
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 314 --FNLANLKLLQLEGNR 328
               + +   +Q    +
Sbjct: 315 TFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 338 SKCS-SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396
             C   L  +  ++  L   +P+ +        + + NN +  L   +F  L  L  L +
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 397 SDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
            +N IS      F PL  ++++++SKN L  ++        SSLV L +  NR+   +P 
Sbjct: 86  VNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIR-KVPK 140

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 86/449 (19%), Positives = 146/449 (32%), Gaps = 93/449 (20%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLAN 66
              +  ++          L L++   S + +       HL+ L    N L   LP    +
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLT-ELPELPQS 112

Query: 67  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAE 126
           + SL + + +   L+             +E L +SNN  +    L    N S LK    +
Sbjct: 113 LKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKIIDVD 161

Query: 127 NNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEF 186
           NN +                                P        LE++   + ++  E 
Sbjct: 162 NNSLK-----------------------------KLPDLPPS---LEFIAAGNNQLE-EL 188

Query: 187 PTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL 246
           P   L+N   L  +   N+SL     LP      L  +    N        E+ + LP L
Sbjct: 189 PE--LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNIL--EELPELQN-LPFL 239

Query: 247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE 306
                  N L  ++P    +   L+ L++ +N+LT ++PE       +L  L +S N   
Sbjct: 240 TTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ----SLTFLDVSENIFS 290

Query: 307 GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW 366
                 +    NL  L    N     +        SLE L+++NN L   +P     L  
Sbjct: 291 ----GLSELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRLER 341

Query: 367 LQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG 426
           L   I   NHL  +         +L+ L +  N +    P     +   +++     +  
Sbjct: 342 L---IASFNHLAEVPE----LPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEV-- 391

Query: 427 QLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
                      +L  L +  N L    PD
Sbjct: 392 ------PELPQNLKQLHVETNPLR-EFPD 413

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 90/412 (21%), Positives = 145/412 (35%), Gaps = 72/412 (17%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLAN 66
            + + L  + E   SLK L + ++N   + D        L+ L + NN L   LP  L N
Sbjct: 98  ASCNSLTELPELPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLE-KLP-ELQN 151

Query: 67  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAE 126
            + L+I+DV +N L             S+E +   NN  +    L    N   L   YA+
Sbjct: 152 SSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLE---ELPELQNLPFLTAIYAD 203

Query: 127 NNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEF 186
           NN +         L      L  +   +   + +     L +   L  +   +  +    
Sbjct: 204 NNSL-------KKLPDLPLSLESIVAGN---NILEELPELQNLPFLTTIYADNNLLK-TL 252

Query: 187 PTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL 246
           P         L  L+V ++ L     LP    + L  LD+S N F       + ++ P+L
Sbjct: 253 PDLP----PSLEALNVRDNYLTDLPELP----QSLTFLDVSENIFS-----GLSELPPNL 299

Query: 247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE 306
           Y  N S N +  S+     +   L+ L++SNN L  E+P         LE L  S N+L 
Sbjct: 300 YYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPP----RLERLIASFNHLA 350

Query: 307 GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK----------------CSSLEGLHLNN 350
                      NLK L +E N    E P                       +L+ LH+  
Sbjct: 351 ----EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405

Query: 351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
           N L    P    ++  L+   M +  +           D L+      ++  
Sbjct: 406 NPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 84/429 (19%), Positives = 144/429 (33%), Gaps = 96/429 (22%)

Query: 41  CSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS------------P 88
            S   LQE    +++L   +P    N+ S      + ++   +                 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 89  LVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQL 147
                   EL L+N     +P           L+   A  N +                 
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELP------PHLESLVASCNSLT---------------- 104

Query: 148 SRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSL 207
                          P+       L   + +           L +    L  L V N+ L
Sbjct: 105 -------------ELPELPQSLKSLLVDNNNLKA--------LSDLPPLLEYLGVSNNQL 143

Query: 208 AGPFRLP-IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGN 266
               +LP + +   L+++D+  N+ +  +P      L  +   NN +  L         N
Sbjct: 144 E---KLPELQNSSFLKIIDVDNNSLK-KLPDLPPS-LEFIAAGNNQLEELP-----ELQN 193

Query: 267 MKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEG 326
           + FL  +   NN L  ++P+      ++LES+   NN LE        NL  L  +  + 
Sbjct: 194 LPFLTAIYADNNSLK-KLPDLP----LSLESIVAGNNILE--ELPELQNLPFLTTIYADN 246

Query: 327 NRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFC 386
           N     +P       SLE L++ +N L+  +P    +LT+L       + L  L P    
Sbjct: 247 NLLK-TLPDLP---PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP---- 297

Query: 387 QLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 446
              +L  L+ S N I  SL     P S++++++S N L              L  L  S+
Sbjct: 298 ---NLYYLNASSNEIR-SLCD--LPPSLEELNVSNNKL-----IELPALPPRLERLIASF 346

Query: 447 NRLNGSIPD 455
           N L   +P+
Sbjct: 347 NHLA-EVPE 354

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 26/177 (14%), Positives = 47/177 (26%), Gaps = 43/177 (24%)

Query: 312 RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII 371
           RN +   L+      +    E+P       S    +   +      P   G    +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 372 MPNNHLEGL--------------------------------IPVEFCQLDSLQILDISDN 399
           + +                                      +P     L SL + + +  
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 124

Query: 400 NISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
            +S   P       ++ + +S N L    K     N S L  +D+  N L   +PD 
Sbjct: 125 ALSDLPP------LLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLK-KLPDL 171

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 2e-19
 Identities = 48/242 (19%), Positives = 84/242 (34%), Gaps = 55/242 (22%)

Query: 212 RLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 271
            L      Q   L ++  N    +P  +   +  L +  N++     S+P    +   L+
Sbjct: 52  LLKECLINQFSELQLNRLNLS-SLPDNLPPQITVLEITQNAL----ISLPELPAS---LE 103

Query: 272 ILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG 331
            LD  +N L+  +PE  A    +L+ L + NN L           A L+ +  + N+   
Sbjct: 104 YLDACDNRLS-TLPELPA----SLKHLDVDNNQLT----MLPELPALLEYINADNNQLT- 153

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
            +P+  +   SLE L + NN L+  +P    +L  L    +  N LE L P    +    
Sbjct: 154 MLPELPT---SLEVLSVRNNQLT-FLPELPESLEALD---VSTNLLESL-PAVPVRNHHS 205

Query: 392 Q----ILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447
           +         +N I+  +P                            +     T+ L  N
Sbjct: 206 EETEIFFRCRENRIT-HIPENI------------------------LSLDPTCTIILEDN 240

Query: 448 RL 449
            L
Sbjct: 241 PL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 4e-19
 Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 29/217 (13%)

Query: 213 LPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272
           LP +   Q+ +L+I+ N     +P      L  L   +N ++ L    P    +   L+ 
Sbjct: 74  LPDNLPPQITVLEITQNALI-SLPELPAS-LEYLDACDNRLSTL----PELPAS---LKH 124

Query: 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE 332
           LD+ NN LT  +PE  A     LE +   NN L            +L++L +  N+    
Sbjct: 125 LDVDNNQLT-MLPELPA----LLEYINADNNQLT----MLPELPTSLEVLSVRNNQL-TF 174

Query: 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQ----YIIMPNNHLEGLIPVEFCQL 388
           +P+      SLE L ++ N L   +P         +    +     N +  + P     L
Sbjct: 175 LPELPE---SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSL 229

Query: 389 DSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH 425
           D    + + DN +S S           Q       ++
Sbjct: 230 DPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 8e-14
 Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 18/166 (10%)

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
            L+ LD+  N     +P      L  +   NN +  L     S       L++L + NN 
Sbjct: 121 SLKHLDVDNNQLT-MLPELPAL-LEYINADNNQLTMLPELPTS-------LEVLSVRNNQ 171

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNLEG--HMFSRNFNLANLKL-LQLEGNRFVGEIPQS 336
           LT  +PE       +LE+L +S N LE    +  RN +    ++  +   NR    IP++
Sbjct: 172 LT-FLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 337 LSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIP 382
           +        + L +N LS RI   L   T       P  +      
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 54/346 (15%), Positives = 100/346 (28%), Gaps = 86/346 (24%)

Query: 21  SLKYLSLSDSNSSRILDR-GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
             +  +L   N +  +     C +    EL ++  +L  SLP  L     + +L+++ N 
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNA 91

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQINAEITQSH 138
           L  S+   P     S+E L   +N    +P         + LK    +NNQ+        
Sbjct: 92  LI-SLPELP----ASLEYLDACDNRLSTLPELP------ASLKHLDVDNNQL-------- 132

Query: 139 SLIPPKF-QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 197
           +++P     L  ++                                         NN   
Sbjct: 133 TMLPELPALLEYINAD---------------------------------------NN--- 150

Query: 198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALD 257
            QL+++ +               L +L +  N     +P      L +L V  N + +L 
Sbjct: 151 -QLTMLPELP-----------TSLEVLSVRNNQLT-FLPELPES-LEALDVSTNLLESLP 196

Query: 258 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLA 317
                +  + +         N +T  IPE++        ++ L +N L   +        
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGL---HLNNNSLSGRIPRW 360
                      F     Q  +    L          N  S     W
Sbjct: 255 AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 30/192 (15%)

Query: 12  LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
           L ++ E    L+Y++  ++  + + +        L+ L + NN L   LP       SL 
Sbjct: 132 LTMLPELPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLT-FLP---ELPESLE 183

Query: 72  ILDVSSNQLTGSISSSP--LVHLTSIE-ELMLSNNHF-QIPISLEPFFNHSRLKFFYAEN 127
            LDVS+N L  S+ + P    H    E       N    IP ++    +         E+
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPENI---LSLDPTCTIILED 239

Query: 128 NQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFP 187
           N +++           +  LS+ +    Y     +      Q +  +  L+         
Sbjct: 240 NPLSS---------RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA---- 286

Query: 188 TWLLENNTKLIQ 199
            W  EN    + 
Sbjct: 287 -WFPENKQSDVS 297

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.6 bits (220), Expect = 4e-19
 Identities = 63/406 (15%), Positives = 134/406 (33%), Gaps = 54/406 (13%)

Query: 46  LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
                    +++ +       + +L  LD  ++ +T     + +  LT + +L+ ++N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 106 QIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKF-QLSRLSLSSGYEDGVTFPK 164
              I+      ++ L +   ++N++        +L      +L+ L+  +     +   +
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLT-------NLDVTPLTKLTYLNCDTNKLTKLDVSQ 125

Query: 165 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLL 224
                  L Y++ +   +        + +NT+L +L    +       L +    QL  L
Sbjct: 126 N----PLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITK--LDVTPQTQLTTL 175

Query: 225 DISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI 284
           D S N     + V    +L  L    N++  LD            L  LD S+N LT EI
Sbjct: 176 DCSFNKIT-ELDVSQNKLLNRLNCDTNNITKLD------LNQNIQLTFLDCSSNKLT-EI 227

Query: 285 PEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLE 344
                     L     S N L     S    L+ L  L       + EI   L+  + L 
Sbjct: 228 DVT---PLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLL-EID--LTHNTQLI 278

Query: 345 GLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGS 404
                       +   + + T L  +      +  L   +  Q   L  L +++  ++  
Sbjct: 279 YFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-E 332

Query: 405 LPACFHPLSIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYNRL 449
           L    +   +K +          ++   +     +L     +  + 
Sbjct: 333 LDVSHNT-KLKSLSCVNA----HIQDFSSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 47/238 (19%), Positives = 72/238 (30%), Gaps = 27/238 (11%)

Query: 213 LPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272
           +       L  LD   ++      +E    L  L   +N++  LD            L  
Sbjct: 36  ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD------LSQNTNLTY 89

Query: 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE 332
           L   +N LT  +          L  L    N L     S       L  L    N    E
Sbjct: 90  LACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLT-E 141

Query: 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392
           I   +S  + L  L  + N    ++   +   T L  +    N +  L   +  Q   L 
Sbjct: 142 ID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLN 194

Query: 393 ILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
            L+   NNI+  L    +   +  +  S N    +L        + L   D S N L 
Sbjct: 195 RLNCDTNNIT-KLDLNQNI-QLTFLDCSSN----KLTEIDVTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 47/291 (16%), Positives = 85/291 (29%), Gaps = 40/291 (13%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
                L  L    +     LD  +     L  L    N +   L   ++    L  L+  
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCD 199

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
           +N +T       L     +  L  S+N     ++       ++L +F    N +      
Sbjct: 200 TNNIT----KLDLNQNIQLTFLDCSSNK----LTEIDVTPLTQLTYFDCSVNPLT----- 246

Query: 137 SHSLIPPKF-QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 195
              L      +L+ L         +           L Y      +   E     + +NT
Sbjct: 247 --ELDVSTLSKLTTLHCIQTDLLEIDLTHNT----QLIYFQAEGCRKIKELD---VTHNT 297

Query: 196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
           +L  L      +     L +  + +L  L ++       + V     L SL   N  +  
Sbjct: 298 QLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDVSHNTKLKSLSCVNAHIQD 353

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE 306
                 SS G +  L     +         E L     N  ++A+S + L+
Sbjct: 354 F-----SSVGKIPALNNNFEAEGQTITMPKETLT---NNSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 310 FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQY 369
           F+  F   N                 S  + ++L  L  +N+S++      +  LT L  
Sbjct: 11  FNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTK 68

Query: 370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLK 429
           +I  +N++  L   +  Q  +L  L    N ++ +L        +  ++   N    +L 
Sbjct: 69  LICTSNNITTL---DLSQNTNLTYLACDSNKLT-NLDVT-PLTKLTYLNCDTN----KLT 119

Query: 430 RGTFFNCSSLVTLDLSYNRLN 450
           +        L  L+ + N L 
Sbjct: 120 KLDVSQNPLLTYLNCARNTLT 140

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 5e-19
 Identities = 43/246 (17%), Positives = 92/246 (37%), Gaps = 15/246 (6%)

Query: 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFLQILD 274
                L+ L +++N     I  +    L SL   + S N L  ++ SS F  +  L  L+
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130

Query: 275 LSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEI 333
           L  N         L      L+ L + N +    +  ++F  L  L+ L+++ +      
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 334 PQSLSKCSSLEGLHLNNNSLSGRIPRWL-GNLTWLQYIIMPNNHLEGLIPVE-------- 384
           P+SL    ++  L L+       +        + ++ + + +  L+     E        
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 385 FCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 444
             +  + + + I+D ++   +        + ++  S+N L   +  G F   +SL  + L
Sbjct: 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

Query: 445 SYNRLN 450
             N  +
Sbjct: 309 HTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 8e-19
 Identities = 51/251 (20%), Positives = 103/251 (41%), Gaps = 24/251 (9%)

Query: 221 LRLLDISTNNFRGHIPVEIGDVLPSL---YVFNNSMNALDGSIPSSFGNMKFLQILDLSN 277
           ++ LD+S N    +I         +L    + +N +N ++     SF ++  L+ LDLS 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIE---EDSFSSLGSLEHLDLSY 109

Query: 278 NHLTGEIPEHLAVGCVNLESLALSNNNL----EGHMFSRNFNLANLKLLQLEGNRFVGEI 333
           N+L+  +         +L  L L  N      E  +FS   +L  L++L++       +I
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKI 165

Query: 334 P-QSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392
             +  +  + LE L ++ + L    P+ L ++  + ++I+       L+ +      S++
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 393 ILDISDNNISG----SLPACFHPLSIKQVHLSKNMLHGQLKR---GTFFNCSSLVTLDLS 445
            L++ D ++       L        IK+       +  +            S L+ L+ S
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 446 YNRLNGSIPDW 456
            N+L  S+PD 
Sbjct: 286 RNQLK-SVPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 54/337 (16%), Positives = 98/337 (29%), Gaps = 51/337 (15%)

Query: 9   TSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSL-----VHLQELYIDNNDLRGSLPWC 63
              + +  E   +   LS   +   +     L S+       ++ L + NN +       
Sbjct: 12  GVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD 71

Query: 64  LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFF 123
           L    +L+ L ++SN +  +I       L S+E L LS N+    +S   F   S L F 
Sbjct: 72  LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFL 129

Query: 124 YAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMN 183
               N            +      S L+              L           + I   
Sbjct: 130 NLLGNPYKT--------LGETSLFSHLTK-------------LQILRVGNMDTFTKI--- 165

Query: 184 GEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVL 243
                      T L +L +    L       + S + +  L +        +     DV 
Sbjct: 166 ---QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT 221

Query: 244 PSL--------YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 295
            S+         +     + L     +S       + + +++  L       L      L
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGL 279

Query: 296 ESLALSNNNLEG---HMFSRNFNLANLKLLQLEGNRF 329
             L  S N L+     +F     L +L+ + L  N +
Sbjct: 280 LELEFSRNQLKSVPDGIFD---RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 51/275 (18%), Positives = 97/275 (35%), Gaps = 25/275 (9%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            ++K L LS++  + I +  L   V+LQ L + +N +        +++ SL  LD+S N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHS 139
           L+ ++SSS    L+S+  L L  N ++       F + ++L+     N     +I     
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QRK 168

Query: 140 LIPPKFQLSRLSLS----SGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 195
                  L  L +       YE        L    ++ ++ L   +         ++  +
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKS-----LKSIQNVSHLILHMKQHI-LLLEIFVDVTS 222

Query: 196 KLIQLSVVNDSL---------AGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL 246
            +  L + +  L          G     I      R + I+  +    + +     +  L
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKF-TFRNVKITDESLFQVMKLLNQ--ISGL 279

Query: 247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 281
                S N L       F  +  LQ + L  N   
Sbjct: 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392
           IP  L+   +++ L L+NN ++      L     LQ +++ +N +  +    F  L SL+
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 393 ILDISDNNISGSLPA-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
            LD+S N +S +L +  F PL S+  ++L  N      +   F + + L  L +      
Sbjct: 104 HLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 451 GSIPD 455
             I  
Sbjct: 163 TKIQR 167

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.0 bits (205), Expect = 7e-18
 Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 18/223 (8%)

Query: 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV-NLESLALS 301
           L  L V    + +           +  LQ L L N  +TG  P  L      +L  L L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 302 NNNLEGHMFS----RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRI 357
           N +           + +    LK+L +     +    + +    +L  L L++N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 358 PRW----LGNLTWLQYIIMPNNHLEGL---IPVEFCQLDSLQILDISDNNISGSLPA--C 408
                        LQ + + N  +E               LQ LD+S N++  +  A  C
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 409 FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451
             P  +  ++LS   L  Q+ +G     + L  LDLSYNRL+ 
Sbjct: 250 DWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 4e-17
 Identities = 58/303 (19%), Positives = 88/303 (29%), Gaps = 15/303 (4%)

Query: 63  CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKF 122
           C  N +  +    S+    G+          S+E L+   +                LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 123 FYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQH-DLEYVDLSHIK 181
                 +I + I      +     L  L+L +    G   P  L     DL  ++L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 182 MNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLP---IHSHKQLRLLDISTNNFRGHIPVE 238
                             L V++ + A         +     L  LD+S N   G   + 
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 239 IGDV------LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGC 292
                     L  L + N  M    G   +       LQ LDLS+N L            
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 293 VNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNS 352
             L SL LS   L+  +       A L +L L  NR     P    +   +  L L  N 
Sbjct: 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNP 307

Query: 353 LSG 355
              
Sbjct: 308 FLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 4e-16
 Identities = 50/276 (18%), Positives = 82/276 (29%), Gaps = 21/276 (7%)

Query: 190 LLENNTKLIQLSVVNDSLAGPFRLPIHSHK-QLRLLDISTNNFRGHIPVEIGDVLPSLYV 248
           L      L  L    D+ A   +         L+ L +        I      VL    +
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 249 FNNSM--NALDGSIPSSFGNMKF--LQILDLSNNHLTG---EIPEHLAVGCVNLESLALS 301
              ++    + G+ P          L IL+L N         + E        L+ L+++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 302 NNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC----SSLEGLHLNNN---SLS 354
             +       +      L  L L  N  +GE     + C     +L+ L L N    + S
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 355 GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQ-LDSLQILDISDNNISGSLPACFHPLS 413
           G           LQ + + +N L        C     L  L++S   +   +P    P  
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-PAK 275

Query: 414 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           +  + LS N L              +  L L  N  
Sbjct: 276 LSVLDLSYNRLDRNPSPDEL---PQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 8e-14
 Identities = 43/264 (16%), Positives = 81/264 (30%), Gaps = 30/264 (11%)

Query: 171 DLEYVDLSHIKMNGEFPTWLLE--NNTKLIQLSVVNDSLAGPFRLPIHSH-----KQLRL 223
            L+ + +   ++        L     + L +L++ N  + G    P+          L L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 224 LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 283
            ++S       +      + P L V + +                 L  LDLS+N   GE
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 284 IPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL 343
                A+  +   +L             +   L N  +    G           +    L
Sbjct: 189 RGLISALCPLKFPTL-------------QVLALRNAGMETPSG-----VCSALAAARVQL 230

Query: 344 EGLHLNNNSLSGRIPRWL-GNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
           +GL L++NSL            + L  + +    L+ +          L +LD+S N + 
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLD 287

Query: 403 GSLPACFHPLSIKQVHLSKNMLHG 426
              P+      +  + L  N    
Sbjct: 288 -RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 18/224 (8%)

Query: 249 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGH 308
           ++++ N L  +    +G  + L+ L    +           +  ++L+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 309 MFS---RNFNLANLKLLQLEGNRFVGEIPQSLSKCS--SLEGLHLNNNSLSGRIPRWLGN 363
           +     R   ++ L+ L LE     G  P  L + +   L  L+L N S +     WL  
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 364 L-----TWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLP----ACFHPL-S 413
           L       L+ + +   H       +     +L  LD+SDN   G        C     +
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 414 IKQVHLSKNMLH--GQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           ++ + L    +     +          L  LDLS+N L  +   
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 3e-12
 Identities = 53/295 (17%), Positives = 89/295 (30%), Gaps = 61/295 (20%)

Query: 21  SLKYLSLSDSNSSRILDRG---LCSLVHLQELYIDNNDLRGSLPW-----CLANMTSLRI 72
           SLK L++  +     +  G   +  +  LQEL ++N ++ G+ P         ++  L +
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 73  LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINA 132
            +VS       ++         ++ L ++  H     S E       L      +N    
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELG 187

Query: 133 EITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE 192
           E     +L P KF                          L+ + L +  M          
Sbjct: 188 ERGLISALCPLKFP------------------------TLQVLALRNAGME--------- 214

Query: 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNS 252
                        + +G       +  QL+ LD+S N+ R        D    L   N S
Sbjct: 215 -------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 253 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEG 307
              L             L +LDLS N L    P         + +L+L  N    
Sbjct: 262 FTGLKQVPKGLPAK---LSVLDLSYNRLD-RNPSPD--ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 8   NTSFLQIIGESMPSLKYLSLSDSN--SSRILDRGLC--SLVHLQELYIDNNDLR---GSL 60
           + +F        P+L  L LSD+     R L   LC      LQ L + N  +    G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 61  PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
               A    L+ LD+S N L  +  +      + +  L LS    +
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 6/131 (4%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLP----W 62
            +    ++     P LK LS++ ++S       +     L  L + +N   G        
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 63  CLANMTSLRILDVSSNQLT--GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRL 120
           C     +L++L + +  +     + S+       ++ L LS+N  +           S+L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 121 KFFYAENNQIN 131
                    + 
Sbjct: 256 NSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 11/155 (7%)

Query: 9   TSFLQIIGESMPSLKYLSLSD----SNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCL 64
           T+   ++  + P L  L+L +    +  + + +        L+ L I            +
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 65  ANMTSLRILDVSSNQLTGSIS---SSPLVHLTSIEELMLSNNHFQIPISLEP--FFNHSR 119
               +L  LD+S N   G      +   +   +++ L L N   + P  +         +
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229

Query: 120 LKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSS 154
           L+     +N +           P +  L+ L+LS 
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQ--LNSLNLSF 262

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVH--LQELYIDNNDLRGSLPWCLA----NMTSLR 71
            +  L+ L+L +   +      L       L  L + N        W           L+
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 72  ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFF---NHSRLKFFYAENN 128
           +L ++      + S   +    ++  L LS+N       L           L+     N 
Sbjct: 153 VLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 129 QINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSH 179
            +        +L   + QL  L LS                  L  ++LS 
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 11/121 (9%)

Query: 14  IIGESMPSLKYLSLSD---SNSSRILDRGLCSLVHLQELYIDNNDLRGSLP-WCLANMTS 69
           +     P+L+ L+L +      S +      + V LQ L + +N LR +         + 
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 70  LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQ 129
           L  L++S   L       P      +  L LS N               ++     + N 
Sbjct: 255 LNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNP 307

Query: 130 I 130
            
Sbjct: 308 F 308

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 13/195 (6%)

Query: 261 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFNLA 317
             SF +   LQ+LDLS   +   I +       +L +L L+ N +       FS    L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS---GLS 100

Query: 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSL-SGRIPRWLGNLTWLQYIIMPNNH 376
           +L+ L              +    +L+ L++ +N + S ++P +  NLT L+++ + +N 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 377 LEGLIPVEFCQLDSLQI----LDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGT 432
           ++ +   +   L  + +    LD+S N ++   P  F  + +K++ L  N L   +  G 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGI 219

Query: 433 FFNCSSLVTLDLSYN 447
           F   +SL  + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 24/206 (11%)

Query: 260 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFNL 316
           +P S       + LDLS N L   +  +       L+ L LS   +   E   +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH 376
           ++L  L L GN        + S  SSL+ L     +L+      +G+L  L+ + + +N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 377 LEGLIPVE-FCQLDSLQILDISDNNISGSLPA-CFHPLS-----IKQVHLSKNMLHGQLK 429
           ++     E F  L +L+ LD+S N I  S+       L         + LS N ++  ++
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ 193

Query: 430 RGTFFNCSSLVTLDLSYNRLNGSIPD 455
            G F     L  L L  N+L  S+PD
Sbjct: 194 PGAFKE-IRLKELALDTNQLK-SVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 53/284 (18%), Positives = 90/284 (31%), Gaps = 77/284 (27%)

Query: 44  VHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 103
              + L +  N LR    +   +   L++LD+S  ++  +I       L+ +  L+L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 104 HFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFP 163
             Q  ++L  F   S L+   A    +                    SL +     +   
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNLA-------------------SLENFPIGHLKTL 126

Query: 164 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRL 223
           K L     + +  +   K+   F                   +L             L  
Sbjct: 127 KELN----VAHNLIQSFKLPEYF------------------SNLT-----------NLEH 153

Query: 224 LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 283
           LD+S+N  +  I      VL  + + N S                    LDLS N +   
Sbjct: 154 LDLSSNKIQ-SIYCTDLRVLHQMPLLNLS--------------------LDLSLNPMN-F 191

Query: 284 IPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGN 327
           I    A   + L+ LAL  N L+         L +L+ + L  N
Sbjct: 192 IQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            S K L LS +    +      S   LQ L +   +++        +++ L  L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHS 139
           +  S++      L+S+++L+    +    +   P  +   LK     +N I        S
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLI-------QS 138

Query: 140 LIPPKF-----QLSRLSLSS 154
              P++      L  L LSS
Sbjct: 139 FKLPEYFSNLTNLEHLDLSS 158

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
           +IP +L    S + L L+ N L         +   LQ + +    ++ +    +  L  L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 392 QILDISDNNISGSLPA-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
             L ++ N I  SL    F  L S++++   +  L   L+     +  +L  L++++N +
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136

Query: 450 NGSIP 454
             S  
Sbjct: 137 Q-SFK 140

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 12/119 (10%)

Query: 19  MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW--CLANMTSLRILDVS 76
           + SL+ L   ++N + + +  +  L  L+EL + +N ++ S       +N+T+L  LD+S
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLS 157

Query: 77  SNQLTGSISSSPLVHLTSIE----ELMLSNNHFQIPISLEPF-FNHSRLKFFYAENNQI 130
           SN++  SI  + L  L  +      L LS N       ++P  F   RLK    + NQ+
Sbjct: 158 SNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN---FIQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 3/136 (2%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCS-LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN 78
             L  L L+  N  + L  G  S L  LQ+L     +L     + + ++ +L+ L+V+ N
Sbjct: 76  SHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 79  QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSH 138
            +          +LT++E L LS+N  Q  I         ++       +     +    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 139 SLIPPKFQLSRLSLSS 154
                + +L  L+L +
Sbjct: 194 PGAFKEIRLKELALDT 209

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQ----ELYIDNNDLRGSLPWCLANMTSLRIL 73
           ++ +L++L LS +    I    L  L  +      L +  N +   +         L+ L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKEL 205

Query: 74  DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
            + +NQL  S+       LTS++++ L  N + 
Sbjct: 206 ALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 18/197 (9%)

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN----LEGHMFSRNFNLANLKLLQLE 325
            Q L L   HL   IP H      N+  + +S +     LE H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 326 GNRFVGEIPQS-LSKCSSLEGLHLNNNSLSGRIP--RWLGNLTWLQYI-IMPNNHLEGLI 381
             R +  I    L +   L+ L + N  L    P    + +      + I  N ++  + 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 382 PVEFCQLDS-LQILDISDNNISGSLPAC-FHPLSIKQVHLSKNMLHGQLKRGTFFN-CSS 438
              F  L +    L + +N  + S+    F+   +  V+L+KN     + +  F    S 
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 439 LVTLDLSYNRLNGSIPD 455
              LD+S   +  ++P 
Sbjct: 207 PSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 39/200 (19%), Positives = 81/200 (40%), Gaps = 10/200 (5%)

Query: 221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILDLSNNH 279
            + L +   + R  IP      LP++     S++     + S SF N+  +  +++ N  
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNLEG-HMFSRNFNLANLKLLQLEGNRFVGEIPQSL- 337
               I          L+ L + N  L+     ++ ++     +L++  N ++  IP +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 338 -SKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI-IMPNNHLEGLIPVEFCQLDS-LQIL 394
              C+    L L NN  +  +  +  N T L  + +  N +L  +    F  + S   +L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 395 DISDNNISGSLPA-CFHPLS 413
           D+S  +++ +LP+     L 
Sbjct: 211 DVSQTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 7/118 (5%)

Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
           C   E   +    +  RIP         Q + +   HL  +    F  L ++  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 400 NISGSLPA-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
                L +  F+ L  +  + +        +          L  L +    L    PD
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD 122

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCS-LVHLQELYIDNNDLRGSLP--WCLANMTSLRILD 74
           ++  + ++ + ++ +   +D      L  L+ L I N  L+   P    + +     IL+
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136

Query: 75  VSSNQLTGSISSSPLVHLTS-IEELMLSNNHFQIPISLEPF-FNHSRLKFFY-AENNQI 130
           ++ N    SI  +    L +    L L NN F    S++ + FN ++L   Y  +N  +
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT---SVQGYAFNGTKLDAVYLNKNKYL 192

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 2/113 (1%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW-CLANMTSLRILDVSSN 78
           PS + L L +++   I      +L ++  +Y+  +     L      N++ +  +++ + 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 79  QLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQI 130
           +    I    L  L  ++ L + N   +  P   + +           +N  +
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM 143

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 3/116 (2%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGL-CSLVHLQELYI-DNNDLRGSLPWCLANMTSLRILDV 75
           ++P++  + +S   + + L+     +L  +  + I +  +L    P  L  +  L+ L +
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFN-HSRLKFFYAENNQI 130
            +  L      + +        L +++N +   I +  F    +        NN  
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 46/294 (15%), Positives = 91/294 (30%), Gaps = 75/294 (25%)

Query: 39  GLCSLVHLQELYIDNNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 96
             C     ++  +   D++   SLP       S + L +    L  +I S    +L +I 
Sbjct: 6   PPCECHQEEDFRVTCKDIQRIPSLP------PSTQTLKLIETHLR-TIPSHAFSNLPNIS 58

Query: 97  ELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGY 156
            + +S +     +    F+N S++      N +                 L+ +      
Sbjct: 59  RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR----------------NLTYID----- 97

Query: 157 EDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIH 216
                 P  L     L+++ +               N      L +  D         ++
Sbjct: 98  ------PDALKELPLLKFLGIF--------------NT----GLKMFPDLTK------VY 127

Query: 217 SHKQLRLLDISTNNFRGHIPVEIGDVLPS----LYVFNNSMNALDGSIPSSFGNMKFLQI 272
           S     +L+I+ N +   IPV     L +    L ++NN   ++      +F   K   +
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ---GYAFNGTKLDAV 184

Query: 273 LDLSNNHLTGEIPEHLAVGCVN-LESLALSNNNLE---GHMFSRNFNLANLKLL 322
               N +LT  I +    G  +    L +S  ++            +L  L   
Sbjct: 185 YLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE---HLKELIAR 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.8 bits (189), Expect = 1e-15
 Identities = 41/219 (18%), Positives = 84/219 (38%), Gaps = 18/219 (8%)

Query: 245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN 304
                 + +  +   +P +         L      L   I +    G  +LE + +S N+
Sbjct: 13  VFLCQESKVTEIPSDLPRN------AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQND 65

Query: 305 ----LEGHMFSRNFNLANLKLLQLEGNRFVGEIP-QSLSKCSSLEGLHLNNNSLSGRIPR 359
               +E  +FS   NL  L  +++E    +  I  ++     +L+ L ++N  +      
Sbjct: 66  VLEVIEADVFS---NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 360 WLGNLTWLQYIIMP-NNHLEGLIPVEFCQL-DSLQILDISDNNISGSLPACFHPLSIKQV 417
              +      + +  N ++  +    F  L     IL ++ N I     + F+   + ++
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 418 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
           +LS N    +L    F   S  V LD+S  R++ S+P +
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY 220

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 8e-11
 Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSL-YVFNNSMNALDGSIPSSFGNMKFLQILDLSN 277
             L  ++IS N+    I  ++   LP L  +     N L    P +F N+  LQ L +SN
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

Query: 278 NHLTGEIPEHLAVGCVNLESLALSNNN----LEGHMFSRNFNL-ANLKLLQLEGNRFVGE 332
             +   +P+   +  +    L + +N     +E + F     L     +L L  N     
Sbjct: 114 TGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSFESVILWLNKNGIQEI 169

Query: 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392
              + +     E    +NN+L           +    + +    +  L       L  L+
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229

Query: 393 ILDISDNNISGSLPACFHPLSIKQVHLS 420
                +      LP     +++ +  L+
Sbjct: 230 ARSTYNLK---KLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 43/289 (14%), Positives = 91/289 (31%), Gaps = 65/289 (22%)

Query: 68  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY-AE 126
            +   L     +L   I          +E++ +S N     I  + F N  +L      +
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 127 NNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEF 186
            N +          I                     P+   +  +L+Y+ +S+  +    
Sbjct: 89  ANNL--------LYIN--------------------PEAFQNLPNLQYLLISNTGIK-HL 119

Query: 187 PTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSL 246
           P     ++ + + L + ++               + +  I  N+F G            L
Sbjct: 120 PDVHKIHSLQKVLLDIQDN---------------INIHTIERNSFVGL-----SFESVIL 159

Query: 247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE 306
           ++  N +  +     S+F   +  ++    NN+L  E+P  +  G      L +S   + 
Sbjct: 160 WLNKNGIQEIH---NSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215

Query: 307 ---GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNS 352
               +      NL  L+       +   ++P +L K  +L    L   S
Sbjct: 216 SLPSYGLE---NLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 9e-09
 Identities = 42/285 (14%), Positives = 79/285 (27%), Gaps = 59/285 (20%)

Query: 45  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN-N 103
           +  EL      LR       +    L  +++S N +   I +    +L  + E+ +   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 104 HFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFP 163
           +    I+ E F N   L++    N  I          +P   ++  L             
Sbjct: 91  NLLY-INPEAFQNLPNLQYLLISNTGI--------KHLPDVHKIHSLQK----------- 130

Query: 164 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRL 223
             L                        +++N  +  +          F        +  +
Sbjct: 131 VLLD-----------------------IQDNINIHTIE------RNSFV---GLSFESVI 158

Query: 224 LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 283
           L ++ N  +  I     +      +  +  N L+      F       ILD+S   +   
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 284 IPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNR 328
           +P +       L   A S  NL+         L  L    L    
Sbjct: 217 LPSYGLENLKKLR--ARSTYNLK--KLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 18  SMPSLKYLSLSDSNSSRILDRG-LCSLVHLQELYIDN-NDLRGSLPWCLANMTSLRILDV 75
               L+ + +S ++   +++     +L  L E+ I+  N+L    P    N+ +L+ L +
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHS-RLKFFYAENNQINAEI 134
           S+  +   +     +H      L + +N     I    F   S      +   N     I
Sbjct: 112 SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG----I 166

Query: 135 TQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN 194
            + H+      QL  L+LS             +       +D+S  +++   P++ LEN 
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL 225

Query: 195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTN 229
            KL   S  N                L    ++  
Sbjct: 226 KKLRARSTYNLKKLPTL----EKLVALMEASLTYP 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.8 bits (191), Expect = 2e-15
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 15/188 (7%)

Query: 262 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL 321
            +   +  +  +  +N+ +   + + +     N+  L L+ N L         NL NL  
Sbjct: 37  VTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNGNKLTD--IKPLTNLKNLGW 91

Query: 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI 381
           L L+ N+ + ++  SL     L+ L L +N +S  I   L +L  L+ + + NN +  + 
Sbjct: 92  LFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDIT 147

Query: 382 PVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 441
                +L  L  L + DN IS  +        ++ ++LSKN +             +L  
Sbjct: 148 V--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDV 201

Query: 442 LDLSYNRL 449
           L+L     
Sbjct: 202 LELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 3e-14
 Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 18/224 (8%)

Query: 191 LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250
            +   + I+ ++   S+     +  +    +  +  + ++ +    ++    +  L++  
Sbjct: 17  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 74

Query: 251 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF 310
           N +  +         N+K L  L L  N +  ++   L      L+SL+L +N +     
Sbjct: 75  NKLTDI-----KPLTNLKNLGWLFLDENKIK-DL-SSLK-DLKKLKSLSLEHNGIS--DI 124

Query: 311 SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI 370
           +   +L  L+ L L  N+ + +I   LS+ + L+ L L +N +S  +P  L  LT LQ +
Sbjct: 125 NGLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180

Query: 371 IMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSI 414
            +  NH+  L  +    L +L +L++               L +
Sbjct: 181 YLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVV 222

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.7 bits (175), Expect = 2e-13
 Identities = 46/282 (16%), Positives = 107/282 (37%), Gaps = 26/282 (9%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           ++       +L   + +  +      L  + ++  +N+D++ S+   +  + ++  L ++
Sbjct: 18  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLN 73

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
            N+LT      PL +L ++  L L  N  +I   L    +  +LK    E+N I+ +I  
Sbjct: 74  GNKLT---DIKPLTNLKNLGWLFLDEN--KI-KDLSSLKDLKKLKSLSLEHNGIS-DI-- 124

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
             + +    QL  L L +   + +T    L     L+ + L   +++   P   L   TK
Sbjct: 125 --NGLVHLPQLESLYLGN---NKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTK 176

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD--VLPSLYVFNNSMN 254
           L  L +  + ++      +   K L +L++ +            +  V  ++   + S+ 
Sbjct: 177 LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 255 ALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 295
             +  S    +        L    N ++    + + +G    
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.7 bits (175), Expect = 2e-13
 Identities = 52/354 (14%), Positives = 106/354 (29%), Gaps = 77/354 (21%)

Query: 46  LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
           + E    +  ++   P            ++    +T    +     L SI++++ +N+  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 55

Query: 106 QIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKF 165
           +   S++       +   +   N++        + I P   L  L               
Sbjct: 56  K---SVQGIQYLPNVTKLFLNGNKL--------TDIKPLTNLKNL--------------- 89

Query: 166 LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLD 225
                                  WL  +  K+  LS             +   K+L+ L 
Sbjct: 90  ----------------------GWLFLDENKIKDLS------------SLKDLKKLKSLS 115

Query: 226 ISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP 285
           +  N       +     L SLY+ NN +  +     +    +  L  L L +N ++ +I 
Sbjct: 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 286 EHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEG 345
                G   L++L LS N++          L NL +L+L     + +     S       
Sbjct: 170 PL--AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 346 LHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
           +   + SL    P  + +    +   +  +  E    V F     + I      
Sbjct: 226 VKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 1e-11
 Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 214 PIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 273
            I     +  L ++ N      P+     L  L++  N +  L         ++K L+ L
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-----LKDLKKLKSL 114

Query: 274 DLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEI 333
            L +N ++ +I   L      LESL L NN +     +    L  L  L LE N+ + +I
Sbjct: 115 SLEHNGIS-DI-NGLV-HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ-ISDI 168

Query: 334 PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393
              L+  + L+ L+L+ N +S      L  L  L  + + +             L     
Sbjct: 169 V-PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 394 LDISDNNI 401
           +  +D ++
Sbjct: 226 VKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 13/109 (11%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 343 LEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
           +      +  +    P             +    +   +     +L+S+  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 403 GSLPACFHPLSIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYNRLN 450
            S+    +  ++ ++ L+ N    +L       N  +L  L L  N++ 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK 100

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 7e-14
 Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 20/231 (8%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
                +    +N    +     D + +L  F   +  ++G        +  L  L+L +N
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDN 73

Query: 279 HLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS 338
            +T ++          +  L LS N L+    S    L ++K L L   +     P  L+
Sbjct: 74  QIT-DLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD 398
             S+L+ L+L+ N ++   P  L  LT LQY+ + N  +  L P+    L  L  L   D
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADD 182

Query: 399 NNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           N IS  +       ++ +VHL  N +          N S+L  + L+   +
Sbjct: 183 NKIS-DISPLASLPNLIEVHLKNNQI---SDVSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 57/318 (17%), Positives = 110/318 (34%), Gaps = 51/318 (16%)

Query: 5   IALNTSFLQIIG-ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWC 63
           I   T+   I    ++ +   ++   SN +  +      L  +  L      +  ++   
Sbjct: 3   ITQPTAINVIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-G 58

Query: 64  LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFF 123
           +  + +L  L++  NQ+T     +PL +LT I EL LS N  +   ++        +K  
Sbjct: 59  VQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTL 112

Query: 124 YAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMN 183
              + QI  ++T    L      L  L L     + +T    L    +L+Y+ +      
Sbjct: 113 DLTSTQIT-DVTPLAGLS----NLQVLYLDL---NQITNISPLAGLTNLQYLSIG----- 159

Query: 184 GEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVL 243
                     N ++  L+            P+ +  +L  L    N      P+     L
Sbjct: 160 ----------NAQVSDLT------------PLANLSKLTTLKADDNKISDISPLASLPNL 197

Query: 244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNN 303
             +++ NN ++ +     S   N   L I+ L+N  +T +   +     V       S  
Sbjct: 198 IEVHLKNNQISDV-----SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

Query: 304 NLEGHMFSRNFNLANLKL 321
            +     S N   A+  L
Sbjct: 253 PIAPATISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 26/265 (9%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
             +  +  LS   +  + I   G+  L +L  L + +N +    P  L N+T +  L++S
Sbjct: 38  ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS 93

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
            N L    + S +  L SI+ L L++        + P    S L+  Y + NQI   I+ 
Sbjct: 94  GNPLK---NVSAIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQIT-NISP 146

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
              L      L  LS+ +     V+    L +   L  +     K++   P   L +   
Sbjct: 147 LAGLT----NLQYLSIGN---AQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPN 196

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNAL 256
           LI++ + N+ ++     P+ +   L ++ ++        PV   + L    V      A 
Sbjct: 197 LIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITN-QPVFYNNNLVVPNVVKGPSGAP 253

Query: 257 DGSIPSSFGNMKFLQILDLSNNHLT 281
               P++  +       +L+ N  +
Sbjct: 254 --IAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 29/185 (15%), Positives = 71/185 (38%), Gaps = 17/185 (9%)

Query: 266 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLE 325
            +     +    +++T  + +        + +L+     +          L NL  L+L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT--TIEGVQYLNNLIGLELK 71

Query: 326 GNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF 385
            N+ + ++   L   + +  L L+ N L       +  L  ++ + + +  +  + P   
Sbjct: 72  DNQ-ITDLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125

Query: 386 CQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDL 444
             L +LQ+L +  N I+ ++       +++ + +       Q+   T   N S L TL  
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNA----QVSDLTPLANLSKLTTLKA 180

Query: 445 SYNRL 449
             N++
Sbjct: 181 DDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 46/316 (14%), Positives = 104/316 (32%), Gaps = 52/316 (16%)

Query: 87  SPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQ 146
            P   L +  ++    ++           +   +    A    +                
Sbjct: 13  FPDPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVT--------------- 54

Query: 147 LSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDS 206
               ++             + + ++L  ++L   ++    P   L+N TK+ +L +  + 
Sbjct: 55  ----TIE-----------GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP 96

Query: 207 LAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGN 266
           L       I   + ++ LD+++       P+     L  LY+  N +  +     S    
Sbjct: 97  LKNVS--AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAG 149

Query: 267 MKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEG 326
           +  LQ L + N  ++   P         L +L   +N +     S   +L NL  + L+ 
Sbjct: 150 LTNLQYLSIGNAQVSDLTPLA---NLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKN 204

Query: 327 NRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFC 386
           N+     P  L+  S+L  + L N +++ +   +  NL     +         + P    
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK--GPSGAPIAPATIS 260

Query: 387 QLDSLQILDISDNNIS 402
              +    +++ N  S
Sbjct: 261 DNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 337 LSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396
               ++   +    ++++  +     +L  +  +      +  +  V+   L++L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLEL 70

Query: 397 SDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
            DN I+  L    +   I ++ LS N L             S+ TLDL+  ++ 
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT 120

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 7e-14
 Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 12/188 (6%)

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329
              ++    +LT  +P  L     +   L LS N L     +       L  L L+    
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD 389
           + ++         L  L L++N L   +P     L  L  + +  N L  L       L 
Sbjct: 67  LTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 390 SLQILDISDNNISGSLPA-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447
            LQ L +  N +  +LP     P   ++++ L+ N L  +L  G      +L TL L  N
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

Query: 448 RLNGSIPD 455
            L  +IP 
Sbjct: 183 SLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 21/195 (10%)

Query: 235 IPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 294
           +P ++      L++  N +        ++      L  L+L    LT ++   +      
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFS---LATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPV 78

Query: 295 LESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLS-----KCSSLEGLHL 348
           L +L LS+N L           L  L +L +  NR       SL          L+ L+L
Sbjct: 79  LGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYL 131

Query: 349 NNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA- 407
             N L    P  L     L+ + + NN+L  L       L++L  L + +N++  ++P  
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 408 CFHPLSIKQVHLSKN 422
            F    +    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 3   TRIALNTSFLQIIG--ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL 60
           T++ L+ + L  +    ++P L  L LS  N  + L     +L  L  L +  N L  SL
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLT-SL 115

Query: 61  P-WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHS 118
           P   L  +  L+ L +  N+L  ++    L     +E+L L+NN+   +P  L       
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLE 172

Query: 119 RLKFFYAENNQI 130
            L     + N +
Sbjct: 173 NLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 12  LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLP-WCLANMTSL 70
           L ++G+++P+L  L +S +  + +    L  L  LQELY+  N+L+ +LP   L     L
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150

Query: 71  RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENN 128
             L +++N LT  + +  L  L +++ L+L  N    IP   + FF    L F +   N
Sbjct: 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 27/136 (19%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG--------------------- 58
                L LS++         L     L +L +D  +L                       
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 59  SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP--FFN 116
           SLP     + +L +LDVS N+LT S+    L  L  ++EL L  N  +   +L P     
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK---TLPPGLLTP 146

Query: 117 HSRLKFFYAENNQINA 132
             +L+     NN +  
Sbjct: 147 TPKLEKLSLANNNLTE 162

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 46/238 (19%), Positives = 69/238 (28%), Gaps = 66/238 (27%)

Query: 44  VHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 103
                L++  N L       L   T L  L++   +LT          L  +  L LS+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 104 HFQIPISLEPFFNH-SRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF 162
             Q   SL         L       N++                    SL  G   G+  
Sbjct: 88  QLQ---SLPLLGQTLPALTVLDVSFNRLT-------------------SLPLGALRGLGE 125

Query: 163 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSL-AGPF-RLPIHSHKQ 220
            + LY                       L+ N    +L     +L  G     P     +
Sbjct: 126 LQELY-----------------------LKGN----ELK----TLPPGLLTPTP-----K 149

Query: 221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
           L  L ++ NN    +P  + + L +L       N+L  +IP  F     L    L  N
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 3e-13
 Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 14/166 (8%)

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFNLANLKLLQLEG 326
             +LDLS+N+L+    E       NL SL LS+N+L       F     + NL+ L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 327 NRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPR-WLGNLTWLQYIIMPNNHLEGLIP--- 382
           N          S   +LE L L NN +   + R    ++  LQ + +  N +        
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 383 VEFCQLDSLQILDISDNNISGSLPACFHPLS---IKQVHLSKNMLH 425
            +  +L  L +LD+S N +          L       ++L  N L 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRW-LGNLTWLQYIIMPNNHLEGLIPVEFCQLDS 390
            +PQSL   S    L L++N+LS     W    LT L  +++ +NHL  +    F  + +
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 391 LQILDISDNNISGSLPA-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 448
           L+ LD+S N++  +L    F  L +++ + L  N +   + R  F + + L  L LS N+
Sbjct: 90  LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147

Query: 449 LNGSIPD 455
           ++   P 
Sbjct: 148 IS-RFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 24/155 (15%), Positives = 65/155 (41%), Gaps = 11/155 (7%)

Query: 3   TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW 62
           +R+    +        + +L  L LS ++ + I       + +L+ L + +N L  +L  
Sbjct: 52  SRLRAEWTP-----TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDE 105

Query: 63  -CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPI-SLEPFFNHSR 119
              +++ +L +L + +N +   +  +    +  +++L LS N     P+  ++      +
Sbjct: 106 FLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164

Query: 120 LKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSS 154
           L      +N++  ++  +     P +  + L L +
Sbjct: 165 LMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 41/193 (21%)

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL----EGHMFSRNFNLANLKLLQLEG 326
            IL  S   L   +P+ L         L LS+NNL         +    L NL  L L  
Sbjct: 21  NILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSH 73

Query: 327 NRFVGEIP-QSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF 385
           N  +  I  ++     +L  L L++N L         +L  L+ +++ NNH+  +    F
Sbjct: 74  NH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132

Query: 386 CQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCS---SLVTL 442
             +  LQ L +S N IS   P                            + +    L+ L
Sbjct: 133 EDMAQLQKLYLSQNQIS-RFPV-----------------------ELIKDGNKLPKLMLL 168

Query: 443 DLSYNRLNGSIPD 455
           DLS N+L   +P 
Sbjct: 169 DLSSNKLK-KLPL 180

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW----CLANMTSLRI 72
             + +L+ L L +++   +       +  LQ+LY+  N +    P         +  L +
Sbjct: 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLML 167

Query: 73  LDVSSNQLTGSISSSPLVHLTSI--EELMLSNNHFQIPISLEPFFNH 117
           LD+SSN+L   +  + L  L +     L L NN  +    L   F+H
Sbjct: 168 LDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSH 213

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 263 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322
           +   M  L  + L+N ++T ++   +     N++ L ++N +     ++    L+NL+ L
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINNIHATN--YNPISGLSNLERL 93

Query: 323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIP 382
           ++ G     +   +LS  +SL  L +++++    I   +  L  +  I +  N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 383 VEFCQLDSLQILDISDNNIS 402
                L  L+ L+I  + + 
Sbjct: 154 -PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 6e-13
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
             + +L+ L +   + +      L  L  L  L I ++    S+   +  +  +  +D+S
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAE 133
            N     I   PL  L  ++ L +  +            +  +L   YA +  I  +
Sbjct: 145 YNGAITDI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           E   ++K L++++ +++      +  L +L+ L I   D+       L+ +TSL +LD+S
Sbjct: 63  EYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN 131
            +        + +  L  +  + LS N   I   + P      LK    + + ++
Sbjct: 121 HSAHD-DSILTKINTLPKVNSIDLSYNG-AIT-DIMPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 10/147 (6%)

Query: 8   NTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANM 67
            +S   I    M SL Y++L++ N + +   G+    ++++L I+N       P  ++ +
Sbjct: 32  QSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--ISGL 87

Query: 68  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAEN 127
           ++L  L +    +T S     L  LTS+  L +S++       L       ++       
Sbjct: 88  SNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSY 145

Query: 128 NQINAEITQSHSLIPPKFQLSRLSLSS 154
           N    +I    +L     +L  L++  
Sbjct: 146 NGAITDIMPLKTLP----ELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 7/137 (5%)

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
             ++ L I+  +   + P+     L +L         +      +   +  L +LD+S++
Sbjct: 66  HNIKDLTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 279 HLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS 338
                I   +      + S+ LS N     +      L  LK L ++ +         + 
Sbjct: 123 AHDDSILTKIN-TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IE 178

Query: 339 KCSSLEGLHLNNNSLSG 355
               L  L+  + ++ G
Sbjct: 179 DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 23/186 (12%), Positives = 65/186 (34%), Gaps = 16/186 (8%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            + K         S   +     +  L  + + N ++       +    +++ L +++  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHS 139
            T   + +P+  L+++E L +          +      + L      ++  +       S
Sbjct: 78  AT---NYNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHD------DS 127

Query: 140 LIPPKFQLSRL-SLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLI 198
           ++     L ++ S+   Y   +T    L    +L+ +++    ++       +E+  KL 
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLN 184

Query: 199 QLSVVN 204
           QL   +
Sbjct: 185 QLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 28/139 (20%)

Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
            + +L  + L     V ++   +    +++ L +NN   +   P  +  L+ L+ + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFF 434
             +          L SL +LDIS +    S+    +                        
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN------------------------ 133

Query: 435 NCSSLVTLDLSYNRLNGSI 453
               + ++DLSYN     I
Sbjct: 134 TLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 27/242 (11%), Positives = 64/242 (26%), Gaps = 90/242 (37%)

Query: 65  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY 124
           A M SL  + +++  +T     + + +  +I++L ++N H     +  P    S L+   
Sbjct: 41  AQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 125 AENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNG 184
                                 ++   + +                              
Sbjct: 95  IMGK-----------------DVTSDKIPN------------------------------ 107

Query: 185 EFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLP 244
                 L   T L  L + + +        I++  ++  +D+S N         I D+  
Sbjct: 108 ------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-------AITDI-- 152

Query: 245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP-EHLAVGCVNLESLALSNN 303
                                 +  L+ L++  + +      E        L  L   + 
Sbjct: 153 -----------------MPLKTLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQ 191

Query: 304 NL 305
            +
Sbjct: 192 TI 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 33/201 (16%)

Query: 260 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNN---NLEGHMFSRNFNL 316
           IP+        + LDL +N L+  +P         L  L L++N    L   +F     L
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---L 84

Query: 317 ANLKLLQLEGNRFVGEIPQSL-----SKCSSLEGLHLNNN---SLSGRIPRWLGNLTWLQ 368
            NL+ L +  N+      Q+L      +  +L  L L+ N   SL  R+   L  LT+L 
Sbjct: 85  KNLETLWVTDNKL-----QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139

Query: 369 YIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA-CFHPLS-IKQVHLSKNMLHG 426
              +  N L+ L    F +L SL+ L + +N +   +P   F  L+ +K + L  N L  
Sbjct: 140 ---LGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK- 194

Query: 427 QLKRGTFFNCSSLVTLDLSYN 447
           ++  G F +   L  L L  N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 23/198 (11%)

Query: 235 IPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 294
           IP  I      L + +N +++L      +F  +  L++L L++N L   +P  +     N
Sbjct: 31  IPSNIPADTKKLDLQSNKLSSLP---SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 295 LESLALSNNNLE---GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS-----KCSSLEGL 346
           LE+L +++N L+     +F     L NL  L+L+ N+      +SL        + L  L
Sbjct: 87  LETLWVTDNKLQALPIGVFD---QLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYL 138

Query: 347 HLNNNSLSGRIPRWL-GNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL 405
            L  N L   +P+ +   LT L+ + + NN L+ +    F +L  L+ L + +N +    
Sbjct: 139 SLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

Query: 406 PACFHPL-SIKQVHLSKN 422
              F  L  +K + L +N
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 40/222 (18%)

Query: 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLT---GEIPEHLAVGCVNLESLALSNNN-- 304
           N ++   DG + S   N      +D S+  LT     IP        + + L L +N   
Sbjct: 1   NEALCKKDGGVCSCNNNKN---SVDCSSKKLTAIPSNIP-------ADTKKLDLQSNKLS 50

Query: 305 -LEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS-----KCSSLEGLHLNNN---SLSG 355
            L    F R   L  L+LL L  N+      Q+L      +  +LE L + +N   +L  
Sbjct: 51  SLPSKAFHR---LTKLRLLYLNDNKL-----QTLPAGIFKELKNLETLWVTDNKLQALPI 102

Query: 356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA-CFHPL-S 413
            +   L NL  L+   +  N L+ L P  F  L  L  L +  N +  SLP   F  L S
Sbjct: 103 GVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS 158

Query: 414 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           +K++ L  N L  ++  G F   + L TL L  N+L   +P+
Sbjct: 159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 21  SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQ 79
             K L L  +  S +  +    L  L+ LY+++N L+ +LP      + +L  L V+ N+
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP--FFNHSRLKFFYAENNQI 130
           L  ++       L ++ EL L  N  +   SL P  F + ++L +     N++
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYNEL 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           S+  L YLSL   N  + L +G+   L  L+EL + NN L+         +T L+ L + 
Sbjct: 131 SLTKLTYLSLG-YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNN 103
           +NQL   +       L  ++ L L  N
Sbjct: 190 NNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 44/238 (18%), Positives = 79/238 (33%), Gaps = 62/238 (26%)

Query: 44  VHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 103
              ++L + +N L          +T LR+L ++ N+L  ++ +     L ++E L +++N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 104 HFQIPISLEP--FFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT 161
             Q   +L    F     L     + NQ+                    SL     D +T
Sbjct: 96  KLQ---ALPIGVFDQLVNLAELRLDRNQLK-------------------SLPPRVFDSLT 133

Query: 162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPF-RLPIHSHKQ 220
              +L                        L  N    +L  +     G F +L       
Sbjct: 134 KLTYLS-----------------------LGYN----ELQSLP---KGVFDKLT-----S 158

Query: 221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
           L+ L +  N  +  +P    D L  L       N L      +F +++ L++L L  N
Sbjct: 159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 74/398 (18%), Positives = 135/398 (33%), Gaps = 51/398 (12%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSN----SSRILDRGLCSLVHLQELYIDNNDLRGSLPW 62
           L+ +    +   +   + + L D        + +   L     L EL + +N+L      
Sbjct: 15  LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 74

Query: 63  CLANM-----TSLRILDVSSNQLT----GSISSSPLVHLTSIEELMLSNNHFQIP----I 109
           C+          ++ L + +  LT    G +SS+ L  L +++EL LS+N         +
Sbjct: 75  CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQLL 133

Query: 110 SLEPFFNHSRLKFFYAENNQINAEITQS-HSLIPPKFQLSRLSLSS---GYEDGVTFPKF 165
                    RL+    E   ++A   +   S++  K     L++S+            + 
Sbjct: 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 193

Query: 166 LYHQHD-LEYVDLSHIKMNGEFPTWL---LENNTKLIQLSVVNDSL--AGPFRL---PIH 216
           L      LE + L    +  +    L   + +   L +L++ ++ L   G   L    +H
Sbjct: 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253

Query: 217 SHKQLRLLDISTNNFRGHIPVEIGDVL---PSLYVFNNSMNALDGSIPSSFGNM-----K 268
              +LR L I           ++  VL    SL   + + N L                 
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 269 FLQILDLSNNHLTGEIPEHLAVG---CVNLESLALSNNNLEG---HMFSR--NFNLANLK 320
            L+ L + +   T     H +        L  L +SNN LE        +      + L+
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 321 LLQLEGNRF----VGEIPQSLSKCSSLEGLHLNNNSLS 354
           +L L            +  +L    SL  L L+NN L 
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 74/440 (16%), Positives = 144/440 (32%), Gaps = 61/440 (13%)

Query: 21  SLKYLSLSDSNSSRILDRGLCSLV-HLQELYIDNNDLR----GSLPWCLANMTSLRILDV 75
            ++ L +     S      L  L+   Q + +D+  L       +   L    +L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 76  SSNQLTGS----ISSSPLVHLTSIEELMLSNNHFQ---IPISLEPFFNHSRLKFFYAENN 128
            SN+L       +          I++L L N         +          L+  +  +N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 129 QINAEITQ--SHSLIPPKFQLSRLSLSS---GYEDGVTFPKFLYHQHDLEYVDLSHIKMN 183
            +     Q     L+ P+ +L +L L                L  + D + + +S+  +N
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 184 GE----FPTWLLENNTKLIQLSVVNDSL----AGPFRLPIHSHKQLRLLDISTNNFRGHI 235
                     L ++  +L  L + +  +           + S   LR L + +N      
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 236 PVEIGDV-------LPSLYVFNNSMNALDGS-IPSSFGNMKFLQILDLSNNHLTGE---- 283
             E+          L +L+++   + A     +       + L+ L L+ N L  E    
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 284 IPEHLAVGCVNLESLALSNNNLE-------GHMFSRNFNLANLKLLQLEGNRFVGEIPQS 336
           + E L      LESL + + +           + ++N     L  LQ+  NR      + 
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN---RFLLELQISNNRLEDAGVRE 360

Query: 337 LSK-----CSSLEGLHLNNNSLS----GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQ 387
           L +      S L  L L +  +S      +   L     L+ + + NN L     ++  +
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420

Query: 388 L-----DSLQILDISDNNIS 402
                   L+ L + D   S
Sbjct: 421 SVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 65/423 (15%), Positives = 126/423 (29%), Gaps = 84/423 (19%)

Query: 68  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFF----NHSRLKFF 123
             ++ LD+   +L+ +  +  L  L   + + L +         +        +  L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 124 YAENNQINAEITQ--SHSLIPPKFQLSRLSLSS---GYEDGVTFPKFLYHQHDLEYVDLS 178
              +N++           L  P  ++ +LSL +              L     L+ + LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 179 HIKMNGE----FPTWLLENNTKLIQLSVVNDSL----AGPFRLPIHSHKQLRLLDISTNN 230
              +           LL+   +L +L +   SL      P    + +    + L +S N+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 231 FRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV 290
                   I +           +  L   +     +   L+ L L +  +T +    L  
Sbjct: 182 --------INEA---------GVRVLCQGLKD---SPCQLEALKLESCGVTSDNCRDLCG 221

Query: 291 G---CVNLESLALSNNNLEG---HMFSRNFNLANLKL--LQLEGNRF----VGEIPQSLS 338
                 +L  LAL +N L               + +L  L +          G++ + L 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD 398
              SL+ L L  N L                    +     L          L+ L +  
Sbjct: 282 AKESLKELSLAGNELG-------------------DEGARLLCETLLEPGCQLESLWVKS 322

Query: 399 NNISGSLPACFHPLS--------IKQVHLSKNMLHG----QLKRGTFFNCSSLVTLDLSY 446
            + +    AC    S        + ++ +S N L      +L +G     S L  L L+ 
Sbjct: 323 CSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 447 NRL 449
             +
Sbjct: 380 CDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 54/323 (16%), Positives = 105/323 (32%), Gaps = 64/323 (19%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSL--------VHLQELYIDNNDLR----GSLPWCL 64
            + P  K L++S+++   I + G+  L          L+ L +++  +       L   +
Sbjct: 167 RAKPDFKELTVSNND---INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 65  ANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNHFQIPISLEPFF----N 116
           A+  SLR L + SN+L       +    L   + +  L +                    
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCRVLRA 282

Query: 117 HSRLKFFYAENNQINAEITQ--SHSLIPPKFQLSRLSLSS---GYEDGVTFPKFLYHQHD 171
              LK      N++  E  +    +L+ P  QL  L + S          F   L     
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 172 LEYVDLSHIKMNGE----FPTWLLENNTKLIQLSVVNDSL----AGPFRLPIHSHKQLRL 223
           L  + +S+ ++           L +  + L  L + +  +           + ++  LR 
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 224 LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 283
           LD+S N         +GD           +  L  S+         L+ L L + + + E
Sbjct: 403 LDLSNNC--------LGDA---------GILQLVESVRQ---PGCLLEQLVLYDIYWSEE 442

Query: 284 IPEHLAVGCVNLESLALSNNNLE 306
                      L++L     +L 
Sbjct: 443 -------MEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 38/201 (18%)

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329
           +Q LD+    L+      L       + + L +  L                        
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--------------------TEAR 44

Query: 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNL-----TWLQYIIMPNNHL--EGL-- 380
             +I  +L    +L  L+L +N L       +          +Q + + N  L   G   
Sbjct: 45  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 381 IPVEFCQLDSLQILDISDNNISGS-----LPACFHPLS-IKQVHLSKNMLHGQLKRG--- 431
           +      L +LQ L +SDN +  +           P   ++++ L    L          
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 432 TFFNCSSLVTLDLSYNRLNGS 452
                     L +S N +N +
Sbjct: 165 VLRAKPDFKELTVSNNDINEA 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 15/188 (7%)

Query: 262 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL 321
            +   +  +  +  +N+ +   + + +     N+  L L+ N L         NL NL  
Sbjct: 40  VTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNGNKLT--DIKPLANLKNLGW 94

Query: 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI 381
           L L+ N+ V ++  SL     L+ L L +N +S      L +L  L+ + + NN +  + 
Sbjct: 95  LFLDENK-VKDL-SSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDIT 150

Query: 382 PVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 441
            +   +L  L  L + DN IS  +        ++ ++LSKN +             +L  
Sbjct: 151 VLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDV 204

Query: 442 LDLSYNRL 449
           L+L     
Sbjct: 205 LELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 41/224 (18%), Positives = 89/224 (39%), Gaps = 18/224 (8%)

Query: 191 LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250
            +   + I+ ++   S+     +  +    +  +  + ++ +    ++    +  L++  
Sbjct: 20  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 77

Query: 251 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF 310
           N +  +         N+K L  L L  N +  ++   L      L+SL+L +N +     
Sbjct: 78  NKLTDI-----KPLANLKNLGWLFLDENKVK-DL-SSLK-DLKKLKSLSLEHNGIS--DI 127

Query: 311 SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI 370
           +   +L  L+ L L  N+        LS+ + L+ L L +N +S  +P  L  LT LQ +
Sbjct: 128 NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 371 IMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSI 414
            +  NH+  L  +    L +L +L++               L +
Sbjct: 184 YLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVV 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           + +  LK LSL  +  S I   GL  L  L+ LY+ NN +       L+ +T L  L + 
Sbjct: 109 KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLE 164

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
            NQ++      PL  LT ++ L LS NH      L        L      + + 
Sbjct: 165 DNQIS---DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 18/163 (11%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
             + S+  +  ++S+   +  +G+  L ++ +L+++ N L    P  LAN+ +L  L + 
Sbjct: 43  NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
            N++      S L  L  ++ L L +N       +    +  +L+  Y  NN+I  +IT 
Sbjct: 99  ENKVK---DLSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKIT-DITV 151

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSH 179
              L     +L  LSL     + ++    L     L+ + LS 
Sbjct: 152 LSRLT----KLDTLSLED---NQISDIVPLAGLTKLQNLYLSK 187

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 46/316 (14%), Positives = 102/316 (32%), Gaps = 75/316 (23%)

Query: 39  GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
              +     +  +    +  ++      + S+  +  +++ +    S   + +L ++ +L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 73

Query: 99  MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED 158
            L+ N       ++P  N   L + + + N++  +++    L     +L  LSL     +
Sbjct: 74  FLNGNKLT---DIKPLANLKNLGWLFLDENKVK-DLSSLKDLK----KLKSLSLEH---N 122

Query: 159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSH 218
           G++    L H   LE + L                N K+  ++             +   
Sbjct: 123 GISDINGLVHLPQLESLYLG---------------NNKITDIT------------VLSRL 155

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
            +L  L +  N         I D+                        +  LQ L LS N
Sbjct: 156 TKLDTLSLEDNQ--------ISDI-------------------VPLAGLTKLQNLYLSKN 188

Query: 279 HLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS 338
           H++ ++      G  NL+ L L +        +   NL     ++      V   P+ +S
Sbjct: 189 HIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIIS 243

Query: 339 KCSSLEGLHLNNNSLS 354
                E  ++  +   
Sbjct: 244 DDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 46/246 (18%), Positives = 98/246 (39%), Gaps = 28/246 (11%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           ++       +L   + +  +      L  + ++  +N+D++ S+   +  + ++  L ++
Sbjct: 21  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLN 76

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
            N+LT      PL +L ++  L L  N  +    L    +  +LK    E+N I+ +I  
Sbjct: 77  GNKLT---DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS-DING 129

Query: 137 SHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196
              L     QL  L L +   + +T    L     L+ + L   +++   P   L   TK
Sbjct: 130 LVHLP----QLESLYLGN---NKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTK 179

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNAL 256
           L  L +  + ++      +   K L +L++ +        +       S  V  N++   
Sbjct: 180 LQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC-----LNKPINHQSNLVVPNTVKNT 232

Query: 257 DGSIPS 262
           DGS+ +
Sbjct: 233 DGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 31/184 (16%), Positives = 69/184 (37%), Gaps = 37/184 (20%)

Query: 266 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLE 325
                   +L    +T  + ++      +++ +  +N++++         L N+  L L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLN 76

Query: 326 GNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF 385
           GN+ + +I   L+   +L  L L+ N +   +   L +L  L+ + + +N +  +  +  
Sbjct: 77  GNK-LTDIK-PLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDINGLV- 131

Query: 386 CQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 445
             L  L+ L + +N I+         LS                       + L TL L 
Sbjct: 132 -HLPQLESLYLGNNKIT-----DITVLS---------------------RLTKLDTLSLE 164

Query: 446 YNRL 449
            N++
Sbjct: 165 DNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 35/212 (16%), Positives = 81/212 (38%), Gaps = 16/212 (7%)

Query: 191 LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250
           ++    + +L +  + L      P+ + K L  L +  N  +    ++    L SL + +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121

Query: 251 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF 310
           N ++ ++G       ++  L+ L L NN +T      L+     L++L+L +N +     
Sbjct: 122 NGISDING-----LVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQIS--DI 171

Query: 311 SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI 370
                L  L+ L L  N  + ++ ++L+   +L+ L L +     +      NL     +
Sbjct: 172 VPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 371 IMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
              +  L     +        +  ++  +   
Sbjct: 230 KNTDGSLVTPEIISD--DGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 15/114 (13%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 337 LSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396
               +     +L   S++  +      L  +  II  N+ ++ +  ++   L ++  L +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 397 SDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
           + N ++  +    +  ++  + L +N +       +  +   L +L L +N ++
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS 125

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 8e-12
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 13  QIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRI 72
            ++      ++ L L+  + + +    L  L+ +  L + +N LR +LP  LA +  L +
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490

Query: 73  LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
           L  S N L    +   + +L  ++EL+L NN  Q   +++P  +  RL     + N +
Sbjct: 491 LQASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.9 bits (152), Expect = 9e-11
 Identities = 47/315 (14%), Positives = 105/315 (33%), Gaps = 43/315 (13%)

Query: 92  LTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLS 151
           + ++  ++          + +     S +         +N ++ Q    +      S+  
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 152 LSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPF 211
                +    + +       L   +LS  K         LE+  +L +L   N       
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTI 388

Query: 212 RLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 271
            L + +   L     +   F     ++  D + + Y+ +     L  +          ++
Sbjct: 389 ILLMRALDPLLYEKETLQYFST---LKAVDPMRAAYLDDLRSKFLLENSVLKM-EYADVR 444

Query: 272 ILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG 331
           +L L++  LT  +  HL    + +  L LS+N L                          
Sbjct: 445 VLHLAHKDLT--VLCHLE-QLLLVTHLDLSHNRLR------------------------- 476

Query: 332 EIPQSLSKCSSLEGLHLNNN---SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVE-FCQ 387
            +P +L+    LE L  ++N   ++ G     + NL  LQ +++ NN L+    ++    
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 388 LDSLQILDISDNNIS 402
              L +L++  N++ 
Sbjct: 532 CPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 9/230 (3%)

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
                +      R             L+    S+      + S   + K LQ L+  N  
Sbjct: 325 SDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKW 383

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
               I   +      L+ L      L+     +  +      L    ++F+ E      +
Sbjct: 384 CLLTIILLMR----ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 439

Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
            + +  LHL +  L+  +   L  L  + ++ + +N L   +P     L  L++L  SDN
Sbjct: 440 YADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDN 496

Query: 400 NISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
            +  ++    +   ++++ L  N L          +C  LV L+L  N L
Sbjct: 497 ALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 5e-09
 Identities = 52/314 (16%), Positives = 89/314 (28%), Gaps = 17/314 (5%)

Query: 45  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 104
               +  +   L       L   + +  L +  ++   S+             + L +  
Sbjct: 246 CCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLP 305

Query: 105 FQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRL-SLSSGYEDGVTFP 163
                   P      +        +      +            +L       E      
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ 365

Query: 164 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRL 223
             L    +L+ ++  +          ++     L  L    ++L     L      +   
Sbjct: 366 SELESCKELQELEPENKWCL----LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 224 LDISTNNFRGHIPVEIGDVLPS--LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 281
           LD   + F     V   +      L++ +  +  L          +  +  LDLS+N L 
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLR 476

Query: 282 GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG-EIPQSLSKC 340
             +P  LA     LE L  S+N LE        NL  L+ L L  NR       Q L  C
Sbjct: 477 -ALPPALA-ALRCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 341 SSLEGLHLNNNSLS 354
             L  L+L  NSL 
Sbjct: 533 PRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           E +  + +L LS  N  R L   L +L  L+ L   +N L  ++   +AN+  L+ L + 
Sbjct: 460 EQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLC 516

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
           +N+L  S +  PLV    +  L L  N   
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRW-LGNLTWLQYIIMPNNHLEGLIPVEFCQLDS 390
           +    L    +L  L++ N      +    L  L  L+ + +  + L  + P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 391 LQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH 425
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 8e-09
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 38  RGLCSLVHLQELYIDNNDLRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 96
             L    +L ELYI+N      L    L  +  LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 97  ELMLSNNHFQIPISLEP-FFNHSRLKFFYAENNQIN 131
            L LS N  +   SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 18  SMPSLKYLSLSDSNSSRILDRG-LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
              +L  L + +    + L+   L  L  L+ L I  + LR   P        L  L++S
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
            N L  S+S   +  L S++EL+LS N   
Sbjct: 89  FNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 6e-08
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 7/98 (7%)

Query: 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL---EGHMFSRNFN 315
                    + L  L + N      +      G   L +L +  + L       F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSL 353
              L  L L  N     +     +  SL+ L L+ N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 26/111 (23%)

Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP-NNHLEGLIPVEFCQLDSLQILDISD 398
                GL    +         L     L  + +    HL+ L   +   L  L+ L I  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 399 NNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
           + +                          +    F     L  L+LS+N L
Sbjct: 66  SGLR------------------------FVAPDAFHFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 12/117 (10%)

Query: 41  CSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 100
           C       L    +    SL   L    +L  L + + Q    +    L  L  +  L +
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 101 SNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQ---LSRLSLSS 154
             +  +  ++ + F    RL       N +        SL     Q   L  L LS 
Sbjct: 64  VKSGLRF-VAPDAFHFTPRLSRLNLSFNAL-------ESLSWKTVQGLSLQELVLSG 112

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 47/279 (16%), Positives = 84/279 (30%), Gaps = 67/279 (24%)

Query: 217 SHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS 276
           S K L + + S + F G +  EI + L  L                +      L  + LS
Sbjct: 58  SKKDLEIAEFS-DIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLS 102

Query: 277 NNHLTGEIPEHLAVG---CVNLESLALSNNNL-------------EGHMFSRNFNLANLK 320
           +N       E L         LE L L NN L             E  +  +  N   L+
Sbjct: 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162

Query: 321 LLQLEGNRF----VGEIPQSLSKCSSLEGLHLNNNSL-----SGRIPRWLGNLTWLQYII 371
            +    NR     + E  ++      L  + +  N +        +   L     L+ + 
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222

Query: 372 MPNNHL---------EGLIPVEFCQLDSLQILDISDNNI--------SGSLPACFHPLSI 414
           + +N             L         +L+ L ++D  +          +     +   +
Sbjct: 223 LQDNTFTHLGSSALAIAL-----KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GL 276

Query: 415 KQVHLSKNMLHGQ----LKRGTFFNCSSLVTLDLSYNRL 449
           + + L  N +       LK         L+ L+L+ NR 
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 49/226 (21%)

Query: 270 LQILDLSNNHLTGEIPEHLA---VGCVNLESLALSNNNLE-------GHMFSRNFNLANL 319
           ++   L  + +T E  + +    +   +++ + LS N +            +   +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 320 KLLQLEGNRFVGEIP-------QSLSKCSSLEGLHLNNNSLSGR----IPRWLGNLTWLQ 368
           +   +   R   EIP       Q+L KC  L  + L++N+        +  +L   T L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 369 YIIMPNNHL-------------EGLIPVEFCQLDSLQILDISDNNI--------SGSLPA 407
           ++ + NN L             E  +  +      L+ +    N +        + +  +
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 408 CFHPLSIKQVHLSKNMLH----GQLKRGTFFNCSSLVTLDLSYNRL 449
                 +  V + +N +       L       C  L  LDL  N  
Sbjct: 186 H---RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 58/320 (18%), Positives = 101/320 (31%), Gaps = 60/320 (18%)

Query: 127 NNQINAEITQSH-SLIPPKFQLSRLSLSS---GYEDGVTFPKFLYHQHDLEYVDLSHIKM 182
            + I  E  +S  +++     +  + LS    G E      + +  + DLE  + S I  
Sbjct: 13  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 72

Query: 183 N---GEFPTWL------LENNTKLIQLSVVNDSL----AGPFRLPIHSHKQLRLLDISTN 229
                E P  L      L    KL  + + +++       P    +  H  L  L +  N
Sbjct: 73  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 230 NFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 289
                   +I   L  L V   +             N   L+ +    N L     +  A
Sbjct: 133 GLGPQAGAKIARALQELAVNKKA------------KNAPPLRSIICGRNRLENGSMKEWA 180

Query: 290 VG---CVNLESLALSNNNLE--------GHMFSRNFNLANLKLLQLEGNRF----VGEIP 334
                   L ++ +  N +             +       LK+L L+ N F       + 
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC---QELKVLDLQDNTFTHLGSSALA 237

Query: 335 QSLSKCSSLEGLHLNNNSLS-------GRIPRWLGNLTWLQYIIMPNNHL-----EGLIP 382
            +L    +L  L LN+  LS             L N+  LQ + +  N +       L  
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKT 296

Query: 383 VEFCQLDSLQILDISDNNIS 402
           V   ++  L  L+++ N  S
Sbjct: 297 VIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 47/233 (20%), Positives = 72/233 (30%), Gaps = 55/233 (23%)

Query: 266 NMKFLQILDLSNNHLTGE----IPEHLAVGCVNLESLALSNNNL-----EGHMFSRNF-- 314
               ++ + LS N +  E    + E++A    +LE    S+        E     R    
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 315 ---NLANLKLLQLEGNRF----VGEIPQSLSKCSSLEGLHLNNNSLS------------- 354
                  L  ++L  N F       +   LSK + LE L+L+NN L              
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 355 GRIPRWLGNLTWLQYIIMPNNHLEG----LIPVEFCQLDSLQILDISDNNIS--GSLPAC 408
             + +   N   L+ II   N LE          F     L  + +  N I   G     
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 409 FHPL----SIKQVHLSKNMLHGQ--------LKRGTFFNCSSLVTLDLSYNRL 449
              L     +K + L  N             LK     +  +L  L L+   L
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-----SWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 53/335 (15%), Positives = 106/335 (31%), Gaps = 63/335 (18%)

Query: 64  LANMTSLRILDVSSNQLTG---SISSSPLVHLTSIEELMLSNNHF------QIPISLEPF 114
           +A   S+    +  + +T        + L+   S++E++LS N         +  ++   
Sbjct: 1   MAR-FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA-- 57

Query: 115 FNHSRLKFFYAENNQINAEITQ--------SHSLIPPKFQLSRLSLSS---GYEDGVTFP 163
            +   L+     +        +          +L+    +L  + LS    G        
Sbjct: 58  -SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLI 115

Query: 164 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRL 223
            FL     LE++ L +  +  +    +     +L       ++              LR 
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA------------PPLRS 163

Query: 224 LDISTNNFRGHIPVEIGDVLP------SLYVFNNSMNA--LDGSIPSSFGNMKFLQILDL 275
           +    N        E            ++ +  N +    ++  +       + L++LDL
Sbjct: 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 276 SNNHLTGE----IPEHLAVGCVNLESLALSNNNLE-------GHMFSRNFNLANLKLLQL 324
            +N  T      +   L     NL  L L++  L           FS+  N+  L+ L+L
Sbjct: 224 QDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRL 281

Query: 325 EGNRF----VGEIPQSL-SKCSSLEGLHLNNNSLS 354
           + N      V  +   +  K   L  L LN N  S
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 21/168 (12%)

Query: 6   ALNTSFLQIIGESMPSLKYLSLSD----SNSSRILDRGLCSLVHLQELYIDNNDLR---- 57
           AL    +    ++ P L+ +        + S +   +   S   L  + +  N +R    
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 58  -GSLPWCLANMTSLRILDVSSNQLT--GSIS-SSPLVHLTSIEELMLSNNHFQ------I 107
              L   LA    L++LD+  N  T  GS + +  L    ++ EL L++          +
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 108 PISLEPFFNHSRLKFFYAENNQINAEITQ--SHSLIPPKFQLSRLSLS 153
             +     N   L+    + N+I  +  +     +      L  L L+
Sbjct: 265 VDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 42/302 (13%), Positives = 78/302 (25%), Gaps = 79/302 (26%)

Query: 17  ESMPSLKYLSLSDSNSSRILD----------RGLCSLVHLQELYIDNNDL--RGSLPWC- 63
            S   L+    SD  + R+ D          + L     L  + + +N        P   
Sbjct: 57  ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 64  -LANMTSLRILDVSSNQ------------LTGSISSSPLVHLTSIEELMLSNNHFQ---- 106
            L+  T L  L + +N             L     +    +   +  ++   N  +    
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 107 IPISLEPFFNHSRLKFFYAENNQINAEITQS--HSLIPPKFQLSRLSLSS---GYEDGVT 161
              + + F +H  L       N I  E  +      +    +L  L L      +     
Sbjct: 177 KEWA-KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 162 FPKFLYHQHDLEYVDLSH--IKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHK 219
               L    +L  + L+   +   G               +                 + 
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARG------------AAAVVDA---------FSKLENI 274

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
            L+ L +  N        EI            ++  L   I      M  L  L+L+ N 
Sbjct: 275 GLQTLRLQYN--------EIELD---------AVRTLKTVIDE---KMPDLLFLELNGNR 314

Query: 280 LT 281
            +
Sbjct: 315 FS 316

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 17/189 (8%)

Query: 214 PIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 273
           P          ++   +    +  +    + +    N+++ +L G           L+ L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-----MQFFTNLKEL 68

Query: 274 DLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEI 333
            LS+N ++ ++   L      LE L+++ N L+          A L  L L+ N      
Sbjct: 69  HLSHNQIS-DL-SPLK-DLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNEL--RD 120

Query: 334 PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393
             SL    +LE L + NN L   +   LG L+ L+ + +  N +     +   +L  +  
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNW 176

Query: 394 LDISDNNIS 402
           +D++     
Sbjct: 177 IDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 33/184 (17%), Positives = 68/184 (36%), Gaps = 16/184 (8%)

Query: 266 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLE 325
            +      +L    +T  + +        +++    N+N++    +      NLK L L 
Sbjct: 17  GLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLS 71

Query: 326 GNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF 385
            N+ + ++   L   + LE L +N N L       + +   L  + + NN L        
Sbjct: 72  HNQ-ISDLS-PLKDLTKLEELSVNRNRLKNLNG--IPSAC-LSRLFLDNNELRDTDS--L 124

Query: 386 CQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 445
             L +L+IL I +N +  S+        ++ + L  N +      G       +  +DL+
Sbjct: 125 IHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLT 180

Query: 446 YNRL 449
             + 
Sbjct: 181 GQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           + +  L+ LS++ +   R+ +        L  L++DNN+LR +    L ++ +L IL + 
Sbjct: 82  KDLTKLEELSVNRN---RLKNLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIR 136

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
           +N+L    S   L  L+ +E L L  N      +        ++ +      + 
Sbjct: 137 NNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 40/245 (16%), Positives = 87/245 (35%), Gaps = 29/245 (11%)

Query: 39  GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
               L +  +  +    +   +      ++ ++  +  ++ +    S + +   T+++EL
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 99  MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED 158
            LS+N  QI   L P  + ++L+      N++   +    S       LSRL L +   +
Sbjct: 69  HLSHN--QI-SDLSPLKDLTKLEELSVNRNRLK-NLNGIPSA-----CLSRLFLDN---N 116

Query: 159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSH 218
            +     L H  +LE + + + K+        L   +KL  L +  + +       +   
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNT--GGLTRL 171

Query: 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI--PSSFGNMKFLQILDLS 276
           K++  +D++          E     P LY+ N   +  DG    P    N        + 
Sbjct: 172 KKVNWIDLTGQK----CVNEPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVL 226

Query: 277 NNHLT 281
                
Sbjct: 227 WELPV 231

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
           EIP +L    ++  + L  N++    P        L+ I + NN +  L P  F  L SL
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 392 QILDISDNNISGSLPA-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
             L +  N I+  LP   F  L S++ + L+ N ++  L+   F +  +L  L L  N+L
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

Query: 450 NGSIPD 455
             +I  
Sbjct: 141 Q-TIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 246 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305
           + +  N++  +    P +F   K L+ +DLSNN ++ E+      G  +L SL L  N +
Sbjct: 37  IRLEQNTIKVIP---PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 306 E---GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLG 362
                 +F     L +L+LL L  N+       +     +L  L L +N L         
Sbjct: 93  TELPKSLFEG---LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 363 NLTWLQYIIMPNN 375
            L  +Q + +  N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 293 VNLESLALSNNN---LEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN 349
             +  + L  N    +    FS       L+ + L  N+     P +     SL  L L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFS---PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88

Query: 350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF 409
            N ++         L  LQ +++  N +  L    F  L +L +L + DN +       F
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 410 HPL-SIKQVHLSKN 422
            PL +I+ +HL++N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPW-CLANMTSLRILDV 75
               L+ + LS+ N    L       L  L  L +  N +   LP      + SL++L +
Sbjct: 54  PYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENN 128
           ++N++   +       L ++  L L +N  Q  I+   F     ++  +   N
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            ++  + L  +    I          L+ + + NN +    P     + SL  L +  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP--FFNHSRLKFFYAENNQI 130
           +T  +  S    L S++ L+L+ N       L    F +   L      +N++
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKIN---CLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 3   TRIALNTSFLQIIGE----SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG 58
            RI L+ + +  +       + SL  L L  +  + +       L  LQ L ++ N +  
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118

Query: 59  SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
                  ++ +L +L +  N+L  +I+      L +I+ + L+ N F
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 26/194 (13%)

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFN-LANLKLLQLEGNRF 329
              +L    +T  + ++      +++ +  +N++++     +    L N++ L L GN+ 
Sbjct: 22  IKANLKKKSVTDAVTQN---ELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL 75

Query: 330 VGEIPQSLS---KCSSLEGLHLNNN---SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPV 383
                  +S   + ++L  L L  N   SL   +   L NL  L    +  N L+ L   
Sbjct: 76  -----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV---LVENQLQSLPDG 127

Query: 384 EFCQLDSLQILDISDNNISGSLPA-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVT 441
            F +L +L  L+++ N +  SLP   F  L+ + ++ LS N L   L  G F   + L  
Sbjct: 128 VFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKD 185

Query: 442 LDLSYNRLNGSIPD 455
           L L  N+L  S+PD
Sbjct: 186 LRLYQNQLK-SVPD 198

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNN---NLEGHMFSRNFNLANLKLLQLEGN 327
             L L+NN  T      +      L  +  SNN   ++E   F      + +  + L  N
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSN 91

Query: 328 RFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWL-GNLTWLQYIIMPNNHLEGLIPVEFC 386
           R      +      SL+ L L +N ++  +       L+ ++ + + +N +  + P  F 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 387 QLDSLQILDISDN 399
            L SL  L++  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 274 DLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGE 332
           D SN  L  +IPEH+         L L+NN       +  F  L  L+ +    N+    
Sbjct: 17  DCSNQKLN-KIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392
              +    S +  + L +N L     +    L  L+ +++ +N +  +    F  L S++
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132

Query: 393 ILDISDNNISGSLPACFHPL-SIKQVHLSKN 422
           +L + DN I+   P  F  L S+  ++L  N
Sbjct: 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 341 SSLEGLHLNNNSLSGRIPR-WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
                L LNNN  +          L  L+ I   NN +  +    F     +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 400 NISGSLPA-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
            +  ++    F  L S+K + L  N +   +   +F   SS+  L L  N++  ++  
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 224 LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 283
           L ++ N F       I   LP L   N S N +      +F     +  + L++N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 284 IPEHLAVGCVNLESLALSNNNLE---GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC 340
           +   +  G  +L++L L +N +       F     L++++LL L  N+     P +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 341 SSLEGLHLNNN 351
            SL  L+L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 20  PSLKYLSLSDSNSSRILDRGL-CSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN 78
                L L+++  + +   G+   L  L+++   NN +           + +  + ++SN
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 79  QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP--FFNHSRLKFFYAENNQI 130
           +L  ++       L S++ LML +N       +    F   S ++     +NQI
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT---CVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPW-CLANMTSLRILD 74
           E    +  + L+ SN    +   +   L  L+ L + +N +   +       ++S+R+L 
Sbjct: 78  EGASGVNEILLT-SNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLS 135

Query: 75  VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
           +  NQ+T +++      L S+  L L  N F 
Sbjct: 136 LYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
            ++ + K+L+LS +N  +I    L  + +L+ L +  N ++  +    A   +L  L +S
Sbjct: 45  STLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQ 136
            NQ+    S S +  L ++  L +SNN       ++      +L+      N +  +  +
Sbjct: 102 YNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158

Query: 137 SHSL 140
           +++ 
Sbjct: 159 NNAT 162

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLV-HLQELYIDNN---DLRGSLPWCLANMTSLRI 72
             M +L+ LSL  +   +I    L ++   L+EL+I  N    L G     +  + +LR+
Sbjct: 67  SGMENLRILSLGRNLIKKI--ENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRV 119

Query: 73  LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLK 121
           L +S+N++T       L  L  +E+L+L+ N            +  R++
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 283 EIPEHLAVGCVNLESLALSN--NNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC 340
              E  +V     E + L      +E  M +    L   K L L  N    +I  SLS  
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGM 69

Query: 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNN 400
            +L  L L  N +  +I         L+ + +  N +  L  +E  +L +L++L +S+N 
Sbjct: 70  ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNK 126

Query: 401 IS 402
           I+
Sbjct: 127 IT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 16/121 (13%)

Query: 16  GESMPSLKYLSLSDSNSS-RILDRGLCSLVHLQELYIDNN---DLRGSLPWCLANMTSLR 71
                  + + L         +D  L +L   + L +  N    +       L+ M +LR
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLR 73

Query: 72  ILDVSSNQLTGSISSSPLVHLT-SIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
           IL +  N +        L  +  ++EEL +S N      SL        L+  Y  NN+I
Sbjct: 74  ILSLGRNLIK---KIENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVLYMSNNKI 127

Query: 131 N 131
            
Sbjct: 128 T 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 15/121 (12%)

Query: 260 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANL 319
           + ++   +K  + L LS N++  +I   L+ G  NL  L+L  N ++  + + +     L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 320 KLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW-----LGNLTWLQYIIMPN 374
           + L +  N+        + K  +L  L+++NN    +I  W     L  L  L+ +++  
Sbjct: 96  EELWISYNQI--ASLSGIEKLVNLRVLYMSNN----KITNWGEIDKLAALDKLEDLLLAG 149

Query: 375 N 375
           N
Sbjct: 150 N 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 23/139 (16%), Positives = 55/139 (39%), Gaps = 30/139 (21%)

Query: 313 NFNLANLKLLQLEGN-RFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII 371
           +      + ++L G    + ++  +LS   + + L L+ N++  +I   L  +  L+ + 
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILS 76

Query: 372 MPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG 431
           +  N ++ +  ++    D+L+ L IS N I+          S+  +              
Sbjct: 77  LGRNLIKKIENLDAV-ADTLEELWISYNQIA----------SLSGIE------------- 112

Query: 432 TFFNCSSLVTLDLSYNRLN 450
                 +L  L +S N++ 
Sbjct: 113 ---KLVNLRVLYMSNNKIT 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 15  IGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILD 74
           +G ++     +  SD+   ++   G   L  L+ L ++NN +          +  L  L 
Sbjct: 37  LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94

Query: 75  VSSNQLTGSISSSPLVHLTSIEELMLSNN 103
           +++N L       PL  L S+  L +  N
Sbjct: 95  LTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCS-LVHLQELYIDNNDLRGSLPWCLANMTSLRILDV 75
            +    + L L       I    L + L     +   +N++R  L      +  L+ L V
Sbjct: 16  TNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLV 71

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
           ++N++   I       L  + EL+L+NN       L+P  +   L +     N +
Sbjct: 72  NNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 29/142 (20%)

Query: 262 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL 321
           + + N    + LDL    +   I E+L       +++  S+N +                
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIR--------------- 55

Query: 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI 381
            +L+G                L+ L +NNN +          L  L  +I+ NN L  L 
Sbjct: 56  -KLDG----------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 382 PVEFCQ-LDSLQILDISDNNIS 402
            ++    L SL  L I  N ++
Sbjct: 105 DLDPLASLKSLTYLCILRNPVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 312 RNFNLANLKLLQLEGNRF-VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI 370
           RN   +++K L L+ +R   G++     +   LE L   N  L+  I   L  L  L+ +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 371 IMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
            + +N + G + V   +  +L  L++S N I 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 4/120 (3%)

Query: 12  LQIIGESMPSLKYLSLSDSNSSRI-LDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSL 70
           L++   +   +K L L +S S+   L+        L+ L   N  L  S+   L  +  L
Sbjct: 9   LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKL 66

Query: 71  RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
           + L++S N+++            ++  L LS N  +   ++EP      LK     N ++
Sbjct: 67  KKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 27/134 (20%)

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329
           ++ L L N+       E L      LE L+  N  L                  +     
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----------------SIAN--- 59

Query: 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVE-FCQL 388
                  L K + L+ L L++N +SG +         L ++ +  N ++ L  +E   +L
Sbjct: 60  -------LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112

Query: 389 DSLQILDISDNNIS 402
           ++L+ LD+ +  ++
Sbjct: 113 ENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN 302
           +  L + N+  N  +G +       + L+ L   N  LT  I  +L      L+ L LS+
Sbjct: 19  VKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLP-KLNKLKKLELSD 73

Query: 303 NNLEGHMFSRNFNLANLKLLQLEGNRFVG-EIPQSLSKCSSLEGLHLNNN 351
           N + G +        NL  L L GN+       + L K  +L+ L L N 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 312 RNFNLANLKLLQLEGNRF-VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI 370
           RN   A ++ L L+  +   G+I    ++  +LE L L N  L   +   L  L  L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 371 IMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402
            +  N + G + +   +L +L  L++S N + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 12  LQIIGESMPSLKYLSLSDSNSSRILDRGLCS-LVHLQELYIDNNDLRGSLPWCLANMTSL 70
           L++   +  +++ L L +  S+     GL +  V+L+ L + N  L  S+   L  +  L
Sbjct: 16  LELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKL 73

Query: 71  RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
           + L++S N++           L ++  L LS N  +   +LEP      LK     N ++
Sbjct: 74  KKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 27/134 (20%)

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329
           ++ L L N        E L    VNLE L+L N  L                  +     
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----------------SVSN--- 66

Query: 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVE-FCQL 388
                  L K   L+ L L+ N + G +      L  L ++ +  N L+ +  +E   +L
Sbjct: 67  -------LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119

Query: 389 DSLQILDISDNNIS 402
           + L+ LD+ +  ++
Sbjct: 120 ECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 257 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNL 316
           DG I         L+ L L N  L   +  +L      L+ L LS N + G +      L
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLP-KLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 317 ANLKLLQLEGNRF--VGEIPQSLSKCSSLEGLHLNNNSLS 354
            NL  L L GN+   +  + + L K   L+ L L N  ++
Sbjct: 95  PNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 19/148 (12%)

Query: 235 IPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT---GEIPEHLAVG 291
           +P  I      LY+ +N +  L+   P  F ++  L+ L L +N L      + + L   
Sbjct: 34  VPAGIPTNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSNQLGALPVGVFDSL--- 87

Query: 292 CVNLESLALSNN---NLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHL 348
              L  L L  N    L   +F R   L +LK L +  N+   E+P+ + + + L  L L
Sbjct: 88  -TQLTVLDLGTNQLTVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLAL 142

Query: 349 NNNSLSGRIPRW-LGNLTWLQYIIMPNN 375
           + N L   IP      L+ L +  +  N
Sbjct: 143 DQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 20/138 (14%)

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL----EGHMFSRNFNLANLKLLQLEG 326
           QIL L +N +T ++   +    +NL+ L L +N L     G +F     L  L +L L  
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVG-VFDS---LTQLTVLDLGT 97

Query: 327 NRFVGEIPQSLS-----KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI 381
           N+        L      +   L+ L +  N L+  +PR +  LT L ++ +  N L+ + 
Sbjct: 98  NQL-----TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151

Query: 382 PVEFCQLDSLQILDISDN 399
              F +L SL    +  N
Sbjct: 152 HGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 12/117 (10%)

Query: 344 EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG 403
           + L+L++N ++   P    +L  L+ + + +N L  L    F  L  L +LD+  N ++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 404 SLPA-CFHPLS-IKQVHLSKNMLHGQLK---RGTFFNCSSLVTLDLSYNRLNGSIPD 455
            LP+  F  L  +K++ +  N    +L    RG     + L  L L  N+L  SIP 
Sbjct: 102 VLPSAVFDRLVHLKELFMCCN----KLTELPRG-IERLTHLTHLALDQNQLK-SIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 22  LKYLSLSD----SNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           L  L L         S + DR    LVHL+EL++  N L   LP  +  +T L  L +  
Sbjct: 90  LTVLDLGTNQLTVLPSAVFDR----LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNN 103
           NQL  SI       L+S+    L  N
Sbjct: 145 NQLK-SIPHGAFDRLSSLTHAYLFGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 346 LHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL 405
           L+L+ N  +  +P+ L N   L  I + NN +  L    F  +  L  L +S N +   +
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 406 PA-CFHPL-SIKQVHLSKNMLHGQLK---RGTFFNCSSLVTLDLSYN 447
           P   F  L S++ + L  N     +     G F + S+L  L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGN----DISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN 304
            LY+  N        +P    N K L ++DLSNN ++  +          L +L LS N 
Sbjct: 35  ELYLDGNQFT----LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR 89

Query: 305 LE---GHMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNN 351
           L       F     L +L+LL L GN  +  +P+ + +  S+L  L +  N
Sbjct: 90  LRCIPPRTFDG---LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 47  QELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
            ELY+D N     +P  L+N   L ++D+S+N+++ ++S+    ++T +  L+LS N  +
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 107 IPISLEP--FFNHSRLKFFYAENNQI 130
               + P  F     L+      N I
Sbjct: 92  ---CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 29  DSNSSRILDRGLCSLVHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSS 87
           D N   ++ + L +  HL  + + NN +  +L     +NMT L  L +S N+L   I   
Sbjct: 39  DGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-CIPPR 96

Query: 88  PLVHLTSIEELMLSNNHFQ-IP 108
               L S+  L L  N    +P
Sbjct: 97  TFDGLKSLRLLSLHGNDISVVP 118

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 26/176 (14%)

Query: 235 IPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 294
           +P  I      L + +  +  L     ++F  +  L  L+L  N L   +   +      
Sbjct: 29  VPSGIPADTEKLDLQSTGLATLS---DATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTE 84

Query: 295 LESLALSNN---NLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS-----KCSSLEGL 346
           L +L L+NN   +L   +F     L  L  L L GN+      +SL      + + L+ L
Sbjct: 85  LGTLGLANNQLASLPLGVFDH---LTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKEL 136

Query: 347 HLNNNSLSGRIPRWLG---NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
            LN N L   IP   G    LT LQ + +  N L+ +    F +L  LQ + +  N
Sbjct: 137 RLNTNQLQ-SIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 17/147 (11%)

Query: 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN---SLSGRIPRWLGNLTWLQYIIMP 373
           A+ + L L+          +    + L  L+L+ N   +LS  +   L  L  L    + 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG---LA 91

Query: 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA-CFHPL-SIKQVHLSKNMLHGQLKR- 430
           NN L  L    F  L  L  L +  N +  SLP+  F  L  +K++ L+ N    QL+  
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN----QLQSI 146

Query: 431 --GTFFNCSSLVTLDLSYNRLNGSIPD 455
             G F   ++L TL LS N+L  S+P 
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQ-SVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 10/117 (8%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGL-CSLVHLQELYIDNNDLRGSLP-WCLANMTSLRILDV 75
            +  L +L+L D N  + L  G+   L  L  L + NN L  SLP     ++T L  L +
Sbjct: 57  GLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYL 114

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP--FFNHSRLKFFYAENNQI 130
             NQL  S+ S     LT ++EL L+ N  Q   S+    F   + L+      NQ+
Sbjct: 115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ---SIPAGAFDKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 23  KYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW-CLANMTSLRILDVSSNQLT 81
           + L L  +  + + D     L  L  L +D N L+ +L      ++T L  L +++NQL 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 82  GSISSSPLVHLTSIEELMLSNNHFQIPISLEP--FFNHSRLKFFYAENNQI 130
            S+      HLT +++L L  N  +   SL    F   ++LK      NQ+
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK---SLPSGVFDRLTKLKELRLNTNQL 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 22  LKYLSLSD----SNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW-CLANMTSLRILDVS 76
           L  L L      S  S + DR    L  L+EL ++ N L+ S+P      +T+L+ L +S
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDR----LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHF 105
           +NQL  S+       L  ++ + L  N F
Sbjct: 164 TNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 19/115 (16%)

Query: 47  QELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
           ++L + +  L          +T L  L++  NQL  ++S+     LT +  L L+NN   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 107 IPISLEP--FFNHSRLKFFYAENNQINAEITQSHSLIPPK-F----QLSRLSLSS 154
              SL    F + ++L   Y   NQ+     +S   +P   F    +L  L L++
Sbjct: 97  ---SLPLGVFDHLTQLDKLYLGGNQL-----KS---LPSGVFDRLTKLKELRLNT 140

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 75/481 (15%), Positives = 145/481 (30%), Gaps = 69/481 (14%)

Query: 6   ALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLA 65
              T ++  I  ++  LK +         + D  L  L                     A
Sbjct: 98  GYVTPWVTEISNNLRQLKSVHFRRMI---VSDLDLDRLAK-------------------A 135

Query: 66  NMTSLRILDVSS-NQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPFFNHSR--- 119
               L  L +   +  T     S + H   I+ L++  + F  +    L     H+    
Sbjct: 136 RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195

Query: 120 -LKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLS 178
            L F+  E  +I+ +  ++ +       L  + +     + +    F     +LE     
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRS--LVSVKVG--DFEILELVGFFKAAANLEEFCGG 251

Query: 179 HIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSH--KQLRLLDISTNNFRGHIP 236
            +  +   P     N     +L  +  S  GP  +PI      Q+R LD+          
Sbjct: 252 SLNEDIGMPE-KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 237 VEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP----------- 285
             +    P+L V        D  +       K L+ L +        +            
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370

Query: 286 EHLAVGCVNLESLALSNNNL--EG--HMFSRNFNLANLKLLQLEGNRFVGEIPQS----- 336
             LA GC  LE +A+  +++  E    + +   NL + +L+ L+    + ++P       
Sbjct: 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430

Query: 337 -LSKCSSLEGLHLNNNSLS------GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD 389
            L  C  L                   I ++  N+ W+  +       EGL+        
Sbjct: 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGLMEF-SRGCP 488

Query: 390 SLQILDISDNNIS--GSLPACFHPLSIKQVHLSKNMLH--GQLKRGTFFNCSSLVTLDLS 445
           +LQ L++     S      A     S++ + +        GQ          ++  +   
Sbjct: 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548

Query: 446 Y 446
            
Sbjct: 549 R 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 49/383 (12%), Positives = 119/383 (31%), Gaps = 39/383 (10%)

Query: 1   MSTRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVH----LQELYIDNNDL 56
            S+    +  +L  + +   SL+ L+   +  ++I  + L ++      L  + + + ++
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232

Query: 57  --RGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPF 114
                     AN+       ++ +        + LV    +  L LS         L PF
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLCRLGLSYMGPNEMPILFPF 291

Query: 115 FNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEY 174
              ++++        +  E     +LI     L  L   +   D         +   L+ 
Sbjct: 292 A--AQIRKLDLLYALLETE--DHCTLIQKCPNLEVLETRNVIGD-RGLEVLAQYCKQLKR 346

Query: 175 VDLSHIKMNGEFPTW-----------LLENNTKL--IQLSVVNDSLAGPFRLPIHSH--K 219
           + +                       L +   +L  + + V + +      +  +     
Sbjct: 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC 406

Query: 220 QLRLLDISTNNFRGHIPVEIGDV--------LPSLYVFNNSMNALDGSIPSSFGNMKFLQ 271
             RL+ +        +P++ G          L     +       D  +         ++
Sbjct: 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466

Query: 272 ILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL-EGHMFSRNFNLANLKLLQLEGNR-- 328
            + L     + E     + GC NL+ L +      E  + +    L +L+ L ++G R  
Sbjct: 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

Query: 329 FVGEIPQSLSK-CSSLEGLHLNN 350
             G+    +++   ++E +    
Sbjct: 527 MTGQDLMQMARPYWNIELIPSRR 549

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 69/459 (15%), Positives = 134/459 (29%), Gaps = 77/459 (16%)

Query: 6   ALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLV----HLQELYIDNNDL--RGS 59
                +++ +  S   L+ + L       + D  L  +     + + L + + +      
Sbjct: 91  GYVYPWIEAMSSSYTWLEEIRLK---RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG 147

Query: 60  LPWCLANMTSLRILDVSSNQLTGSISSSPLVHL----TSIEELMLSNNHFQI-PISLEPF 114
           L    A   +L+ LD+  + +   +S   L H     TS+  L +S    ++   +LE  
Sbjct: 148 LAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206

Query: 115 FNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEY 174
                                           L  L L+            L     LE 
Sbjct: 207 VTRCP--------------------------NLKSLKLNRAVPLE-KLATLLQRAPQLEE 239

Query: 175 VDLSHIKMNGEFPTW-----LLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTN 229
           +             +      L    +L  LS   D++            +L  L++S  
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 230 NFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS---------NNHL 280
             + +  V++    P L          D  +       K L+ L +          N  L
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359

Query: 281 TGEIPEHLAVGCVNLESLALSNNNL--EG--HMFSRNFNLANLKLLQLEGNRFVGEIPQS 336
           T +    +++GC  LES+      +       +     N+   +L  +E         + 
Sbjct: 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419

Query: 337 L--------SKCSSLEGLHLN----NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVE 384
           L          C  L  L L+    +      I  +   +  L  +    +   G+  V 
Sbjct: 420 LDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY-IGTYAKKMEML-SVAFAGDSDLGMHHV- 476

Query: 385 FCQLDSLQILDISDNNIS--GSLPACFHPLSIKQVHLSK 421
               DSL+ L+I D        L       +++ + +S 
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 68/428 (15%), Positives = 135/428 (31%), Gaps = 49/428 (11%)

Query: 3   TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLV----HLQELYIDNNDLRG 58
            R+ +    L++I +S  + K L L  S+       GL ++     +L+EL +  +D+  
Sbjct: 113 KRMVVTDDCLELIAKSFKNFKVLVL--SSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170

Query: 59  SLPWCLA----NMTSLRILDVSSNQLTGSISSSPLVHL----TSIEELMLSNNHFQIPIS 110
                L+      TSL  L++S   L   +S S L  L     +++ L L+     +   
Sbjct: 171 VSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKL 227

Query: 111 LEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED--GVTFPKFLYH 168
                   +L+                  L         L   SG+ D      P     
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 169 QHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVND-SLAGPFRLPIHSHKQLRLLDIS 227
              L  ++LS+  +       LL    KL +L V++    AG   L       LR L + 
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD-LRELRVF 346

Query: 228 TNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH 287
            +                      ++   +  + S       L+ +      +T      
Sbjct: 347 PSEPFVM---------------EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391

Query: 288 LAVGCVNLESLALSNNNLEGH-----------MFSRNFNLANLKLLQLEGNRFVGEIPQS 336
           +A    N+    L     +               +   +  +L+ L L G          
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI 451

Query: 337 LSKCSSLEGLHLNNNSLSGR-IPRWLGNLTWLQYIIMPN-NHLEGLIPVEFCQLDSLQIL 394
            +    +E L +     S   +   L     L+ + + +    +  +     +L++++ L
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511

Query: 395 DISDNNIS 402
            +S  ++S
Sbjct: 512 WMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 54/434 (12%), Positives = 113/434 (26%), Gaps = 65/434 (14%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
           P ++ + L         D  L        +Y     +  S          L  + +    
Sbjct: 66  PKVRSVELKGK--PHFADFNLVPDGWGGYVYPWIEAMSSSYT-------WLEEIRLKRMV 116

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNH-SRLKFFYAENNQINAEITQSH 138
           +T            + + L+LS+        L         LK      + ++       
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176

Query: 139 SLIPPKF-QLSRLSLSSGYEDGVTFP---KFLYHQHDLEYVDLSHIKMNGEFPTWLLENN 194
           S  P  +  L  L++S      V+F    + +    +L+ + L+      +  T LL+  
Sbjct: 177 SHFPDTYTSLVSLNIS-CLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRA 234

Query: 195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMN 254
            +L +L                                             L   +   +
Sbjct: 235 PQLEELG-------------------TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 255 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF 314
           A+   +P+ +     L  L+LS   +       L   C  L+ L + +   +  +     
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
              +L+ L++  +      P        L  +                    L+ ++   
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSV--------------SMGCPKLESVLYFC 381

Query: 375 NHL--EGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGT 432
             +    LI +      ++    +              PL I    + +           
Sbjct: 382 RQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE----------- 429

Query: 433 FFNCSSLVTLDLSY 446
             +C  L  L LS 
Sbjct: 430 --HCKDLRRLSLSG 441

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 18/103 (17%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSL-------VHLQELYIDNNDLRGSLPWCLANM----T 68
           P L+ ++L++     I    L +         ++++  I        + + LA M     
Sbjct: 36  PDLEEVNLNNIM--NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN 93

Query: 69  SLRILDVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQI 107
           +L+ L+V SN ++G    ++  + L   TS+ EL + N    +
Sbjct: 94  TLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPL 135

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 36/172 (20%)

Query: 197 LIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV-LPSL--------- 246
           +  L+ +         +       L+ L+I +      +  +I    LP+L         
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 247 --YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV--NLESLALSN 302
             Y F+  MN               L+ L + +      + E      +   LE++ +S 
Sbjct: 231 EDYGFDGDMNVFRPLFSK--DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288

Query: 303 NNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS 354
             L                     +     +   + K   L+ +++  N LS
Sbjct: 289 GVL--------------------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 22/116 (18%)

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNN---NLEGHMFSRNFNLANLKLLQLEGN 327
             L L++N L     + L     +L  L L  N    +E + F      ++++ LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 328 RFVGEIPQSLS-----KCSSLEGLHLNNNSLSGRIPRWLG---NLTWLQYIIMPNN 375
           +      + +S         L+ L+L +N +S  +    G   +L  L  + + +N
Sbjct: 89  KI-----KEISNKMFLGLHQLKTLNLYDNQIS-CVMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 346 LHLNNNSLSGRIPRWL-GNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGS 404
           L LN+N L       L G L  L  + +  N L G+ P  F     +Q L + +N I   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 405 LPA-CFHPL-SIKQVHLSKNMLHGQLK---RGTFFNCSSLVTLDLSYN 447
           +    F  L  +K ++L  N    Q+     G+F + +SL +L+L+ N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDN----QISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPW-CLANMTSLRILDV 75
             +P L  L L  +  + I         H+QEL +  N ++  +       +  L+ L++
Sbjct: 51  GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNL 109

Query: 76  SSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
             NQ++  +      HL S+  L L++N F
Sbjct: 110 YDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNN 400
           +    L L  NSL          LT L  + +  N L+ L    F +L SL  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 401 ISGSLPA-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
           +  SLP   F  L+ +K++ L+ N L   L  G F   + L  L L  N+L  S+PD
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 43/150 (28%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 235 IPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 294
           +P  I      L +  NS+ +L       F  +  L  L L  N L   +P  +     +
Sbjct: 22  VPTGIPAQTTYLDLETNSLKSLP---NGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 295 LESLALSNN---NLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS-----KCSSLEGL 346
           L  L LS N   +L   +F +   L  LK L L  N+      QSL      K + L+ L
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDL 129

Query: 347 HLNNNSLSGRIPR-WLGNLTWLQYIIMPNN 375
            L  N L   +P      LT LQYI + +N
Sbjct: 130 RLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 37/327 (11%), Positives = 94/327 (28%), Gaps = 48/327 (14%)

Query: 24  YLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLA-----NMTSLRILDVSSN 78
              L+    S  ++        +  L +  N+L       L         S+  L++S N
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 79  QLT----GSISSSPLVHLTSIEELMLSNNHFQ----IPISLEPFFNHSRLKFFYAENNQI 130
            L       +         ++  L LS N         +          +       N  
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 131 NAEITQ--SHSLIPPKFQLSRLSLSS---GYEDGVTFPKFLYHQHD-LEYVDLSHIKMNG 184
           +++ +     +       ++ L+L     G +      + L      +  ++L    +  
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 185 EFPTWLLE----NNTKLIQLSVVN--------DSLAGPFRLPIHSHKQLRLLDISTNNFR 232
           +    L +        +  L +            LA  F         +  L++  N   
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS---SIPNHVVSLNLCLNCLH 238

Query: 233 GHIPVEIGDVLP------SLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTG 282
           G     +  +        ++Y+  + +  +      ++ ++F N++ + ++D +   +  
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

Query: 283 E----IPEHLAVGCVNLESLALSNNNL 305
                I   +       +  +L N  L
Sbjct: 299 SHSIPISNLIRELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 45/225 (20%), Positives = 76/225 (33%), Gaps = 47/225 (20%)

Query: 266 NMKFLQILDLSNNHLTGE----IPEHLAVGCVNLESLALSNNNLE---GHMFSRNFNLAN 318
               +  L+LS N L  +    + + LA    N+ SL LS N L         +      
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 319 LKL--LQLEGNRF----VGEIPQSLSKC-SSLEGLHLNNNSLSGRIPRWLGNLTWLQYII 371
             +  L L  N F      E  Q+ S   +S+  L+L  N L  +    L      Q + 
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI-----QILA 163

Query: 372 MPNNHLEGL------IPVEFCQL---------DSLQILDISDNNISGS--------LPAC 408
               ++  L      +  + C            S+  LD+S N +             + 
Sbjct: 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 409 FHPLSIKQVHLSKNMLHG---QLKRGTFFNCSSLVTLDLSYNRLN 450
             P  +  ++L  N LHG   +  +    +   L T+ L Y+ + 
Sbjct: 224 --PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 38/268 (14%), Positives = 70/268 (26%), Gaps = 53/268 (19%)

Query: 216 HSHKQLRLLDISTNNFRGHIPVEIGDVL----PSLYVFNNSMNALDGSIPSSFGNM---- 267
                + +LD+  N+F      E          S+   N   N L          +    
Sbjct: 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165

Query: 268 -KFLQILDLSNNHLTGE----IPEHLAVGCVNLESLALSNNNLE-------GHMFSRNFN 315
              +  L+L  N+L  +    + + LA    ++ SL LS N L         ++FS   N
Sbjct: 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225

Query: 316 LANLKLLQLEGNRF----VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII 371
             ++  L L  N      +  +         L+ ++L+ + +          L       
Sbjct: 226 --HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL------- 276

Query: 372 MPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF------HPLSIKQVHLSKNML- 424
                           +  + ++D +   I  S                    L    L 
Sbjct: 277 -----GAAF-----PNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLI 326

Query: 425 ---HGQLKRGTFFNCSSLVTLDLSYNRL 449
                Q           L     +   L
Sbjct: 327 FAQKHQTNIEDLNIPDELRESIQTCKPL 354

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 59/358 (16%), Positives = 100/358 (27%), Gaps = 105/358 (29%)

Query: 1   MSTRIALNTSFLQIIGESMPSLKYLS--LSDSNSSRILDRGLCSLVHLQELYIDNNDLR- 57
           ++TR    T FL     +  SL + S  L+         + L        L     DL  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-----KSLLLKY----LDCRPQDLPR 320

Query: 58  ---GSLPWCLA---------NMTSLRILDVSSNQLTGSISSSPLVHLTSIE------ELM 99
               + P  L+           T      V+ ++LT  I SS L  L   E       L 
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLS 379

Query: 100 LSNNHFQIPIS-----------------LEPFFNHS-----------RLKFFYAENNQIN 131
           +      IP                   +     +S            +   Y E     
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 132 AEITQSHSLIPPKFQLSRL----SLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFP 187
                 H  I   + + +      L   Y D   +    +H  ++E     H +    F 
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-----HPERMTLFR 494

Query: 188 TWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLY 247
              L  + + ++  + +DS A      I +     L  +    ++ +I     D      
Sbjct: 495 MVFL--DFRFLEQKIRHDSTAWNASGSILN----TLQQL--KFYKPYICDN--DPKYERL 544

Query: 248 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLESLALSNNN 304
           V     NA+          + FL            +I E+L      +L  +AL   +
Sbjct: 545 V-----NAI----------LDFLP-----------KIEENLICSKYTDLLRIALMAED 576

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 8/187 (4%)

Query: 172 LEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDIS-TNN 230
           ++++DLS+  +       +L   +KL  LS+    L+ P    +  +  L  L++S  + 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 231 FRGHIPVEIGDVLPSLYVFN--NSMNALDGSIPSSFG-NMKFLQILDLS--NNHLTGEIP 285
           F       +      L   N     +  +  +  +     + +  L+LS    +L     
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 286 EHLAVGCVNLESLALSN-NNLEGHMFSRNFNLANLKLLQLEGNRFVGEI-PQSLSKCSSL 343
             L   C NL  L LS+   L+   F   F L  L+ L L     +       L +  +L
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274

Query: 344 EGLHLNN 350
           + L +  
Sbjct: 275 KTLQVFG 281

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 21/156 (13%)

Query: 266 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE-------GHMFSRNFNLAN 318
               L  ++L++  L       L    +    L L  N+L          +     +   
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH--DQCQ 156

Query: 319 LKLLQLEGNRF----VGEIPQSLSKCSSLEGLHLNNNSLSGR----IPRWLGNLTWLQYI 370
           +  L+L  N      V  + + L+  +S+  L L +  L       +   L     LQ +
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216

Query: 371 IMPNNHLEGLIPVEFCQL----DSLQILDISDNNIS 402
            +  N       +   +      SL++L +  N +S
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 10/112 (8%)

Query: 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNN 400
           SS   L L +N L          LT L  + +  N ++ L    F +L  L IL + +N 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 401 ISGSLPA-CFHPL-SIKQVHLSKNMLHGQLK---RGTFFNCSSLVTLDLSYN 447
           +  SLP   F  L  +K++ L  N    QLK    G F   +SL  + L  N
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALDTN----QLKSVPDGIFDRLTSLQKIWLHTN 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.18
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.33
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.75
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	85.14
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	81.71

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.9e-49  Score=398.16  Aligned_cols=439  Identities=32%  Similarity=0.432  Sum_probs=326.4

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG   82 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~   82 (456)
                      ++|.+.+..+.  .. +++|++|++++|.++...+. +.++++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus       186 s~n~l~~~~~~--~~-l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  261 (768)
T 3rgz_A          186 SGNKISGDVDV--SR-CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG  261 (768)
T ss_dssp             CSSEEESCCBC--TT-CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred             CCCcccccCCc--cc-CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC
Confidence            56777776654  55 88888888888887665543 7888888888888888887778888888888888888888775


Q ss_pred             ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCc
Q 048657           83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF  162 (456)
Q Consensus        83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  162 (456)
                      .++.  . .+++|++|++++|.+.+..+......+++|+.|++++|.+.......+   ....+|+.|++..+... +.+
T Consensus       262 ~~~~--~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~-~~i  334 (768)
T 3rgz_A          262 PIPP--L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF---GSCSLLESLALSSNNFS-GEL  334 (768)
T ss_dssp             SCCC--C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG---GGCTTCCEEECCSSEEE-EEC
T ss_pred             ccCc--c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH---hcCCCccEEECCCCccc-CcC
Confidence            5554  2 667777777777777644443333334677777777776654332222   22335555555333221 122


Q ss_pred             hH-HhhcCCCccEEEecCcccccccchhhhh--------------------------ccccceeeeecccCcCCCCCcCc
Q 048657          163 PK-FLYHQHDLEYVDLSHIKMNGEFPTWLLE--------------------------NNTKLIQLSVVNDSLAGPFRLPI  215 (456)
Q Consensus       163 ~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~--------------------------~~~~L~~L~l~~~~~~~~~~~~l  215 (456)
                      +. .+..+++|+.|++++|.+.+.++..+..                          .++.|++|++.+|.+.+..+..+
T Consensus       335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  414 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL  414 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred             CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence            22 2444555555555555444333333211                          14566677777766666666777


Q ss_pred             cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657          216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL  295 (456)
Q Consensus       216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L  295 (456)
                      ..+++|+.|++++|.+.+..|..+.. +++|+.++++.|.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..+++|
T Consensus       415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L  492 (768)
T 3rgz_A          415 SNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNL  492 (768)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTC
T ss_pred             hcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH-hcCCCC
Confidence            78888888888888887667766654 7888888888888888888888888889999998888886666654 478889


Q ss_pred             cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCcc---------------
Q 048657          296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW---------------  360 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------  360 (456)
                      ++|++++|++.+..+.++..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..               
T Consensus       493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            99999999888888888888899999999999998888888889999999999988876555433               


Q ss_pred             -------------------------------------------------------ccCCCCCcEEEcCCCcccccCchhc
Q 048657          361 -------------------------------------------------------LGNLTWLQYIIMPNNHLEGLIPVEF  385 (456)
Q Consensus       361 -------------------------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~  385 (456)
                                                                             +..+++|+.|++++|.+++.+|..+
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence                                                                   3345778899999999998899999


Q ss_pred             cCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657          386 CQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       386 ~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      ..+++|+.|++++|.+++.+|..+. .++|++||+++|++.+.+|.. +..+++|+.|++++|+++|.||+
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEECCSSEEEEECCS
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECcCCcccccCCC
Confidence            9999999999999999988887765 789999999999999888887 88899999999999999999995

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-47  Score=388.37  Aligned_cols=440  Identities=30%  Similarity=0.404  Sum_probs=314.6

Q ss_pred             CccccccchhhhH---HhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCC
Q 048657            2 STRIALNTSFLQI---IGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN   78 (456)
Q Consensus         2 ~~~~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   78 (456)
                      +++|.+++..+..   +.+ +++|++|++++|.++...  .+.++++|++|++++|.+.+..|. +.++++|++|++++|
T Consensus       158 Ls~n~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDG-CGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN  233 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTC-CTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred             CCCCccCCcCChhhhhhcc-CCCCCEEECCCCcccccC--CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence            4688999998877   666 999999999999976554  348999999999999999876666 999999999999999


Q ss_pred             ccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCC
Q 048657           79 QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED  158 (456)
Q Consensus        79 ~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  158 (456)
                      .+++.++. .+.++++|++|++++|.+.+..+..   .+++|++|++++|.+.+.....+.  ..+.+|+.|++..+. .
T Consensus       234 ~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~--~~~~~L~~L~Ls~n~-l  306 (768)
T 3rgz_A          234 KLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLS--GACDTLTGLDLSGNH-F  306 (768)
T ss_dssp             CCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSC--TTCTTCSEEECCSSE-E
T ss_pred             cCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHH--hhcCcCCEEECcCCc-C
Confidence            99966665 7899999999999999987544432   789999999999998754443322  123689999995553 3


Q ss_pred             CCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCc-cccEEeCCCCccCC----
Q 048657          159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHK-QLRLLDISTNNFRG----  233 (456)
Q Consensus       159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~----  233 (456)
                      ....+..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+    
T Consensus       307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~  386 (768)
T 3rgz_A          307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP  386 (768)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred             CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence            3456778899999999999999998888877678999999999999988766665555444 55555555555443    


Q ss_pred             ----------------------CCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcC
Q 048657          234 ----------------------HIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG  291 (456)
Q Consensus       234 ----------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~  291 (456)
                                            .+|..+.. +++|+.++++.|.+.+..|..+..+++|+.|++++|.+.+.++..+. .
T Consensus       387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~  464 (768)
T 3rgz_A          387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-Y  464 (768)
T ss_dssp             TTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-G
T ss_pred             hhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-C
Confidence                                  33333332 55566666666665555556666666666666666666544444432 4


Q ss_pred             CCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEE
Q 048657          292 CVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII  371 (456)
Q Consensus       292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  371 (456)
                      +++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            56666666666666655556666666666666666666666666666666677777766666666666666667777777


Q ss_pred             cCCCcccccCchhc------------------------------------------------------------------
Q 048657          372 MPNNHLEGLIPVEF------------------------------------------------------------------  385 (456)
Q Consensus       372 l~~~~~~~~~~~~~------------------------------------------------------------------  385 (456)
                      +++|.+++.+|..+                                                                  
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            77666654433322                                                                  


Q ss_pred             ----cCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657          386 ----CQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       386 ----~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                          ..+++|+.|++++|++++.+|..+. +++|+.|++++|.+++.+|.. |+++++|+.|++++|+++|++|+
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECCCG
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcCCh
Confidence                2245566677777777666665544 567777777777777677766 67777777777777777777774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.9e-46  Score=369.81  Aligned_cols=441  Identities=20%  Similarity=0.194  Sum_probs=233.6

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      .++|.+++..|..+.+ +++|++|++++|.++.+.+++|.++++|++|++++|.+.+..|.++.++++|++|++++|.++
T Consensus        40 Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~  118 (606)
T 3t6q_A           40 FSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS  118 (606)
T ss_dssp             CTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS
T ss_pred             ccCCccCcCChhHhcc-CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc
Confidence            4678888888888888 999999999999888887778899999999999999988777888999999999999999888


Q ss_pred             cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCC------------------
Q 048657           82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPP------------------  143 (456)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~------------------  143 (456)
                       .++...+.++++|++|++++|.+.. .....+..+++|+.|++++|.+.......+.....                  
T Consensus       119 -~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~  196 (606)
T 3t6q_A          119 -SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP  196 (606)
T ss_dssp             -CGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred             -cCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence             5544478888999999999988763 22233444788888888888775432211111110                  


Q ss_pred             ----ccccceeeccCCCC------------------------CCCCc-hHHhhcC--CCccEEEecCcccccccchhhhh
Q 048657          144 ----KFQLSRLSLSSGYE------------------------DGVTF-PKFLYHQ--HDLEYVDLSHIKMNGEFPTWLLE  192 (456)
Q Consensus       144 ----~~~L~~l~l~~~~~------------------------~~~~~-~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~  192 (456)
                          ...++.+++..+..                        ....+ +..+..+  .+++.++++++.+.+. +...+.
T Consensus       197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~-~~~~~~  275 (606)
T 3t6q_A          197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-SSNTFH  275 (606)
T ss_dssp             TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC-CTTTTT
T ss_pred             hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc-CHHHhc
Confidence                11222222211100                        00000 0000000  1344555555544322 222234


Q ss_pred             ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccc-cccCCCCCc
Q 048657          193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQ  271 (456)
Q Consensus       193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~L~  271 (456)
                      .+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+..+. .+++|+.+++++|.+.+.++. .+..+++|+
T Consensus       276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            4555555555555444 2333444555555555555554422222222 244555555555444432222 244445555


Q ss_pred             EEeccCCcCCCccc--chhhcCCCcccEEEccCCcccccccccccc-------------------------cccccEEEc
Q 048657          272 ILDLSNNHLTGEIP--EHLAVGCVNLESLALSNNNLEGHMFSRNFN-------------------------LANLKLLQL  324 (456)
Q Consensus       272 ~L~l~~~~l~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------------~~~L~~L~l  324 (456)
                      +|++++|.+. ...  ...+..+++|++|++++|.+.+..+..+..                         +++|+.|++
T Consensus       354 ~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          354 ELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             EEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             EEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            5555554443 221  111223444555555444444443344444                         444555555


Q ss_pred             cCccccccccccccCCCCCcEEEcCCCcCccc---cCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCcc
Q 048657          325 EGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGR---IPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI  401 (456)
Q Consensus       325 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  401 (456)
                      ++|.+.+..+..+..+++|++|++++|.+++.   .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus       433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence            55544434444444455555555555544431   113344455555555555555444444455555555555555555


Q ss_pred             CCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657          402 SGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  451 (456)
Q Consensus       402 ~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  451 (456)
                      ++..+..+. .++| +|++++|.+. .++...+..+++|+.|++++|++..
T Consensus       513 ~~~~~~~l~~l~~L-~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          513 TSSSIEALSHLKGI-YLNLASNHIS-IILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CGGGGGGGTTCCSC-EEECCSSCCC-CCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             CcCChhHhCccccc-EEECcCCccc-ccCHhhcccCCCCCEEeCCCCCccc
Confidence            444433333 3344 5555555554 2333334445555555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.3e-45  Score=361.57  Aligned_cols=434  Identities=19%  Similarity=0.171  Sum_probs=350.9

Q ss_pred             hhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCC
Q 048657           10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL   89 (456)
Q Consensus        10 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~   89 (456)
                      .+|..+++   ++++|++++|.++.+++..|.++++|++|++++|.+.+..|.+|.++++|++|++++|.++ .++...+
T Consensus        26 ~iP~~l~~---~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~  101 (606)
T 3t6q_A           26 EIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETAL  101 (606)
T ss_dssp             SCCTTSCT---TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTT
T ss_pred             cCcCCCCC---cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhh
Confidence            45655555   7999999999999998889999999999999999999888999999999999999999998 5544489


Q ss_pred             cCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcC
Q 048657           90 VHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQ  169 (456)
Q Consensus        90 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~  169 (456)
                      .++++|++|++++|.+. ......+..+++|++|++++|.+.......   .....+|+.|+++.+.. ....+..+..+
T Consensus       102 ~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l-~~~~~~~~~~l  176 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPK---GFPTEKLKVLDFQNNAI-HYLSKEDMSSL  176 (606)
T ss_dssp             SSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCT---TCCCTTCCEEECCSSCC-CEECHHHHHTT
T ss_pred             cccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCccc---ccCCcccCEEEcccCcc-cccChhhhhhh
Confidence            99999999999999987 444567889999999999999987543222   22367899999965543 33346678888


Q ss_pred             CCcc--EEEecCcccccccchhhh------------------------------------------------hcc--ccc
Q 048657          170 HDLE--YVDLSHIKMNGEFPTWLL------------------------------------------------ENN--TKL  197 (456)
Q Consensus       170 ~~L~--~L~l~~~~~~~~~~~~~~------------------------------------------------~~~--~~L  197 (456)
                      ++|+  .+++++|.+.+..+..+.                                                .+.  ..+
T Consensus       177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L  256 (606)
T 3t6q_A          177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV  256 (606)
T ss_dssp             TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred             cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence            8888  888988877654433221                                                111  167


Q ss_pred             eeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccC
Q 048657          198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN  277 (456)
Q Consensus       198 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~  277 (456)
                      +.+++.++.+....+..++.+++|++|++++|.+. .+|..+.. +++|+.+++++|.+.+..+..+..+++|++|++++
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            88888888888877777899999999999999988 77776654 89999999999999877788899999999999999


Q ss_pred             CcCCCcccchhhcCCCcccEEEccCCcccccc--cccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc
Q 048657          278 NHLTGEIPEHLAVGCVNLESLALSNNNLEGHM--FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG  355 (456)
Q Consensus       278 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  355 (456)
                      |.+.+.++...+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            98877777766678999999999999998765  5667889999999999999987778888899999999999998876


Q ss_pred             ccCc-cccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCC---c-ccccccccEEEccCcccCCCCCc
Q 048657          356 RIPR-WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLP---A-CFHPLSIKQVHLSKNMLHGQLKR  430 (456)
Q Consensus       356 ~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~-~~~~~~L~~l~l~~~~~~~~~~~  430 (456)
                      ..+. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++...   . ...+++|++|++++|.+.+ ++.
T Consensus       415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~  493 (606)
T 3t6q_A          415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQ  493 (606)
T ss_dssp             CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECT
T ss_pred             cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cCh
Confidence            5543 47888899999999998887777888888888888888888875221   1 2236788888888888864 433


Q ss_pred             ccccCCCcceEEEccCcccCCCCCC
Q 048657          431 GTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       431 ~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      ..|..+++|+.|++++|++++..|+
T Consensus       494 ~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             hhhccccCCCEEECCCCccCcCChh
Confidence            4477788888888888888766553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.1e-45  Score=362.04  Aligned_cols=438  Identities=21%  Similarity=0.207  Sum_probs=307.9

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      .++|.+++..+..+++ +++|++|++++|.++.+++.+|.++++|++|++++|.+++..|.+|.++++|++|++++|.++
T Consensus        39 Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  117 (606)
T 3vq2_A           39 LSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA  117 (606)
T ss_dssp             CTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             CCCCCcCEeChhhccC-CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc
Confidence            4678888888888888 999999999999998888788999999999999999998777899999999999999999998


Q ss_pred             cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCC---------------------
Q 048657           82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSL---------------------  140 (456)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~---------------------  140 (456)
                       .++...+.++++|++|++++|.+.....+..+..+++|++|++++|.+.......+..                     
T Consensus       118 -~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~  196 (606)
T 3vq2_A          118 -SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI  196 (606)
T ss_dssp             -CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEE
T ss_pred             -cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCccee
Confidence             6665578999999999999998874344567888999999999999876543221111                     


Q ss_pred             ---CCCccccceeeccCCCCCCCCchHH----------------------------------------------------
Q 048657          141 ---IPPKFQLSRLSLSSGYEDGVTFPKF----------------------------------------------------  165 (456)
Q Consensus       141 ---~~~~~~L~~l~l~~~~~~~~~~~~~----------------------------------------------------  165 (456)
                         .....+|+.+++..+.......+..                                                    
T Consensus       197 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~  276 (606)
T 3vq2_A          197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD  276 (606)
T ss_dssp             CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG
T ss_pred             CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccc
Confidence               0111245556554433221112222                                                    


Q ss_pred             ----hhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhc
Q 048657          166 ----LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD  241 (456)
Q Consensus       166 ----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  241 (456)
                          +..+++|+.++++++.+. .++  .+..+++|++|++.+|.+ ..++ .+ .+++|+.|++++|...+..  .+ .
T Consensus       277 ~~~~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~-~  347 (606)
T 3vq2_A          277 DIVKFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KK-V  347 (606)
T ss_dssp             GGGSCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CC-C
T ss_pred             cccccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hh-c
Confidence                233344444444444442 222  123445555555555555 2222 23 5555666666555332222  11 1


Q ss_pred             cCCcceEEEccCCccCCC--ccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccc-cccccccc
Q 048657          242 VLPSLYVFNNSMNALDGS--IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF-SRNFNLAN  318 (456)
Q Consensus       242 ~~~~L~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~  318 (456)
                      .+++|+.++++.|.+.+.  .+..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhh-ccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            356777777777766543  2556677777777777777765 44432 3467788888888887776555 46667888


Q ss_pred             ccEEEccCccccccccccccCCCCCcEEEcCCCcCcc-ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCc
Q 048657          319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG-RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS  397 (456)
Q Consensus       319 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  397 (456)
                      |+.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus       426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence            8888888888876677778888888888888888876 367778888888888888888887777788888888888888


Q ss_pred             CCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCC-cceEEEccCcccCCCCC
Q 048657          398 DNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCS-SLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       398 ~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~p  454 (456)
                      +|++++..+..+. +++|+.|++++|.+. .+|.. +..++ +|+.|++++|++....|
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~-~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI-LQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC-GGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh-HhhhcccCcEEEccCCCcccCCc
Confidence            8888877665554 678888888888885 67776 77776 58888888888876544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.9e-43  Score=355.06  Aligned_cols=207  Identities=23%  Similarity=0.249  Sum_probs=127.0

Q ss_pred             ceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEcc
Q 048657          246 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLE  325 (456)
Q Consensus       246 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  325 (456)
                      |+.++++.|.+.+..+..+..+++|+.|++++|.+.+.++...+..+++|+++++++|.+.......+..+++|+.|++.
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            33334444444433444555566666666666655544444444455666666666666555444555556666666666


Q ss_pred             Ccccc--ccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCc--------hhccCCCCCCeEe
Q 048657          326 GNRFV--GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIP--------VEFCQLDSLQILD  395 (456)
Q Consensus       326 ~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~  395 (456)
                      +|.+.  +..|..+..+++|+.|++++|.+++..+..+.++++|++|++++|.+++...        ..+..+++|+.|+
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence            66553  2455666677777777777777765555667777777777777777664321        2256667777777


Q ss_pred             CcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCC
Q 048657          396 ISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI  453 (456)
Q Consensus       396 l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  453 (456)
                      +++|+++..+...+. +++|+.|++++|.+. .++...|.++++|+.|++++|.+++..
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            777777755544433 567777777777775 566666777777777777777776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3e-42  Score=347.67  Aligned_cols=445  Identities=21%  Similarity=0.194  Sum_probs=254.9

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG   82 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~   82 (456)
                      ++|.+++..+..+.+ +++|++|++++|.++.+.++.|.++++|++|++++|.++...+.+|.++++|++|++++|.++ 
T Consensus        33 s~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-  110 (680)
T 1ziw_A           33 THNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-  110 (680)
T ss_dssp             CSSCCCCCCGGGGGG-GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-
T ss_pred             CCCCCCCcCHHHHhC-CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-
Confidence            455666655555666 666666666666666665556666666666666666666444445666666666666666666 


Q ss_pred             ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCC---
Q 048657           83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG---  159 (456)
Q Consensus        83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---  159 (456)
                      .++...+.++++|++|++++|.+. ...+..+..+++|++|++++|.+.......+.. ....+|+.+++..+....   
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          111 KIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDI-FANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             CCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG-GTTCEESEEECTTCCCCCBCT
T ss_pred             ccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccccCHHHhhc-cccccccEEECCCCcccccCh
Confidence            454445666666666666666655 233344556666666666666554322111100 112344555543332111   


Q ss_pred             -----------------------------------------------CCchHHhhcC--CCccEEEecCcccccccchhh
Q 048657          160 -----------------------------------------------VTFPKFLYHQ--HDLEYVDLSHIKMNGEFPTWL  190 (456)
Q Consensus       160 -----------------------------------------------~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~  190 (456)
                                                                     ...+..+..+  ++|+.|++++|.+.+..+.. 
T Consensus       189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-  267 (680)
T 1ziw_A          189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-  267 (680)
T ss_dssp             TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-
T ss_pred             hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-
Confidence                                                           0111122222  12445555444443322222 


Q ss_pred             hhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCC-----CCc---hhhhccCCcceEEEccCCccCCCccc
Q 048657          191 LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRG-----HIP---VEIGDVLPSLYVFNNSMNALDGSIPS  262 (456)
Q Consensus       191 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~  262 (456)
                      +..+++|+.|++++|.+....+..+..+++|+.|+++++...+     .+|   ...+..+++|+.++++.|.+.+..+.
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  347 (680)
T 1ziw_A          268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN  347 (680)
T ss_dssp             TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred             ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence            2444555555555554444444444444444444444332211     011   11222356677777777777666566


Q ss_pred             cccCCCCCcEEeccCCcCCC-ccc--------------------------chhhcCCCcccEEEccCCcccccc-ccccc
Q 048657          263 SFGNMKFLQILDLSNNHLTG-EIP--------------------------EHLAVGCVNLESLALSNNNLEGHM-FSRNF  314 (456)
Q Consensus       263 ~l~~~~~L~~L~l~~~~l~~-~~~--------------------------~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~  314 (456)
                      .+..+++|++|++++|.+.. .++                          ...+..+++|++|++++|.+.+.. ...+.
T Consensus       348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  427 (680)
T 1ziw_A          348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR  427 (680)
T ss_dssp             TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred             HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence            66677777777776654221 111                          111223444444444444443222 13344


Q ss_pred             ccccccEEEccCccccccccccccCCCCCcEEEcCCCcCc--cccCccccCCCCCcEEEcCCCcccccCchhccCCCCCC
Q 048657          315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS--GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ  392 (456)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  392 (456)
                      .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.  +..|..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus       428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~  507 (680)
T 1ziw_A          428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE  507 (680)
T ss_dssp             TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccC
Confidence            4455555555555554444445555566666666666554  35677788888999999999998877777888899999


Q ss_pred             eEeCcCCccCCCCCc---------ccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657          393 ILDISDNNISGSLPA---------CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       393 ~L~l~~~~l~~~~~~---------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                      .|++++|++++....         ....++|+.|++++|.+. .++.+.|.++++|+.|++++|.++ .+|
T Consensus       508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~-~l~  576 (680)
T 1ziw_A          508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN-TLP  576 (680)
T ss_dssp             EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCC-cCC
Confidence            999999988764322         223678999999999986 788878999999999999999998 454

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.4e-43  Score=344.85  Aligned_cols=440  Identities=21%  Similarity=0.236  Sum_probs=325.9

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG   82 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~   82 (456)
                      ++|.+++..+..+++ +++|++|++++|.++.++++.|.++++|++|++++|.+++..+.+|.++++|++|++++|.++ 
T Consensus        36 s~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-  113 (570)
T 2z63_A           36 SFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-  113 (570)
T ss_dssp             CSCCCCEECTTTTTT-CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-
T ss_pred             cCCccCccChhHhhC-CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-
Confidence            567777777777888 888888888888888887777888888888888888887666778888888888888888887 


Q ss_pred             ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCC---------------------
Q 048657           83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLI---------------------  141 (456)
Q Consensus        83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~---------------------  141 (456)
                      .++...+.++++|++|++++|.+.....+..+..+++|+.|++++|.+.......+...                     
T Consensus       114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~  193 (570)
T 2z63_A          114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (570)
T ss_dssp             CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred             cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence            66655678888888888888877632345667788888888888887654322111100                     


Q ss_pred             ---CCccccceeeccCCCCCCCCchHHhhcCCCccEE--------------------------------EecCc-ccccc
Q 048657          142 ---PPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYV--------------------------------DLSHI-KMNGE  185 (456)
Q Consensus       142 ---~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L--------------------------------~l~~~-~~~~~  185 (456)
                         ....+++.+++.........++..+..+.+++..                                ++.++ .+.+.
T Consensus       194 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~  273 (570)
T 2z63_A          194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD  273 (570)
T ss_dssp             TTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESC
T ss_pred             HHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhh
Confidence               0011334444433222222222222223222222                                22221 12222


Q ss_pred             cchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCcccccc
Q 048657          186 FPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFG  265 (456)
Q Consensus       186 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~  265 (456)
                      .+. .+..+++|+.+++.++.+.. ++..+..+ +|+.|++++|.+. .+|..   .+++|+.+++.++...+..+.  .
T Consensus       274 ~~~-~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~  344 (570)
T 2z63_A          274 IID-LFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--V  344 (570)
T ss_dssp             STT-TTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--C
T ss_pred             chh-hhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--c
Confidence            222 23567788888888877663 45556666 8888888888876 55552   377889999988877654443  6


Q ss_pred             CCCCCcEEeccCCcCCCccc-chhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccc-ccccCCCCC
Q 048657          266 NMKFLQILDLSNNHLTGEIP-EHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIP-QSLSKCSSL  343 (456)
Q Consensus       266 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L  343 (456)
                      .+++|++|++++|.+.+... ...+..+++|++|++++|.+.+.... +..+++|+.|++++|.+.+..+ ..+.++++|
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            78999999999998873321 23345789999999999998876555 7889999999999999986554 468899999


Q ss_pred             cEEEcCCCcCccccCccccCCCCCcEEEcCCCccc-ccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccC
Q 048657          344 EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE-GLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSK  421 (456)
Q Consensus       344 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~  421 (456)
                      ++|++++|.+.+..+..+..+++|++|++++|.++ +..|..+..+++|+.|++++|++++..+..+. +++|++|++++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            99999999999888999999999999999999997 46778899999999999999999988676654 78999999999


Q ss_pred             cccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657          422 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       422 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      |.+. .++...|..+++|+.|++++|++++..|.
T Consensus       504 n~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          504 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             SCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CcCC-CCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9997 45666689999999999999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.4e-42  Score=343.82  Aligned_cols=415  Identities=20%  Similarity=0.159  Sum_probs=332.7

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      +++|.+++..|..+.+ +++|++|++++|.++.+.++.|.++++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus        63 Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  141 (606)
T 3vq2_A           63 LSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH  141 (606)
T ss_dssp             CTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred             CCCCcccccCHHHhhc-hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccc
Confidence            4678888888888888 999999999999988887788999999999999999998666678999999999999999987


Q ss_pred             c-ccCCCCCcCCCCccEEEcCCceeeeccCCCcccc---------------------------cccceEEeccCcccccc
Q 048657           82 G-SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFN---------------------------HSRLKFFYAENNQINAE  133 (456)
Q Consensus        82 ~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------------------~~~L~~l~l~~~~~~~~  133 (456)
                      + .+|. .+.++++|++|++++|.+.. ..+..+..                           ..+|+.+++++|.+...
T Consensus       142 ~~~lp~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~  219 (606)
T 3vq2_A          142 SCKLPA-YFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN  219 (606)
T ss_dssp             CCCCCG-GGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHH
T ss_pred             ceechH-hHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchh
Confidence            4 3454 78889999999999987763 22222222                           22566677766654210


Q ss_pred             ------------------------------------------------------cccCcCCCCCccccceeeccCCCCCC
Q 048657          134 ------------------------------------------------------ITQSHSLIPPKFQLSRLSLSSGYEDG  159 (456)
Q Consensus       134 ------------------------------------------------------~~~~~~~~~~~~~L~~l~l~~~~~~~  159 (456)
                                                                            ............+++.+++...... 
T Consensus       220 ~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-  298 (606)
T 3vq2_A          220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-  298 (606)
T ss_dssp             HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-
T ss_pred             HHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-
Confidence                                                                  0000011223456777777655443 


Q ss_pred             CCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCC--Cch
Q 048657          160 VTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGH--IPV  237 (456)
Q Consensus       160 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~  237 (456)
                       .++ .+..+++|+.|++++|.+ +.++..   .+++|++|++.+|......  .+..+++|+.|++++|.+.+.  .+.
T Consensus       299 -~l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~  370 (606)
T 3vq2_A          299 -YLE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSY  370 (606)
T ss_dssp             -CCC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCH
T ss_pred             -hhh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhh
Confidence             233 677889999999999998 577743   8999999999999655433  567899999999999988743  244


Q ss_pred             hhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccc
Q 048657          238 EIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLA  317 (456)
Q Consensus       238 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  317 (456)
                      .+. .+++|+.++++.|.+.+ ++..+..+++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..++
T Consensus       371 ~~~-~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  448 (606)
T 3vq2_A          371 SDL-GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT  448 (606)
T ss_dssp             HHH-CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             hhc-cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence            444 48999999999998774 5678899999999999999988555535556899999999999999988888888999


Q ss_pred             cccEEEccCccccc-cccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeC
Q 048657          318 NLKLLQLEGNRFVG-EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI  396 (456)
Q Consensus       318 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  396 (456)
                      +|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus       449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            99999999999986 36888999999999999999999888899999999999999999999888999999999999999


Q ss_pred             cCCccCCCCCcccccc-cccEEEccCcccCCCCCc
Q 048657          397 SDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKR  430 (456)
Q Consensus       397 ~~~~l~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~  430 (456)
                      ++|+++..+......+ +|+++++++|++....+.
T Consensus       529 ~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          529 SFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999997666544454 699999999999755544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-42  Score=354.79  Aligned_cols=439  Identities=21%  Similarity=0.173  Sum_probs=233.8

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCC-CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      ++|.+++..+..+.+ +++|++|+|++|. ...+++.+|.++++|++|+|++|.+.+..|.+|.++++|++|++++|.++
T Consensus        32 s~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~  110 (844)
T 3j0a_A           32 SFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS  110 (844)
T ss_dssp             ESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCS
T ss_pred             CCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCC
Confidence            577888888888888 9999999998885 66676678888999999999999888777888888999999999999888


Q ss_pred             cccCC-CCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCC
Q 048657           82 GSISS-SPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGV  160 (456)
Q Consensus        82 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  160 (456)
                      +.++. ..+.++++|++|++++|.+........+..+++|+.|++++|.+.......+.... ..+|+.+++..+.... 
T Consensus       111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~-~~~L~~L~L~~n~l~~-  188 (844)
T 3j0a_A          111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ-GKTLSFFSLAANSLYS-  188 (844)
T ss_dssp             SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH-HCSSCCCEECCSBSCC-
T ss_pred             cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc-CCccceEECCCCcccc-
Confidence            54443 34788899999999988887444445678888999999988877543322211110 0234444442222111 


Q ss_pred             CchHHhhcCC------CccEEEecCcccccccchhhhh-----------------------------------c--cccc
Q 048657          161 TFPKFLYHQH------DLEYVDLSHIKMNGEFPTWLLE-----------------------------------N--NTKL  197 (456)
Q Consensus       161 ~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~-----------------------------------~--~~~L  197 (456)
                      ..+..+..+.      .|+.|++++|.+....+..+..                                   +  .+++
T Consensus       189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L  268 (844)
T 3j0a_A          189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV  268 (844)
T ss_dssp             CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred             ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCc
Confidence            1111111111      1444444444332222111110                                   0  1345


Q ss_pred             eeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccC
Q 048657          198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN  277 (456)
Q Consensus       198 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~  277 (456)
                      +.|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+++.|.+.+..+..+..+++|+.|++++
T Consensus       269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  347 (844)
T 3j0a_A          269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK  347 (844)
T ss_dssp             CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred             cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence            555555555444444444555555555555555442222222 2244555555555555444444455555555555555


Q ss_pred             CcCCCcccchhhcCCCcccEEEccCCccccccc----------------------------------------ccccccc
Q 048657          278 NHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF----------------------------------------SRNFNLA  317 (456)
Q Consensus       278 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------------------------------------~~~~~~~  317 (456)
                      |.+. .++...+..+++|++|++++|.+.....                                        ..+..++
T Consensus       348 N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~  426 (844)
T 3j0a_A          348 NHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP  426 (844)
T ss_dssp             CCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred             CCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence            5444 3333333344555555555544432110                                        0011334


Q ss_pred             cccEEEccCcccccccc-ccccCCCCCcEEEcCCCcCc-----cccCccccCCCCCcEEEcCCCcccccCchhccCCCCC
Q 048657          318 NLKLLQLEGNRFVGEIP-QSLSKCSSLEGLHLNNNSLS-----GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL  391 (456)
Q Consensus       318 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  391 (456)
                      +|+.|++++|.+.+..+ ..+..+++|+.|++++|.++     +..+..|..+++|+.|++++|.+++.++..+..+++|
T Consensus       427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  506 (844)
T 3j0a_A          427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL  506 (844)
T ss_dssp             TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred             ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence            44444444444432111 11233444444444444443     1222334455555555555555555555555555555


Q ss_pred             CeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657          392 QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  451 (456)
Q Consensus       392 ~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  451 (456)
                      +.|++++|++++.++..+. ++|+.|++++|.+.+..+..    +++|+.|++++|++..
T Consensus       507 ~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~----~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          507 RGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDV----FVSLSVLDITHNKFIC  561 (844)
T ss_dssp             SEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCC----CSSCCEEEEEEECCCC
T ss_pred             heeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhH----hCCcCEEEecCCCccc
Confidence            5555555555544443333 45555555555554333322    2345555555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5e-41  Score=330.47  Aligned_cols=434  Identities=20%  Similarity=0.209  Sum_probs=279.5

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG   82 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~   82 (456)
                      ++|.+++..+..+.+ +++|++|++++|.++.+++++|.++++|++|++++|.+++..+..+.++++|++|++++|.+++
T Consensus        34 s~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           34 SFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             CSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred             cCCccCccChhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence            456666666666666 7777777777777666665666677777777777777665555666677777777777776662


Q ss_pred             -ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCC
Q 048657           83 -SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT  161 (456)
Q Consensus        83 -~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  161 (456)
                       .++. .+.++++|++|++++|.+....+...+..+++|++|++++|.+.......   +....+|+.+++.....  ..
T Consensus       113 ~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n~~--~~  186 (549)
T 2z81_A          113 LGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS---LKSIRDIHHLTLHLSES--AF  186 (549)
T ss_dssp             SCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT---TTTCSEEEEEEEECSBS--TT
T ss_pred             cchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh---hhccccCceEecccCcc--cc
Confidence             1222 56666777777777666333444455666677777777766665433222   23344666666644332  12


Q ss_pred             chHHh-hcCCCccEEEecCccccccc--chhhhhccccceeeeecccCcCCCC----CcCccCCccccEEeCCCCccCCC
Q 048657          162 FPKFL-YHQHDLEYVDLSHIKMNGEF--PTWLLENNTKLIQLSVVNDSLAGPF----RLPIHSHKQLRLLDISTNNFRGH  234 (456)
Q Consensus       162 ~~~~l-~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~  234 (456)
                      ++..+ ..+++|+.|++++|.+.+..  +......++.|+.+++.++.+....    ...+..+++|+.+++.+|.+.+.
T Consensus       187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~  266 (549)
T 2z81_A          187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL  266 (549)
T ss_dssp             HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred             cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence            33332 34667777777776655321  2222345566777766665443211    11122334444444444433210


Q ss_pred             C--------------------------c--------hhhhccCCcceEEEccCCccCCCccccc-cCCCCCcEEeccCCc
Q 048657          235 I--------------------------P--------VEIGDVLPSLYVFNNSMNALDGSIPSSF-GNMKFLQILDLSNNH  279 (456)
Q Consensus       235 ~--------------------------~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~  279 (456)
                      .                          +        .......++++.++++++.+. .+|..+ ..+++|++|++++|.
T Consensus       267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~  345 (549)
T 2z81_A          267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENL  345 (549)
T ss_dssp             SCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSC
T ss_pred             ccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCc
Confidence            0                          0        001122456777777777765 455554 468888888888888


Q ss_pred             CCCcccch--hhcCCCcccEEEccCCccccccc--ccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc
Q 048657          280 LTGEIPEH--LAVGCVNLESLALSNNNLEGHMF--SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG  355 (456)
Q Consensus       280 l~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  355 (456)
                      +.+.++..  ....+++|++|++++|.+++...  ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ 
T Consensus       346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-  423 (549)
T 2z81_A          346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-  423 (549)
T ss_dssp             CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-
Confidence            77544322  23467888888888888876432  34667888888888888887 67777788888888888888876 


Q ss_pred             ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccC
Q 048657          356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFN  435 (456)
Q Consensus       356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  435 (456)
                      .++..+  .++|+.|++++|.+++.+    ..+++|+.|++++|+++.. +.....++|++|++++|.+.+ ++.+.|..
T Consensus       424 ~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i-p~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~  495 (549)
T 2z81_A          424 VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PDASLFPVLLVMKISRNQLKS-VPDGIFDR  495 (549)
T ss_dssp             CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CCGGGCTTCCEEECCSSCCCC-CCTTGGGG
T ss_pred             cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcC-CCcccCccCCEEecCCCccCC-cCHHHHhc
Confidence            344333  257888888888887543    4788999999999999854 444557899999999999975 55555889


Q ss_pred             CCcceEEEccCcccCCCCC
Q 048657          436 CSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       436 ~~~L~~L~l~~~~l~~~~p  454 (456)
                      +++|+.|++++|++++..|
T Consensus       496 l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          496 LTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CTTCCEEECCSSCBCCCHH
T ss_pred             CcccCEEEecCCCccCCCc
Confidence            9999999999999988765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=332.44  Aligned_cols=429  Identities=19%  Similarity=0.176  Sum_probs=310.0

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      +++|.++ .+|..++   ++|++|++++|.++.+++..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++
T Consensus         7 ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B            7 RSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             CTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             cCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            4678887 4776555   68999999999998888778999999999999999999788899999999999999999998


Q ss_pred             cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCcccc--ceeeccCCCCC-
Q 048657           82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQL--SRLSLSSGYED-  158 (456)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~~-  158 (456)
                       .++..   .+++|++|++++|.+.....+..+..+++|++|++++|.+....      +....++  +.+++..+... 
T Consensus        83 -~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           83 -KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS------VLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             -EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG------GGGGTTSCEEEEEEEECTTTT
T ss_pred             -ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh------ccccccceeeEEEeecccccc
Confidence             78873   78999999999999874334567889999999999999886521      1223344  88888554331 


Q ss_pred             CCCchHHhhcCC-CccEEEecCcccccccchhhhhccccceeeeecccC-------cCCCCCcCccCC------------
Q 048657          159 GVTFPKFLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDS-------LAGPFRLPIHSH------------  218 (456)
Q Consensus       159 ~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~------------  218 (456)
                      ....+..+..+. ....++++++.+.+..+...+..++.|+.+++..|.       +.+..+ .+..+            
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            223334443332 122334444444444444444455555555555543       111111 22223            


Q ss_pred             ---------------ccccEEeCCCCccCCCCchhhh----ccCCcceEEEccCCccCCCcc-ccccCC---CCCcEEec
Q 048657          219 ---------------KQLRLLDISTNNFRGHIPVEIG----DVLPSLYVFNNSMNALDGSIP-SSFGNM---KFLQILDL  275 (456)
Q Consensus       219 ---------------~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~~~~~-~~l~~~---~~L~~L~l  275 (456)
                                     ++|+.|++++|.+.+.+|..++    ..++.|+.++++.+.+  .+| ..+..+   ++|+.|++
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence                           3566666666666555555542    2356666666666655  233 222222   45777777


Q ss_pred             cCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccc--cccccccCCCCCcEEEcCCCcC
Q 048657          276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG--EIPQSLSKCSSLEGLHLNNNSL  353 (456)
Q Consensus       276 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~  353 (456)
                      +++.+. ..+.  ...+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+  ..|..+..+++|++|++++|.+
T Consensus       310 ~~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l  386 (520)
T 2z7x_B          310 SGTRMV-HMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV  386 (520)
T ss_dssp             ESSCCC-CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred             CCCccc-cccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence            777665 2221  1468899999999999988777788889999999999999985  4556788999999999999999


Q ss_pred             ccccCc-cccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCccc
Q 048657          354 SGRIPR-WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGT  432 (456)
Q Consensus       354 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  432 (456)
                      ++.+|. .+..+++|++|++++|.+++..+..+.  ++|+.|++++|+++..+......++|++|++++|++. .++...
T Consensus       387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~  463 (520)
T 2z7x_B          387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGI  463 (520)
T ss_dssp             BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTT
T ss_pred             CcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHH
Confidence            864554 478899999999999999766665543  6999999999999966655667889999999999996 677777


Q ss_pred             ccCCCcceEEEccCcccCCCC
Q 048657          433 FFNCSSLVTLDLSYNRLNGSI  453 (456)
Q Consensus       433 ~~~~~~L~~L~l~~~~l~~~~  453 (456)
                      |..+++|+.|++++|+++.+.
T Consensus       464 ~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          464 FDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             TTTCTTCCEEECCSSCBCCCH
T ss_pred             hccCCcccEEECcCCCCcccC
Confidence            889999999999999998764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=326.97  Aligned_cols=417  Identities=20%  Similarity=0.197  Sum_probs=329.6

Q ss_pred             CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEE
Q 048657           20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM   99 (456)
Q Consensus        20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~   99 (456)
                      +++++|++++|.++.++..+|.++++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccc
Confidence            37999999999999998889999999999999999999777889999999999999999998 66666899999999999


Q ss_pred             cCCceeeeccCCCcccccccceEEeccCccccccc-ccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCc----cE
Q 048657          100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEI-TQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDL----EY  174 (456)
Q Consensus       100 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L----~~  174 (456)
                      +++|.+. ..+...+..+++|++|++++|.+.... +.   .+..+.+|+.|++..+... ...+..+..+++|    +.
T Consensus       107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~---~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCE
T ss_pred             ccccccc-cCCCccccccccccEEecCCCccceecChh---hhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhh
Confidence            9999887 344446889999999999999876421 22   2344568999999655432 2234455666666    78


Q ss_pred             EEecCcccccccchhhhhccccceeeeeccc-------------------------------------------------
Q 048657          175 VDLSHIKMNGEFPTWLLENNTKLIQLSVVND-------------------------------------------------  205 (456)
Q Consensus       175 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------------------------------------  205 (456)
                      ++++++.+....+..+ ... +|+++++.++                                                 
T Consensus       182 L~l~~n~l~~~~~~~~-~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l  259 (570)
T 2z63_A          182 LDLSLNPMNFIQPGAF-KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI  259 (570)
T ss_dssp             EECTTCCCCEECTTTT-TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred             cccCCCCceecCHHHh-ccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence            8888887765444332 222 5666665554                                                 


Q ss_pred             ---------CcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEecc
Q 048657          206 ---------SLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS  276 (456)
Q Consensus       206 ---------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  276 (456)
                               .+....+..+..+++|+.++++++.+. .+|..+.. + +|+.++++.|.+. .+|.  ..+++|+.|+++
T Consensus       260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~  333 (570)
T 2z63_A          260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT  333 (570)
T ss_dssp             EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE
T ss_pred             hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc--ccccccCEEeCc
Confidence                     222333455667788999999988887 56666554 4 8999999988877 4444  478889999999


Q ss_pred             CCcCCCcccchhhcCCCcccEEEccCCcccccc--cccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCc
Q 048657          277 NNHLTGEIPEHLAVGCVNLESLALSNNNLEGHM--FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS  354 (456)
Q Consensus       277 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  354 (456)
                      ++.+.+..+.   ..+++|++|++++|.+....  +..+..+++|+.|++++|.+.+ .+..+..+++|++|++++|.+.
T Consensus       334 ~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~  409 (570)
T 2z63_A          334 SNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK  409 (570)
T ss_dssp             SCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEE
T ss_pred             CCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccc
Confidence            9887644443   46899999999999987654  4567789999999999999984 4445899999999999999988


Q ss_pred             cccC-ccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC-CCCCccc-ccccccEEEccCcccCCCCCcc
Q 048657          355 GRIP-RWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS-GSLPACF-HPLSIKQVHLSKNMLHGQLKRG  431 (456)
Q Consensus       355 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~  431 (456)
                      +..+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ +..+..+ .+++|++|++++|.+.+..+. 
T Consensus       410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-  488 (570)
T 2z63_A          410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-  488 (570)
T ss_dssp             SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-
T ss_pred             cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-
Confidence            6655 57889999999999999999888899999999999999999987 3344444 478999999999999754444 


Q ss_pred             cccCCCcceEEEccCcccCCCCCC
Q 048657          432 TFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       432 ~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      .|..+++|+.|++++|++++..|.
T Consensus       489 ~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          489 AFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             hhhcccCCCEEeCCCCcCCCCCHH
Confidence            489999999999999999976653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.6e-41  Score=333.14  Aligned_cols=409  Identities=17%  Similarity=0.199  Sum_probs=305.6

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcc-------------c--------------------ccc--------
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRIL-------------D--------------------RGL--------   40 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-------------~--------------------~~l--------   40 (456)
                      .+++.+.|.+|.++++ +++|++|+|++|.+...+             .                    ..+        
T Consensus        88 L~~~~l~g~lp~~l~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~  166 (636)
T 4eco_A           88 LEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI  166 (636)
T ss_dssp             CTTSCCEEEECGGGGG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             ecCcccCCcCChHHhc-CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence            3578888889988888 999999999888531000             0                    000        


Q ss_pred             -----------cCCCCCcEEEcc--cCcccccchhhhhcCCCCcEEeccCCccccc-----------------cCCCCCc
Q 048657           41 -----------CSLVHLQELYID--NNDLRGSLPWCLANMTSLRILDVSSNQLTGS-----------------ISSSPLV   90 (456)
Q Consensus        41 -----------~~l~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-----------------~~~~~~~   90 (456)
                                 .....++.+.+.  +|.+++ .|..+.++++|++|++++|.+++.                 +|. .+.
T Consensus       167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~  244 (636)
T 4eco_A          167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLK  244 (636)
T ss_dssp             HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCC
T ss_pred             hcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhh
Confidence                       001112222221  356665 778888888888888888888853                 776 677


Q ss_pred             --CCCCccEEEcCCceeeeccCCCcccccccceEEeccCcc-ccc-ccccCcCC---CCCccccceeeccCCCCCCCCch
Q 048657           91 --HLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQ-INA-EITQSHSL---IPPKFQLSRLSLSSGYEDGVTFP  163 (456)
Q Consensus        91 --~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~  163 (456)
                        ++++|++|++++|.+.+ ..+..+..+++|+.|++++|. +.+ ..+..+..   .....+|+.|++..+...  .+|
T Consensus       245 ~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip  321 (636)
T 4eco_A          245 WDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFP  321 (636)
T ss_dssp             GGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCC
T ss_pred             hcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccC
Confidence              88888888888888764 334677888888888888887 654 22222111   122357788888655444  566


Q ss_pred             H--HhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCcc-ccEEeCCCCccCCCCchhhh
Q 048657          164 K--FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQ-LRLLDISTNNFRGHIPVEIG  240 (456)
Q Consensus       164 ~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~  240 (456)
                      .  .+..+++|+.|++++|.+.+.++  .+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.+. .+|..+.
T Consensus       322 ~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~  397 (636)
T 4eco_A          322 VETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD  397 (636)
T ss_dssp             CHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred             chhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence            6  78889999999999998877777  4578889999999998887 56666888888 999999999888 6776544


Q ss_pred             cc-CCcceEEEccCCccCCCcccccc-------CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccc
Q 048657          241 DV-LPSLYVFNNSMNALDGSIPSSFG-------NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSR  312 (456)
Q Consensus       241 ~~-~~~L~~l~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  312 (456)
                      .. +++|+.++++.|.+.+..|..+.       .+++|++|++++|.+. .++...+..+++|++|++++|.+.......
T Consensus       398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~  476 (636)
T 4eco_A          398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNS  476 (636)
T ss_dssp             TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred             hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence            31 34899999999998887777777       7788999999999888 788777767889999999999888544433


Q ss_pred             cccc-------ccccEEEccCcccccccccccc--CCCCCcEEEcCCCcCccccCccccCCCCCcEEEc------CCCcc
Q 048657          313 NFNL-------ANLKLLQLEGNRFVGEIPQSLS--KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM------PNNHL  377 (456)
Q Consensus       313 ~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~  377 (456)
                      +...       ++|+.|++++|.++ .+|..+.  .+++|++|++++|.+++ +|..+..+++|++|++      ++|.+
T Consensus       477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             SEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred             hccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence            3322       38999999999988 6777776  88999999999999885 7888889999999999      45677


Q ss_pred             cccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657          378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       378 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~  425 (456)
                      .+..|..+..+++|+.|++++|++... +..+. ++|+.|++++|++.
T Consensus       555 ~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~-~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          555 LREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT-PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC-TTCCEEECCSCTTC
T ss_pred             cccChHHHhcCCCCCEEECCCCcCCcc-CHhHh-CcCCEEECcCCCCc
Confidence            778888888899999999999998544 44333 78999999999775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.7e-40  Score=336.67  Aligned_cols=419  Identities=21%  Similarity=0.210  Sum_probs=268.4

Q ss_pred             ccccccchh-hhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhh--hhcCCCCcEEeccCCc
Q 048657            3 TRIALNTSF-LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWC--LANMTSLRILDVSSNQ   79 (456)
Q Consensus         3 ~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~   79 (456)
                      ++|.+.+.+ |..+.+ +++|++|+|++|.++.+.++.|.++++|++|++++|.+.+..+..  +.++++|++|++++|.
T Consensus        56 s~n~~~~~i~~~~f~~-L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A           56 GSQYTPLTIDKEAFRN-LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             CTTCCCCEECTTTTSS-CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred             CCCCCccccCHHHhcC-CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence            455555666 667777 999999999999998887789999999999999999998655554  8899999999999999


Q ss_pred             cccccCCCCCcCCCCccEEEcCCceeeeccCCCccccc--ccceEEeccCcccccccccCcCCCC---CccccceeeccC
Q 048657           80 LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNH--SRLKFFYAENNQINAEITQSHSLIP---PKFQLSRLSLSS  154 (456)
Q Consensus        80 i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~~~~---~~~~L~~l~l~~  154 (456)
                      +++..+...+.++++|++|++++|.+.. .....+..+  ++|+.+++++|.+.......+....   ....|+.+++..
T Consensus       135 l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~  213 (844)
T 3j0a_A          135 IRSLYLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG  213 (844)
T ss_dssp             CCCCCCCGGGGTCSSCCEEEEESSCCCC-CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred             ccccccchhHhhCCCCCEEECCCCcCCe-eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCC
Confidence            9844443468899999999999998762 233334333  5666666666555433222111110   011244444433


Q ss_pred             CCCCCC---Cc--------------------------------hHHhhc--CCCccEEEecCcccccccchhhhhccccc
Q 048657          155 GYEDGV---TF--------------------------------PKFLYH--QHDLEYVDLSHIKMNGEFPTWLLENNTKL  197 (456)
Q Consensus       155 ~~~~~~---~~--------------------------------~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  197 (456)
                      +.....   .+                                ...+..  .++++.|++++|.+.+..+. .+..+++|
T Consensus       214 n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L  292 (844)
T 3j0a_A          214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDL  292 (844)
T ss_dssp             CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCC
T ss_pred             CcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCC
Confidence            211000   00                                000000  13445555554444322222 12344445


Q ss_pred             eeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccC
Q 048657          198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN  277 (456)
Q Consensus       198 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~  277 (456)
                      +.|++++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.++++.|.+....+..+..+++|+.|++++
T Consensus       293 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY-GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS-SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred             CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc-CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence            5555554444444444444444455555544444422222222 244444444444444433333344444444444444


Q ss_pred             CcCCC------------------cccc---------------------hhhcCCCcccEEEccCCcccccccc-cccccc
Q 048657          278 NHLTG------------------EIPE---------------------HLAVGCVNLESLALSNNNLEGHMFS-RNFNLA  317 (456)
Q Consensus       278 ~~l~~------------------~~~~---------------------~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~  317 (456)
                      |.+.+                  .++.                     .....+++|++|++++|.+...... .+..++
T Consensus       372 N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  451 (844)
T 3j0a_A          372 NALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP  451 (844)
T ss_dssp             CCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred             CCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence            43321                  1111                     1123678999999999998754332 345689


Q ss_pred             cccEEEccCccccc-----cccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCC
Q 048657          318 NLKLLQLEGNRFVG-----EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ  392 (456)
Q Consensus       318 ~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  392 (456)
                      +|+.|++++|.+..     ..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++.++..+.  ++|+
T Consensus       452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~  529 (844)
T 3j0a_A          452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE  529 (844)
T ss_dssp             TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred             ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cccc
Confidence            99999999999863     3345678899999999999999988888899999999999999999987776665  7999


Q ss_pred             eEeCcCCccCCCCCcccccccccEEEccCcccCCCCC
Q 048657          393 ILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLK  429 (456)
Q Consensus       393 ~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~  429 (456)
                      .|++++|++++..+..+  .+++.+++++|++....+
T Consensus       530 ~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          530 ILDISRNQLLAPNPDVF--VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEEEEEECCCCCCSCCC--SSCCEEEEEEECCCCSSS
T ss_pred             EEECCCCcCCCCChhHh--CCcCEEEecCCCcccccc
Confidence            99999999998887664  489999999999865443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.6e-40  Score=331.64  Aligned_cols=408  Identities=17%  Similarity=0.187  Sum_probs=282.4

Q ss_pred             CccccccchhhhHHhhcCCCccEEec-cCCCCCCc-ccc-----------------------------------------
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSL-SDSNSSRI-LDR-----------------------------------------   38 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~-~~~-----------------------------------------   38 (456)
                      ++++.+.|.+|+++++ +++|++|+| ++|.+... +..                                         
T Consensus       330 Ls~~~L~G~ip~~l~~-L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l  408 (876)
T 4ecn_A          330 LAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI  408 (876)
T ss_dssp             CTTTCCEEEECGGGGG-CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             CccCCCCCcCchHHhc-cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence            3578888889988888 999999999 55532111 000                                         


Q ss_pred             -------cc--cCCCCCcEEEccc--CcccccchhhhhcCCCCcEEeccCCcccc-----------------ccCCCCCc
Q 048657           39 -------GL--CSLVHLQELYIDN--NDLRGSLPWCLANMTSLRILDVSSNQLTG-----------------SISSSPLV   90 (456)
Q Consensus        39 -------~l--~~l~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-----------------~~~~~~~~   90 (456)
                             .+  .....++.+.+..  |.+++ +|..+.++++|++|++++|.+++                 .+|. .+.
T Consensus       409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~  486 (876)
T 4ecn_A          409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELS  486 (876)
T ss_dssp             HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCC
T ss_pred             hhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhh
Confidence                   00  1112233333332  56664 78889999999999999999885                 2776 555


Q ss_pred             --CCCCccEEEcCCceeeeccCCCcccccccceEEeccCcc-ccc-ccccCcC----CCCCccccceeeccCCCCCCCCc
Q 048657           91 --HLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQ-INA-EITQSHS----LIPPKFQLSRLSLSSGYEDGVTF  162 (456)
Q Consensus        91 --~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~  162 (456)
                        ++++|++|++++|.+.+.. +..+..+++|+.|++++|. +.. ..+..+.    ......+|+.|++..+...  .+
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~i  563 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EF  563 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BC
T ss_pred             hccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--cc
Confidence              8999999999998876433 4678889999999999987 654 2222111    2233446777777555444  56


Q ss_pred             hH--HhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCcc-ccEEeCCCCccCCCCchhh
Q 048657          163 PK--FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQ-LRLLDISTNNFRGHIPVEI  239 (456)
Q Consensus       163 ~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~  239 (456)
                      |.  .+..+++|+.|++++|.+. .++  .+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.+. .+|..+
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~  638 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF  638 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred             CChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence            65  7778888888888888776 555  3567788888888888777 56666777777 888888888877 666544


Q ss_pred             hcc-CCcceEEEccCCccCCCcccc---cc--CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccc
Q 048657          240 GDV-LPSLYVFNNSMNALDGSIPSS---FG--NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN  313 (456)
Q Consensus       240 ~~~-~~~L~~l~l~~~~~~~~~~~~---l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  313 (456)
                      ... .++|+.++++.|.+.+.+|..   +.  .+++|+.|++++|.+. .+|...+..+++|+.|++++|.+.......+
T Consensus       639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  717 (876)
T 4ecn_A          639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSL  717 (876)
T ss_dssp             CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSS
T ss_pred             hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHh
Confidence            321 234888888888776544322   22  3447888888888877 7777666677888888888887774433333


Q ss_pred             c-------ccccccEEEccCcccccccccccc--CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCC------Cccc
Q 048657          314 F-------NLANLKLLQLEGNRFVGEIPQSLS--KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN------NHLE  378 (456)
Q Consensus       314 ~-------~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~  378 (456)
                      .       ++++|+.|++++|.+. .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++++      |.+.
T Consensus       718 ~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~  795 (876)
T 4ecn_A          718 KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL  795 (876)
T ss_dssp             SCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred             ccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence            2       2237888888888887 6666665  78888888888888874 677777888888888865      6666


Q ss_pred             ccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657          379 GLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       379 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~  425 (456)
                      +.+|..+..+++|+.|++++|++. ..|..+ .++|+.|++++|++.
T Consensus       796 ~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l-~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKL-TPQLYILDIADNPNI  840 (876)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSCCC-BCCSCC-CSSSCEEECCSCTTC
T ss_pred             ccChHHHhcCCCCCEEECCCCCCC-ccCHhh-cCCCCEEECCCCCCC
Confidence            677777888888888888888884 344433 257888888888775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.8e-39  Score=319.16  Aligned_cols=357  Identities=19%  Similarity=0.240  Sum_probs=291.3

Q ss_pred             CCccccccCCCCCcCCCCccEEEcCCceeeec----------------cCCCccc--ccccceEEeccCcccccccccCc
Q 048657           77 SNQLTGSISSSPLVHLTSIEELMLSNNHFQIP----------------ISLEPFF--NHSRLKFFYAENNQINAEITQSH  138 (456)
Q Consensus        77 ~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~  138 (456)
                      .|.+++ +|. .+.++++|++|++++|.+.+.                ..+..+.  .+++|++|++++|.+....+.  
T Consensus       192 ~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--  267 (636)
T 4eco_A          192 SNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT--  267 (636)
T ss_dssp             SCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT--
T ss_pred             cCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH--
Confidence            356774 776 799999999999999998742                0456677  999999999999988765543  


Q ss_pred             CCCCCccccceeeccCCCCCCC-CchHHhhcC------CCccEEEecCcccccccch-hhhhccccceeeeecccCcCCC
Q 048657          139 SLIPPKFQLSRLSLSSGYEDGV-TFPKFLYHQ------HDLEYVDLSHIKMNGEFPT-WLLENNTKLIQLSVVNDSLAGP  210 (456)
Q Consensus       139 ~~~~~~~~L~~l~l~~~~~~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~  210 (456)
                       .+....+|+.|++..+....+ .+|..+..+      ++|+.|++++|.+. .++. ..+..+++|+.|++++|.+.+.
T Consensus       268 -~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~  345 (636)
T 4eco_A          268 -FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK  345 (636)
T ss_dssp             -TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred             -HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence             345566999999976653444 678888776      99999999999988 6666 2457899999999999999866


Q ss_pred             CCcCccCCccccEEeCCCCccCCCCchhhhccCCc-ceEEEccCCccCCCccccccCCC--CCcEEeccCCcCCCcccch
Q 048657          211 FRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPS-LYVFNNSMNALDGSIPSSFGNMK--FLQILDLSNNHLTGEIPEH  287 (456)
Q Consensus       211 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~  287 (456)
                      ++ .+..+++|+.|++++|.+. .+|..+.. +++ |+.+++++|.+. .+|..+...+  +|+.|++++|.+.+..|..
T Consensus       346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  421 (636)
T 4eco_A          346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN  421 (636)
T ss_dssp             CC-CCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred             hh-hhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence            66 8889999999999999988 77877665 677 999999999988 6787776654  8999999999998665544


Q ss_pred             hh------cCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccc-ccC-------CCCCcEEEcCCCcC
Q 048657          288 LA------VGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQS-LSK-------CSSLEGLHLNNNSL  353 (456)
Q Consensus       288 ~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~-------l~~L~~L~l~~~~~  353 (456)
                      +.      ..+++|++|++++|.+.......+..+++|+.|++++|.+. .+|.. +..       +++|++|++++|.+
T Consensus       422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  500 (636)
T 4eco_A          422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL  500 (636)
T ss_dssp             SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred             hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcC
Confidence            32      04678999999999998766555667899999999999998 55443 332       23999999999999


Q ss_pred             ccccCcccc--CCCCCcEEEcCCCcccccCchhccCCCCCCeEeC------cCCccCCCCCcccc-cccccEEEccCccc
Q 048657          354 SGRIPRWLG--NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI------SDNNISGSLPACFH-PLSIKQVHLSKNML  424 (456)
Q Consensus       354 ~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~l~~~~~~~~~-~~~L~~l~l~~~~~  424 (456)
                      + .+|..+.  .+++|++|++++|.+++ +|..+..+++|+.|++      ++|++.+..+..+. +++|++|++++|.+
T Consensus       501 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          501 T-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             C-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             C-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            8 7888886  89999999999999997 6788889999999999      45777777776554 78999999999999


Q ss_pred             CCCCCcccccCCCcceEEEccCcccC
Q 048657          425 HGQLKRGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       425 ~~~~~~~~~~~~~~L~~L~l~~~~l~  450 (456)
                       +.+|.. +.  ++|+.|++++|++.
T Consensus       579 -~~ip~~-~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          579 -RKVNEK-IT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             -CBCCSC-CC--TTCCEEECCSCTTC
T ss_pred             -CccCHh-Hh--CcCCEEECcCCCCc
Confidence             688887 33  89999999999876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.8e-38  Score=300.86  Aligned_cols=386  Identities=19%  Similarity=0.191  Sum_probs=243.3

Q ss_pred             cEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCC
Q 048657           23 KYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN  102 (456)
Q Consensus        23 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~  102 (456)
                      +.++.+++.++.++.  +.  ++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus        13 ~~~~c~~~~l~~lp~--l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSSCCC--CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcccCCC--CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            345666666666663  22  56777777777777666677777777777777777766556555677777777777777


Q ss_pred             ceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCccc
Q 048657          103 NHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKM  182 (456)
Q Consensus       103 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  182 (456)
                      |.+. ...+..+..+++|++|++++|.+......                          ...+..+++|+.|++++|.+
T Consensus        89 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------~~~~~~l~~L~~L~L~~n~l  141 (455)
T 3v47_A           89 NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLS--------------------------GNFFKPLTSLEMLVLRDNNI  141 (455)
T ss_dssp             CTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHH--------------------------SSTTTTCTTCCEEECCSSBC
T ss_pred             CccC-ccChhhccCcccCCEEeCCCCCCCccccC--------------------------cccccCcccCCEEECCCCcc
Confidence            7665 34445666677777777777665321000                          01144566677777777766


Q ss_pred             ccccchhhhhccccceeeeecccCcCCCCCcCccCC--ccccEEeCCCCccCCCCchhhh-------ccCCcceEEEccC
Q 048657          183 NGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSH--KQLRLLDISTNNFRGHIPVEIG-------DVLPSLYVFNNSM  253 (456)
Q Consensus       183 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~l~l~~  253 (456)
                      .+..+..++..+++|++|++++|.+....+..+..+  .+++.++++++.+.+..+..+.       ..+++|+.+++++
T Consensus       142 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  221 (455)
T 3v47_A          142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG  221 (455)
T ss_dssp             CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT
T ss_pred             CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCC
Confidence            655555545666666666666666665555555443  5667777777666532222111       0134555555555


Q ss_pred             CccCCCccccccC---CCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccccc--ccccccEEEccCcc
Q 048657          254 NALDGSIPSSFGN---MKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF--NLANLKLLQLEGNR  328 (456)
Q Consensus       254 ~~~~~~~~~~l~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~  328 (456)
                      |.+.+..+..+..   .++++.|+++++...+....               .+.+.......+.  ..++|+.|++++|.
T Consensus       222 n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  286 (455)
T 3v47_A          222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------------HTNFKDPDNFTFKGLEASGVKTCDLSKSK  286 (455)
T ss_dssp             SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT---------------CCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred             CcccccchhhhhccccccceeeEeeccccccccccc---------------hhhhccCcccccccccccCceEEEecCcc
Confidence            5554444433322   24555555555533211100               0001111111111  23578888888888


Q ss_pred             ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcc
Q 048657          329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPAC  408 (456)
Q Consensus       329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  408 (456)
                      +.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..
T Consensus       287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  366 (455)
T 3v47_A          287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS  366 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence            87666777788888888888888887777777888888888888888887777777888888888888888887776655


Q ss_pred             cc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657          409 FH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       409 ~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      +. +++|++|++++|.+. .++...|..+++|+.|++++|++++..|.
T Consensus       367 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          367 FLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            44 678888888888885 56666677888888888888888888773

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.3e-39  Score=317.71  Aligned_cols=433  Identities=18%  Similarity=0.150  Sum_probs=301.6

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      ++++.+++ +|..++   ++|++|++++|.++.+++..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++
T Consensus        38 ls~~~L~~-ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           38 YSNRNLTH-VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             CTTSCCCS-CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             cCCCCCcc-CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence            45677775 665544   58999999999988888778899999999999999988777888999999999999999988


Q ss_pred             cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCC-CC
Q 048657           82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED-GV  160 (456)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~  160 (456)
                       .++..   .+++|++|++++|++.....+..+..+++|+.|++++|.+...   .+...... +|+.+++..+... ..
T Consensus       114 -~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L-~L~~L~L~~n~l~~~~  185 (562)
T 3a79_B          114 -NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL-HLSCILLDLVSYHIKG  185 (562)
T ss_dssp             -EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS-CEEEEEEEESSCCCCS
T ss_pred             -ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc-eeeEEEeecccccccc
Confidence             78863   7889999999999887323346788889999999998887542   11111222 3477777554331 12


Q ss_pred             CchHHhhcCC-CccEEEecCcccccccchhhhhccccceeeeeccc----------------------------CcCCCC
Q 048657          161 TFPKFLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVND----------------------------SLAGPF  211 (456)
Q Consensus       161 ~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------------------------~~~~~~  211 (456)
                      ..+..+..+. ..-.++++++.+.+..+......+++|+.+++..+                            .+....
T Consensus       186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~  265 (562)
T 3a79_B          186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC  265 (562)
T ss_dssp             SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred             cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence            2223333322 01123344444443333333344455555555443                            221100


Q ss_pred             Cc---CccCCccccEEeCCCCccCCCCchhhh----ccCCcceEEEccCCccCCCcc-cccc---CCCCCcEEeccCCcC
Q 048657          212 RL---PIHSHKQLRLLDISTNNFRGHIPVEIG----DVLPSLYVFNNSMNALDGSIP-SSFG---NMKFLQILDLSNNHL  280 (456)
Q Consensus       212 ~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~~~~~-~~l~---~~~~L~~L~l~~~~l  280 (456)
                      ..   .....++|++|++++|.+.+.+|..++    ..++.|+.+++..+.+  .+| ..+.   ...++++|+++++.+
T Consensus       266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~  343 (562)
T 3a79_B          266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPF  343 (562)
T ss_dssp             HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCc
Confidence            00   001123666677766666655555442    2244444444444443  222 1111   125688888888876


Q ss_pred             CCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccc--ccccccCCCCCcEEEcCCCcCccccC
Q 048657          281 TGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE--IPQSLSKCSSLEGLHLNNNSLSGRIP  358 (456)
Q Consensus       281 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~  358 (456)
                      . ....  ...+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.  .+..+..+++|++|++++|.+++.+|
T Consensus       344 ~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  420 (562)
T 3a79_B          344 I-HMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY  420 (562)
T ss_dssp             C-CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred             c-cccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence            5 3221  14688999999999999987788888999999999999999852  34668899999999999999987455


Q ss_pred             c-cccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCC
Q 048657          359 R-WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCS  437 (456)
Q Consensus       359 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  437 (456)
                      . .+..+++|++|++++|.+++..+..+.  ++|+.|++++|+++..+...+..++|++|++++|.+. .++...|..++
T Consensus       421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~  497 (562)
T 3a79_B          421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT  497 (562)
T ss_dssp             SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred             hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence            4 588899999999999999865555443  6999999999999977666677889999999999996 68877789999


Q ss_pred             cceEEEccCcccCCCCC
Q 048657          438 SLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       438 ~L~~L~l~~~~l~~~~p  454 (456)
                      +|+.|++++|++.+..|
T Consensus       498 ~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          498 SLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCCCEECCSCCBCCCHH
T ss_pred             CCCEEEecCCCcCCCcc
Confidence            99999999999987643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.6e-38  Score=315.72  Aligned_cols=414  Identities=18%  Similarity=0.200  Sum_probs=317.4

Q ss_pred             CCccEEeccCCCCCCcccccccCCCCCcEEEc-ccCcccccchhh-----------------------------------
Q 048657           20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYI-DNNDLRGSLPWC-----------------------------------   63 (456)
Q Consensus        20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~-----------------------------------   63 (456)
                      .+++.|+|+++.+....+..++++++|++|+| ++|.+.+..+..                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            35777888877765333357778888888888 666543321100                                   


Q ss_pred             -----h-----------hcCCCCcEEeccC--CccccccCCCCCcCCCCccEEEcCCceeeec----------------c
Q 048657           64 -----L-----------ANMTSLRILDVSS--NQLTGSISSSPLVHLTSIEELMLSNNHFQIP----------------I  109 (456)
Q Consensus        64 -----~-----------~~l~~L~~L~l~~--~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------~  109 (456)
                           +           .....++.+.+..  |.+++ +|. .+.++++|++|++++|.+.+.                .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                 0           0111222233332  56664 776 799999999999999998851                1


Q ss_pred             CCCccc--ccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCC-CchHHhhcCC-------CccEEEecC
Q 048657          110 SLEPFF--NHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGV-TFPKFLYHQH-------DLEYVDLSH  179 (456)
Q Consensus       110 ~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~l~~~~-------~L~~L~l~~  179 (456)
                      .+..+.  .+++|+.|++++|.+....+..   +..+.+|+.|++..+....+ .+|..+..++       +|+.|++++
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~---l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF---LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGG---GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHH---HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence            445555  9999999999999876655433   34556899999976653444 6777766655       999999999


Q ss_pred             cccccccch-hhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCc-ceEEEccCCccC
Q 048657          180 IKMNGEFPT-WLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPS-LYVFNNSMNALD  257 (456)
Q Consensus       180 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~  257 (456)
                      |.+. .+|. ..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.+.
T Consensus       558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC
T ss_pred             CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC
Confidence            9988 6776 24578999999999999988 555 8899999999999999998 78877665 677 999999999988


Q ss_pred             CCccccccCCCC--CcEEeccCCcCCCcccchh----hcCCCcccEEEccCCcccccccccccccccccEEEccCccccc
Q 048657          258 GSIPSSFGNMKF--LQILDLSNNHLTGEIPEHL----AVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG  331 (456)
Q Consensus       258 ~~~~~~l~~~~~--L~~L~l~~~~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  331 (456)
                       .+|..+...+.  |+.|++++|.+.+.++...    ....++|+.|++++|.+.......+..+++|+.|++++|.+. 
T Consensus       633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-  710 (876)
T 4ecn_A          633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-  710 (876)
T ss_dssp             -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred             -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-
Confidence             67777776654  9999999999876554321    113458999999999998655555567899999999999998 


Q ss_pred             cccccccC--------CCCCcEEEcCCCcCccccCcccc--CCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC---
Q 048657          332 EIPQSLSK--------CSSLEGLHLNNNSLSGRIPRWLG--NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD---  398 (456)
Q Consensus       332 ~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~---  398 (456)
                      .+|..+..        +++|+.|++++|.++ .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++++   
T Consensus       711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~  788 (876)
T 4ecn_A          711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD  788 (876)
T ss_dssp             CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC
T ss_pred             ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC
Confidence            55554333        338999999999998 7888887  89999999999999987 577888999999999976   


Q ss_pred             ---CccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657          399 ---NNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  451 (456)
Q Consensus       399 ---~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  451 (456)
                         |.+.+..+..+. +++|+.|++++|.+ +.+|.. +.  ++|+.|+|++|++..
T Consensus       789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC--SSSCEEECCSCTTCE
T ss_pred             cccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hc--CCCCEEECCCCCCCc
Confidence               777777776554 78999999999999 788887 33  799999999999863

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.6e-38  Score=309.35  Aligned_cols=396  Identities=18%  Similarity=0.189  Sum_probs=276.2

Q ss_pred             CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEE
Q 048657           20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM   99 (456)
Q Consensus        20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~   99 (456)
                      ++|++|++++|.++.+++..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEE
Confidence            46777777777776666566777777777777777776666667777777777777777776 44443466777777777


Q ss_pred             cCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecC
Q 048657          100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSH  179 (456)
Q Consensus       100 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  179 (456)
                      +++|.+.....+..+..+++|+.|++++|....                           ...+..+..+++|+.|++++
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~---------------------------~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS---------------------------EIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------------------EECTTTTTTCCEEEEEEEEE
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCcccc---------------------------ccCHhhhhcccccCeeeccC
Confidence            777766532233456666777777776664211                           11123567788999999999


Q ss_pred             cccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCC--chhhhccCCcceEEEccCCccC
Q 048657          180 IKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHI--PVEIGDVLPSLYVFNNSMNALD  257 (456)
Q Consensus       180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~  257 (456)
                      |.+.+..+.. +..+++|++|++..+.........+..+++|+.|++++|.+.+..  +......+++|+.+++..+.+.
T Consensus       158 n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          158 LSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             TTCCEECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred             CcccccChhh-hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence            9988766655 467899999999988765433333456899999999999887421  2222223444555544444322


Q ss_pred             CCcc---------------------------------------------------------------ccccCCCCCcEEe
Q 048657          258 GSIP---------------------------------------------------------------SSFGNMKFLQILD  274 (456)
Q Consensus       258 ~~~~---------------------------------------------------------------~~l~~~~~L~~L~  274 (456)
                      +..+                                                               ......++|+.|+
T Consensus       237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~  316 (549)
T 2z81_A          237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT  316 (549)
T ss_dssp             HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred             hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence            1000                                                               0011234567777


Q ss_pred             ccCCcCCCcccchhhcCCCcccEEEccCCccccccc---ccccccccccEEEccCcccccccc--ccccCCCCCcEEEcC
Q 048657          275 LSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF---SRNFNLANLKLLQLEGNRFVGEIP--QSLSKCSSLEGLHLN  349 (456)
Q Consensus       275 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~  349 (456)
                      +++|.+. .+|..++..+++|++|++++|.+.+..+   ..+..+++|+.|++++|.+++..+  ..+..+++|++|+++
T Consensus       317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls  395 (549)
T 2z81_A          317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS  395 (549)
T ss_dssp             EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred             eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence            7777765 6676665568889999999998876542   335678889999999998874322  457788999999999


Q ss_pred             CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCC
Q 048657          350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLK  429 (456)
Q Consensus       350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~  429 (456)
                      +|.++ .+|..+..+++|++|++++|.++... ..+  .++|+.|++++|++++.+   ...++|++|++++|++. .+|
T Consensus       396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip  467 (549)
T 2z81_A          396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLP  467 (549)
T ss_dssp             TCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCC
T ss_pred             CCCCc-cCChhhcccccccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCC
Confidence            99887 67888888899999999999887443 222  258999999999888754   24779999999999996 677


Q ss_pred             cccccCCCcceEEEccCcccCCCCCC
Q 048657          430 RGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       430 ~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      ..  ..+++|+.|++++|++++.+|+
T Consensus       468 ~~--~~l~~L~~L~Ls~N~l~~~~~~  491 (549)
T 2z81_A          468 DA--SLFPVLLVMKISRNQLKSVPDG  491 (549)
T ss_dssp             CG--GGCTTCCEEECCSSCCCCCCTT
T ss_pred             Cc--ccCccCCEEecCCCccCCcCHH
Confidence            63  5689999999999999987765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=302.61  Aligned_cols=411  Identities=19%  Similarity=0.200  Sum_probs=321.4

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      .++|.+++..+..+.+ +++|++|++++|.++.+.++.|.++++|++|++++|.++ .+|..  .+++|++|++++|.++
T Consensus        28 Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~  103 (520)
T 2z7x_B           28 ISQNYISELWTSDILS-LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFD  103 (520)
T ss_dssp             CCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCS
T ss_pred             CCCCcccccChhhccc-cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccc
Confidence            4688999988899999 999999999999999987789999999999999999998 55555  8999999999999998


Q ss_pred             c-ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccc--eEEeccCccc--ccccccCcCCC---------------
Q 048657           82 G-SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRL--KFFYAENNQI--NAEITQSHSLI---------------  141 (456)
Q Consensus        82 ~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~--~~~~~~~~~~~---------------  141 (456)
                      + .+|. .+.++++|++|++++|.+..    ..+..+++|  +.+++++|.+  .......+..+               
T Consensus       104 ~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  178 (520)
T 2z7x_B          104 ALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF  178 (520)
T ss_dssp             SCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred             cccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence            4 2444 78999999999999998863    345667777  9999999887  33333222221               


Q ss_pred             --------CCccccceeeccCCCCC-----CCCchHHhhcCCCccEEEecCcccccccchhhhh--ccccceeeeecccC
Q 048657          142 --------PPKFQLSRLSLSSGYED-----GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE--NNTKLIQLSVVNDS  206 (456)
Q Consensus       142 --------~~~~~L~~l~l~~~~~~-----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~  206 (456)
                              ....+|+.+++..+...     .......+..+++|+.++++++.+.+........  ..++|++|++++|.
T Consensus       179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  258 (520)
T 2z7x_B          179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK  258 (520)
T ss_dssp             CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred             hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence                    23456677766443210     0011235677889999999888776543332221  34689999999999


Q ss_pred             cCCCCCcCc-----cCCccccEEeCCCCccCCCCc-hhhhcc--CCcceEEEccCCccCCCccccccCCCCCcEEeccCC
Q 048657          207 LAGPFRLPI-----HSHKQLRLLDISTNNFRGHIP-VEIGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN  278 (456)
Q Consensus       207 ~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~--~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (456)
                      +.+.++..+     ..++.|+.++++++.+  .+| ..+...  ..+++.++++++.+....  ....+++|++|++++|
T Consensus       259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n  334 (520)
T 2z7x_B          259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN  334 (520)
T ss_dssp             EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred             ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence            887777777     8899999999999887  455 333332  257999999999876432  1268899999999999


Q ss_pred             cCCCcccchhhcCCCcccEEEccCCcccc--cccccccccccccEEEccCccccccccc-cccCCCCCcEEEcCCCcCcc
Q 048657          279 HLTGEIPEHLAVGCVNLESLALSNNNLEG--HMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSG  355 (456)
Q Consensus       279 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~  355 (456)
                      .+.+..+..+ ..+++|++|++++|++.+  ..+..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++
T Consensus       335 ~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          335 LLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             CCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             ccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence            9985566554 479999999999999986  3446678899999999999999864555 47889999999999999987


Q ss_pred             ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc-ccccccEEEccCcccCCCCC
Q 048657          356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF-HPLSIKQVHLSKNMLHGQLK  429 (456)
Q Consensus       356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~l~l~~~~~~~~~~  429 (456)
                      ..+..+.  ++|+.|++++|.++ .+|..+..+++|+.|++++|+++..+...+ ..++|+++++++|++.+..+
T Consensus       414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            7776664  79999999999998 556666799999999999999997666534 37899999999999975544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.6e-36  Score=300.67  Aligned_cols=436  Identities=24%  Similarity=0.241  Sum_probs=301.4

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      +++|.+++..+.+|.+ +++|++|+|++|.++.+++++|.++++|++|+|++|++++..+.+|.++++|++|++++|+++
T Consensus        59 Ls~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~  137 (635)
T 4g8a_A           59 LSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  137 (635)
T ss_dssp             CTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             eeCCCCCCCCHHHHhC-CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence            4688888888888888 999999999999999998888999999999999999998677778999999999999999998


Q ss_pred             cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCC--------------------
Q 048657           82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLI--------------------  141 (456)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--------------------  141 (456)
                       .++...+.++++|++|++++|.+.....+..+..+++|++|++++|.+.......+..+                    
T Consensus       138 -~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i  216 (635)
T 4g8a_A          138 -SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  216 (635)
T ss_dssp             -CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             -CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence             67776789999999999999988744455677888999999999998765432211110                    


Q ss_pred             ----CCccccceeeccCCCCCCCCchHHhhcC------------------------------------------------
Q 048657          142 ----PPKFQLSRLSLSSGYEDGVTFPKFLYHQ------------------------------------------------  169 (456)
Q Consensus       142 ----~~~~~L~~l~l~~~~~~~~~~~~~l~~~------------------------------------------------  169 (456)
                          .....++.+++.............+..+                                                
T Consensus       217 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  296 (635)
T 4g8a_A          217 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD  296 (635)
T ss_dssp             CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred             CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence                0001122222211110000011111112                                                


Q ss_pred             ---------CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhh
Q 048657          170 ---------HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIG  240 (456)
Q Consensus       170 ---------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  240 (456)
                               .+++.+++.++.+.... .  ......++.+++.++.+.....   ..++.++.+++..+.... .+ .. 
T Consensus       297 ~~~~~~~~~~~l~~l~~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~-~~-  367 (635)
T 4g8a_A          297 GIIDLFNCLTNVSSFSLVSVTIERVK-D--FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AF-SE-  367 (635)
T ss_dssp             ECTTTTGGGTTCSEEEEESCEEEECG-G--GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC-BC-CC-
T ss_pred             chhhhhhhhccccccccccccccccc-c--cccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC-Cc-cc-
Confidence                     22223333222221110 0  1233445555555554443222   233455555555554331 11 11 


Q ss_pred             ccCCcceEEEccCCccCC--CccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccc-cccccccc
Q 048657          241 DVLPSLYVFNNSMNALDG--SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHM-FSRNFNLA  317 (456)
Q Consensus       241 ~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~  317 (456)
                      ..+++|+.++++.+.+..  ..+.....+.+++.+++..+... ..+.. +..+++|+.+++..+...... ...+..++
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~  445 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  445 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccc-ccccccccchhhhhcccccccccccccccc
Confidence            126677777777776542  23444556777788887777554 33322 235778888888877655433 34466788


Q ss_pred             cccEEEccCccccccccccccCCCCCcEEEcCCCcCc-cccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeC
Q 048657          318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS-GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI  396 (456)
Q Consensus       318 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  396 (456)
                      +++.++++.|.+....+..+..++.++.|++++|.+. ...|+.+..+++|++|++++|++++..+..|..+++|+.|++
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence            8999999999988777888888999999999998744 457788999999999999999999888899999999999999


Q ss_pred             cCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCC-CcceEEEccCcccCC
Q 048657          397 SDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNC-SSLVTLDLSYNRLNG  451 (456)
Q Consensus       397 ~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~  451 (456)
                      ++|++++.++..+. +++|++|++++|++.+ ++.+.|..+ ++|+.|++++|++.-
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCB-CCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCC-CCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99999988777665 6899999999999975 444447777 689999999998753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.7e-35  Score=282.83  Aligned_cols=357  Identities=19%  Similarity=0.185  Sum_probs=232.0

Q ss_pred             CCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccc-cchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccE
Q 048657           19 MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG-SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE   97 (456)
Q Consensus        19 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~   97 (456)
                      .++|++|+|++|.++.+.+..|.++++|++|++++|.+.+ ..+..|.++++|++|++++|.++ .+....+.++++|++
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEV  107 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC-EECTTTTTTCTTCCE
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC-ccChhhccCcccCCE
Confidence            3689999999999999877899999999999999998863 44678999999999999999998 554448999999999


Q ss_pred             EEcCCceeeec-cCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEE
Q 048657           98 LMLSNNHFQIP-ISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVD  176 (456)
Q Consensus        98 L~l~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~  176 (456)
                      |++++|.+... .....+..+++|++|++++|.+.....                           ...+..+++|+.|+
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------------~~~~~~l~~L~~L~  160 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP---------------------------ASFFLNMRRFHVLD  160 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC---------------------------CGGGGGCTTCCEEE
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc---------------------------ccccCCCCcccEEe
Confidence            99999998732 223447889999999999988753211                           12366788999999


Q ss_pred             ecCcccccccchhhhh-ccccceeeeecccCcCCCCCcC--------ccCCccccEEeCCCCccCCCCchhhhcc--CCc
Q 048657          177 LSHIKMNGEFPTWLLE-NNTKLIQLSVVNDSLAGPFRLP--------IHSHKQLRLLDISTNNFRGHIPVEIGDV--LPS  245 (456)
Q Consensus       177 l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~  245 (456)
                      +++|.+.+..+..+.. ....++.++++.+.+.......        +..+++|+.|++++|.+.+..+..+...  .++
T Consensus       161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  240 (455)
T 3v47_A          161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK  240 (455)
T ss_dssp             CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred             CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence            9999887665554322 2268899999988877644433        3356899999999999886666655543  378


Q ss_pred             ceEEEccCCccCCCcc----------cccc--CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccc
Q 048657          246 LYVFNNSMNALDGSIP----------SSFG--NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN  313 (456)
Q Consensus       246 L~~l~l~~~~~~~~~~----------~~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  313 (456)
                      ++.++++.+...+...          ..+.  ..++|+.|++++|.+. ......+..+++|++|++++|.+.+..+..+
T Consensus       241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  319 (455)
T 3v47_A          241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAF  319 (455)
T ss_dssp             EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHh
Confidence            9999999886543211          0011  1234555555555444 2222222344555555555555544444444


Q ss_pred             cccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCe
Q 048657          314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI  393 (456)
Q Consensus       314 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  393 (456)
                      ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++..+..+++|+.
T Consensus       320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence            44555555555555554333444445555555555555554444444555555555555555554444444444555555


Q ss_pred             EeCcCCccCCC
Q 048657          394 LDISDNNISGS  404 (456)
Q Consensus       394 L~l~~~~l~~~  404 (456)
                      |++++|++++.
T Consensus       400 L~l~~N~l~~~  410 (455)
T 3v47_A          400 IWLHTNPWDCS  410 (455)
T ss_dssp             EECCSSCBCCC
T ss_pred             EEccCCCcccC
Confidence            55555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.9e-35  Score=290.84  Aligned_cols=411  Identities=19%  Similarity=0.196  Sum_probs=300.6

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      .++|.+++..+..+.+ +++|++|++++|.++.+.+++|.++++|++|++++|.++ .+|..  .+++|++|++++|.++
T Consensus        59 Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~  134 (562)
T 3a79_B           59 LSQNSISELRMPDISF-LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD  134 (562)
T ss_dssp             CCSSCCCCCCGGGTTT-CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS
T ss_pred             CCCCCccccChhhhcc-CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc
Confidence            4688999888889999 999999999999999998889999999999999999998 55655  8999999999999998


Q ss_pred             cccCC-CCCcCCCCccEEEcCCceeeeccCCCcccccccc--eEEeccCccc--ccccccCcCCC---------------
Q 048657           82 GSISS-SPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRL--KFFYAENNQI--NAEITQSHSLI---------------  141 (456)
Q Consensus        82 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~--~~~~~~~~~~~---------------  141 (456)
                       .++. ..+.++++|++|++++|.+.. .   .+..++++  +.+++++|.+  .......+..+               
T Consensus       135 -~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  209 (562)
T 3a79_B          135 -VLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF  209 (562)
T ss_dssp             -BCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred             -ccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence             5542 478999999999999998863 2   34444555  9999999887  43322222211               


Q ss_pred             --------CCccccceeeccCCCCC---CCCchHHhhcCCCccEEEecCcccccccchhh--hhccccceeeeecccCcC
Q 048657          142 --------PPKFQLSRLSLSSGYED---GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWL--LENNTKLIQLSVVNDSLA  208 (456)
Q Consensus       142 --------~~~~~L~~l~l~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~  208 (456)
                              ....+|+.+++......   .......+...++++.+++.++.+.+......  ....++|++|++++|.+.
T Consensus       210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  289 (562)
T 3a79_B          210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT  289 (562)
T ss_dssp             CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred             hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence                    12335566655433211   01122345566777777777665543222111  123358999999999988


Q ss_pred             CCCCcCc-----cCCccccEEeCCCCccCCCCchh-hhcc--CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcC
Q 048657          209 GPFRLPI-----HSHKQLRLLDISTNNFRGHIPVE-IGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL  280 (456)
Q Consensus       209 ~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~-~~~~--~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  280 (456)
                      +.++..+     ..++.|+.+++..+.+  .+|.. ....  ..+++.++++.+.+....  ....+++|++|++++|.+
T Consensus       290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l  365 (562)
T 3a79_B          290 ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVF  365 (562)
T ss_dssp             SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred             ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcc
Confidence            6666665     6667777777766665  34422 2221  256999999988775322  126788999999999988


Q ss_pred             CCcccchhhcCCCcccEEEccCCcccccc--cccccccccccEEEccCccccccccc-cccCCCCCcEEEcCCCcCcccc
Q 048657          281 TGEIPEHLAVGCVNLESLALSNNNLEGHM--FSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSGRI  357 (456)
Q Consensus       281 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~  357 (456)
                      .+..+..+ ..+++|++|++++|++.+..  +..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+++..
T Consensus       366 ~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  444 (562)
T 3a79_B          366 TDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV  444 (562)
T ss_dssp             CTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred             ccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence            85455443 57899999999999888633  35577889999999999999863444 4778899999999999988666


Q ss_pred             CccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc-ccccccEEEccCcccCCCCC
Q 048657          358 PRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF-HPLSIKQVHLSKNMLHGQLK  429 (456)
Q Consensus       358 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~l~l~~~~~~~~~~  429 (456)
                      +..+.  ++|+.|++++|.++. +|..+..+++|+.|++++|+++..+...+ ..++|+++++++|++.+..+
T Consensus       445 ~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          445 FRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             GSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             hhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            66554  789999999999984 45555589999999999999987666523 47889999999998865443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.3e-34  Score=275.39  Aligned_cols=345  Identities=24%  Similarity=0.302  Sum_probs=261.0

Q ss_pred             CCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEE
Q 048657           19 MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL   98 (456)
Q Consensus        19 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L   98 (456)
                      ++++++|+++++.++.++  .+..+++|++|++++|.+++..+  +.++++|++|++++|.++ .++.  +.++++|++|
T Consensus        45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEE
Confidence            568999999999888776  48889999999999999885543  888999999999999888 5554  7889999999


Q ss_pred             EcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEec
Q 048657           99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLS  178 (456)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~  178 (456)
                      ++++|.+.. .+  .+..+++|++|++++|.+..                             + ..+..+++|+.|+++
T Consensus       118 ~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~-----------------------------~-~~~~~l~~L~~L~l~  164 (466)
T 1o6v_A          118 TLFNNQITD-ID--PLKNLTNLNRLELSSNTISD-----------------------------I-SALSGLTSLQQLSFG  164 (466)
T ss_dssp             ECCSSCCCC-CG--GGTTCTTCSEEEEEEEEECC-----------------------------C-GGGTTCTTCSEEEEE
T ss_pred             ECCCCCCCC-Ch--HHcCCCCCCEEECCCCccCC-----------------------------C-hhhccCCcccEeecC
Confidence            999998763 22  37788899999998886642                             1 135677888888886


Q ss_pred             CcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCC
Q 048657          179 HIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG  258 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  258 (456)
                      + .+.+. +.  +..+++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+   ...+++|+.+++++|.+.+
T Consensus       165 ~-~~~~~-~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~  235 (466)
T 1o6v_A          165 N-QVTDL-KP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD  235 (466)
T ss_dssp             E-SCCCC-GG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC
T ss_pred             C-cccCc-hh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc
Confidence            3 33222 21  56788888888888887653  246778888888888888774433   2337788888888887764


Q ss_pred             CccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccccc
Q 048657          259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS  338 (456)
Q Consensus       259 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  338 (456)
                      .  ..+..+++|+.|++++|.+. ..+.  +..+++|++|++++|.+.+...  +..+++|+.|++++|.+.+..+  +.
T Consensus       236 ~--~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~  306 (466)
T 1o6v_A          236 I--GTLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS  306 (466)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred             c--hhhhcCCCCCEEECCCCccc-cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence            3  45777888888888888877 3333  3467888888888888776443  6678888888888888874333  67


Q ss_pred             CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEE
Q 048657          339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVH  418 (456)
Q Consensus       339 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~  418 (456)
                      .+++|+.|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..+ ...+++|+.|+
T Consensus       307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  381 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLG  381 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEE
T ss_pred             CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEe
Confidence            78888888888888875544  67788888888888888754  467788888888888888887665 44577888888


Q ss_pred             ccCcccCC
Q 048657          419 LSKNMLHG  426 (456)
Q Consensus       419 l~~~~~~~  426 (456)
                      +++|.+++
T Consensus       382 l~~n~~~~  389 (466)
T 1o6v_A          382 LNDQAWTN  389 (466)
T ss_dssp             CCCEEEEC
T ss_pred             ccCCcccC
Confidence            88888864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.5e-34  Score=284.61  Aligned_cols=430  Identities=20%  Similarity=0.176  Sum_probs=295.2

Q ss_pred             hhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCC
Q 048657           10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL   89 (456)
Q Consensus        10 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~   89 (456)
                      ++|+.++.   ++++|+|++|.++.+++.+|.++++|++|+|++|.+++..+.+|.++++|++|++++|+++ .++...+
T Consensus        45 ~vP~~lp~---~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f  120 (635)
T 4g8a_A           45 KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAF  120 (635)
T ss_dssp             SCCSSSCT---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGG
T ss_pred             ccCCCCCc---CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHh
Confidence            34544433   7999999999999999889999999999999999999777889999999999999999999 7887688


Q ss_pred             cCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcC
Q 048657           90 VHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQ  169 (456)
Q Consensus        90 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~  169 (456)
                      .++++|++|++++|.+. ..+...+..+++|+.|++++|.+......  .......+|++|++..+..... .+..+..+
T Consensus       121 ~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L  196 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQSI-YCTDLRVL  196 (635)
T ss_dssp             TTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCC--GGGGGCTTCCEEECCSSCCCEE-CGGGGHHH
T ss_pred             cCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCc--hhhccchhhhhhcccCcccccc-ccccccch
Confidence            99999999999999987 45566788999999999999988643211  1123345788888866543221 12222221


Q ss_pred             C----CccEEEecCccccc-----------------------ccchhhhhccccceeeeecccCc---------------
Q 048657          170 H----DLEYVDLSHIKMNG-----------------------EFPTWLLENNTKLIQLSVVNDSL---------------  207 (456)
Q Consensus       170 ~----~L~~L~l~~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~~---------------  207 (456)
                      .    ....++++.+.+..                       ......+..+..++...+.....               
T Consensus       197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~  276 (635)
T 4g8a_A          197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE  276 (635)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred             hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence            1    12234444433321                       11111122222222222211000               


Q ss_pred             ---------------CC---CCCcCccCCccc----------------------cEEeCCCCccCCCCchhhhccCCcce
Q 048657          208 ---------------AG---PFRLPIHSHKQL----------------------RLLDISTNNFRGHIPVEIGDVLPSLY  247 (456)
Q Consensus       208 ---------------~~---~~~~~l~~~~~L----------------------~~L~l~~~~~~~~~~~~~~~~~~~L~  247 (456)
                                     ..   .....+.....+                      +.|++.++.+. .++.   ..+..++
T Consensus       277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~---~~l~~L~  352 (635)
T 4g8a_A          277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT---LKLKSLK  352 (635)
T ss_dssp             GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES-SCCC---CBCTTCC
T ss_pred             cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc-CcCc---ccchhhh
Confidence                           00   000111222233                      33444433332 1111   1133444


Q ss_pred             EEEccCCccCCCccccccCCCCCcEEeccCCcCCCcc-cchhhcCCCcccEEEccCCcccccccccccccccccEEEccC
Q 048657          248 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI-PEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEG  326 (456)
Q Consensus       248 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  326 (456)
                      .+.+..+....  +.....+++|+.++++++.+.... .........+|+.+++..+..... ...+..+++|+.+++..
T Consensus       353 ~l~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~  429 (635)
T 4g8a_A          353 RLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQH  429 (635)
T ss_dssp             EEEEESCCSCC--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTT
T ss_pred             hcccccccCCC--Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhh
Confidence            55554443322  223345778888888887664221 112223567888888888766543 34456788999999988


Q ss_pred             ccccccc-cccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCccc-ccCchhccCCCCCCeEeCcCCccCCC
Q 048657          327 NRFVGEI-PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE-GLIPVEFCQLDSLQILDISDNNISGS  404 (456)
Q Consensus       327 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~  404 (456)
                      +...... ...+..+++++.++++.|.+....+..+..+++++.|++++|.+. ...+..+..+++|+.|++++|++++.
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l  509 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL  509 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence            8765433 356788999999999999998888889999999999999999754 45678899999999999999999988


Q ss_pred             CCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657          405 LPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       405 ~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      ++..+. +++|++|++++|++. .++...|..+++|+.|++++|++++..|+
T Consensus       510 ~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          510 SPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCC-BCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             ChHHHcCCCCCCEEECCCCcCC-CCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            877765 789999999999996 56666799999999999999999988775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.8e-34  Score=271.67  Aligned_cols=378  Identities=21%  Similarity=0.239  Sum_probs=252.5

Q ss_pred             CCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCC-------------cEEeccCCccccccC
Q 048657           19 MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSL-------------RILDVSSNQLTGSIS   85 (456)
Q Consensus        19 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~i~~~~~   85 (456)
                      .++|++|+++++.++.+| ..++++++|++|++++|.+.+..|..+.++++|             ++|++++|.++ .+|
T Consensus        10 ~~~L~~L~l~~n~l~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred             cccchhhhcccCchhhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence            578899999988887777 478889999999999888887888888777654             89999999888 566


Q ss_pred             CCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHH
Q 048657           86 SSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKF  165 (456)
Q Consensus        86 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  165 (456)
                      .  +  .++|++|++++|.+.. .+ .   ..++|+.+++++|.+.....       ...+|++|++..+....  ++ .
T Consensus        88 ~--~--~~~L~~L~l~~n~l~~-lp-~---~~~~L~~L~l~~n~l~~l~~-------~~~~L~~L~L~~n~l~~--lp-~  148 (454)
T 1jl5_A           88 E--L--PPHLESLVASCNSLTE-LP-E---LPQSLKSLLVDNNNLKALSD-------LPPLLEYLGVSNNQLEK--LP-E  148 (454)
T ss_dssp             S--C--CTTCSEEECCSSCCSS-CC-C---CCTTCCEEECCSSCCSCCCS-------CCTTCCEEECCSSCCSS--CC-C
T ss_pred             C--C--cCCCCEEEccCCcCCc-cc-c---ccCCCcEEECCCCccCcccC-------CCCCCCEEECcCCCCCC--Cc-c
Confidence            5  2  3789999999988773 22 1   24789999999887764221       11588889886665443  44 4


Q ss_pred             hhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCc
Q 048657          166 LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPS  245 (456)
Q Consensus       166 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  245 (456)
                      +..+++|+.|++++|.+.+ ++.    ...+|++|++++|.+... + .++.+++|+.|++++|.+. .+|.    ..++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~  216 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLK-KLPD----LPLS  216 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCC----CCTT
T ss_pred             cCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCC-cCCC----CcCc
Confidence            7888999999999998764 443    335899999999988773 3 5889999999999999887 3443    2468


Q ss_pred             ceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEcc
Q 048657          246 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLE  325 (456)
Q Consensus       246 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  325 (456)
                      |+.+++++|.+. .+| .+..+++|++|++++|.+. .++.    .+++|++|++++|.+.+.. .   .+++|+.|+++
T Consensus       217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l~-~---~~~~L~~L~ls  285 (454)
T 1jl5_A          217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVS  285 (454)
T ss_dssp             CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECC
T ss_pred             ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccccC-c---ccCcCCEEECc
Confidence            999999999887 566 4889999999999999887 4553    3578999999999887633 2   24789999999


Q ss_pred             CccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCC
Q 048657          326 GNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL  405 (456)
Q Consensus       326 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  405 (456)
                      +|.+++ ++.   -.++|++|++++|.+++ ++.   ..++|++|++++|.+++. |..   +++|+.|++++|+++..+
T Consensus       286 ~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~L~~N~l~~lp  353 (454)
T 1jl5_A          286 ENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIEL-PAL---PPRLERLIASFNHLAEVP  353 (454)
T ss_dssp             SSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCCC
T ss_pred             CCccCc-ccC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCccccc-ccc---CCcCCEEECCCCcccccc
Confidence            999874 221   12689999999998873 222   125899999999998863 332   578999999999998654


Q ss_pred             CcccccccccEEEccCcccCC--CCCcccccCC-------------CcceEEEccCcccCC--CCCCC
Q 048657          406 PACFHPLSIKQVHLSKNMLHG--QLKRGTFFNC-------------SSLVTLDLSYNRLNG--SIPDW  456 (456)
Q Consensus       406 ~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~-------------~~L~~L~l~~~~l~~--~~p~~  456 (456)
                      .   .+++|++|++++|++.+  .+|.. +.++             ++|+.|++++|++++  ++|.|
T Consensus       354 ~---~l~~L~~L~L~~N~l~~l~~ip~~-l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          354 E---LPQNLKQLHVEYNPLREFPDIPES-VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSSCCCCCTT-CCEEECCC-------------------------------
T ss_pred             c---hhhhccEEECCCCCCCcCCCChHH-HHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence            4   46889999999999976  56655 5555             789999999999987  78754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.2e-32  Score=264.50  Aligned_cols=339  Identities=25%  Similarity=0.334  Sum_probs=266.3

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG   82 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~   82 (456)
                      +++.+.. ++ .+.. +++|++|++++|.++.++.  +.++++|++|++++|.+.+..+  +.++++|++|++++|.++ 
T Consensus        54 ~~~~i~~-l~-~~~~-l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-  125 (466)
T 1o6v_A           54 DRLGIKS-ID-GVEY-LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-  125 (466)
T ss_dssp             CSSCCCC-CT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred             CCCCCcc-Cc-chhh-hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-
Confidence            3444443 33 4677 9999999999999988875  8999999999999999985544  999999999999999998 


Q ss_pred             ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCc
Q 048657           83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF  162 (456)
Q Consensus        83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  162 (456)
                      .++.  +.++++|++|++++|.+..   ...+..+++|+.+++++ .+.                             ..
T Consensus       126 ~~~~--~~~l~~L~~L~l~~n~l~~---~~~~~~l~~L~~L~l~~-~~~-----------------------------~~  170 (466)
T 1o6v_A          126 DIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGN-QVT-----------------------------DL  170 (466)
T ss_dssp             CCGG--GTTCTTCSEEEEEEEEECC---CGGGTTCTTCSEEEEEE-SCC-----------------------------CC
T ss_pred             CChH--HcCCCCCCEEECCCCccCC---ChhhccCCcccEeecCC-ccc-----------------------------Cc
Confidence            5554  8899999999999998873   23577889999998863 221                             11


Q ss_pred             hHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhcc
Q 048657          163 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV  242 (456)
Q Consensus       163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  242 (456)
                       ..+..+++|+.|++++|.+.+. +  .+..+++|++|++++|.+....+  ++.+++|+.|++++|.+.+ ++ . ...
T Consensus       171 -~~~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~-l~~  241 (466)
T 1o6v_A          171 -KPLANLTTLERLDISSNKVSDI-S--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-T-LAS  241 (466)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-G-GGG
T ss_pred             -hhhccCCCCCEEECcCCcCCCC-h--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-h-hhc
Confidence             1256677888888888876543 2  24677888888888887766443  6678888999998888763 32 2 234


Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +++|+.+++++|.+.+..+  +..+++|++|++++|.+. .++.  ...+++|++|++++|.+.+..+  +..+++|+.|
T Consensus       242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence            7889999999988875543  788899999999999887 4444  4468899999999998876543  6688999999


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..|  +..+++|+.|++++|+++
T Consensus       315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            999999885544  67889999999999988754  468889999999999999987665  788999999999999988


Q ss_pred             CCCC
Q 048657          403 GSLP  406 (456)
Q Consensus       403 ~~~~  406 (456)
                      +.+.
T Consensus       389 ~~p~  392 (466)
T 1o6v_A          389 NAPV  392 (466)
T ss_dssp             CCCB
T ss_pred             CCch
Confidence            7543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=273.10  Aligned_cols=320  Identities=18%  Similarity=0.184  Sum_probs=185.5

Q ss_pred             cEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCC
Q 048657           23 KYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN  102 (456)
Q Consensus        23 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~  102 (456)
                      +.++.++..++.+|. .+.  +++++|++++|.+++..+..|.++++|++|++++|.++ .+....+.++++|++|++++
T Consensus        14 ~~v~c~~~~l~~ip~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFVAVPE-GIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCSSCCS-CCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcCCC-CCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence            566777666777764 332  57788888888887666777888888888888888877 45444777888888888888


Q ss_pred             ceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCccc
Q 048657          103 NHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKM  182 (456)
Q Consensus       103 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  182 (456)
                      |.+. ..+...+..+++|+.|++++|.+...                            .+..+..+++|+.|++++|.+
T Consensus        90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~----------------------------~~~~~~~l~~L~~L~l~~n~l  140 (477)
T 2id5_A           90 NRLK-LIPLGVFTGLSNLTKLDISENKIVIL----------------------------LDYMFQDLYNLKSLEVGDNDL  140 (477)
T ss_dssp             SCCC-SCCTTSSTTCTTCCEEECTTSCCCEE----------------------------CTTTTTTCTTCCEEEECCTTC
T ss_pred             CcCC-ccCcccccCCCCCCEEECCCCccccC----------------------------ChhHccccccCCEEECCCCcc
Confidence            8776 44445566677777777777665321                            122344566777777777665


Q ss_pred             ccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccc
Q 048657          183 NGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPS  262 (456)
Q Consensus       183 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  262 (456)
                      ....+.. +..+++|++|++++|.+.......+..                         +++|+.++++.+.+.+..+.
T Consensus       141 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~-------------------------l~~L~~L~l~~n~i~~~~~~  194 (477)
T 2id5_A          141 VYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSH-------------------------LHGLIVLRLRHLNINAIRDY  194 (477)
T ss_dssp             CEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTT-------------------------CTTCCEEEEESCCCCEECTT
T ss_pred             ceeChhh-ccCCCCCCEEECCCCcCcccChhHhcc-------------------------cCCCcEEeCCCCcCcEeChh
Confidence            4332222 234445555555544444333333444                         44555555555544443344


Q ss_pred             cccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCC
Q 048657          263 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSS  342 (456)
Q Consensus       263 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  342 (456)
                      .+..+++|+.|+++++...+.++...+ ...+|++|++++|.+.......+..+++|+.|++++|.+.+..+..+..+++
T Consensus       195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (477)
T 2id5_A          195 SFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR  273 (477)
T ss_dssp             CSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred             hcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence            455555555555555544334443332 2335555555555555444444455555666666655555444444555556


Q ss_pred             CcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          343 LEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       343 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      |++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            666666666555555555555666666666666555555555555556666666655554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.2e-33  Score=269.11  Aligned_cols=356  Identities=19%  Similarity=0.208  Sum_probs=222.3

Q ss_pred             chhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCC
Q 048657            9 TSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP   88 (456)
Q Consensus         9 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~   88 (456)
                      +..+..+++ +++|++|++++|.++.++  .+..+++|++|++++|.+++. +  +..+++|++|++++|.++ .++   
T Consensus        32 ~~~~~~~~~-l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---  101 (457)
T 3bz5_A           32 ATDTISEEQ-LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---  101 (457)
T ss_dssp             TTSEEEHHH-HTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---
T ss_pred             cccccChhH-cCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---
Confidence            333445666 888888888888877765  578888888888888888753 3  777888888888888887 443   


Q ss_pred             CcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhc
Q 048657           89 LVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYH  168 (456)
Q Consensus        89 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~  168 (456)
                      +.++++|++|++++|.+.. .   .+..+++|+.|++++|.+...                               .+..
T Consensus       102 ~~~l~~L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l-------------------------------~l~~  146 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEI-------------------------------DVSH  146 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCC-------------------------------CCTT
T ss_pred             cCCCCcCCEEECCCCcCCe-e---cCCCCCcCCEEECCCCcccee-------------------------------cccc
Confidence            6778888888888887763 2   267778888888887766421                               1345


Q ss_pred             CCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceE
Q 048657          169 QHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYV  248 (456)
Q Consensus       169 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  248 (456)
                      +++|+.|++++|...+.++   +..+++|+.|++++|.+....   +..+++|+.|++++|.+.+ ++  + ..+++|+.
T Consensus       147 l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~-~~--l-~~l~~L~~  216 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK-LD--L-NQNIQLTF  216 (457)
T ss_dssp             CTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSC-CC--C-TTCTTCSE
T ss_pred             CCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCe-ec--c-ccCCCCCE
Confidence            6788888888885433332   457788888888888877632   6778888888888888774 32  2 23678888


Q ss_pred             EEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcc
Q 048657          249 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNR  328 (456)
Q Consensus       249 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  328 (456)
                      ++++.|.+.+ +|  +..+++|+.|++++|.+. .++.   ..+++|+.++++++.+              +.|++++|.
T Consensus       217 L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n~L--------------~~L~l~~n~  275 (457)
T 3bz5_A          217 LDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQTDL--------------LEIDLTHNT  275 (457)
T ss_dssp             EECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTCCC--------------SCCCCTTCT
T ss_pred             EECcCCcccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCCCC--------------CEEECCCCc
Confidence            8888888876 44  777888888888888877 3332   2456666666555433              333333333


Q ss_pred             ccccccccccCCCCCcEEEcCCCcCccccCc--------cccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCc
Q 048657          329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPR--------WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNN  400 (456)
Q Consensus       329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  400 (456)
                      ..+..|  +..+++|+.|++++|...+.+|.        .+.++++|++|++++|.+++.   .+..+++|+.|++++|+
T Consensus       276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             TCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSC
T ss_pred             cCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCC
Confidence            322222  23344444444444432222211        133345555566665555543   24555556666666555


Q ss_pred             cCCCCCcc------------cccccccEEEccCcccCCCCCcccccCCCcceEEEcc
Q 048657          401 ISGSLPAC------------FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS  445 (456)
Q Consensus       401 l~~~~~~~------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~  445 (456)
                      +++...-.            .....+..+++++|.++|.+|...+....++.....+
T Consensus       351 l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~  407 (457)
T 3bz5_A          351 IQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG  407 (457)
T ss_dssp             CCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred             CCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhcccCceeeccCC
Confidence            55421000            0123455556666666666665544444444444333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.7e-32  Score=250.66  Aligned_cols=151  Identities=22%  Similarity=0.290  Sum_probs=77.0

Q ss_pred             ccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCC
Q 048657          264 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL  343 (456)
Q Consensus       264 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  343 (456)
                      +..+++|+.++++++.+. ..+.  ...+++|++|++++|.+.+...  +..+++|++|++++|.+.+ . ..+..+++|
T Consensus       195 ~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L  267 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKL  267 (347)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred             ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCc
Confidence            334444444444444443 2221  2234455555555554443322  3445555555555555542 1 234555566


Q ss_pred             cEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcc
Q 048657          344 EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNM  423 (456)
Q Consensus       344 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~  423 (456)
                      ++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+ ...+++|+++++++|.
T Consensus       268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence            6666666655532  345556666666666666655555555666666666666666655443 3335566666666665


Q ss_pred             c
Q 048657          424 L  424 (456)
Q Consensus       424 ~  424 (456)
                      +
T Consensus       345 i  345 (347)
T 4fmz_A          345 I  345 (347)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.4e-32  Score=253.21  Aligned_cols=309  Identities=21%  Similarity=0.252  Sum_probs=182.8

Q ss_pred             CCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccce
Q 048657           42 SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLK  121 (456)
Q Consensus        42 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  121 (456)
                      .++++++|+++++.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+. ..++..+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            4577888888888877555556777888888888888887 565557778888888888888776 34445556666677


Q ss_pred             EEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchH-HhhcCCCccEEEecCcccccccchhhhhccccceee
Q 048657          122 FFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPK-FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQL  200 (456)
Q Consensus       122 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  200 (456)
                      .|++++|.+..                             ++. .+..+++|+.|++++|.+.+.               
T Consensus       121 ~L~L~~n~l~~-----------------------------l~~~~~~~l~~L~~L~L~~n~l~~~---------------  156 (390)
T 3o6n_A          121 VLVLERNDLSS-----------------------------LPRGIFHNTPKLTTLSMSNNNLERI---------------  156 (390)
T ss_dssp             EEECCSSCCCC-----------------------------CCTTTTTTCTTCCEEECCSSCCCBC---------------
T ss_pred             EEECCCCccCc-----------------------------CCHHHhcCCCCCcEEECCCCccCcc---------------
Confidence            77766665431                             111 124455666666666655422               


Q ss_pred             eecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcC
Q 048657          201 SVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL  280 (456)
Q Consensus       201 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  280 (456)
                                .+..+..+++|+.|++++|.+.+ .+   ...+++|+.++++.+.+..     +...+.|++|++++|.+
T Consensus       157 ----------~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          157 ----------EDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI  217 (390)
T ss_dssp             ----------CTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCC
T ss_pred             ----------ChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeecccccccc-----cCCCCcceEEECCCCee
Confidence                      22334445555555555555542 21   1124556666665554432     22344566666666665


Q ss_pred             CCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCcc
Q 048657          281 TGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW  360 (456)
Q Consensus       281 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  360 (456)
                      . .++..   .+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++..
T Consensus       218 ~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~  290 (390)
T 3o6n_A          218 N-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY  290 (390)
T ss_dssp             C-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECS
T ss_pred             e-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcc
Confidence            5 33332   235666666666666543  34455666666666666666555556666666666666666665 33444


Q ss_pred             ccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657          361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~  425 (456)
                      +..+++|++|++++|.+.. .+..+..+++|+.|++++|+++...  ...+++|+.|++++|++.
T Consensus       291 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          291 GQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             SSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred             cCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence            4556666666666666653 3444555666666666666665442  223456666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=258.37  Aligned_cols=320  Identities=19%  Similarity=0.191  Sum_probs=243.1

Q ss_pred             CcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEec
Q 048657           46 LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYA  125 (456)
Q Consensus        46 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  125 (456)
                      -+.++.++.+++ ..|..+.  +++++|++++|.++ .++...+.++++|++|++++|.+. ...+..+..+++|+.|++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence            357888888887 5566554  68999999999999 666568999999999999999887 455567778888888888


Q ss_pred             cCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeeccc
Q 048657          126 ENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVND  205 (456)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  205 (456)
                      ++|.+....                            +..+..+++|+.|++++|.+...                    
T Consensus        88 ~~n~l~~~~----------------------------~~~~~~l~~L~~L~Ls~n~i~~~--------------------  119 (477)
T 2id5_A           88 RSNRLKLIP----------------------------LGVFTGLSNLTKLDISENKIVIL--------------------  119 (477)
T ss_dssp             CSSCCCSCC----------------------------TTSSTTCTTCCEEECTTSCCCEE--------------------
T ss_pred             CCCcCCccC----------------------------cccccCCCCCCEEECCCCccccC--------------------
Confidence            877654210                            11234456666666666655432                    


Q ss_pred             CcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCccc
Q 048657          206 SLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP  285 (456)
Q Consensus       206 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~  285 (456)
                           .+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+++.|.+.+..+..+..+++|+.|+++++.+. .++
T Consensus       120 -----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~  192 (477)
T 2id5_A          120 -----LDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIR  192 (477)
T ss_dssp             -----CTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EEC
T ss_pred             -----ChhHccccccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-EeC
Confidence                 23344556666666666666653323233 33677777777777777655667888999999999999887 555


Q ss_pred             chhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCC
Q 048657          286 EHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLT  365 (456)
Q Consensus       286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  365 (456)
                      ...+..+++|++|++++|...+..+.......+|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..++
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence            55566789999999999877665555555566899999999998854446788899999999999999877778889999


Q ss_pred             CCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657          366 WLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH  425 (456)
Q Consensus       366 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~  425 (456)
                      +|++|++++|.+.+..+..|..+++|+.|++++|.+++.++..+. +++|++|++++|.+.
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            999999999999888888899999999999999999887766654 678999999998875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.5e-32  Score=255.84  Aligned_cols=388  Identities=23%  Similarity=0.250  Sum_probs=249.2

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCC-------------cEEEcccCcccccchhhhhcCC
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHL-------------QELYIDNNDLRGSLPWCLANMT   68 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~~~~~~~~l~   68 (456)
                      .++|.+ +.+|+++++ +++|++|++++|.+....+..++++++|             ++|++++|++++ .|..   .+
T Consensus        18 l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~   91 (454)
T 1jl5_A           18 RHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PP   91 (454)
T ss_dssp             ------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CT
T ss_pred             cccCch-hhCChhHhc-ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cC
Confidence            457888 899999999 9999999999988653333577777764             999999999884 3432   37


Q ss_pred             CCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccc
Q 048657           69 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLS  148 (456)
Q Consensus        69 ~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~  148 (456)
                      +|++|++++|.++ .++. .   +++|++|++++|.+.. .+  .  ..++|+.|++++|.+....     .+....+|+
T Consensus        92 ~L~~L~l~~n~l~-~lp~-~---~~~L~~L~l~~n~l~~-l~--~--~~~~L~~L~L~~n~l~~lp-----~~~~l~~L~  156 (454)
T 1jl5_A           92 HLESLVASCNSLT-ELPE-L---PQSLKSLLVDNNNLKA-LS--D--LPPLLEYLGVSNNQLEKLP-----ELQNSSFLK  156 (454)
T ss_dssp             TCSEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCSC-CC--S--CCTTCCEEECCSSCCSSCC-----CCTTCTTCC
T ss_pred             CCCEEEccCCcCC-cccc-c---cCCCcEEECCCCccCc-cc--C--CCCCCCEEECcCCCCCCCc-----ccCCCCCCC
Confidence            8999999999998 4765 2   3789999999998762 11  1  1268999999999887521     356677899


Q ss_pred             eeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCC
Q 048657          149 RLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDIST  228 (456)
Q Consensus       149 ~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  228 (456)
                      ++++..+....  ++..   ..+|+.|++++|.+.+ ++.  +..+++|++|++.+|.+.....    ..++|+.|++++
T Consensus       157 ~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~  224 (454)
T 1jl5_A          157 IIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGN  224 (454)
T ss_dssp             EEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCS
T ss_pred             EEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcC
Confidence            99997664432  3322   3589999999998875 453  5789999999999998875322    225899999999


Q ss_pred             CccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccc
Q 048657          229 NNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGH  308 (456)
Q Consensus       229 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~  308 (456)
                      |.+. .+|. +. .+++|+.+++++|.+.+ +|.   .+++|+.|++++|.+. .++.    .+++|+++++++|.+.+.
T Consensus       225 n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~-~l~~----~~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          225 NILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             SCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSEE
T ss_pred             CcCC-cccc-cC-CCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccc-ccCc----ccCcCCEEECcCCccCcc
Confidence            9887 6663 33 48899999999998874 443   3478999999999887 4554    247899999999988763


Q ss_pred             ccccccccccccEEEccCccccccccccccCC-CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccC
Q 048657          309 MFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC-SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQ  387 (456)
Q Consensus       309 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  387 (456)
                      ..    ..++|+.|++++|.+.+ ++    .+ ++|++|++++|.+++ +|..   +++|+.|++++|.++.. |.   .
T Consensus       293 ~~----~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~  355 (454)
T 1jl5_A          293 SE----LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---L  355 (454)
T ss_dssp             SC----CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---C
T ss_pred             cC----cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---h
Confidence            21    13789999999999874 22    33 589999999999884 5543   58899999999999854 33   4


Q ss_pred             CCCCCeEeCcCCccCC--CCCcccc-c-------------ccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657          388 LDSLQILDISDNNISG--SLPACFH-P-------------LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  451 (456)
Q Consensus       388 ~~~L~~L~l~~~~l~~--~~~~~~~-~-------------~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  451 (456)
                      +++|+.|++++|++++  ..+..+. .             ++|++|++++|.+.+ ++.    -.++++.|.+.+|.+.+
T Consensus       356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~-~~~----iP~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPD----IPESVEDLRMNSERVVD  430 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------
T ss_pred             hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc-ccc----chhhHhheeCcCcccCC
Confidence            7899999999999988  3343332 2             689999999999965 111    12467888999999988


Q ss_pred             CCCCC
Q 048657          452 SIPDW  456 (456)
Q Consensus       452 ~~p~~  456 (456)
                      .+|.|
T Consensus       431 ~~~~~  435 (454)
T 1jl5_A          431 PYEFA  435 (454)
T ss_dssp             -----
T ss_pred             ccccC
Confidence            87754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.1e-30  Score=239.50  Aligned_cols=307  Identities=17%  Similarity=0.262  Sum_probs=183.0

Q ss_pred             cccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccc
Q 048657           39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHS  118 (456)
Q Consensus        39 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  118 (456)
                      .+..+++|++|+++++.+.. .+ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+..   ...+..++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~---~~~~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD---ISALQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC---CGGGTTCT
T ss_pred             cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC---chHHcCCC
Confidence            35567777888887777763 33 3667777777777777776 4443  6677777777777776541   12344555


Q ss_pred             cceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccce
Q 048657          119 RLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLI  198 (456)
Q Consensus       119 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  198 (456)
                      +|++|++++|.+..                             ++. +..+++|+.|++++|......+.          
T Consensus       111 ~L~~L~l~~n~i~~-----------------------------~~~-~~~l~~L~~L~l~~n~~~~~~~~----------  150 (347)
T 4fmz_A          111 NLRELYLNEDNISD-----------------------------ISP-LANLTKMYSLNLGANHNLSDLSP----------  150 (347)
T ss_dssp             TCSEEECTTSCCCC-----------------------------CGG-GTTCTTCCEEECTTCTTCCCCGG----------
T ss_pred             cCCEEECcCCcccC-----------------------------chh-hccCCceeEEECCCCCCcccccc----------
Confidence            55555555544321                             011 23344444444444422111111          


Q ss_pred             eeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCC
Q 048657          199 QLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN  278 (456)
Q Consensus       199 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (456)
                                      +..                         +++|+.++++++.+.+..+  +..+++|++|++++|
T Consensus       151 ----------------~~~-------------------------l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          151 ----------------LSN-------------------------MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             ----------------GTT-------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             ----------------hhh-------------------------CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence                            122                         3444444444444332211  455666777777777


Q ss_pred             cCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccC
Q 048657          279 HLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIP  358 (456)
Q Consensus       279 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  358 (456)
                      .+. .++.  ...+++|+.+++++|.+.+...  +..+++|++|++++|.+.+. +. +..+++|++|++++|.+++.  
T Consensus       188 ~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--  258 (347)
T 4fmz_A          188 QIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--  258 (347)
T ss_dssp             CCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--
T ss_pred             ccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--
Confidence            665 3333  3356777777777777665433  55677777777777777633 22 66777777777777777632  


Q ss_pred             ccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCC
Q 048657          359 RWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCS  437 (456)
Q Consensus       359 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~  437 (456)
                      ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..+..+. +++|++|++++|.+.+..+   +..++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~  333 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLS  333 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCT
T ss_pred             hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhh
Confidence            4566777777777777777654  3466677777777777777665544433 5677777777777754333   56677


Q ss_pred             cceEEEccCcccC
Q 048657          438 SLVTLDLSYNRLN  450 (456)
Q Consensus       438 ~L~~L~l~~~~l~  450 (456)
                      +|+.|++++|+++
T Consensus       334 ~L~~L~l~~N~i~  346 (347)
T 4fmz_A          334 KMDSADFANQVIK  346 (347)
T ss_dssp             TCSEESSSCC---
T ss_pred             ccceeehhhhccc
Confidence            7777777777765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=5.1e-31  Score=251.03  Aligned_cols=339  Identities=18%  Similarity=0.195  Sum_probs=210.6

Q ss_pred             CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657            2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      +++|.+++. | .+.. +++|++|++++|.++.++   +..+++|++|++++|.+++. +  +..+++|++|++++|.++
T Consensus        49 Ls~n~l~~~-~-~l~~-l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~  119 (457)
T 3bz5_A           49 CHNSSITDM-T-GIEK-LTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT  119 (457)
T ss_dssp             CCSSCCCCC-T-TGGG-CTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS
T ss_pred             ccCCCcccC-h-hhcc-cCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC
Confidence            357788874 5 6888 999999999999988874   88999999999999999854 3  889999999999999998


Q ss_pred             cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCC
Q 048657           82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT  161 (456)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  161 (456)
                       .++   +..+++|++|++++|.+.. .   .+..+++|+.+++++|......     .+....+|+.|++..+..... 
T Consensus       120 -~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l~~l-  185 (457)
T 3bz5_A          120 -KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL-----DVTPQTQLTTLDCSFNKITEL-  185 (457)
T ss_dssp             -CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC-----CCTTCTTCCEEECCSSCCCCC-
T ss_pred             -eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc-----ccccCCcCCEEECCCCcccee-
Confidence             453   7889999999999999874 2   3778999999999998532211     123334555555544332221 


Q ss_pred             chHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhc
Q 048657          162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD  241 (456)
Q Consensus       162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  241 (456)
                       +  +..+++|+.|++++|.+.+. +   +..+++|+.|++++|.+... +  +..+++|+.|++++|.+.+ .+.   .
T Consensus       186 -~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~-~~~---~  251 (457)
T 3bz5_A          186 -D--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE-LDV---S  251 (457)
T ss_dssp             -C--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CCC---T
T ss_pred             -c--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC-cCH---H
Confidence             1  34445555555555554432 1   23445555555555554442 1  4444555555555555442 221   1


Q ss_pred             cCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccc--------cc
Q 048657          242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFS--------RN  313 (456)
Q Consensus       242 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~  313 (456)
                      .+++|+.++++.+              +|+.+++++|...+.++.   ..+++|+.|++++|...+..+.        .+
T Consensus       252 ~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l  314 (457)
T 3bz5_A          252 TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGITELDL  314 (457)
T ss_dssp             TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred             HCCCCCEEeccCC--------------CCCEEECCCCccCCcccc---cccccCCEEECCCCcccceeccCCCcceEech
Confidence            1333333333322              233344444443333331   2455666666666643322211        13


Q ss_pred             cccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCe
Q 048657          314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI  393 (456)
Q Consensus       314 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  393 (456)
                      ..+++|+.|++++|.+++ .  .+.++++|+.|++++|++++        ++.|+.|.+++|.+.+.     ..+..|..
T Consensus       315 ~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~  378 (457)
T 3bz5_A          315 SQNPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK  378 (457)
T ss_dssp             TTCTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred             hhcccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence            344667777777777764 2  26667777777777776653        23455566666666543     24457888


Q ss_pred             EeCcCCccCCCCCcccc
Q 048657          394 LDISDNNISGSLPACFH  410 (456)
Q Consensus       394 L~l~~~~l~~~~~~~~~  410 (456)
                      +++++|++++.+|..+.
T Consensus       379 l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          379 ETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             BCCBTTBEEEECCTTCB
T ss_pred             cccccCcEEEEcChhHh
Confidence            99999999988876543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=2.4e-30  Score=242.95  Aligned_cols=311  Identities=20%  Similarity=0.198  Sum_probs=245.4

Q ss_pred             cCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCcc
Q 048657           66 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKF  145 (456)
Q Consensus        66 ~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~  145 (456)
                      .++++++++++++.++ .++...+..+++|++|++++|.+. ......+..+++|+.|++++|.+...            
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~------------  108 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYL------------  108 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCC------------
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcC------------
Confidence            4689999999999998 888766888999999999999886 44555667777777777777765321            


Q ss_pred             ccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEe
Q 048657          146 QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLD  225 (456)
Q Consensus       146 ~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  225 (456)
                                      .+..+..+++|+.|++++|.+                         .......+..+++|++|+
T Consensus       109 ----------------~~~~~~~l~~L~~L~L~~n~l-------------------------~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A          109 ----------------PPHVFQNVPLLTVLVLERNDL-------------------------SSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             ----------------CTTTTTTCTTCCEEECCSSCC-------------------------CCCCTTTTTTCTTCCEEE
T ss_pred             ----------------CHHHhcCCCCCCEEECCCCcc-------------------------CcCCHHHhcCCCCCcEEE
Confidence                            112334455566666655544                         333333457788999999


Q ss_pred             CCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcc
Q 048657          226 ISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL  305 (456)
Q Consensus       226 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~  305 (456)
                      +++|.+.+ ++......+++|+.|++++|.+.+.   .+..+++|+.++++++.+. .++     ..++|+++++++|.+
T Consensus       148 L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          148 MSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSI  217 (390)
T ss_dssp             CCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCC
T ss_pred             CCCCccCc-cChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-ccC-----CCCcceEEECCCCee
Confidence            99998874 4444344589999999999988753   3667899999999999876 332     356899999999998


Q ss_pred             cccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhc
Q 048657          306 EGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF  385 (456)
Q Consensus       306 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  385 (456)
                      ......   .+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. +..+
T Consensus       218 ~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~  291 (390)
T 3o6n_A          218 NVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG  291 (390)
T ss_dssp             CEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSS
T ss_pred             eecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Cccc
Confidence            765332   358999999999999743  5788999999999999999988899999999999999999999864 5556


Q ss_pred             cCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657          386 CQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  451 (456)
Q Consensus       386 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  451 (456)
                      ..+++|+.|++++|+++..+.....+++|++|++++|.+. .++   +..+++|+.|++++|++..
T Consensus       292 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC-CCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc-eeC---chhhccCCEEEcCCCCccc
Confidence            7899999999999999876655555789999999999996 444   5678999999999998764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=6.8e-31  Score=259.78  Aligned_cols=309  Identities=21%  Similarity=0.253  Sum_probs=177.8

Q ss_pred             CCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccce
Q 048657           42 SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLK  121 (456)
Q Consensus        42 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  121 (456)
                      .+.+++.++++++.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+. ..++..+..+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence            3577888888888887666666778888888888888887 555557788888888888888776 34445566677777


Q ss_pred             EEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCch-HHhhcCCCccEEEecCcccccccchhhhhccccceee
Q 048657          122 FFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFP-KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQL  200 (456)
Q Consensus       122 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  200 (456)
                      .|++++|.+..                             ++ ..+..+++|+.|++++|.+.+..              
T Consensus       127 ~L~L~~n~l~~-----------------------------l~~~~~~~l~~L~~L~Ls~N~l~~~~--------------  163 (597)
T 3oja_B          127 VLVLERNDLSS-----------------------------LPRGIFHNTPKLTTLSMSNNNLERIE--------------  163 (597)
T ss_dssp             EEECCSSCCCC-----------------------------CCTTTTTTCTTCCEEECCSSCCCBCC--------------
T ss_pred             EEEeeCCCCCC-----------------------------CCHHHhccCCCCCEEEeeCCcCCCCC--------------
Confidence            77777665531                             11 12345556666666666554332              


Q ss_pred             eecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcC
Q 048657          201 SVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL  280 (456)
Q Consensus       201 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  280 (456)
                                 +..+..+++|+.|++++|.+.+ ++   ...+++|+.++++.|.+.+     +...+.|+.|++++|.+
T Consensus       164 -----------~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          164 -----------DDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI  223 (597)
T ss_dssp             -----------TTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCC
T ss_pred             -----------hhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcc
Confidence                       2333444455555555554442 11   1124455555555554432     22344555666666555


Q ss_pred             CCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCcc
Q 048657          281 TGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW  360 (456)
Q Consensus       281 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  360 (456)
                      . .++...   .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .++..
T Consensus       224 ~-~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~  296 (597)
T 3oja_B          224 N-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY  296 (597)
T ss_dssp             C-EEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECS
T ss_pred             c-cccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcc
Confidence            4 333221   24566666666655542  34445566666666666665555555666666666666666655 23444


Q ss_pred             ccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657          361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~  425 (456)
                      +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++..  ...+++|+.|++++|.+.
T Consensus       297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred             cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence            455566666666666655 23444555566666666666655442  222455666666666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.4e-29  Score=248.73  Aligned_cols=311  Identities=20%  Similarity=0.192  Sum_probs=245.2

Q ss_pred             cCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCcc
Q 048657           66 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKF  145 (456)
Q Consensus        66 ~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~  145 (456)
                      .+++++.++++++.++ .+|...+..+++|++|++++|.+. ..++..+..+++|+.|++++|.+...            
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~------------  114 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYL------------  114 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCC------------
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCC------------
Confidence            4689999999999998 788767888999999999999887 44445667777777777777655321            


Q ss_pred             ccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEe
Q 048657          146 QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLD  225 (456)
Q Consensus       146 ~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  225 (456)
                                      .+..+..+++|+.|++++|.                         +....+..+..+++|+.|+
T Consensus       115 ----------------~~~~~~~l~~L~~L~L~~n~-------------------------l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B          115 ----------------PPHVFQNVPLLTVLVLERND-------------------------LSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             ----------------CTTTTTTCTTCCEEECCSSC-------------------------CCCCCTTTTTTCTTCCEEE
T ss_pred             ----------------CHHHHcCCCCCCEEEeeCCC-------------------------CCCCCHHHhccCCCCCEEE
Confidence                            11223444555555555554                         4433344467788999999


Q ss_pred             CCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcc
Q 048657          226 ISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL  305 (456)
Q Consensus       226 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~  305 (456)
                      +++|.+.+..|..+ ..+++|+.|++++|.+.+.   .+..+++|+.|++++|.+. .++     ..++|++|++++|.+
T Consensus       154 Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~-~l~-----~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          154 MSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSI  223 (597)
T ss_dssp             CCSSCCCBCCTTTT-TTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCTTCSEEECCSSCC
T ss_pred             eeCCcCCCCChhhh-hcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc-ccc-----CCchhheeeccCCcc
Confidence            99998885444444 4489999999999998754   2567899999999999876 332     356899999999998


Q ss_pred             cccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhc
Q 048657          306 EGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF  385 (456)
Q Consensus       306 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  385 (456)
                      ......   ..++|+.|++++|.+.+  +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++. +..+
T Consensus       224 ~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~  297 (597)
T 3oja_B          224 NVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG  297 (597)
T ss_dssp             CEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSS
T ss_pred             cccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cccc
Confidence            765433   24789999999999975  46788999999999999999988899999999999999999999864 5666


Q ss_pred             cCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657          386 CQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  451 (456)
Q Consensus       386 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  451 (456)
                      ..+++|+.|++++|.++..+.....+++|+.|++++|.+.+ ++   +..+++|+.|++++|++++
T Consensus       298 ~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          298 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEH
T ss_pred             ccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC-cC---hhhcCCCCEEEeeCCCCCC
Confidence            78999999999999999765555558899999999999963 43   5678999999999999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.7e-33  Score=269.42  Aligned_cols=361  Identities=21%  Similarity=0.177  Sum_probs=181.8

Q ss_pred             CCCccEEeccCCCCCCccccc-ccCCCCCcEEEcccCcccc----cchhhhhcCCCCcEEeccCCccccccCCCCCcCCC
Q 048657           19 MPSLKYLSLSDSNSSRILDRG-LCSLVHLQELYIDNNDLRG----SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT   93 (456)
Q Consensus        19 ~~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~   93 (456)
                      .++|++|+++++.+++..... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+......++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            457899999998877665433 6788999999999999874    34567777899999999999887322221222334


Q ss_pred             ----CccEEEcCCceeeec---cCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHh
Q 048657           94 ----SIEELMLSNNHFQIP---ISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFL  166 (456)
Q Consensus        94 ----~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l  166 (456)
                          +|++|++++|.+...   ..+..+..+++|++|++++|.+......                        .+...+
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~------------------------~l~~~l  137 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ------------------------LLCEGL  137 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH------------------------HHHHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH------------------------HHHHHH
Confidence                689999998887621   2234556677788888777765421100                        011111


Q ss_pred             h-cCCCccEEEecCcccccccchhh---hhccccceeeeecccCcCCCCCcCcc-----CCccccEEeCCCCccCCCCch
Q 048657          167 Y-HQHDLEYVDLSHIKMNGEFPTWL---LENNTKLIQLSVVNDSLAGPFRLPIH-----SHKQLRLLDISTNNFRGHIPV  237 (456)
Q Consensus       167 ~-~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~  237 (456)
                      . ..++|+.|++++|.+.+.....+   +..+++|++|++++|.+.......+.     ..++|++|++++|.+.+....
T Consensus       138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  217 (461)
T 1z7x_W          138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  217 (461)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence            1 24567777777777654332221   23345555555555544321111111     123445555554444321100


Q ss_pred             hhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCccc----chhhcCCCcccEEEccCCccccc----c
Q 048657          238 EIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP----EHLAVGCVNLESLALSNNNLEGH----M  309 (456)
Q Consensus       238 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~  309 (456)
                                           .++..+..+++|++|++++|.+.+...    ..+...+++|++|++++|.++..    .
T Consensus       218 ---------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  276 (461)
T 1z7x_W          218 ---------------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL  276 (461)
T ss_dssp             ---------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence                                 123334444555555555554432111    11111244555555555544432    1


Q ss_pred             cccccccccccEEEccCcccccccccccc-----CCCCCcEEEcCCCcCccc----cCccccCCCCCcEEEcCCCccccc
Q 048657          310 FSRNFNLANLKLLQLEGNRFVGEIPQSLS-----KCSSLEGLHLNNNSLSGR----IPRWLGNLTWLQYIIMPNNHLEGL  380 (456)
Q Consensus       310 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~  380 (456)
                      ...+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            22233345555555555544322211111     123555555555554432    233344445555555555554433


Q ss_pred             CchhccC-----CCCCCeEeCcCCccCC----CCCccc-ccccccEEEccCccc
Q 048657          381 IPVEFCQ-----LDSLQILDISDNNISG----SLPACF-HPLSIKQVHLSKNML  424 (456)
Q Consensus       381 ~~~~~~~-----~~~L~~L~l~~~~l~~----~~~~~~-~~~~L~~l~l~~~~~  424 (456)
                      .+..+..     .++|++|++++|.+++    ..+..+ ..++|++|++++|.+
T Consensus       357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence            2222221     3455555555555442    111111 144555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.1e-32  Score=265.23  Aligned_cols=350  Identities=20%  Similarity=0.154  Sum_probs=213.1

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCCCcc----cccccCCCCCcEEEcccCcccccchhhhh-cCC----CCcEE
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRIL----DRGLCSLVHLQELYIDNNDLRGSLPWCLA-NMT----SLRIL   73 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~----~L~~L   73 (456)
                      +++.+++.....+...+++|++|++++|.++...    ...+..+++|++|++++|.+.+..+..+. .++    +|++|
T Consensus        11 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L   90 (461)
T 1z7x_W           11 QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL   90 (461)
T ss_dssp             ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE
T ss_pred             hhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEE
Confidence            5677777766664444999999999999987432    24677889999999999999865555444 355    79999


Q ss_pred             eccCCcccc----ccCCCCCcCCCCccEEEcCCceeeeccCCCc-----ccccccceEEeccCcccccccccCcCCCCCc
Q 048657           74 DVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPISLEP-----FFNHSRLKFFYAENNQINAEITQSHSLIPPK  144 (456)
Q Consensus        74 ~l~~~~i~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  144 (456)
                      ++++|.+++    .++. .+..+++|++|++++|.+... .+..     ....++|++|++++|.+.....         
T Consensus        91 ~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~---------  159 (461)
T 1z7x_W           91 SLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDA-GLQLLCEGLLDPQCRLEKLQLEYCSLSAASC---------  159 (461)
T ss_dssp             ECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGH---------
T ss_pred             EccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchH-HHHHHHHHHhcCCCcceEEECCCCCCCHHHH---------
Confidence            999999883    2344 688899999999999987622 1111     1235679999999887653211         


Q ss_pred             cccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhh----ccccceeeeecccCcCCC----CCcCcc
Q 048657          145 FQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE----NNTKLIQLSVVNDSLAGP----FRLPIH  216 (456)
Q Consensus       145 ~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~l~  216 (456)
                                     ..++..+..+++|+.|++++|.+.+.....+..    ..+.|++|++++|.+...    ++..+.
T Consensus       160 ---------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  224 (461)
T 1z7x_W          160 ---------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA  224 (461)
T ss_dssp             ---------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH
T ss_pred             ---------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH
Confidence                           124566778899999999999887655544433    355999999999987763    344456


Q ss_pred             CCccccEEeCCCCccCCCCchh----hhccCCcceEEEccCCccCCC----ccccccCCCCCcEEeccCCcCCCcccchh
Q 048657          217 SHKQLRLLDISTNNFRGHIPVE----IGDVLPSLYVFNNSMNALDGS----IPSSFGNMKFLQILDLSNNHLTGEIPEHL  288 (456)
Q Consensus       217 ~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~  288 (456)
                      .+++|++|++++|.+.+.....    +...+++|+.+++++|.+...    ++..+..+++|++|++++|.+.+..+..+
T Consensus       225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            7788888988888766322211    111245666666666655532    34445556666666666665542222111


Q ss_pred             h----cCCCcccEEEccCCcccccc----cccccccccccEEEccCccccccccccccC-----CCCCcEEEcCCCcCcc
Q 048657          289 A----VGCVNLESLALSNNNLEGHM----FSRNFNLANLKLLQLEGNRFVGEIPQSLSK-----CSSLEGLHLNNNSLSG  355 (456)
Q Consensus       289 ~----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~  355 (456)
                      .    ...++|++|++++|.+++..    +..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            1    11235555555555544321    122233344555555554443222221111     3444444444444443


Q ss_pred             ----ccCccccCCCCCcEEEcCCCccc
Q 048657          356 ----RIPRWLGNLTWLQYIIMPNNHLE  378 (456)
Q Consensus       356 ----~~~~~~~~~~~L~~L~l~~~~~~  378 (456)
                          .++..+..+++|++|++++|.++
T Consensus       385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          385 SSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hhHHHHHHHHHhCCCccEEECCCCCCC
Confidence                33334444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.7e-28  Score=225.08  Aligned_cols=302  Identities=17%  Similarity=0.186  Sum_probs=163.8

Q ss_pred             chhhhHHhhcCC-----CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccc
Q 048657            9 TSFLQIIGESMP-----SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGS   83 (456)
Q Consensus         9 ~~~~~~~~~~~~-----~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~   83 (456)
                      +.+|..+...||     ++++++++++.++.++. .+  .++|++|++++|.+.+..+.++.++++|++|++++|.++ .
T Consensus        17 ~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~   92 (332)
T 2ft3_A           17 DSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-K   92 (332)
T ss_dssp             --------CCCCSSCEEETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-E
T ss_pred             ccCCCcccCCCCCCCcccCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-c
Confidence            345544444343     57777777777666664 22  256777777777776555666777777777777777776 4


Q ss_pred             cCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCch
Q 048657           84 ISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFP  163 (456)
Q Consensus        84 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  163 (456)
                      +....+.++++|++|++++|.+. ..+....   ++|++|++++|.+...                            .+
T Consensus        93 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~----------------------------~~  140 (332)
T 2ft3_A           93 IHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKV----------------------------PK  140 (332)
T ss_dssp             ECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCC----------------------------CS
T ss_pred             cCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCcc----------------------------CH
Confidence            43336666777777777776654 2221111   4555555554443210                            01


Q ss_pred             HHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccC
Q 048657          164 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVL  243 (456)
Q Consensus       164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  243 (456)
                      ..+..+++|+.|++++|.+...                       ...+..+..+ +|+.|++++|.+. .+|....   
T Consensus       141 ~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---  192 (332)
T 2ft3_A          141 GVFSGLRNMNCIEMGGNPLENS-----------------------GFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---  192 (332)
T ss_dssp             GGGSSCSSCCEEECCSCCCBGG-----------------------GSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---
T ss_pred             hHhCCCccCCEEECCCCccccC-----------------------CCCcccccCC-ccCEEECcCCCCC-ccCcccc---
Confidence            1233344444444444433210                       1222233333 5666666666655 2333221   


Q ss_pred             CcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEE
Q 048657          244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQ  323 (456)
Q Consensus       244 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  323 (456)
                      ++|+.+++++|.+.+..+..+.                         .+++|++|++++|.+.+.....+..+++|+.|+
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~-------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  247 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLL-------------------------RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH  247 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSST-------------------------TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCHHHhc-------------------------CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence            3444444444444333333333                         445555555555555544444555666677777


Q ss_pred             ccCccccccccccccCCCCCcEEEcCCCcCccccCccccC------CCCCcEEEcCCCccc--ccCchhccCCCCCCeEe
Q 048657          324 LEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGN------LTWLQYIIMPNNHLE--GLIPVEFCQLDSLQILD  395 (456)
Q Consensus       324 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~  395 (456)
                      +++|.+. .+|..+..+++|++|++++|.+++..+..|..      ..+|+.|++++|++.  ...+..|..+++|+.++
T Consensus       248 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~  326 (332)
T 2ft3_A          248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ  326 (332)
T ss_dssp             CCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred             CCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence            7777666 55666677777777777777776555555543      356788888888775  56667778888888888


Q ss_pred             CcCCc
Q 048657          396 ISDNN  400 (456)
Q Consensus       396 l~~~~  400 (456)
                      +++|+
T Consensus       327 l~~n~  331 (332)
T 2ft3_A          327 FGNYK  331 (332)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            88774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.4e-27  Score=218.84  Aligned_cols=81  Identities=23%  Similarity=0.300  Sum_probs=35.5

Q ss_pred             CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657           21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML  100 (456)
Q Consensus        21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l  100 (456)
                      ++++++++++.++.++. .+.  +++++|++++|.+++..+..+.++++|++|++++|.++ .+....+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~lp~-~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK-DLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCSCCC-SCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccccCc-cCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEEC
Confidence            34444444444444442 111  34444455444444333334444444444444444444 222224444444444444


Q ss_pred             CCcee
Q 048657          101 SNNHF  105 (456)
Q Consensus       101 ~~~~~  105 (456)
                      ++|.+
T Consensus       108 s~n~l  112 (330)
T 1xku_A          108 SKNQL  112 (330)
T ss_dssp             CSSCC
T ss_pred             CCCcC
Confidence            44443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=8.3e-31  Score=260.13  Aligned_cols=430  Identities=14%  Similarity=0.061  Sum_probs=224.7

Q ss_pred             hhHHhhcCCCccEEeccCCC-CC---Ccc-----------cccccCCCCCcEEEcccCcccccchhhhhc-CCC-CcEEe
Q 048657           12 LQIIGESMPSLKYLSLSDSN-SS---RIL-----------DRGLCSLVHLQELYIDNNDLRGSLPWCLAN-MTS-LRILD   74 (456)
Q Consensus        12 ~~~~~~~~~~L~~L~L~~~~-~~---~~~-----------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~   74 (456)
                      +..+..++++|++|+++++. +.   .++           ......+++|++|++++|.+++..+..+.. +++ |++|+
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            34444449999999998865 11   111           011227899999999999888776777766 444 99999


Q ss_pred             ccCCc-ccc-ccCCCCCcCCCCccEEEcCCceeeecc---CCCcccccccceEEeccCcccccccccCcCC-CCCccccc
Q 048657           75 VSSNQ-LTG-SISSSPLVHLTSIEELMLSNNHFQIPI---SLEPFFNHSRLKFFYAENNQINAEITQSHSL-IPPKFQLS  148 (456)
Q Consensus        75 l~~~~-i~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~L~  148 (456)
                      +++|. ++. .+.. ....+++|++|++++|.+....   .......+++|+.|+++++.+.......+.. ...+.+|+
T Consensus       145 L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          145 LDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             CcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            99986 221 1121 2347899999999999876221   1123456889999999988775221111110 11233556


Q ss_pred             eeeccCCCCCCCCchHHhhcCCCccEEEecCcccc---cccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEe
Q 048657          149 RLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMN---GEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLD  225 (456)
Q Consensus       149 ~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  225 (456)
                      .|++..+...  .++..+..+++|+.++++.....   .... .....+++|+.+.+.++. ...++..+..+++|++|+
T Consensus       224 ~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          224 SVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKY-MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             EEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSS-SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEE
T ss_pred             EEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHH-HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEe
Confidence            6665442221  24455555666666666542211   0000 112344555555555431 222333445556666666


Q ss_pred             CCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccC-----------CcCCCcccchhhcCCCc
Q 048657          226 ISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-----------NHLTGEIPEHLAVGCVN  294 (456)
Q Consensus       226 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~l~~~~~~~~~~~~~~  294 (456)
                      +++|.+.+.........+++|+.|++..+.....++.....+++|++|++++           +.+++.....+...+++
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE  379 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence            6666544322222233456666666652211112233334556666666663           23332222222334566


Q ss_pred             ccEEEccCCcccccccccccc-cccccEEEcc----Ccccccc-----ccccccCCCCCcEEEcCCCc--CccccCcccc
Q 048657          295 LESLALSNNNLEGHMFSRNFN-LANLKLLQLE----GNRFVGE-----IPQSLSKCSSLEGLHLNNNS--LSGRIPRWLG  362 (456)
Q Consensus       295 L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~  362 (456)
                      |++|++..+.+++.....+.. +++|+.|+++    .+.+++.     .+..+..+++|++|+++.|.  +++..+..+.
T Consensus       380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~  459 (592)
T 3ogk_B          380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG  459 (592)
T ss_dssp             CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred             CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence            666666555555444444433 5666666664    3334321     22224456666666665432  3433333332


Q ss_pred             -CCCCCcEEEcCCCccccc-CchhccCCCCCCeEeCcCCccCCCCCccc--ccccccEEEccCcccCCCCCcccccCCCc
Q 048657          363 -NLTWLQYIIMPNNHLEGL-IPVEFCQLDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNMLHGQLKRGTFFNCSS  438 (456)
Q Consensus       363 -~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  438 (456)
                       .+++|+.|++++|.+++. .+..+..+++|++|++++|.+++.....+  .+++|++|++++|++++.........+|.
T Consensus       460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~  539 (592)
T 3ogk_B          460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY  539 (592)
T ss_dssp             HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred             HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence             356666666666666542 22334556666666666666543222211  24566666666666543322232334555


Q ss_pred             ceEEEccC
Q 048657          439 LVTLDLSY  446 (456)
Q Consensus       439 L~~L~l~~  446 (456)
                      ++...+..
T Consensus       540 l~~~~~~~  547 (592)
T 3ogk_B          540 WNIELIPS  547 (592)
T ss_dssp             EEEEEECC
T ss_pred             cEEEEecC
Confidence            55544443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=5.6e-29  Score=225.75  Aligned_cols=251  Identities=25%  Similarity=0.354  Sum_probs=163.7

Q ss_pred             cceeeeecccCcCC--CCCcCccCCccccEEeCCC-CccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657          196 KLIQLSVVNDSLAG--PFRLPIHSHKQLRLLDIST-NNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  272 (456)
Q Consensus       196 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  272 (456)
                      +++.|+++++.+.+  .++..+..+++|++|++++ +.+.+.+|..+.. +++|++|+++.|.+.+.+|..+..+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            44455555555444  4445555666666666663 5555555555443 666666666666666566666667777777


Q ss_pred             EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccc-cccEEEccCccccccccccccCCCCCcEEEcCCC
Q 048657          273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLA-NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN  351 (456)
Q Consensus       273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  351 (456)
                      |++++|.+.+.++..+ ..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..|..+..++ |++|++++|
T Consensus       130 L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            7777776664444443 3566777777777776655555566665 677777777777666666666665 777777777


Q ss_pred             cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCc
Q 048657          352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKR  430 (456)
Q Consensus       352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~  430 (456)
                      .+++..+..+..+++|+.|++++|.+++.++. +..+++|++|++++|++++..+..+. .++|++|++++|.+.+.+|.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            77666667777777777777777777654433 56667777777777777755555443 56777777777777666666


Q ss_pred             ccccCCCcceEEEccCcc-cCCC
Q 048657          431 GTFFNCSSLVTLDLSYNR-LNGS  452 (456)
Q Consensus       431 ~~~~~~~~L~~L~l~~~~-l~~~  452 (456)
                      .  ..+++|+.+++++|+ ++|.
T Consensus       287 ~--~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          287 G--GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             S--TTGGGSCGGGTCSSSEEEST
T ss_pred             C--ccccccChHHhcCCCCccCC
Confidence            4  567777777777776 6553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.2e-30  Score=258.98  Aligned_cols=403  Identities=14%  Similarity=0.059  Sum_probs=280.7

Q ss_pred             hhHHhhcCCCccEEeccCCCCCCcccccccC-CCC-CcEEEcccCc-ccc-cchhhhhcCCCCcEEeccCCccccc----
Q 048657           12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCS-LVH-LQELYIDNND-LRG-SLPWCLANMTSLRILDVSSNQLTGS----   83 (456)
Q Consensus        12 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~i~~~----   83 (456)
                      ...++..+++|++|+|++|.+++.....+.. ++. |++|++++|. +.. .++.....+++|++|++++|.+++.    
T Consensus       104 l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~  183 (592)
T 3ogk_B          104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW  183 (592)
T ss_dssp             HHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred             HHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence            3445544999999999999877655555655 445 9999999986 332 2334445899999999999987633    


Q ss_pred             cCCCCCcCCCCccEEEcCCceeee---ccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCC--C
Q 048657           84 ISSSPLVHLTSIEELMLSNNHFQI---PISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYE--D  158 (456)
Q Consensus        84 ~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--~  158 (456)
                      ++. ....+++|++|++++|.+..   ......+..+++|+.|++++|.+....    ..+....+|+.+++.....  .
T Consensus       184 l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~  258 (592)
T 3ogk_B          184 LHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV----GFFKAAANLEEFCGGSLNEDIG  258 (592)
T ss_dssp             HHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH----HHHHHCTTCCEEEECBCCCCTT
T ss_pred             HHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH----HHHhhhhHHHhhcccccccccc
Confidence            222 34578999999999998751   122234457899999999998775422    1123445888888854322  1


Q ss_pred             CCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCC-cCccCCccccEEeCCCCccCCCCch
Q 048657          159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFR-LPIHSHKQLRLLDISTNNFRGHIPV  237 (456)
Q Consensus       159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~  237 (456)
                      .......+..+++|+.+++.++.. ..++ .....+++|++|++++|.+..... ..+..+++|+.|++. +.+.+....
T Consensus       259 ~~~~~~~l~~~~~L~~L~l~~~~~-~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~  335 (592)
T 3ogk_B          259 MPEKYMNLVFPRKLCRLGLSYMGP-NEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLE  335 (592)
T ss_dssp             CTTSSSCCCCCTTCCEEEETTCCT-TTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHH
T ss_pred             hHHHHHHhhccccccccCccccch-hHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHH
Confidence            234445667789999999987532 2333 345789999999999998553222 235788999999998 444433344


Q ss_pred             hhhccCCcceEEEccC-----------CccCCC-ccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEcc----
Q 048657          238 EIGDVLPSLYVFNNSM-----------NALDGS-IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS----  301 (456)
Q Consensus       238 ~~~~~~~~L~~l~l~~-----------~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~----  301 (456)
                      .+...+++|+.|+++.           +.+++. +......+++|++|+++.+.+++.....+...+++|++|++.    
T Consensus       336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~  415 (592)
T 3ogk_B          336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR  415 (592)
T ss_dssp             HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred             HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence            4555689999999994           344432 233345699999999988888765555555558999999996    


Q ss_pred             CCccccc-----ccccccccccccEEEccCcc--ccccccccc-cCCCCCcEEEcCCCcCccc-cCccccCCCCCcEEEc
Q 048657          302 NNNLEGH-----MFSRNFNLANLKLLQLEGNR--FVGEIPQSL-SKCSSLEGLHLNNNSLSGR-IPRWLGNLTWLQYIIM  372 (456)
Q Consensus       302 ~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l  372 (456)
                      .+.+++.     ....+..+++|+.|+++.|.  +++.....+ ..+++|++|++++|.+++. .+..+..+++|++|++
T Consensus       416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  495 (592)
T 3ogk_B          416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM  495 (592)
T ss_dssp             CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred             CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence            4566653     22335568999999997654  544333333 4589999999999998863 4556678999999999


Q ss_pred             CCCccccc-CchhccCCCCCCeEeCcCCccCCCCCcccc--cccccEEEccCc
Q 048657          373 PNNHLEGL-IPVEFCQLDSLQILDISDNNISGSLPACFH--PLSIKQVHLSKN  422 (456)
Q Consensus       373 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~L~~l~l~~~  422 (456)
                      ++|.+++. .+..+..+++|+.|++++|+++......+.  .+.+....+..+
T Consensus       496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             ESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             cCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            99998654 334446789999999999998876544433  455554444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.2e-27  Score=217.51  Aligned_cols=270  Identities=21%  Similarity=0.226  Sum_probs=221.4

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  249 (456)
                      ++++.|+++++.+.+.. ...+..+++|++|++++|.+....+..++.+++|++|++++|.+. .+|....   ++|+.+
T Consensus        52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L  126 (330)
T 1xku_A           52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQEL  126 (330)
T ss_dssp             TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEE
T ss_pred             CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEE
Confidence            57888999988877443 333578889999999999888877888899999999999999887 5665543   699999


Q ss_pred             EccCCccCCCccccccCCCCCcEEeccCCcCCC-cccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcc
Q 048657          250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG-EIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNR  328 (456)
Q Consensus       250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  328 (456)
                      +++.|.+.+..+..+..+++|+.|++++|.+.. ......+..+++|++|++++|.+.......   .++|++|++++|.
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~  203 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNK  203 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSC
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCc
Confidence            999999887777788999999999999998752 133344557899999999999988644322   3899999999999


Q ss_pred             ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcc
Q 048657          329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPAC  408 (456)
Q Consensus       329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  408 (456)
                      +.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ ..|..+..+++|+.|++++|++++.....
T Consensus       204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~  282 (330)
T 1xku_A          204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  282 (330)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence            98777888999999999999999998777778999999999999999998 56778899999999999999999887666


Q ss_pred             cc-------cccccEEEccCcccCC-CCCcccccCCCcceEEEccCcc
Q 048657          409 FH-------PLSIKQVHLSKNMLHG-QLKRGTFFNCSSLVTLDLSYNR  448 (456)
Q Consensus       409 ~~-------~~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~  448 (456)
                      +.       ..+++.+++++|.+.. .++...|..+++++.+++++|+
T Consensus       283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            53       3578999999999842 3555668889999999999884

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.5e-28  Score=222.88  Aligned_cols=234  Identities=29%  Similarity=0.444  Sum_probs=212.5

Q ss_pred             ccccEEeCCCCccCC--CCchhhhccCCcceEEEccC-CccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657          219 KQLRLLDISTNNFRG--HIPVEIGDVLPSLYVFNNSM-NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL  295 (456)
Q Consensus       219 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L  295 (456)
                      .+++.|+++++.+.+  .+|..+.. +++|+.|++++ +.+.+.+|..+..+++|++|++++|.+.+.++..+ ..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCC
Confidence            579999999999987  67777665 89999999995 88888899999999999999999999986666654 479999


Q ss_pred             cEEEccCCcccccccccccccccccEEEccCccccccccccccCCC-CCcEEEcCCCcCccccCccccCCCCCcEEEcCC
Q 048657          296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCS-SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN  374 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  374 (456)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..++ .|++|++++|.+++..|..+..++ |+.|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            9999999999988888889999999999999999988999999998 999999999999988999999887 99999999


Q ss_pred             CcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657          375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                      |.+.+..+..+..+++|+.|++++|.+++..+.....++|++|++++|.+.+.+|.. |..+++|+.|++++|++++++|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccccCC
Confidence            999988899999999999999999999987777556889999999999998777776 8899999999999999999999


Q ss_pred             CC
Q 048657          455 DW  456 (456)
Q Consensus       455 ~~  456 (456)
                      ++
T Consensus       286 ~~  287 (313)
T 1ogq_A          286 QG  287 (313)
T ss_dssp             CS
T ss_pred             CC
Confidence            63

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.6e-27  Score=218.49  Aligned_cols=287  Identities=25%  Similarity=0.362  Sum_probs=195.0

Q ss_pred             CCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEe
Q 048657           45 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY  124 (456)
Q Consensus        45 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  124 (456)
                      ++++++++++.++ ..|..+.  ++|++|++++|.++ .++...+.++++|++|++++|.+. ...+..+..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            5777888777776 4454443  57777888877777 555446777777777777777665 23334444555555555


Q ss_pred             ccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecc
Q 048657          125 AENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVN  204 (456)
Q Consensus       125 l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  204 (456)
                      +++|.+                                                    . .++....             
T Consensus       109 L~~n~l----------------------------------------------------~-~l~~~~~-------------  122 (332)
T 2ft3_A          109 ISKNHL----------------------------------------------------V-EIPPNLP-------------  122 (332)
T ss_dssp             CCSSCC----------------------------------------------------C-SCCSSCC-------------
T ss_pred             CCCCcC----------------------------------------------------C-ccCcccc-------------
Confidence            554443                                                    2 1111100             


Q ss_pred             cCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccC--CCccccccCCCCCcEEeccCCcCCC
Q 048657          205 DSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALD--GSIPSSFGNMKFLQILDLSNNHLTG  282 (456)
Q Consensus       205 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~l~~  282 (456)
                                    ++|++|++++|.+. .++......+++|+.+++++|.+.  +..+..+..+ +|++|++++|.+. 
T Consensus       123 --------------~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-  185 (332)
T 2ft3_A          123 --------------SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-  185 (332)
T ss_dssp             --------------TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred             --------------ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence                          23333333333333 222222222444444444444442  1334455555 7888889888887 


Q ss_pred             cccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCcccc
Q 048657          283 EIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLG  362 (456)
Q Consensus       283 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  362 (456)
                      .++...   .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+.
T Consensus       186 ~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          186 GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence            566543   378999999999998877778889999999999999998777778999999999999999998 7888899


Q ss_pred             CCCCCcEEEcCCCcccccCchhccC------CCCCCeEeCcCCccC--CCCCcccc-cccccEEEccCcc
Q 048657          363 NLTWLQYIIMPNNHLEGLIPVEFCQ------LDSLQILDISDNNIS--GSLPACFH-PLSIKQVHLSKNM  423 (456)
Q Consensus       363 ~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~l~--~~~~~~~~-~~~L~~l~l~~~~  423 (456)
                      .+++|+.|++++|.+++..+..|..      .++|+.|++++|++.  ...+..+. .+.|+.+++++|+
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            9999999999999999877777765      367999999999987  44444444 6789999999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=3.3e-30  Score=255.92  Aligned_cols=429  Identities=13%  Similarity=0.072  Sum_probs=265.3

Q ss_pred             hhhHHhhcCCCccEEeccCCC-CCCcc--------------cccccCCCCCcEEEcccCcccccchhhhh-cCCCCcEEe
Q 048657           11 FLQIIGESMPSLKYLSLSDSN-SSRIL--------------DRGLCSLVHLQELYIDNNDLRGSLPWCLA-NMTSLRILD   74 (456)
Q Consensus        11 ~~~~~~~~~~~L~~L~L~~~~-~~~~~--------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~   74 (456)
                      .+..+..++++|++|+++++. +.+..              ......+++|++|++++|.+++..+..+. .+++|++|+
T Consensus        57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~  136 (594)
T 2p1m_B           57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV  136 (594)
T ss_dssp             CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred             CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence            344444459999999999876 32221              11234688999999999998877777775 689999999


Q ss_pred             ccCC-ccccc-cCCCCCcCCCCccEEEcCCceeeecc---CCCcccccccceEEeccCcccccccccCcCC-CCCccccc
Q 048657           75 VSSN-QLTGS-ISSSPLVHLTSIEELMLSNNHFQIPI---SLEPFFNHSRLKFFYAENNQINAEITQSHSL-IPPKFQLS  148 (456)
Q Consensus        75 l~~~-~i~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~L~  148 (456)
                      +++| .+++. ++. ...++++|++|++++|.+....   .......+++|+.|+++++. .......+.. ...+.+|+
T Consensus       137 L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~  214 (594)
T 2p1m_B          137 LSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLK  214 (594)
T ss_dssp             EESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCC
T ss_pred             CCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCc
Confidence            9998 55522 332 3457899999999999876322   11223367899999998876 1111111111 11245788


Q ss_pred             eeeccCCCCCCCCchHHhhcCCCccEEEecCccc-------ccccchhhhhccccceeee-ecccCcCCCCCcCccCCcc
Q 048657          149 RLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKM-------NGEFPTWLLENNTKLIQLS-VVNDSLAGPFRLPIHSHKQ  220 (456)
Q Consensus       149 ~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~~~~  220 (456)
                      .|++..+.. ...++..+..+++|+.++++.+..       . .++. .+.++++|+.+. +.... ...++..+..+++
T Consensus       215 ~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~  290 (594)
T 2p1m_B          215 SLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAV-PAYLPAVYSVCSR  290 (594)
T ss_dssp             EEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCC-GGGGGGGHHHHTT
T ss_pred             EEecCCCCc-HHHHHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccc-hhhHHHHHHhhCC
Confidence            888855422 223667777788888888765431       1 1111 235677777772 22211 1122223345678


Q ss_pred             ccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCC-CccccccCCCCCcEEeccC---------CcCCCcccchhhc
Q 048657          221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSN---------NHLTGEIPEHLAV  290 (456)
Q Consensus       221 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~---------~~l~~~~~~~~~~  290 (456)
                      |++|++++|.+.+.....+...+++|+.|++.++ +.. .++.....+++|++|++.+         +.+++.....+..
T Consensus       291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~  369 (594)
T 2p1m_B          291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM  369 (594)
T ss_dssp             CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred             CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence            8888888887653333333445788888888876 322 2233334578888888833         2343222233333


Q ss_pred             CCCcccEEEccCCccccccccccc-ccccccEEEcc--C----ccccc-----cccccccCCCCCcEEEcCCCcCccccC
Q 048657          291 GCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLE--G----NRFVG-----EIPQSLSKCSSLEGLHLNNNSLSGRIP  358 (456)
Q Consensus       291 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~  358 (456)
                      .+++|++|.+..+.+++.....+. .+++|+.|+++  +    +.++.     ..+..+..+++|++|++++ .+++..+
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            578888888877777765444443 47888888888  3    33331     1122256678888888877 5655555


Q ss_pred             ccccC-CCCCcEEEcCCCcccccCchhc-cCCCCCCeEeCcCCccCCCCCccc--ccccccEEEccCcccCCCCCccccc
Q 048657          359 RWLGN-LTWLQYIIMPNNHLEGLIPVEF-CQLDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNMLHGQLKRGTFF  434 (456)
Q Consensus       359 ~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~  434 (456)
                      ..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++.....+  .+++|++|++++|.++.........
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  528 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ  528 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence            55554 7888888888888865544444 567888888888888754333222  2578888888888874222222224


Q ss_pred             CCCcceEEEccCc
Q 048657          435 NCSSLVTLDLSYN  447 (456)
Q Consensus       435 ~~~~L~~L~l~~~  447 (456)
                      .+|.++...+..+
T Consensus       529 ~lp~l~i~~~~~~  541 (594)
T 2p1m_B          529 KMPKLNVEVIDER  541 (594)
T ss_dssp             HCTTEEEEEECSS
T ss_pred             hCCCCEEEEecCC
Confidence            5677766655544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=5.4e-29  Score=247.23  Aligned_cols=421  Identities=11%  Similarity=0.054  Sum_probs=284.7

Q ss_pred             cEEeccCCCCCCcccccccCCCCCcEEEcccCcccccc---------------hhhhhcCCCCcEEeccCCccccccCCC
Q 048657           23 KYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL---------------PWCLANMTSLRILDVSSNQLTGSISSS   87 (456)
Q Consensus        23 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---------------~~~~~~l~~L~~L~l~~~~i~~~~~~~   87 (456)
                      +.+++.++... .+...+.++++|++|+++++......               +.....+++|++|++++|.+++.... 
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-  123 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-  123 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-
Confidence            46666665432 33346778999999999997532111               12245689999999999988754443 


Q ss_pred             CCc-CCCCccEEEcCCc-eeeeccCCCcccccccceEEeccCcccccccccCcCCC-CCccccceeeccCCC--CCCCCc
Q 048657           88 PLV-HLTSIEELMLSNN-HFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLI-PPKFQLSRLSLSSGY--EDGVTF  162 (456)
Q Consensus        88 ~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~--~~~~~~  162 (456)
                      .+. .+++|++|++++| .+...........+++|++|++++|.+.+.....+... ....+|+.|++..+.  .....+
T Consensus       124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (594)
T 2p1m_B          124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL  203 (594)
T ss_dssp             HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred             HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence            343 6899999999999 44422223334578999999999998766544433333 356689999997654  111223


Q ss_pred             hHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcC------CCCCcCccCCccccEE-eCCCCccCCCC
Q 048657          163 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLA------GPFRLPIHSHKQLRLL-DISTNNFRGHI  235 (456)
Q Consensus       163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~L-~l~~~~~~~~~  235 (456)
                      ......+++|+.|++++|...+.+ ......+++|+++.+..+...      ..+...+..+++|+.+ .+...... .+
T Consensus       204 ~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~-~l  281 (594)
T 2p1m_B          204 ERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA-YL  281 (594)
T ss_dssp             HHHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG-GG
T ss_pred             HHHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh-hH
Confidence            444456899999999988432233 334578899999997665321      0112245778888888 44432211 22


Q ss_pred             chhhhccCCcceEEEccCCccCCC-ccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccC---------Ccc
Q 048657          236 PVEIGDVLPSLYVFNNSMNALDGS-IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN---------NNL  305 (456)
Q Consensus       236 ~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~---------~~~  305 (456)
                      +. ....+++|+.|+++.|.+.+. +...+..+++|++|+++++ +.+.....+...+++|++|++.+         +.+
T Consensus       282 ~~-~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l  359 (594)
T 2p1m_B          282 PA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL  359 (594)
T ss_dssp             GG-GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred             HH-HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence            22 222478999999999986543 2334668999999999988 43233334444689999999943         345


Q ss_pred             ccccccccc-ccccccEEEccCcccccccccccc-CCCCCcEEEcC--C----CcCcc-----ccCccccCCCCCcEEEc
Q 048657          306 EGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLS-KCSSLEGLHLN--N----NSLSG-----RIPRWLGNLTWLQYIIM  372 (456)
Q Consensus       306 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l  372 (456)
                      ++.....+. .+++|+.|.+..+.+++.....+. .+++|+.|+++  +    +.+++     .++..+..+++|+.|++
T Consensus       360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L  439 (594)
T 2p1m_B          360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL  439 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred             CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence            443333333 489999998888888755444444 58999999999  3    34542     12223667899999999


Q ss_pred             CCCcccccCchhccC-CCCCCeEeCcCCccCCCCCccc--ccccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657          373 PNNHLEGLIPVEFCQ-LDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL  449 (456)
Q Consensus       373 ~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  449 (456)
                      ++ .+++..+..+.. +++|+.|++++|.+++.....+  .+++|++|++++|.+++.........+++|+.|++++|++
T Consensus       440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            88 666554555554 8899999999999875544333  2789999999999985444444456789999999999988


Q ss_pred             C
Q 048657          450 N  450 (456)
Q Consensus       450 ~  450 (456)
                      +
T Consensus       519 ~  519 (594)
T 2p1m_B          519 S  519 (594)
T ss_dssp             B
T ss_pred             C
Confidence            5

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2e-25  Score=202.24  Aligned_cols=228  Identities=23%  Similarity=0.251  Sum_probs=107.4

Q ss_pred             ccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCC--CchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657          195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGH--IPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  272 (456)
Q Consensus       195 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  272 (456)
                      +.+++|+++++.+.......++.+++|+.|++++|.+...  .+..... +++|+.|++++|.+. .++..+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVI-TMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence            3555555555555544433445555555555555554311  1222222 455555555555444 23334445555555


Q ss_pred             EeccCCcCCCcccc-hhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccc-cccccccCCCCCcEEEcCC
Q 048657          273 LDLSNNHLTGEIPE-HLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG-EIPQSLSKCSSLEGLHLNN  350 (456)
Q Consensus       273 L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~  350 (456)
                      |++++|.+. .++. ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++
T Consensus       106 L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          106 LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            555555444 2221 223344555555555555444444444444555555555555443 2344444455555555555


Q ss_pred             CcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-c-ccccEEEccCcccC
Q 048657          351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-P-LSIKQVHLSKNMLH  425 (456)
Q Consensus       351 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~-~~L~~l~l~~~~~~  425 (456)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+. . ++|++|++++|.+.
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            555444444444555555555555555444444444455555555555555444433332 1 24555555554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=4e-25  Score=204.36  Aligned_cols=167  Identities=19%  Similarity=0.189  Sum_probs=85.0

Q ss_pred             ccCCccccEEeCCCCc-cCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCC
Q 048657          215 IHSHKQLRLLDISTNN-FRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV  293 (456)
Q Consensus       215 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  293 (456)
                      +..+++|+.|++++|. +. .++......+++|+.+++++|.+.+..+..+..+++|++|++++|.+. .++......++
T Consensus       145 ~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~  222 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS  222 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTT
T ss_pred             hccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcc
Confidence            3444555555555542 22 222222223566666666666665555666667777777777777765 55555444567


Q ss_pred             cccEEEccCCccccccccccc---ccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEE
Q 048657          294 NLESLALSNNNLEGHMFSRNF---NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI  370 (456)
Q Consensus       294 ~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  370 (456)
                      +|++|++++|.+.+.....+.   ....++.+++.++.+.+.                   .+. .+|..+..+++|++|
T Consensus       223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L  282 (353)
T 2z80_A          223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLEL  282 (353)
T ss_dssp             TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEE
T ss_pred             cccEEECCCCccccccccccccccccchhhccccccccccCc-------------------chh-hhHHHHhcccCCCEE
Confidence            777777777766653322211   123333444443333221                   000 233444555555555


Q ss_pred             EcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657          371 IMPNNHLEGLIPVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       371 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      ++++|.++..+...|..+++|++|++++|++.+
T Consensus       283 ~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            555555553333334555555555555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.4e-25  Score=203.23  Aligned_cols=230  Identities=26%  Similarity=0.286  Sum_probs=180.0

Q ss_pred             ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCC--CccccccCCCCCcEEeccCCcCCCcccchhhcCCCccc
Q 048657          219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG--SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLE  296 (456)
Q Consensus       219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~  296 (456)
                      ++++.|+++++.+. .+|...+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.+. .++..+ ..+++|+
T Consensus        28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~-~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF-LGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEE-ETCTTCC
T ss_pred             CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhc-CCCCCCC
Confidence            67888888888887 6666655568888888888887763  23556667888888998888876 555543 4688888


Q ss_pred             EEEccCCccccccc-ccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc-ccCccccCCCCCcEEEcCC
Q 048657          297 SLALSNNNLEGHMF-SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG-RIPRWLGNLTWLQYIIMPN  374 (456)
Q Consensus       297 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~  374 (456)
                      +|++++|.+.+... ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            89888888876554 456778888888888888876777778888888899998888875 5777888888889999988


Q ss_pred             CcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCC-cceEEEccCcccCCC
Q 048657          375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCS-SLVTLDLSYNRLNGS  452 (456)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~  452 (456)
                      |.+++..+..+..+++|+.|++++|.+++..+..+. .++|+.|++++|.+.+..+.. +..++ +|+.|++++|+++..
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEECS
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCeecc
Confidence            888877778888888888999988888876664444 678888999888887555544 66664 888899988888754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=6e-26  Score=209.93  Aligned_cols=277  Identities=17%  Similarity=0.153  Sum_probs=160.6

Q ss_pred             CccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEE
Q 048657          171 DLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN  250 (456)
Q Consensus       171 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  250 (456)
                      .....+.+++.+. .+|..+   .+++++|+++++.+.......+..+++|+.|++++|.+.+..+..+ ..+++|++|+
T Consensus        32 ~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~  106 (353)
T 2z80_A           32 RNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLD  106 (353)
T ss_dssp             TTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEE
T ss_pred             CCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc-CCCCCCCEEE
Confidence            3334455554443 333322   2356666666666555444456666666666666666653222223 2356666666


Q ss_pred             ccCCccCCCccccccCCCCCcEEeccCCcCCCcccc-hhhcCCCcccEEEccCC-cccccccccccccccccEEEccCcc
Q 048657          251 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE-HLAVGCVNLESLALSNN-NLEGHMFSRNFNLANLKLLQLEGNR  328 (456)
Q Consensus       251 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~  328 (456)
                      +++|.+.+..+..+..+++|++|++++|.+. .++. ..+..+++|++|++++| .+.......+..+++|++|++++|.
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            6666666444444666666777777666665 4444 33445666777777666 3444444555666677777777776


Q ss_pred             ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhc---cCCCCCCeEeCcCCccCCCC
Q 048657          329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF---CQLDSLQILDISDNNISGSL  405 (456)
Q Consensus       329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~  405 (456)
                      +.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+   ...+.++.++++++.+.+..
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            665556666667777777777776653332334446677777777776665433322   23445666666666554321


Q ss_pred             ----Cc-ccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657          406 ----PA-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       406 ----~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                          +. ....++|++|++++|.+. .++...|..+++|+.|++++|++++..|
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                11 112556777777777775 6666666777777777777777776544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=6.9e-25  Score=199.96  Aligned_cols=224  Identities=17%  Similarity=0.172  Sum_probs=148.5

Q ss_pred             ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEE
Q 048657          219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL  298 (456)
Q Consensus       219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  298 (456)
                      +.++.|+++++.+. .+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEE
T ss_pred             cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEE
Confidence            34555555555554 44444443 555555555555554 44555555555555555555555 444433 245555555


Q ss_pred             EccCCcccccccccc---------cccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcE
Q 048657          299 ALSNNNLEGHMFSRN---------FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQY  369 (456)
Q Consensus       299 ~l~~~~~~~~~~~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  369 (456)
                      ++++|...+..+..+         ..+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence            555554443333332         34778888888888777 66777778888888888888877 45666778888888


Q ss_pred             EEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcc
Q 048657          370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR  448 (456)
Q Consensus       370 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  448 (456)
                      |++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. +++|++|++++|.+.+.+|.. +..+++|+.+++..+.
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHL  312 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCGGG
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCHHH
Confidence            88888877777777788888888888888877766665544 678888888888887777776 7778888888887664


Q ss_pred             cC
Q 048657          449 LN  450 (456)
Q Consensus       449 l~  450 (456)
                      +.
T Consensus       313 ~~  314 (328)
T 4fcg_A          313 QA  314 (328)
T ss_dssp             SC
T ss_pred             HH
Confidence            43

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=4.6e-25  Score=197.67  Aligned_cols=251  Identities=22%  Similarity=0.184  Sum_probs=174.3

Q ss_pred             cccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCc-cCCCccccccCCCCCcE
Q 048657          194 NTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA-LDGSIPSSFGNMKFLQI  272 (456)
Q Consensus       194 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~  272 (456)
                      .+++++|+++++.+....+..+..+++|++|++++|.+.+..+..+. .+++|+.++++.|. +....+..+..+++|++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            34666666666666655555667777777777777777633333333 36778888887776 55445667778888888


Q ss_pred             EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCc
Q 048657          273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNS  352 (456)
Q Consensus       273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  352 (456)
                      |++++|.+. .++...+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus       110 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          110 LHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence            888888877 4444444567888888888888877666667778888888888888875555567888888888888888


Q ss_pred             CccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCccc
Q 048657          353 LSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGT  432 (456)
Q Consensus       353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  432 (456)
                      +++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.......+....++.+....+.+....|.. 
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~-  267 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR-  267 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG-
T ss_pred             ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH-
Confidence            8877788888888888888888888877777788888888888888888754333222234455555555555455544 


Q ss_pred             ccC--CCcceEEEccCc
Q 048657          433 FFN--CSSLVTLDLSYN  447 (456)
Q Consensus       433 ~~~--~~~L~~L~l~~~  447 (456)
                      +.+  +..++..++.+|
T Consensus       268 l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          268 LAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             GTTCBGGGSCGGGSCCC
T ss_pred             hCCcChhhcCHHHhccC
Confidence            222  334444444444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2e-24  Score=193.48  Aligned_cols=204  Identities=23%  Similarity=0.191  Sum_probs=95.9

Q ss_pred             cceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCc-ccccccccccccccccEEE
Q 048657          245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN-LEGHMFSRNFNLANLKLLQ  323 (456)
Q Consensus       245 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~  323 (456)
                      +++.++++++.+....+..+..+++|++|++++|.+. .+....+..+++|++|++++|. +....+..+..+++|++|+
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            4444444444444333334444445555555544444 2222222344445555555543 4333334444445555555


Q ss_pred             ccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657          324 LEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       324 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      +++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            55555543334444455555555555555543333444455555555555555544444444455555555555555544


Q ss_pred             CCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657          404 SLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       404 ~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  450 (456)
                      ..+..+. .++|++|++++|.+. .++...+..+++|+.|++++|++.
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCcc
Confidence            4333332 345555555555553 233333455555555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=4.4e-24  Score=203.37  Aligned_cols=226  Identities=26%  Similarity=0.251  Sum_probs=114.3

Q ss_pred             ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEE
Q 048657          219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL  298 (456)
Q Consensus       219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  298 (456)
                      +.++.|++++|.+. .++...+..+++|+.|+++.|.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence            34445555555444 222222223455555555555544434444555555555555555554 4444333445555555


Q ss_pred             EccCCcccccccccccccccccEEEccCcc-ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcc
Q 048657          299 ALSNNNLEGHMFSRNFNLANLKLLQLEGNR-FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHL  377 (456)
Q Consensus       299 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  377 (456)
                      ++++|.+.......+..+++|+.|++++|. +....+..+..+++|++|++++|.++ .+| .+..+++|++|++++|.+
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence            555555554444444555555555555532 22122234555555555555555554 223 245555555555555555


Q ss_pred             cccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657          378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL  449 (456)
Q Consensus       378 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  449 (456)
                      ++..+..|..+++|+.|++++|++++..+..+. +++|+.|++++|.+. .++...|..+++|+.|++++|++
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence            555555555555555555555555554444333 455555555555553 44444455556666666665554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=7.3e-24  Score=202.57  Aligned_cols=227  Identities=25%  Similarity=0.229  Sum_probs=136.7

Q ss_pred             ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEE
Q 048657          219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL  298 (456)
Q Consensus       219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L  298 (456)
                      ++++.|++++|.+.+..+..+ ..+++|+.|+++.|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence            455666666666553222222 23566666666666665544555666666666666666665 5554444456666666


Q ss_pred             EccCCcccccccccccccccccEEEccCcc-ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcc
Q 048657          299 ALSNNNLEGHMFSRNFNLANLKLLQLEGNR-FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHL  377 (456)
Q Consensus       299 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  377 (456)
                      ++++|.+.......+..+++|+.|++++|. +....+..+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcC
Confidence            666666665555555666666666666633 332223345666666777776666653 22 355666677777777766


Q ss_pred             cccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657          378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       378 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  450 (456)
                      ++..+..|..+++|+.|++++|++++..+..+. +++|+.|++++|.+. .++...|..+++|+.|++++|++.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcC
Confidence            666666666666777777777666665555444 556677777777664 455555666677777777776643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=200.42  Aligned_cols=229  Identities=20%  Similarity=0.151  Sum_probs=127.1

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  249 (456)
                      ++++.|+++++.+....+. .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence            4566666666665533322 2355566666666666655555555555666666666666555 3443333335566666


Q ss_pred             EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657          250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF  329 (456)
Q Consensus       250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  329 (456)
                      ++++|.+....+..+..+++|++|+++++...+.++...+..+++|++|++++|.+....  .+..+++|+.|++++|.+
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCcc
Confidence            666665554444455556666666665543222444444445556666666666555322  244555666666666665


Q ss_pred             cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      .+..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            5444555555666666666666655555555555666666666666665555555555566666666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=8.9e-24  Score=188.34  Aligned_cols=209  Identities=23%  Similarity=0.285  Sum_probs=177.9

Q ss_pred             CcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEE
Q 048657          244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQ  323 (456)
Q Consensus       244 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  323 (456)
                      ++++.++++++.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+.....+..+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            46888888888877655557888899999999999887 66655556788999999999998887777788899999999


Q ss_pred             ccCccccccccccccCCCCCcEEEcCCCcCccc-cCccccCCCCCcEEEcCCCcccccCchhccCCCCCC----eEeCcC
Q 048657          324 LEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGR-IPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ----ILDISD  398 (456)
Q Consensus       324 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~  398 (456)
                      +++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+    .|++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            999999866666788999999999999998853 588999999999999999999887777777777777    899999


Q ss_pred             CccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657          399 NNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       399 ~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                      |.+++..+..+...+|++|++++|.+. .++...|..+++|+.|++++|+++...|
T Consensus       187 n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          187 NPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCC
Confidence            999988877777779999999999986 6777778999999999999999998766

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2e-25  Score=202.45  Aligned_cols=248  Identities=19%  Similarity=0.124  Sum_probs=187.8

Q ss_pred             ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccC-CCCchhhh------ccCCcceEEEccCCccCCCccccc-
Q 048657          193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFR-GHIPVEIG------DVLPSLYVFNNSMNALDGSIPSSF-  264 (456)
Q Consensus       193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~l~l~~~~~~~~~~~~l-  264 (456)
                      ..++|+.+++.++.+  .++..+..  .++.|+++++.+. ..++....      ..+++|++|++++|.+.+..|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            444555555655555  23322222  2667777777663 23343332      127889999999999887777766 


Q ss_pred             -cCCCCCcEEeccCCcCCCcccchhhcCC-----CcccEEEccCCcccccccccccccccccEEEccCcccccc--cccc
Q 048657          265 -GNMKFLQILDLSNNHLTGEIPEHLAVGC-----VNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE--IPQS  336 (456)
Q Consensus       265 -~~~~~L~~L~l~~~~l~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~  336 (456)
                       ..+++|++|++++|.+.+. +..+. .+     ++|++|++++|++.+..+..+..+++|++|++++|.+.+.  .+..
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence             8899999999999998844 54332 33     8999999999999988878888999999999999997654  2333


Q ss_pred             c--cCCCCCcEEEcCCCcCcc---ccCccccCCCCCcEEEcCCCcccccCc-hhccCCCCCCeEeCcCCccCCCCCcccc
Q 048657          337 L--SKCSSLEGLHLNNNSLSG---RIPRWLGNLTWLQYIIMPNNHLEGLIP-VEFCQLDSLQILDISDNNISGSLPACFH  410 (456)
Q Consensus       337 ~--~~l~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~  410 (456)
                      +  ..+++|++|++++|.+++   .....+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++..+ ..+.
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP-KGLP  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC-SSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh-hhcc
Confidence            3  789999999999999873   222345678999999999999987664 55667899999999999998544 4333


Q ss_pred             cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657          411 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  451 (456)
Q Consensus       411 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  451 (456)
                       ++|++|++++|++.+ +|.  +..+++|+.|++++|++++
T Consensus       274 -~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCCC
Confidence             899999999999975 444  8889999999999999985

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.7e-23  Score=200.06  Aligned_cols=229  Identities=22%  Similarity=0.177  Sum_probs=149.3

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  249 (456)
                      ++++.|++++|.+.+..+.. +..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence            46777777777766443333 456677777777777766666666667777777777777766 4444444446677777


Q ss_pred             EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657          250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF  329 (456)
Q Consensus       250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  329 (456)
                      ++++|.+....+..+..+++|++|+++++...+.++...+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcC
Confidence            77777666444455666777777777664333355555555666777777777766643  2345666777777777777


Q ss_pred             cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      .+..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            6555666667777777777777766666666667777777777777776666666666677777777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.3e-23  Score=191.50  Aligned_cols=204  Identities=21%  Similarity=0.292  Sum_probs=104.9

Q ss_pred             cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhh------
Q 048657          216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA------  289 (456)
Q Consensus       216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~------  289 (456)
                      ..+++|++|++++|.+. .+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.      
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            33444444444444443 33333322 444444444444444 3344444445555555544443333333221      


Q ss_pred             --cCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCC
Q 048657          290 --VGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWL  367 (456)
Q Consensus       290 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  367 (456)
                        ..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence              13555566666555555 23334555556666666666655 344445556666666666665555555556666666


Q ss_pred             cEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCccc
Q 048657          368 QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNML  424 (456)
Q Consensus       368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~  424 (456)
                      ++|++++|.+.+..|..+..+++|+.|++++|++.+..|..+. .++++.+++..+.+
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            6666666655555555556666666666666655555554443 45556655554433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=4.2e-25  Score=200.80  Aligned_cols=238  Identities=16%  Similarity=0.139  Sum_probs=119.2

Q ss_pred             ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657          193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  272 (456)
Q Consensus       193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  272 (456)
                      .+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+   ...+++|+.|+++.|.+.+     +...++|++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~  103 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIET  103 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEE-----EEECTTCCE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccc-----ccCCCCcCE
Confidence            34445555555554444443444555555555555555442221   2224555555555554432     112355556


Q ss_pred             EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccc-cCCCCCcEEEcCCC
Q 048657          273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSL-SKCSSLEGLHLNNN  351 (456)
Q Consensus       273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~  351 (456)
                      |++++|.+. .++..   .+++|++|++++|.+.+.....+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|
T Consensus       104 L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          104 LHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            666555554 22221   24556666666665555444455555566666666665554333333 24556666666666


Q ss_pred             cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657          352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG  431 (456)
Q Consensus       352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  431 (456)
                      .+++. + ....+++|++|++++|.+++.++ .+..+++|+.|++++|+++..+......++|+.|++++|.+.......
T Consensus       180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             CCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             cCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            55532 2 22235566666666666654332 355556666666666665544333333455666666666554122222


Q ss_pred             cccCCCcceEEEcc
Q 048657          432 TFFNCSSLVTLDLS  445 (456)
Q Consensus       432 ~~~~~~~L~~L~l~  445 (456)
                      .+..+++|+.++++
T Consensus       257 ~~~~~~~L~~l~l~  270 (317)
T 3o53_A          257 FFSKNQRVQTVAKQ  270 (317)
T ss_dssp             HHHTCHHHHHHHHH
T ss_pred             HHhccccceEEECC
Confidence            34555555555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=9.9e-25  Score=198.35  Aligned_cols=224  Identities=21%  Similarity=0.194  Sum_probs=187.5

Q ss_pred             ccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCc
Q 048657          215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN  294 (456)
Q Consensus       215 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  294 (456)
                      +..+++|++|++++|.+.+ ++......+++|+.|++++|.+.+..+  +..+++|++|++++|.+. .++     ..++
T Consensus        30 ~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~  100 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPS  100 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTT
T ss_pred             hccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCC
Confidence            4567899999999999984 444444458999999999999875443  889999999999999887 444     3489


Q ss_pred             ccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccc-cCCCCCcEEEcC
Q 048657          295 LESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWL-GNLTWLQYIIMP  373 (456)
Q Consensus       295 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~  373 (456)
                      |++|++++|.+.+....   .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus       101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            99999999999876544   36889999999999997777788899999999999999987766666 478999999999


Q ss_pred             CCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC-CC
Q 048657          374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN-GS  452 (456)
Q Consensus       374 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~  452 (456)
                      +|.+++..  ....+++|+.|++++|++++.++....+++|+.|++++|.+. .++.. +..+++|+.|++++|+++ +.
T Consensus       178 ~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~-~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          178 YNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             TSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCCBHHH
T ss_pred             CCcCcccc--cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhH-hhcCCCCCEEEccCCCccCcC
Confidence            99998653  333589999999999999987776556889999999999996 67766 888999999999999987 43


Q ss_pred             CC
Q 048657          453 IP  454 (456)
Q Consensus       453 ~p  454 (456)
                      +|
T Consensus       254 ~~  255 (317)
T 3o53_A          254 LR  255 (317)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=7.8e-23  Score=200.31  Aligned_cols=265  Identities=27%  Similarity=0.293  Sum_probs=162.0

Q ss_pred             CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657           21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML  100 (456)
Q Consensus        21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l  100 (456)
                      ++++|+++++.++.++. .+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++ .++.    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~~lp~-~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCSCCCS-CCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcCccCh-hhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence            58888888888887775 333  78888888888887 4444   4678888888888887 5664    5678888888


Q ss_pred             CCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCc
Q 048657          101 SNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI  180 (456)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  180 (456)
                      ++|.+.. .+.    .+++|+.|++++|.+..                             ++.   .+++|+.|++++|
T Consensus       109 s~N~l~~-l~~----~l~~L~~L~L~~N~l~~-----------------------------lp~---~l~~L~~L~Ls~N  151 (622)
T 3g06_A          109 FSNPLTH-LPA----LPSGLCKLWIFGNQLTS-----------------------------LPV---LPPGLQELSVSDN  151 (622)
T ss_dssp             CSCCCCC-CCC----CCTTCCEEECCSSCCSC-----------------------------CCC---CCTTCCEEECCSS
T ss_pred             cCCcCCC-CCC----CCCCcCEEECCCCCCCc-----------------------------CCC---CCCCCCEEECcCC
Confidence            8887762 211    45666666666665431                             010   1245566666555


Q ss_pred             ccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCc
Q 048657          181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI  260 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  260 (456)
                      .+.+ ++.                            .+++|+.|++++|.+. .+|    ..+++|+.|++++|.+.+ +
T Consensus       152 ~l~~-l~~----------------------------~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l  196 (622)
T 3g06_A          152 QLAS-LPA----------------------------LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-L  196 (622)
T ss_dssp             CCSC-CCC----------------------------CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-C
T ss_pred             cCCC-cCC----------------------------ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-C
Confidence            5431 110                            1245556666666555 333    224566666666665553 2


Q ss_pred             cccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCC
Q 048657          261 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC  340 (456)
Q Consensus       261 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  340 (456)
                      +.   ..++|+.|++++|.+. .++.    .+++|++|++++|.++...    ..+++|+.|++++|.++ .+|.   .+
T Consensus       197 ~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~  260 (622)
T 3g06_A          197 PT---LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLT-SLPM---LP  260 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC---CC
T ss_pred             CC---ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCC-cCCc---cc
Confidence            22   2356666777666665 4442    2456677777766665432    24466777777777665 3443   45


Q ss_pred             CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhcc
Q 048657          341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFC  386 (456)
Q Consensus       341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  386 (456)
                      ++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..+..+.
T Consensus       261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            66777777777666 5566666777777777777776655555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=1.5e-22  Score=198.29  Aligned_cols=241  Identities=24%  Similarity=0.263  Sum_probs=179.8

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  249 (456)
                      ++|+.|++++|.+. .++.    .+++|+.|++++|.+.....    .+++|++|++++|.+. .+|.    .+++|+.|
T Consensus        61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT-HLPA----LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCC-CCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCC-CCCC----CCCCcCEE
Confidence            57788888888765 3333    56778888888887764332    5678888888888877 4444    36788888


Q ss_pred             EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657          250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF  329 (456)
Q Consensus       250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  329 (456)
                      ++++|.+.. +|..   +++|++|++++|.+. .++.    .+++|+.|++++|.++...    ..+++|+.|++++|.+
T Consensus       127 ~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l  193 (622)
T 3g06_A          127 WIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQL  193 (622)
T ss_dssp             ECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred             ECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCC
Confidence            888888764 4432   488889999888877 4543    3567888999888887644    3468889999999888


Q ss_pred             cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc
Q 048657          330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF  409 (456)
Q Consensus       330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  409 (456)
                      .+ ++.   ..++|+.|++++|.++ .++.   .+++|+.|++++|.+++. |   ..+++|+.|++++|.++..+.   
T Consensus       194 ~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~lp~---  258 (622)
T 3g06_A          194 AS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTSLPM---  258 (622)
T ss_dssp             SC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC---
T ss_pred             CC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCcCCc---
Confidence            73 443   3478899999998887 4443   247899999999988754 3   456789999999998886544   


Q ss_pred             ccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657          410 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       410 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                      .+++|+.|++++|.+. .+|.. |.++++|+.|++++|++++.+|
T Consensus       259 ~~~~L~~L~Ls~N~L~-~lp~~-l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          259 LPSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CCTTCCEEECCSSCCC-SCCGG-GGGSCTTCEEECCSCCCCHHHH
T ss_pred             ccccCcEEeCCCCCCC-cCCHH-HhhccccCEEEecCCCCCCcCH
Confidence            5678999999999886 67765 8888999999999998886544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=7.7e-24  Score=203.40  Aligned_cols=238  Identities=16%  Similarity=0.133  Sum_probs=145.2

Q ss_pred             ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657          193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  272 (456)
Q Consensus       193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  272 (456)
                      .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+   ...+++|+.|++++|.+.+.     ...++|+.
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL-----LVGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence            34467777777777766666666777777777777776653333   23366777777777665532     12366777


Q ss_pred             EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccccc-CCCCCcEEEcCCC
Q 048657          273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS-KCSSLEGLHLNNN  351 (456)
Q Consensus       273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~  351 (456)
                      |++++|.+. .++..   .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|
T Consensus       104 L~L~~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECcCCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            777777665 33321   346677777777776666555666667777777777776655555554 5667777777777


Q ss_pred             cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657          352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG  431 (456)
Q Consensus       352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  431 (456)
                      .+++. + ....+++|+.|++++|.+++.++ .+..+++|+.|++++|.+++.+.....+++|+.+++++|.+.......
T Consensus       180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             ccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            66633 2 23346677777777777665433 366666777777777776654444334566777777776664122222


Q ss_pred             cccCCCcceEEEcc
Q 048657          432 TFFNCSSLVTLDLS  445 (456)
Q Consensus       432 ~~~~~~~L~~L~l~  445 (456)
                      .+..++.|+.++++
T Consensus       257 ~~~~l~~L~~l~~~  270 (487)
T 3oja_A          257 FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhCCCCcEEecc
Confidence            35556666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=5.4e-22  Score=176.01  Aligned_cols=201  Identities=23%  Similarity=0.292  Sum_probs=140.5

Q ss_pred             cccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEE
Q 048657          220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA  299 (456)
Q Consensus       220 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~  299 (456)
                      ..+.++++++.++ .+|..+.   ++++.|+++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            4667888887776 5565432   57788888888777655557777888888888887776 66666555677777777


Q ss_pred             ccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccc
Q 048657          300 LSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEG  379 (456)
Q Consensus       300 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  379 (456)
                      +++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            77777776665666667777777777777765555566777777777777777765555556777777777777777776


Q ss_pred             cCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657          380 LIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH  425 (456)
Q Consensus       380 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~  425 (456)
                      ..+..|..+++|+.|++++|++++.++..+. .++|+.|++++|.+.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            6666666777777777777777665554443 566777777777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=2e-23  Score=189.26  Aligned_cols=225  Identities=20%  Similarity=0.230  Sum_probs=114.6

Q ss_pred             ccEEEecCccccc-ccchhhh------hccccceeeeecccCcCCCCCcCc--cCCccccEEeCCCCccCCCCchhhhcc
Q 048657          172 LEYVDLSHIKMNG-EFPTWLL------ENNTKLIQLSVVNDSLAGPFRLPI--HSHKQLRLLDISTNNFRGHIPVEIGDV  242 (456)
Q Consensus       172 L~~L~l~~~~~~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~  242 (456)
                      ++.|+++++.+.. .++....      ..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+. |..+...
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            6666666666532 2332221      146777777777777766555554  6777777777777777643 5444331


Q ss_pred             ----CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcc--cch-hhcCCCcccEEEccCCccccc---cccc
Q 048657          243 ----LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI--PEH-LAVGCVNLESLALSNNNLEGH---MFSR  312 (456)
Q Consensus       243 ----~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~--~~~-~~~~~~~L~~L~l~~~~~~~~---~~~~  312 (456)
                          .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..  +.. .+..+++|++|++++|.+...   ....
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                156666666666666555566666666666666666554221  111 113455555555555555421   1112


Q ss_pred             ccccccccEEEccCcccccccc-ccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCC
Q 048657          313 NFNLANLKLLQLEGNRFVGEIP-QSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL  391 (456)
Q Consensus       313 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  391 (456)
                      +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L  298 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV  298 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence            2234445555555554443322 22333444444444444444 3333333  4444444444444433 22 4444444


Q ss_pred             CeEeCcCCccC
Q 048657          392 QILDISDNNIS  402 (456)
Q Consensus       392 ~~L~l~~~~l~  402 (456)
                      +.|++++|+++
T Consensus       299 ~~L~L~~N~l~  309 (312)
T 1wwl_A          299 GNLSLKGNPFL  309 (312)
T ss_dssp             EEEECTTCTTT
T ss_pred             CEEeccCCCCC
Confidence            44444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1e-22  Score=180.74  Aligned_cols=204  Identities=22%  Similarity=0.233  Sum_probs=98.9

Q ss_pred             cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657          216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL  295 (456)
Q Consensus       216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L  295 (456)
                      ..+++|+.|++.++.+. .++ .+ ..+++|+.+++++|.+.+.  ..+..+++|++|++++|.+. .++...+..+++|
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  111 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQ-GI-QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL  111 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred             ccccceeeeeeCCCCcc-ccc-cc-ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence            34555666666665544 222 11 2245555555555555431  24455555555555555554 3333333345555


Q ss_pred             cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657          296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN  375 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  375 (456)
                      ++|++++|.+.+.....+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            55555555555444444444555555555555554333333445555555555555554444444445555555555555


Q ss_pred             cccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657          376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG  431 (456)
Q Consensus       376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  431 (456)
                      .+.+..+..+..+++|+.|++++|++.+.      ++.++.+++..|.+.|.+|..
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCc
Confidence            55544444444555555555555544422      223444444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=5.2e-23  Score=197.64  Aligned_cols=234  Identities=21%  Similarity=0.197  Sum_probs=168.0

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  249 (456)
                      ++|+.|++++|.+.+..+.. +..+++|+.|++++|.+....+  +..+++|+.|++++|.+. .++.     .++|+.|
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L  104 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETL  104 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEE
T ss_pred             CCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEE
Confidence            37888888888877554443 4778888888888888765443  778888888888888776 2332     3788888


Q ss_pred             EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccccc-ccccccEEEccCcc
Q 048657          250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNR  328 (456)
Q Consensus       250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~  328 (456)
                      ++++|.+.+..+.   .+++|+.|++++|.+.+ .+...+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            8888887754432   45778888888888874 3333334678888888888888876666654 67888888888888


Q ss_pred             ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC-CCCCc
Q 048657          329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS-GSLPA  407 (456)
Q Consensus       329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~  407 (456)
                      +++. + ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +..+.
T Consensus       181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          181 IYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             cccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            8744 2 23458888888888888874 44457788888888888888875 4556777888888888888876 22222


Q ss_pred             cc-ccccccEEEcc
Q 048657          408 CF-HPLSIKQVHLS  420 (456)
Q Consensus       408 ~~-~~~~L~~l~l~  420 (456)
                      .+ ..+.++.+++.
T Consensus       257 ~~~~l~~L~~l~~~  270 (487)
T 3oja_A          257 FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhCCCCcEEecc
Confidence            22 24566666664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.7e-21  Score=172.74  Aligned_cols=204  Identities=24%  Similarity=0.246  Sum_probs=159.0

Q ss_pred             cceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEec
Q 048657          196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL  275 (456)
Q Consensus       196 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  275 (456)
                      ..+.++++++.++.. +..+  .+.++.|+++++.+. .++...+..+++|+.|+++++.+....+..+..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            456778877776643 3222  257888999888887 455444445788999999888887555556678888999999


Q ss_pred             cCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc
Q 048657          276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG  355 (456)
Q Consensus       276 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  355 (456)
                      ++|.+. .++...+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus        93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            888887 6666666678889999999988887777777788889999999988885555567888899999999988886


Q ss_pred             ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCC
Q 048657          356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGS  404 (456)
Q Consensus       356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  404 (456)
                      ..+..|..+++|+.|++++|.+++.++..+..+++|+.|++++|++...
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            6666788888999999999988877777788888899999998887644

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=3.6e-21  Score=172.07  Aligned_cols=201  Identities=20%  Similarity=0.171  Sum_probs=107.5

Q ss_pred             cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657          216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL  295 (456)
Q Consensus       216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L  295 (456)
                      +.+++++.+++.++.+. .+|..+.   +.++.|++++|.+.+..+..+..+++|++|++++|.+. .++..  ..+++|
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L   79 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL   79 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence            34445555555555554 3443322   35555555555555444455555566666666655554 33322  245556


Q ss_pred             cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657          296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN  375 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  375 (456)
                      ++|++++|.+... +..+..+++|+.|++++|.+++..+..|..+++|++|++++|+++...+..|..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            6666666555432 233445555666666666555444445555566666666666555444444555556666666666


Q ss_pred             cccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCccc
Q 048657          376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNML  424 (456)
Q Consensus       376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~  424 (456)
                      +++..++..+..+++|+.|++++|+++..+...+...+|+.+++++|.+
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            6554444445555566666666666555444444455556666655554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=5.8e-21  Score=170.68  Aligned_cols=199  Identities=23%  Similarity=0.222  Sum_probs=173.2

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +++++.++++.+.+. .+|..+  .+.++.|++++|.+. .++...+..+++|++|++++|.++.....  ..+++|+.|
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             cCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            678999999999887 455544  378999999999998 55555556899999999999999875443  678999999


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++++|.+. .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|.+++.++..|..+++|+.|++++|+++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            99999998 67888899999999999999999777788999999999999999999888888899999999999999999


Q ss_pred             CCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657          403 GSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       403 ~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  450 (456)
                      +.+...+. .++|+.|++++|.+. .+|.+ +...++|+.|++++|++.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEECCSCCBC
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEEeCCCCcc
Confidence            87776655 789999999999996 78887 455789999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=3.9e-21  Score=170.55  Aligned_cols=201  Identities=22%  Similarity=0.225  Sum_probs=142.9

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +++++.+++.++.+..  ...+..+++|++|++++|.+. .++  .+..+++|++|++++|.+.+.....+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            5677777777776652  234667777888888777776 333  23467778888888777776666666677778888


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            88887777555555677777888888877777555666677778888888888777666666777777888888887777


Q ss_pred             CCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCCC
Q 048657          403 GSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW  456 (456)
Q Consensus       403 ~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~~  456 (456)
                      +.++..+. +++|+.|++++|.+.        +.+++++.++++.|.++|.+|.|
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCc
Confidence            76665443 667788888777664        34567777777777777777754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=7.9e-21  Score=169.23  Aligned_cols=203  Identities=21%  Similarity=0.206  Sum_probs=102.3

Q ss_pred             cccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEE
Q 048657          220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA  299 (456)
Q Consensus       220 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~  299 (456)
                      .+++|++++|.+. .++......+++|+.+++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEE
Confidence            4555555555544 222222222455555555555544333344555555555555555554 33333333455555555


Q ss_pred             ccCCcccccccccccccccccEEEccCcccccc-ccccccCCCCCcEEEcCCCcCccccCccccCCCCCc----EEEcCC
Q 048657          300 LSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE-IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQ----YIIMPN  374 (456)
Q Consensus       300 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~  374 (456)
                      +++|.+.......+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+++|+    .|++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            555555544444455555556666655555432 345555556666666666655544444444444444    555666


Q ss_pred             CcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657          375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH  425 (456)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~  425 (456)
                      |.+.+..+..+. ..+|+.|++++|.+++.++..+. .++|+.|++++|++.
T Consensus       187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            655544333332 23566666666655554444332 455666666665554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=8.3e-21  Score=166.38  Aligned_cols=178  Identities=23%  Similarity=0.274  Sum_probs=94.7

Q ss_pred             CcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657          270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN  349 (456)
Q Consensus       270 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  349 (456)
                      .++++++++.+. .+|..+   .+++++|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            344555555444 444322   2345555555555554444445555555555555555554444445555555555555


Q ss_pred             CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCC
Q 048657          350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQL  428 (456)
Q Consensus       350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~  428 (456)
                      +|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.++..+. .++|+.|++++|.+. .+
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc
Confidence            5555544444555555566666665555554444455555566666666655554443332 455666666666554 34


Q ss_pred             CcccccCCCcceEEEccCcccCCC
Q 048657          429 KRGTFFNCSSLVTLDLSYNRLNGS  452 (456)
Q Consensus       429 ~~~~~~~~~~L~~L~l~~~~l~~~  452 (456)
                      +...|..+++|+.|++++|++...
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            444455556666666666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=2.3e-21  Score=175.66  Aligned_cols=226  Identities=16%  Similarity=0.118  Sum_probs=175.1

Q ss_pred             cccEEeCCCCccCCCCchhhh--ccCCcceEEEccCCccCCCccccc--cCCCCCcEEeccCCcCCCccc---chhhcCC
Q 048657          220 QLRLLDISTNNFRGHIPVEIG--DVLPSLYVFNNSMNALDGSIPSSF--GNMKFLQILDLSNNHLTGEIP---EHLAVGC  292 (456)
Q Consensus       220 ~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~l~~~~~---~~~~~~~  292 (456)
                      .++.+.+.++.+.+.....+.  ..+++|+++++++|.+.+..+..+  ..+++|++|++++|.+.+..+   ......+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            466677776655421111111  124679999999999888888777  889999999999999875433   1222368


Q ss_pred             CcccEEEccCCcccccccccccccccccEEEccCcccccc--c--cccccCCCCCcEEEcCCCcCccccCc----cccCC
Q 048657          293 VNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE--I--PQSLSKCSSLEGLHLNNNSLSGRIPR----WLGNL  364 (456)
Q Consensus       293 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~  364 (456)
                      ++|++|++++|.+....+..+..+++|++|++++|.+.+.  .  +..+..+++|++|++++|.++ ..+.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence            8999999999999888878888999999999999987542  2  233468899999999999986 3332    35678


Q ss_pred             CCCcEEEcCCCcccccCchhccCC---CCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceE
Q 048657          365 TWLQYIIMPNNHLEGLIPVEFCQL---DSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT  441 (456)
Q Consensus       365 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  441 (456)
                      ++|++|++++|.+++..|..+..+   ++|++|++++|+++..+. .+ +++|++|++++|++.+ ++.  +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~-~~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-GL-PAKLRVLDLSSNRLNR-APQ--PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-CC-CSCCSCEECCSCCCCS-CCC--TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-hh-cCCCCEEECCCCcCCC-Cch--hhhCCCccE
Confidence            999999999999998767666665   799999999999995543 33 4799999999999964 333  578899999


Q ss_pred             EEccCcccCC
Q 048657          442 LDLSYNRLNG  451 (456)
Q Consensus       442 L~l~~~~l~~  451 (456)
                      |++++|+++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999985

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=2.2e-22  Score=184.95  Aligned_cols=255  Identities=14%  Similarity=0.156  Sum_probs=169.2

Q ss_pred             CCccEEEecCcccccccchhhhhcc--ccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcce
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENN--TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLY  247 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  247 (456)
                      ...+.++++++.+..    ......  +.++.+++.++.+....+. +..+++|++|++++|.+.+.........+++|+
T Consensus        47 ~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            347888988876642    223344  7788888888877665444 456788888888888766431223334478888


Q ss_pred             EEEccCCccCCCccccccCCCCCcEEeccCC-cCCCcccchhhcCCCcccEEEccCC-ccccc-ccccccccc-cccEEE
Q 048657          248 VFNNSMNALDGSIPSSFGNMKFLQILDLSNN-HLTGEIPEHLAVGCVNLESLALSNN-NLEGH-MFSRNFNLA-NLKLLQ  323 (456)
Q Consensus       248 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~  323 (456)
                      .|++++|.+.+..+..+..+++|++|++++| .+.+.........+++|++|++++| .+++. ....+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            8888888777666777777888888888888 5553223333446788888888888 77653 344456677 888888


Q ss_pred             ccCcc--cc-ccccccccCCCCCcEEEcCCCc-CccccCccccCCCCCcEEEcCCCc-ccccCchhccCCCCCCeEeCcC
Q 048657          324 LEGNR--FV-GEIPQSLSKCSSLEGLHLNNNS-LSGRIPRWLGNLTWLQYIIMPNNH-LEGLIPVEFCQLDSLQILDISD  398 (456)
Q Consensus       324 l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~  398 (456)
                      +++|.  ++ ...+..+.++++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            88884  43 2345566678888888888887 666666777788888888888874 3322233566778888888888


Q ss_pred             CccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657          399 NNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG  431 (456)
Q Consensus       399 ~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  431 (456)
                      | ++......+ ...+..|++++|.+++..+..
T Consensus       282 ~-i~~~~~~~l-~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          282 I-VPDGTLQLL-KEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             S-SCTTCHHHH-HHHSTTSEESCCCSCCTTCSS
T ss_pred             c-cCHHHHHHH-HhhCcceEEecccCccccCCc
Confidence            7 332111110 234666777777776555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=2.3e-22  Score=188.28  Aligned_cols=136  Identities=15%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             ccccEEEccCccccc-ccc---ccccCCCCCcEEEcCCCcCcc-----ccCccccCCCCCcEEEcCCCccc----ccCch
Q 048657          317 ANLKLLQLEGNRFVG-EIP---QSLSKCSSLEGLHLNNNSLSG-----RIPRWLGNLTWLQYIIMPNNHLE----GLIPV  383 (456)
Q Consensus       317 ~~L~~L~l~~~~~~~-~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~  383 (456)
                      ++|++|++++|.+.. ..+   ..+..+++|++|++++|.++.     ..+..+..+++|+.|++++|.++    ...+.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            455555555555531 111   234445555555555555542     12224455555555555555553    23344


Q ss_pred             hccCCCCCCeEeCcCCccCCCC----Ccc---cccccccEEEccCcccCC----CCCcccccCCCcceEEEccCcccCCC
Q 048657          384 EFCQLDSLQILDISDNNISGSL----PAC---FHPLSIKQVHLSKNMLHG----QLKRGTFFNCSSLVTLDLSYNRLNGS  452 (456)
Q Consensus       384 ~~~~~~~L~~L~l~~~~l~~~~----~~~---~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~  452 (456)
                      .+..+++|+.|++++|.+++..    +..   ...++|+.|++++|.+.+    .++...+.++++|+.|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            4555555555555555554331    111   113455555555555543    24444334456666666666666544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4.8e-20  Score=166.43  Aligned_cols=194  Identities=21%  Similarity=0.298  Sum_probs=130.4

Q ss_pred             ccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCc
Q 048657          215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN  294 (456)
Q Consensus       215 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  294 (456)
                      ...+++|++|++.++.+. .++ .+ ..+++|+.|++++|.+.+..+  +..+++|++|++++|.+. .++.  +..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~-~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTT
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hh-hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCC
Confidence            345678888888888776 344 22 336778888888777764333  777778888888877776 4432  345777


Q ss_pred             ccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCC
Q 048657          295 LESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN  374 (456)
Q Consensus       295 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  374 (456)
                      |++|++++|.+.+..  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +. +..+++|+.|++++
T Consensus       109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADD  182 (308)
T ss_dssp             CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred             CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCC
Confidence            777777777776533  25667777777777777763322  66777777777777777643 22 67777777777777


Q ss_pred             CcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657          375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~  425 (456)
                      |.+++..+  +..+++|+.|++++|++++..+ ...+++|+.|++++|.+.
T Consensus       183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          183 NKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             CccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence            77765433  6667777777777777775542 334667777777777774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.5e-20  Score=163.51  Aligned_cols=198  Identities=16%  Similarity=0.120  Sum_probs=157.9

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCc-CCCcccchhhcCCCcccEEEccC-Cccccccccccccccccc
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH-LTGEIPEHLAVGCVNLESLALSN-NNLEGHMFSRNFNLANLK  320 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~  320 (456)
                      .++++.++++++.+.+..+..+..+++|++|++++|. +. .++...+..+++|++|++++ |.+.......+..+++|+
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            3589999999998886666678889999999999986 76 67766666888999999998 888877767788889999


Q ss_pred             EEEccCccccccccccccCCCCCc---EEEcCCC-cCccccCccccCCCCCc-EEEcCCCcccccCchhccCCCCCCeEe
Q 048657          321 LLQLEGNRFVGEIPQSLSKCSSLE---GLHLNNN-SLSGRIPRWLGNLTWLQ-YIIMPNNHLEGLIPVEFCQLDSLQILD  395 (456)
Q Consensus       321 ~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~  395 (456)
                      +|++++|.+.+ +|. +..+++|+   +|++++| .+++..+..|..+++|+ .|++++|.++...+..+.. ++|+.|+
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred             EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence            99999998874 554 77888887   9999998 88766666788899999 9999999888665555655 7899999


Q ss_pred             CcCCc-cCCCCCcccc-c-ccccEEEccCcccCCCCCcccccCCCcceEEEccCcc
Q 048657          396 ISDNN-ISGSLPACFH-P-LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR  448 (456)
Q Consensus       396 l~~~~-l~~~~~~~~~-~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  448 (456)
                      +++|+ +++.++..+. . ++|+.|++++|.+. .++..   .+++|+.|+++++.
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence            99995 8876666554 5 78999999999885 56654   57788888888763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=9.8e-22  Score=182.05  Aligned_cols=250  Identities=16%  Similarity=0.123  Sum_probs=137.3

Q ss_pred             EEecCcccccccchhhhhccccceeeeecccCcCCCCC----cCccCCc-cccEEeCCCCccCCCCchhhhcc----CCc
Q 048657          175 VDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFR----LPIHSHK-QLRLLDISTNNFRGHIPVEIGDV----LPS  245 (456)
Q Consensus       175 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~  245 (456)
                      .+++.+.+.+.++.. ....+.|++|++++|.+.....    ..+..++ +|++|++++|.+.+..+..+...    .++
T Consensus         3 ~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            456666666554443 3445557777777777665544    4455666 67777777777765444444332    266


Q ss_pred             ceEEEccCCccCCCcccc----ccCC-CCCcEEeccCCcCCCcccchhh---cC-CCcccEEEccCCccccccccc----
Q 048657          246 LYVFNNSMNALDGSIPSS----FGNM-KFLQILDLSNNHLTGEIPEHLA---VG-CVNLESLALSNNNLEGHMFSR----  312 (456)
Q Consensus       246 L~~l~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~~~~~~---~~-~~~L~~L~l~~~~~~~~~~~~----  312 (456)
                      |+.|++++|.+.+..+..    +..+ ++|++|++++|.+.+..+..+.   .. +.+|++|++++|.+.+.....    
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            777777777666444432    2333 6677777777766533222221   12 246777777777666432222    


Q ss_pred             ccccc-cccEEEccCccccccccc----cccCC-CCCcEEEcCCCcCccc----cCccccC-CCCCcEEEcCCCcccccC
Q 048657          313 NFNLA-NLKLLQLEGNRFVGEIPQ----SLSKC-SSLEGLHLNNNSLSGR----IPRWLGN-LTWLQYIIMPNNHLEGLI  381 (456)
Q Consensus       313 ~~~~~-~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~  381 (456)
                      +...+ +|++|++++|.+++..+.    .+..+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            22333 667777777666544332    23334 3666777776666542    2333333 346666666666665443


Q ss_pred             c----hhccCCCCCCeEeCcCCccCCCCCcc--------cccccccEEEccCcccC
Q 048657          382 P----VEFCQLDSLQILDISDNNISGSLPAC--------FHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       382 ~----~~~~~~~~L~~L~l~~~~l~~~~~~~--------~~~~~L~~l~l~~~~~~  425 (456)
                      +    ..+..+++|+.|++++|.+.......        ...++|+.+|+++|.+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            3    22345566666666666643332211        12445666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2e-20  Score=169.48  Aligned_cols=228  Identities=17%  Similarity=0.155  Sum_probs=117.5

Q ss_pred             CCccEEEecCcccccccchhh--hhccccceeeeecccCcCCCCCcCc--cCCccccEEeCCCCccCCCCch---hhhcc
Q 048657          170 HDLEYVDLSHIKMNGEFPTWL--LENNTKLIQLSVVNDSLAGPFRLPI--HSHKQLRLLDISTNNFRGHIPV---EIGDV  242 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~---~~~~~  242 (456)
                      ..++.+.+.++.+.+.....+  ....++|++|++++|.+....+..+  ..+++|++|++++|.+.+..+.   .....
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            357778887776643222111  1244568888888888777666666  7788888888888887743331   11113


Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCc--ccc-hhhcCCCcccEEEccCCcccccccc---ccccc
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IPE-HLAVGCVNLESLALSNNNLEGHMFS---RNFNL  316 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~  316 (456)
                      +++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.  ++. .....+++|++|++++|+++.....   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            56666666666666655555666666666666666654321  111 1112345555555555554321110   12334


Q ss_pred             ccccEEEccCccccccccccccCC---CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCe
Q 048657          317 ANLKLLQLEGNRFVGEIPQSLSKC---SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI  393 (456)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  393 (456)
                      ++|++|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|.+++..  .+..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--QPDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--CTTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--hhhhCCCccE
Confidence            445555555555443333333333   34445555544444 3333332  34444444444444321  1334444444


Q ss_pred             EeCcCCccC
Q 048657          394 LDISDNNIS  402 (456)
Q Consensus       394 L~l~~~~l~  402 (456)
                      |++++|+++
T Consensus       299 L~L~~N~l~  307 (310)
T 4glp_A          299 LTLDGNPFL  307 (310)
T ss_dssp             EECSSTTTS
T ss_pred             EECcCCCCC
Confidence            444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=3.1e-21  Score=177.19  Aligned_cols=248  Identities=16%  Similarity=0.115  Sum_probs=138.3

Q ss_pred             ceeeeecccCcCCCCCcCccCC--ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCC-ccccccCCCCCcEE
Q 048657          197 LIQLSVVNDSLAGPFRLPIHSH--KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGS-IPSSFGNMKFLQIL  273 (456)
Q Consensus       197 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L  273 (456)
                      ++.++++.+.+.   +..+..+  +.++.+++.++.+.+..+. ... +++|+.+++++|.+.+. ++..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            556666655443   1223333  5666677766666543333 222 56677777776665543 55556666777777


Q ss_pred             eccCCcCCCcccchhhcCCCcccEEEccCC-ccccc-ccccccccccccEEEccCc-ccccc-ccccccCCC-CCcEEEc
Q 048657          274 DLSNNHLTGEIPEHLAVGCVNLESLALSNN-NLEGH-MFSRNFNLANLKLLQLEGN-RFVGE-IPQSLSKCS-SLEGLHL  348 (456)
Q Consensus       274 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l  348 (456)
                      ++++|.+.+..+..+ ..+++|++|++++| .+++. ....+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            777666653333333 24666777777766 44432 3333455666777777776 65532 344456666 7777777


Q ss_pred             CCC--cCc-cccCccccCCCCCcEEEcCCCc-ccccCchhccCCCCCCeEeCcCCc-cCCCCC-cccccccccEEEccCc
Q 048657          349 NNN--SLS-GRIPRWLGNLTWLQYIIMPNNH-LEGLIPVEFCQLDSLQILDISDNN-ISGSLP-ACFHPLSIKQVHLSKN  422 (456)
Q Consensus       349 ~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~~L~~l~l~~~  422 (456)
                      ++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +..... ....+++|++|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            766  343 2344555566677777777766 554555566666677777777664 221111 1112566777777766


Q ss_pred             ccCCCCCcccccCC-CcceEEEccCcccCCCCCC
Q 048657          423 MLHGQLKRGTFFNC-SSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       423 ~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~p~  455 (456)
                       +    +...+..+ .++..|++++|.+++..|.
T Consensus       283 -i----~~~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          283 -V----PDGTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             -S----CTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             -c----CHHHHHHHHhhCcceEEecccCccccCC
Confidence             2    22222222 2244455666667666664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=2.1e-20  Score=162.59  Aligned_cols=196  Identities=17%  Similarity=0.180  Sum_probs=123.5

Q ss_pred             cccEEeCCCCccCCCCchhhhccCCcceEEEccCCc-cCCCccccccCCCCCcEEeccC-CcCCCcccchhhcCCCcccE
Q 048657          220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA-LDGSIPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLES  297 (456)
Q Consensus       220 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~  297 (456)
                      +++.|+++++.+. .++...+..+++|+.+++++|. +....+..+..+++|++|++++ +.+. .++...+..+++|++
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            6777777777766 4444333346777777777775 5544444666777777777776 6665 555544556677777


Q ss_pred             EEccCCccccccccccccccccc---EEEccCc-cccccccccccCCCCCc-EEEcCCCcCccccCccccCCCCCcEEEc
Q 048657          298 LALSNNNLEGHMFSRNFNLANLK---LLQLEGN-RFVGEIPQSLSKCSSLE-GLHLNNNSLSGRIPRWLGNLTWLQYIIM  372 (456)
Q Consensus       298 L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l  372 (456)
                      |++++|.+.+.. . +..+++|+   .|++++| .+....+..|..+++|+ +|++++|.++...+..+.. ++|++|++
T Consensus       110 L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            777777666532 2 55566666   7777777 66644445566777777 7777777766332333333 67777777


Q ss_pred             CCCc-ccccCchhccCC-CCCCeEeCcCCccCCCCCcccccccccEEEccCc
Q 048657          373 PNNH-LEGLIPVEFCQL-DSLQILDISDNNISGSLPACFHPLSIKQVHLSKN  422 (456)
Q Consensus       373 ~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~  422 (456)
                      ++|+ +++..+..|..+ ++|+.|++++|++++.+..  .+.+++.|+++++
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            7774 665656666666 7777777777777654433  4556777777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=2.4e-19  Score=157.06  Aligned_cols=181  Identities=22%  Similarity=0.256  Sum_probs=144.0

Q ss_pred             cccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEE
Q 048657          220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA  299 (456)
Q Consensus       220 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~  299 (456)
                      ..+.++++++.+. .+|..+.   +.++.|+++++.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence            4556777776665 5555443   57888888888887766777888888888888888887 55555455788888888


Q ss_pred             ccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccc
Q 048657          300 LSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEG  379 (456)
Q Consensus       300 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  379 (456)
                      +++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            88888887777777788899999999998885555567888999999999998886666678889999999999999987


Q ss_pred             cCchhccCCCCCCeEeCcCCccCCCC
Q 048657          380 LIPVEFCQLDSLQILDISDNNISGSL  405 (456)
Q Consensus       380 ~~~~~~~~~~~L~~L~l~~~~l~~~~  405 (456)
                      ..+..+..+++|+.|++++|++....
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            77778888899999999999887653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=4.4e-21  Score=179.54  Aligned_cols=244  Identities=18%  Similarity=0.175  Sum_probs=112.2

Q ss_pred             CchHHhhcCCCccEEEecCcccccccchhh---hhccccceeeeecccCcCC---CCCcC-------ccCCccccEEeCC
Q 048657          161 TFPKFLYHQHDLEYVDLSHIKMNGEFPTWL---LENNTKLIQLSVVNDSLAG---PFRLP-------IHSHKQLRLLDIS  227 (456)
Q Consensus       161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~---~~~~~-------l~~~~~L~~L~l~  227 (456)
                      .+...+..+++|+.|++++|.+.+..+..+   +..+++|++|++++|.+..   .++..       +..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            455677788889999999988765544332   2345566666665543321   11111       1344455555555


Q ss_pred             CCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhh---cCC---------Ccc
Q 048657          228 TNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA---VGC---------VNL  295 (456)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~---~~~---------~~L  295 (456)
                      +|.+.+....                     .++..+..+++|++|++++|.+.+..+..+.   ..+         ++|
T Consensus       103 ~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L  161 (386)
T 2ca6_A          103 DNAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL  161 (386)
T ss_dssp             SCCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence            5544421100                     2333444445555555555444311111111   011         445


Q ss_pred             cEEEccCCcccccc-c---ccccccccccEEEccCcccccc-----ccccccCCCCCcEEEcCCCcCc----cccCcccc
Q 048657          296 ESLALSNNNLEGHM-F---SRNFNLANLKLLQLEGNRFVGE-----IPQSLSKCSSLEGLHLNNNSLS----GRIPRWLG  362 (456)
Q Consensus       296 ~~L~l~~~~~~~~~-~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~  362 (456)
                      ++|++++|+++... +   ..+..+++|++|++++|.+...     .+..+..+++|++|++++|.++    ..++..+.
T Consensus       162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~  241 (386)
T 2ca6_A          162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK  241 (386)
T ss_dssp             CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred             cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence            55555555444211 1   1233444555555555554311     1114444555555555555543    23444445


Q ss_pred             CCCCCcEEEcCCCccccc----CchhccC--CCCCCeEeCcCCccCC----CCCccc-c-cccccEEEccCcccC
Q 048657          363 NLTWLQYIIMPNNHLEGL----IPVEFCQ--LDSLQILDISDNNISG----SLPACF-H-PLSIKQVHLSKNMLH  425 (456)
Q Consensus       363 ~~~~L~~L~l~~~~~~~~----~~~~~~~--~~~L~~L~l~~~~l~~----~~~~~~-~-~~~L~~l~l~~~~~~  425 (456)
                      .+++|+.|++++|.+++.    ++..+..  +++|+.|++++|.++.    ..+..+ . +++|++|++++|.+.
T Consensus       242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            555555555555555432    2233322  4555555555555544    122221 1 345555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.2e-19  Score=154.24  Aligned_cols=158  Identities=24%  Similarity=0.222  Sum_probs=86.9

Q ss_pred             CCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEE
Q 048657          267 MKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL  346 (456)
Q Consensus       267 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  346 (456)
                      .+++++|+++++.+. .++...+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            345666666666655 4444434455666666666666555444444555666666666665553333445555666666


Q ss_pred             EcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCC
Q 048657          347 HLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG  426 (456)
Q Consensus       347 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~  426 (456)
                      ++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.      ++.+++|++..|.+.+
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSG  179 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------TTTTHHHHHHHHHCTT
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------CCCHHHHHHHHHhCCc
Confidence            6666655544444455556666666666655554444455555666666666554432      2345555555555555


Q ss_pred             CCCcc
Q 048657          427 QLKRG  431 (456)
Q Consensus       427 ~~~~~  431 (456)
                      .+|..
T Consensus       180 ~ip~~  184 (208)
T 2o6s_A          180 VVRNS  184 (208)
T ss_dssp             TBBCT
T ss_pred             eeecc
Confidence            55544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=7.5e-19  Score=158.62  Aligned_cols=195  Identities=20%  Similarity=0.281  Sum_probs=127.5

Q ss_pred             ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657          193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  272 (456)
Q Consensus       193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  272 (456)
                      .+++|++|++.++.+....  .+..+++|+.|++++|.+. .++.  ...+++|+.|++++|.+.+.  ..+..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            3445555555555444321  3555666777777766665 3333  23366777777777766542  35667777777


Q ss_pred             EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCc
Q 048657          273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNS  352 (456)
Q Consensus       273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  352 (456)
                      |++++|.+. .++.  +..+++|++|++++|.+.+...  +..+++|+.|++++|.+.+ .+. +..+++|+.|++++|.
T Consensus       112 L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          112 LDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence            777777776 4443  3467777777777777765433  5667778888888887763 332 6777888888888887


Q ss_pred             CccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCC
Q 048657          353 LSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL  405 (456)
Q Consensus       353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  405 (456)
                      +++..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|++++.+
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence            764332  677788888888888877554  3677788888888888776543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.81  E-value=1.2e-20  Score=174.77  Aligned_cols=246  Identities=19%  Similarity=0.203  Sum_probs=179.8

Q ss_pred             CCCchHHhhcCCCccEEEecCcccccccchh---hhhccc-cceeeeecccCcCCCCCcCccCC-----ccccEEeCCCC
Q 048657          159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW---LLENNT-KLIQLSVVNDSLAGPFRLPIHSH-----KQLRLLDISTN  229 (456)
Q Consensus       159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~  229 (456)
                      .+.++..+...++|+.|++++|.+.+..+..   .+..++ +|++|++++|.+.......+..+     ++|++|++++|
T Consensus        11 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n   90 (362)
T 3goz_A           11 SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN   90 (362)
T ss_dssp             CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred             hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence            3345666666777999999999987665522   235566 89999999999887655555443     89999999999


Q ss_pred             ccCCCCchhhhcc---C-CcceEEEccCCccCCCccccc----cC-CCCCcEEeccCCcCCCcccchh---hcCCC-ccc
Q 048657          230 NFRGHIPVEIGDV---L-PSLYVFNNSMNALDGSIPSSF----GN-MKFLQILDLSNNHLTGEIPEHL---AVGCV-NLE  296 (456)
Q Consensus       230 ~~~~~~~~~~~~~---~-~~L~~l~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~l~~~~~~~~---~~~~~-~L~  296 (456)
                      .+.+..+..+...   + ++|+.|+++.|.+.+..+..+    .. .++|++|++++|.+.+.....+   ....+ +|+
T Consensus        91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  170 (362)
T 3goz_A           91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN  170 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence            9886555544432   3 799999999999876554443    33 4699999999998874433322   12344 899


Q ss_pred             EEEccCCccccccccccc----cc-ccccEEEccCcccccc----ccccccC-CCCCcEEEcCCCcCccccC----cccc
Q 048657          297 SLALSNNNLEGHMFSRNF----NL-ANLKLLQLEGNRFVGE----IPQSLSK-CSSLEGLHLNNNSLSGRIP----RWLG  362 (456)
Q Consensus       297 ~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~----~~~~~~~-l~~L~~L~l~~~~~~~~~~----~~~~  362 (456)
                      +|++++|.+++.....+.    .+ ++|++|++++|.+.+.    ++..+.. .++|++|++++|.+++..+    ..+.
T Consensus       171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~  250 (362)
T 3goz_A          171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD  250 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred             EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence            999999998866554333    34 5999999999998753    3445555 4699999999999886544    4456


Q ss_pred             CCCCCcEEEcCCCccccc-------CchhccCCCCCCeEeCcCCccCCC
Q 048657          363 NLTWLQYIIMPNNHLEGL-------IPVEFCQLDSLQILDISDNNISGS  404 (456)
Q Consensus       363 ~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~l~~~  404 (456)
                      .+++|++|++++|.+.+.       .+..+..+++|+.|++++|++...
T Consensus       251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            789999999999985433       234566788899999999998755

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.6e-18  Score=147.21  Aligned_cols=155  Identities=23%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             CcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEc
Q 048657          293 VNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM  372 (456)
Q Consensus       293 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  372 (456)
                      +++++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34555555555554444444444555555555555554333333445555555555555554333334455555555555


Q ss_pred             CCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657          373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  451 (456)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  451 (456)
                      ++|.+++..+..+..+++|+.|++++|.+++.++..+. .++|++|++++|.+.        ..+++|+.|+++.|.++|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCc
Confidence            55555544444445555555555555555544433322 445555555555442        234455555555555555


Q ss_pred             CCCC
Q 048657          452 SIPD  455 (456)
Q Consensus       452 ~~p~  455 (456)
                      .+|+
T Consensus       180 ~ip~  183 (208)
T 2o6s_A          180 VVRN  183 (208)
T ss_dssp             TBBC
T ss_pred             eeec
Confidence            5553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=4.7e-18  Score=156.46  Aligned_cols=225  Identities=16%  Similarity=0.121  Sum_probs=169.0

Q ss_pred             cEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccE-EEc
Q 048657          222 RLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLES-LAL  300 (456)
Q Consensus       222 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-L~l  300 (456)
                      ++++-+++.++ .+|..+   .++++.|++++|.+....+.+|.++++|++|++++|.+.+.++...+..++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45677777777 777655   3689999999999885555678999999999999998875677777777888765 556


Q ss_pred             cCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCC-CcCccccCccccCC-CCCcEEEcCCCccc
Q 048657          301 SNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN-NSLSGRIPRWLGNL-TWLQYIIMPNNHLE  378 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~  378 (456)
                      .+|++....+..+..+++|+.|++++|.+....+..+.....+..+++.+ +.+....+..|..+ ..++.|++++|.++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            67888887778888899999999999999866666666777888898866 45654445566665 46889999999998


Q ss_pred             ccCchhccCCCCCCeEeCcC-CccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657          379 GLIPVEFCQLDSLQILDISD-NNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       379 ~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      .+.+..+ ..++|+++++.+ |.++..+...+. .++|++|++++|.+. .+|...|   .+|+.|.+.++.-..++|.
T Consensus       168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~---~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL---ENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSC---TTCCEEECTTCTTCCCCCC
T ss_pred             CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhh---ccchHhhhccCCCcCcCCC
Confidence            6655554 456899999975 667766555544 789999999999985 6777644   4566666666654556663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=8.6e-18  Score=150.26  Aligned_cols=169  Identities=27%  Similarity=0.281  Sum_probs=124.4

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +++++.++++.+.+...  ..+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|+.|
T Consensus        45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            66888888888877643  34677888888888888877 4444  44678888888888887663  236677888888


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++++|.+.+ . ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.++
T Consensus       118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            888888764 2 4577788888888888887643  567778888888888888876544  777888888888888877


Q ss_pred             CCCCcccccccccEEEccCcccC
Q 048657          403 GSLPACFHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       403 ~~~~~~~~~~~L~~l~l~~~~~~  425 (456)
                      +. +....+++|+.|++++|.+.
T Consensus       192 ~l-~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          192 DL-RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             BC-GGGTTCTTCSEEEEEEEEEE
T ss_pred             CC-hhhccCCCCCEEECcCCccc
Confidence            54 33444677888888888775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=2e-17  Score=160.02  Aligned_cols=161  Identities=24%  Similarity=0.286  Sum_probs=71.5

Q ss_pred             CCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEE
Q 048657          268 KFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLH  347 (456)
Q Consensus       268 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  347 (456)
                      ++|+.|++++|.+. .+|    ..+++|++|++++|.++... . +..  +|+.|++++|.+++ +|.   .+++|+.|+
T Consensus        80 ~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip-~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLP-E-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCC-C-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcc-h-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence            33444444444443 333    12344444444444444311 1 211  45555555555442 322   344555555


Q ss_pred             cCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccc-------cEEEcc
Q 048657          348 LNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSI-------KQVHLS  420 (456)
Q Consensus       348 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L-------~~l~l~  420 (456)
                      +++|.+++ +|.   .+++|+.|++++|.+++. |. +.  ++|+.|++++|.++..+.  +.. +|       +.|+++
T Consensus       147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~~lp~--~~~-~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLESLPA--VPV-RNHHSEETEIFFRCR  215 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCSSCCC--CC---------CCEEEECC
T ss_pred             CCCCccCc-CCC---cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCCchhh--HHH-hhhcccccceEEecC
Confidence            55555542 332   344555555555555442 22 32  455555555555553322  111 44       555555


Q ss_pred             CcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657          421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                      +|.+. .+|... ..+++|+.|++++|++++.+|
T Consensus       216 ~N~l~-~lp~~l-~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          216 ENRIT-HIPENI-LSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             SSCCC-CCCGGG-GGSCTTEEEECCSSSCCHHHH
T ss_pred             CCcce-ecCHHH-hcCCCCCEEEeeCCcCCCcCH
Confidence            55553 444442 225555555555555554433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=2.3e-17  Score=151.84  Aligned_cols=201  Identities=20%  Similarity=0.183  Sum_probs=91.6

Q ss_pred             cEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceE-EEc
Q 048657          173 EYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYV-FNN  251 (456)
Q Consensus       173 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-l~l  251 (456)
                      +.++.+++.++ .+|..+   .+++++|++++|.+.......|+.+++|++|++++|.+.+.++...+..++++.. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            34555555544 344322   2356666666666655544555666666666666665543444444433444433 333


Q ss_pred             cCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccC-Cccccccccccccc-ccccEEEccCccc
Q 048657          252 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN-NNLEGHMFSRNFNL-ANLKLLQLEGNRF  329 (456)
Q Consensus       252 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~  329 (456)
                      ..+.+....+..+..+++|++|++++|.+. .++...+....++..+++.+ +.+.......+... ..++.|++++|.+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            344444434445555555556655555554 33333222334444454433 23333222233222 2344445555544


Q ss_pred             cccccccccCCCCCcEEEcCC-CcCccccCccccCCCCCcEEEcCCCcccc
Q 048657          330 VGEIPQSLSKCSSLEGLHLNN-NSLSGRIPRWLGNLTWLQYIIMPNNHLEG  379 (456)
Q Consensus       330 ~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  379 (456)
                      + .++.......+|+++++.+ |.++...++.|..+++|++|++++|+++.
T Consensus       167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence            4 2222222334444444443 23332222334444444444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=1.6e-17  Score=139.67  Aligned_cols=154  Identities=18%  Similarity=0.149  Sum_probs=104.3

Q ss_pred             CCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEE
Q 048657          291 GCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI  370 (456)
Q Consensus       291 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  370 (456)
                      .+++|+++++++|.+....  .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus        42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3455666666666555322  3455666777777776553  22356677778888888887776667777778888888


Q ss_pred             EcCCCcccccCchhccCCCCCCeEeCcCCc-cCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657          371 IMPNNHLEGLIPVEFCQLDSLQILDISDNN-ISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL  449 (456)
Q Consensus       371 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  449 (456)
                      ++++|.+++..+..+..+++|+.|++++|+ ++.. +....+++|++|++++|.+.+ ++  .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCccc
Confidence            888888876667777788888888888887 5543 344446788888888888753 44  377888999999999888


Q ss_pred             CCC
Q 048657          450 NGS  452 (456)
Q Consensus       450 ~~~  452 (456)
                      .+.
T Consensus       194 ~~~  196 (197)
T 4ezg_A          194 GGK  196 (197)
T ss_dssp             ---
T ss_pred             CCc
Confidence            753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.1e-17  Score=154.73  Aligned_cols=154  Identities=25%  Similarity=0.199  Sum_probs=76.0

Q ss_pred             ccEEEccCCccccccccccc-ccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcC
Q 048657          295 LESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP  373 (456)
Q Consensus       295 L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  373 (456)
                      ++.|++++|.+++.....+. .+++|+.|++++|.+....+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44455555544444433333 44555555555555543333445555555555555555544444445555555555555


Q ss_pred             CCcccccCchhccCCCCCCeEeCcCCccCCCCCccc----ccccccEEEccCcccCCCCCcccccCCCc--ceEEEccCc
Q 048657          374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF----HPLSIKQVHLSKNMLHGQLKRGTFFNCSS--LVTLDLSYN  447 (456)
Q Consensus       374 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~~~L~~l~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~  447 (456)
                      +|.+....+..|..+++|+.|++++|.+++.+...+    .+++|+.|++++|.+. .++...|..+++  ++.|++++|
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCC
Confidence            555554444555555555555555555554443332    1445555555555553 344433444444  245555555


Q ss_pred             cc
Q 048657          448 RL  449 (456)
Q Consensus       448 ~l  449 (456)
                      ++
T Consensus       200 ~~  201 (361)
T 2xot_A          200 PL  201 (361)
T ss_dssp             CE
T ss_pred             Cc
Confidence            54

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=5.5e-17  Score=138.67  Aligned_cols=151  Identities=23%  Similarity=0.312  Sum_probs=109.7

Q ss_pred             cEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCC
Q 048657          271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN  350 (456)
Q Consensus       271 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  350 (456)
                      +.++++++.+. .+|..+   .++++.|++++|.+.......+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            56777777776 666543   35778888888877766666677777788888888877766677777778888888888


Q ss_pred             CcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657          351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH  425 (456)
Q Consensus       351 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~  425 (456)
                      |.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+. .++|+.+++++|.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            877755555567777788888888877777677777777777788877777766655444 567777777777663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=8.7e-17  Score=138.42  Aligned_cols=151  Identities=21%  Similarity=0.187  Sum_probs=84.4

Q ss_pred             CcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657          270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN  349 (456)
Q Consensus       270 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  349 (456)
                      .+.++++++.+. .+|..+   .++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            345666666655 555432   2556666666666665555555556666666666666653333445556666666666


Q ss_pred             CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657          350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH  425 (456)
Q Consensus       350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~  425 (456)
                      +|.++...+..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.++..+. .++|+.|++++|.+.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            66665444444555666666666666655 3344555556666666666665554443332 445555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=8.4e-17  Score=137.51  Aligned_cols=152  Identities=22%  Similarity=0.312  Sum_probs=102.1

Q ss_pred             cEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccc-ccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657          271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF-SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN  349 (456)
Q Consensus       271 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  349 (456)
                      +.++++++.+. .+|..+   .+.+++|++++|.+....+ ..+..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            47788877776 566533   3456777777777766532 345667777777777777765555567777777777777


Q ss_pred             CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCC
Q 048657          350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHG  426 (456)
Q Consensus       350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~  426 (456)
                      +|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+. .++|++|++++|.+..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            7777655566677777777777777777766666677777777777777777666554444 5566777777666643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=9e-17  Score=143.63  Aligned_cols=148  Identities=27%  Similarity=0.395  Sum_probs=71.6

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +++|+.|++++|.+.+..+  +..+++|++|++++|.+. .++.  ...+++|++|++++|.+.+.  ..+..+++|+.|
T Consensus        67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L  139 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL  139 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence            4444444444444443222  444555555555555444 2222  22445555555555554432  233445555555


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|+++
T Consensus       140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred             EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCccc
Confidence            5555555422  344555555555555555543322  55555555555555555432  22455555555555555554


Q ss_pred             C
Q 048657          403 G  403 (456)
Q Consensus       403 ~  403 (456)
                      .
T Consensus       214 ~  214 (291)
T 1h6t_A          214 N  214 (291)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=9.6e-17  Score=137.17  Aligned_cols=153  Identities=21%  Similarity=0.234  Sum_probs=131.5

Q ss_pred             eEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccC
Q 048657          247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEG  326 (456)
Q Consensus       247 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  326 (456)
                      +.++++++.+. .+|..+  .++++.|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l--~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC--CTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCcc--CcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            56778877776 455544  378999999999998 66665566789999999999999988788888999999999999


Q ss_pred             ccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657          327 NRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       327 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      |.++...+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99985555667889999999999999998888899999999999999999998888889999999999999998864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=1.2e-16  Score=136.66  Aligned_cols=134  Identities=19%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             CcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657          270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN  349 (456)
Q Consensus       270 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  349 (456)
                      +++|++++|.+.+..+...+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            45555555555422233333455666666666666655555556666667777777776665555556667777777777


Q ss_pred             CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657          350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      +|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++..
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            777766666667777777777777777766666667777777777777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=9.8e-17  Score=157.05  Aligned_cols=189  Identities=24%  Similarity=0.258  Sum_probs=145.5

Q ss_pred             ccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEc
Q 048657          221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL  300 (456)
Q Consensus       221 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l  300 (456)
                      +..+.+....+.+..+.   ..+++|+.|+++.+.+.. ++ .+..+++|+.|++++|.+. .++.  +..+++|+.|++
T Consensus        23 l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEEC
T ss_pred             HHHHhccCCCcccccch---hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEEC
Confidence            33444555444432222   236789999999888764 33 5788999999999999887 4444  457899999999


Q ss_pred             cCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCccccc
Q 048657          301 SNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL  380 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  380 (456)
                      ++|.+.+.  ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+.+.
T Consensus        95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           95 DENKIKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             cCCCCCCC--hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            99988763  357788999999999999874 3 4578889999999999988754  6788899999999999998866


Q ss_pred             CchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCC
Q 048657          381 IPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG  426 (456)
Q Consensus       381 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~  426 (456)
                      .+  +..+++|+.|+|++|.+.+. +....+++|+.|++++|.+.+
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred             hh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence            55  88889999999999988865 444457889999999998863

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=6.6e-17  Score=158.25  Aligned_cols=194  Identities=22%  Similarity=0.330  Sum_probs=156.9

Q ss_pred             cceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEec
Q 048657          196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL  275 (456)
Q Consensus       196 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  275 (456)
                      .+..+.+....+...  ..+..+++|+.|+++++.+. .++ .+ ..+++|+.|+++.|.+.+..+  +..+++|+.|++
T Consensus        22 ~l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GI-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCC-CCT-TG-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccc--cchhcCCCCCEEECcCCCCC-CCh-HH-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            344444444444432  23567789999999999987 444 23 348999999999999886544  889999999999


Q ss_pred             cCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc
Q 048657          276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG  355 (456)
Q Consensus       276 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  355 (456)
                      ++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|++++|.+.+
T Consensus        95 s~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           95 DENKIK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CSSCCC-CCTT--STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             cCCCCC-CChh--hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            999987 5542  45789999999999998864  4577899999999999999854  678899999999999999986


Q ss_pred             ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCc
Q 048657          356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA  407 (456)
Q Consensus       356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  407 (456)
                      ..+  +..+++|+.|+|++|.+.+.  ..+..+++|+.|++++|++...+..
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred             chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence            555  89999999999999999865  4688999999999999999875443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=6.5e-17  Score=135.88  Aligned_cols=152  Identities=18%  Similarity=0.195  Sum_probs=90.5

Q ss_pred             cCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCc
Q 048657          265 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLE  344 (456)
Q Consensus       265 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  344 (456)
                      ..+++|+.|+++++.+. .++.  ...+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34455566666666555 4442  23456666666666644432  2445566666666666666654555666667777


Q ss_pred             EEEcCCCcCccccCccccCCCCCcEEEcCCCc-ccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcc
Q 048657          345 GLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH-LEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNM  423 (456)
Q Consensus       345 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~  423 (456)
                      +|++++|.+++..+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|++++.. ....+++|+.|++++|+
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            77777776665556666667777777777776 4432 2 4666677777777777766533 33345667777777776


Q ss_pred             c
Q 048657          424 L  424 (456)
Q Consensus       424 ~  424 (456)
                      +
T Consensus       193 i  193 (197)
T 4ezg_A          193 I  193 (197)
T ss_dssp             -
T ss_pred             c
Confidence            5

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1.1e-16  Score=147.82  Aligned_cols=176  Identities=23%  Similarity=0.213  Sum_probs=117.2

Q ss_pred             cEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCcccccc-CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEc
Q 048657          222 RLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFG-NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL  300 (456)
Q Consensus       222 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l  300 (456)
                      +.++.+++.+. .+|..+.   +.++.|++++|.+.+..+..+. .+++|+.|++++|.+. .++...+..+++|++|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence            35566666655 4554432   3567777777776655555555 6777777777777776 555444456777777777


Q ss_pred             cCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccc---cCCCCCcEEEcCCCcc
Q 048657          301 SNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWL---GNLTWLQYIIMPNNHL  377 (456)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~  377 (456)
                      ++|.+.......+..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+..+   ..+++|+.|++++|.+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            7777776666666677777777777777775556677777777777777777764333334   4577777888887777


Q ss_pred             cccCchhccCCCC--CCeEeCcCCccC
Q 048657          378 EGLIPVEFCQLDS--LQILDISDNNIS  402 (456)
Q Consensus       378 ~~~~~~~~~~~~~--L~~L~l~~~~l~  402 (456)
                      +...+..+..++.  ++.|++++|++.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCcc
Confidence            7666666666665  367777777664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=4.7e-16  Score=150.56  Aligned_cols=183  Identities=25%  Similarity=0.354  Sum_probs=111.7

Q ss_pred             ccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEe
Q 048657          195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD  274 (456)
Q Consensus       195 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~  274 (456)
                      .+++.|+++++.+.. ++..+  +++|+.|++++|.+. .+|    ..+++|+.|++++|.+.+ +|. +..  +|+.|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            367777777777665 33333  266777777777776 555    235677777777777664 444 433  677777


Q ss_pred             ccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCc
Q 048657          275 LSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS  354 (456)
Q Consensus       275 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  354 (456)
                      +++|.+. .++.    .+++|++|++++|.++....    .+++|+.|++++|.+++ +|. +.  ++|+.|++++|.++
T Consensus       127 Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          127 VDNNQLT-MLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCCCcCC-CCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            7777766 3544    35667777777776665322    35667777777777663 444 43  66777777777666


Q ss_pred             cccCccccCCCCC-------cEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCc
Q 048657          355 GRIPRWLGNLTWL-------QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA  407 (456)
Q Consensus       355 ~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  407 (456)
                       .+|. +..  +|       +.|++++|.++. +|..+..+++|+.|++++|++++..+.
T Consensus       194 -~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          194 -SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             -SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             -chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence             4444 433  55       667777766663 344455566677777777666654443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=7e-16  Score=132.72  Aligned_cols=135  Identities=24%  Similarity=0.273  Sum_probs=86.4

Q ss_pred             CCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEE
Q 048657          268 KFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLH  347 (456)
Q Consensus       268 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  347 (456)
                      ++|+.|++++|.+. .++...+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            44555555555554 33222233455555555555555544444455666667777777766644445566777777777


Q ss_pred             cCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCC
Q 048657          348 LNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGS  404 (456)
Q Consensus       348 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  404 (456)
                      +++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            7777776 6666777777777777777777766666677777778888877777644

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=2e-15  Score=141.24  Aligned_cols=334  Identities=17%  Similarity=0.173  Sum_probs=158.9

Q ss_pred             CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCC
Q 048657           32 SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISL  111 (456)
Q Consensus        32 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  111 (456)
                      ++.+...+|.+|.+|+++.+..+ ++.....+|.+|++|+.+++..+ ++ .++..++.++++|+.+.+..+-.  ....
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~--~i~~  133 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLK--SIGV  133 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCC--EECT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCcee--eecc
Confidence            34455555666666666666432 44344455666666666666543 33 45555555566555555443311  1122


Q ss_pred             CcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhh
Q 048657          112 EPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL  191 (456)
Q Consensus       112 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  191 (456)
                      ..+..+...+.........                              --...+..+.+|+.+.+..+..  .+....+
T Consensus       134 ~aF~~~~~~~~~~~~~~~~------------------------------i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F  181 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGVTV------------------------------IGDEAFATCESLEYVSLPDSME--TLHNGLF  181 (394)
T ss_dssp             TTTTTCCCSEEECCTTCCE------------------------------ECTTTTTTCTTCCEEECCTTCC--EECTTTT
T ss_pred             eeeecccccccccCccccc------------------------------cchhhhcccCCCcEEecCCccc--eeccccc
Confidence            2222222111111100000                              0012344566666666654321  3334445


Q ss_pred             hccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCc
Q 048657          192 ENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ  271 (456)
Q Consensus       192 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~  271 (456)
                      .+|.+|+.+.+..+ +.......+..+..|+.+.+..+...                           +.........|+
T Consensus       182 ~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~---------------------------i~~~~~~~~~l~  233 (394)
T 4fs7_A          182 SGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY---------------------------LGDFALSKTGVK  233 (394)
T ss_dssp             TTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE---------------------------ECTTTTTTCCCC
T ss_pred             cCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE---------------------------eehhhcccCCCc
Confidence            56666666665443 22222233444455554444332211                           111122234455


Q ss_pred             EEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCC
Q 048657          272 ILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN  351 (456)
Q Consensus       272 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  351 (456)
                      .+.+... +. .+....+..+..++.+.+..+.. ......+..+..++.+......+   ....|..+.+|+.+.+.++
T Consensus       234 ~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          234 NIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             EEEECTT-CC-EECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT
T ss_pred             eEEECCC-ce-ecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc
Confidence            5554432 11 23333333455555555544321 22233344555555555444332   1234556666666666543


Q ss_pred             cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCc
Q 048657          352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKR  430 (456)
Q Consensus       352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~  430 (456)
                       ++.....+|.+|++|+.+++.++ ++.+...+|.+|++|+.+++..+ ++......+. +.+|+++++..+ + ..+. 
T Consensus       308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~-~~~~-  381 (394)
T 4fs7_A          308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-L-EQYR-  381 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-G-GGGG-
T ss_pred             -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-C-EEhh-
Confidence             44344556666777777776543 44455566667777777777654 4444444444 566777777544 2 2333 


Q ss_pred             ccccCCCcceEE
Q 048657          431 GTFFNCSSLVTL  442 (456)
Q Consensus       431 ~~~~~~~~L~~L  442 (456)
                      ..|.+|++|+.+
T Consensus       382 ~~F~~c~~L~~I  393 (394)
T 4fs7_A          382 YDFEDTTKFKWI  393 (394)
T ss_dssp             GGBCTTCEEEEE
T ss_pred             heecCCCCCcEE
Confidence            347778887765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.4e-16  Score=140.10  Aligned_cols=169  Identities=21%  Similarity=0.256  Sum_probs=125.3

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +.++..+++..+.+.+ ++ .+..+++|+.|++++|.+. .++.  ...+++|++|++++|.+.+...  +..+++|+.|
T Consensus        18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cchH--HhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3456677777777663 33 5677888899999888887 5552  3467888888888888876554  6778888888


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++++|.+.+ .+. +.. ++|++|++++|.+++.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|+++
T Consensus        91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred             ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence            888888874 332 223 7888888888888743  3578888888888888888765  36777888888888888887


Q ss_pred             CCCCcccccccccEEEccCcccCC
Q 048657          403 GSLPACFHPLSIKQVHLSKNMLHG  426 (456)
Q Consensus       403 ~~~~~~~~~~~L~~l~l~~~~~~~  426 (456)
                      +. .....+++|+.|++++|.+.+
T Consensus       164 ~~-~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          164 NT-GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             BC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ch-HHhccCCCCCEEeCCCCcccC
Confidence            66 334446788888888888753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=7.6e-17  Score=147.08  Aligned_cols=103  Identities=18%  Similarity=0.092  Sum_probs=75.4

Q ss_pred             CCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCc-EEEcCCCcCccccCccccCCCCCcEE
Q 048657          292 CVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLE-GLHLNNNSLSGRIPRWLGNLTWLQYI  370 (456)
Q Consensus       292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L  370 (456)
                      +++|+++++.+|+++......|.++.+|+++++.++ +....+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            566777777776666666666777777777777776 5445566777788887 888877 5665666778888888888


Q ss_pred             EcCCCcccccCchhccCCCCCCeEeC
Q 048657          371 IMPNNHLEGLIPVEFCQLDSLQILDI  396 (456)
Q Consensus       371 ~l~~~~~~~~~~~~~~~~~~L~~L~l  396 (456)
                      +++++.+..+...+|.++++|++++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            88888877777778888888887753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.9e-16  Score=144.39  Aligned_cols=103  Identities=15%  Similarity=0.132  Sum_probs=89.9

Q ss_pred             CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCC-eEeCcCCccCCCCCcccc-cccccE
Q 048657          339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ-ILDISDNNISGSLPACFH-PLSIKQ  416 (456)
Q Consensus       339 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~-~~~L~~  416 (456)
                      .|++|+.+++++|.++.....+|.+|++|+++++.++ +..+...+|..+++|+ .+++.+ .++......+. +.+|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            4899999999999998777788999999999999998 7778888999999999 999998 77767666665 789999


Q ss_pred             EEccCcccCCCCCcccccCCCcceEEEc
Q 048657          417 VHLSKNMLHGQLKRGTFFNCSSLVTLDL  444 (456)
Q Consensus       417 l~l~~~~~~~~~~~~~~~~~~~L~~L~l  444 (456)
                      +++.+|.+. .++..+|.++++|+.|..
T Consensus       302 l~l~~n~i~-~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKIT-TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccC-ccchhhhcCCcchhhhcc
Confidence            999999995 788888999999999863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=3.4e-16  Score=127.93  Aligned_cols=135  Identities=22%  Similarity=0.184  Sum_probs=81.9

Q ss_pred             ccccEEEccCcccc-ccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEe
Q 048657          317 ANLKLLQLEGNRFV-GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD  395 (456)
Q Consensus       317 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  395 (456)
                      ++|+.|++++|.+. +.++..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554 34444455566666666666665533  5556666666666666666654555555566666666


Q ss_pred             CcCCccCCCC--CcccccccccEEEccCcccCCCCCc---ccccCCCcceEEEccCcccCCCCCC
Q 048657          396 ISDNNISGSL--PACFHPLSIKQVHLSKNMLHGQLKR---GTFFNCSSLVTLDLSYNRLNGSIPD  455 (456)
Q Consensus       396 l~~~~l~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~p~  455 (456)
                      +++|.+++..  .....+++|+.|++++|.+. .++.   ..+..+++|+.|++++|++. ++|+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            6666666543  22223566777777777664 3333   35777888888888888776 5554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.3e-14  Score=135.70  Aligned_cols=311  Identities=13%  Similarity=0.101  Sum_probs=165.6

Q ss_pred             hHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCC
Q 048657           13 QIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL   92 (456)
Q Consensus        13 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l   92 (456)
                      .+|.+ |.+|+.+.+.. .++.+...+|.+|.+|+.+++.++ ++.....+|.++++|+.+.+..+ ++ .+...++..+
T Consensus        65 ~AF~~-c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~  139 (394)
T 4fs7_A           65 AAFQG-CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGC  139 (394)
T ss_dssp             TTTTT-CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTC
T ss_pred             HHhhC-CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecc
Confidence            45666 99999999974 488899899999999999999765 55566778999999999888765 33 4666677777


Q ss_pred             CCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCc
Q 048657           93 TSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDL  172 (456)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L  172 (456)
                      ..++........   ......+..+.+|+.+.+.++... ..                            ...+..+.+|
T Consensus       140 ~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~~-I~----------------------------~~~F~~c~~L  187 (394)
T 4fs7_A          140 DFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSMET-LH----------------------------NGLFSGCGKL  187 (394)
T ss_dssp             CCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCCE-EC----------------------------TTTTTTCTTC
T ss_pred             cccccccCcccc---ccchhhhcccCCCcEEecCCccce-ec----------------------------cccccCCCCc
Confidence            655544433332   234556778888988888643211 10                            1223345556


Q ss_pred             cEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEcc
Q 048657          173 EYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNS  252 (456)
Q Consensus       173 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~  252 (456)
                      +.+.+..+ +. .+....+.++..|+.+.+......  ..........|+.+.+.... . .+....             
T Consensus       188 ~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~-------------  248 (394)
T 4fs7_A          188 KSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSV-------------  248 (394)
T ss_dssp             CBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSST-------------
T ss_pred             eEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-eccccc-------------
Confidence            66665443 11 333444566677776665543221  11112223455555554321 1 111222             


Q ss_pred             CCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccc
Q 048657          253 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE  332 (456)
Q Consensus       253 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  332 (456)
                                 +..+..++.+.+..+..  .+....+..+..++.+......+.   ...+..+.+|+.+.+.++ +...
T Consensus       249 -----------f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I  311 (394)
T 4fs7_A          249 -----------FYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFI  311 (394)
T ss_dssp             -----------TTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEE
T ss_pred             -----------ccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-ccee
Confidence                       23333344444433211  222222233444444443332221   122334445555554432 2222


Q ss_pred             ccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657          333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD  398 (456)
Q Consensus       333 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  398 (456)
                      ...+|.+|++|+.+++.++ ++.....+|.+|++|+.+++..+ ++.+...+|.+|++|+++++..
T Consensus       312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            3344555555555555432 33344455555555555555544 3334445555555666555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=6.3e-16  Score=135.89  Aligned_cols=173  Identities=19%  Similarity=0.234  Sum_probs=142.8

Q ss_pred             CCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCccc
Q 048657          217 SHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLE  296 (456)
Q Consensus       217 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~  296 (456)
                      .+.++..++++++.+. .++ .+ ..+++|+.++++++.+.. ++ .+..+++|++|++++|.+. .++.  +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~-~~-~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLV-SQ-KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEE-CH-HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCcc-ccc-ch-hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence            4567778888888877 334 23 347899999999998874 44 6889999999999999998 5555  55799999


Q ss_pred             EEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCc
Q 048657          297 SLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH  376 (456)
Q Consensus       297 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  376 (456)
                      +|++++|++.+...  +.. ++|+.|++++|.+.+ . ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.
T Consensus        89 ~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           89 ELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             EEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSC
T ss_pred             EEECCCCccCCcCc--ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCc
Confidence            99999999987443  223 899999999999984 3 3688999999999999999854 3 68899999999999999


Q ss_pred             ccccCchhccCCCCCCeEeCcCCccCCCCC
Q 048657          377 LEGLIPVEFCQLDSLQILDISDNNISGSLP  406 (456)
Q Consensus       377 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  406 (456)
                      +.+.  ..+..+++|+.|++++|+++..+.
T Consensus       162 i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          162 ITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             CCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             Ccch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            9866  678899999999999999986643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=2.7e-15  Score=125.27  Aligned_cols=132  Identities=23%  Similarity=0.334  Sum_probs=100.4

Q ss_pred             cEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccc-cccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657          271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFS-RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN  349 (456)
Q Consensus       271 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  349 (456)
                      +.++++++.+. .+|..+.   .++++|++++|.+...... .+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            56777777775 6665432   3777888888777665543 36677888888888888876667778888888888888


Q ss_pred             CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCC
Q 048657          350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLP  406 (456)
Q Consensus       350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  406 (456)
                      +|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            888887777778888888888888888887777788888888888888888875433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=3.8e-17  Score=159.02  Aligned_cols=122  Identities=20%  Similarity=0.198  Sum_probs=91.6

Q ss_pred             cccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCc
Q 048657          318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS  397 (456)
Q Consensus       318 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  397 (456)
                      .|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++. | .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECC
Confidence            57888888888874 554 778888888888888887 7777888888888888888888763 4 77888888888888


Q ss_pred             CCccCCCC-Cccc-ccccccEEEccCcccCCCCCcc--cccCCCcceEEEc
Q 048657          398 DNNISGSL-PACF-HPLSIKQVHLSKNMLHGQLKRG--TFFNCSSLVTLDL  444 (456)
Q Consensus       398 ~~~l~~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~~--~~~~~~~L~~L~l  444 (456)
                      +|.+++.. +..+ .+++|+.|++++|.+.+..+..  .+..+|+|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88888774 4443 4778888888888886544322  2445788888864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=8.9e-15  Score=122.10  Aligned_cols=131  Identities=20%  Similarity=0.252  Sum_probs=89.2

Q ss_pred             cEEEccCCcccccccccccccccccEEEccCccccccccc-cccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCC
Q 048657          296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN  374 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  374 (456)
                      ++++++++++..... .+  ..++++|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            667777777754332 22  23677777777777644332 367777777777777777766677777777777777777


Q ss_pred             CcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCC
Q 048657          375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLK  429 (456)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~  429 (456)
                      |.+++..+..|..+++|+.|++++|++++..+..+. .++|++|++++|.+.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            777776666677777777777777777766555544 5677777777777654433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=3.2e-15  Score=119.44  Aligned_cols=128  Identities=22%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             cccccEEEccCcccc-ccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeE
Q 048657          316 LANLKLLQLEGNRFV-GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQIL  394 (456)
Q Consensus       316 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  394 (456)
                      .++|+.|++++|.+. +..+..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            456777777777765 45566666777777777777777644  566777777777777777776566666667777777


Q ss_pred             eCcCCccCCCC--CcccccccccEEEccCcccCCCCCc---ccccCCCcceEEEccC
Q 048657          395 DISDNNISGSL--PACFHPLSIKQVHLSKNMLHGQLKR---GTFFNCSSLVTLDLSY  446 (456)
Q Consensus       395 ~l~~~~l~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~  446 (456)
                      ++++|.+++..  .....+++|++|++++|.+.+ ++.   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence            77777777643  223336677788888777753 343   4577788888888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=8.9e-15  Score=119.47  Aligned_cols=133  Identities=29%  Similarity=0.253  Sum_probs=77.8

Q ss_pred             CCCcEEeccCCcCC-CcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEE
Q 048657          268 KFLQILDLSNNHLT-GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL  346 (456)
Q Consensus       268 ~~L~~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  346 (456)
                      +++++|++++|.+. +.++.. +..+++|++|++++|.+...  ..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            55666666666554 333333 23455666666666665543  445556666666666666654455555556666666


Q ss_pred             EcCCCcCccc-cCccccCCCCCcEEEcCCCcccccCc---hhccCCCCCCeEeCcCCccCC
Q 048657          347 HLNNNSLSGR-IPRWLGNLTWLQYIIMPNNHLEGLIP---VEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       347 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      ++++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            6666666532 12556666666666666666665444   356666666666666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=2.3e-14  Score=118.12  Aligned_cols=110  Identities=25%  Similarity=0.300  Sum_probs=50.7

Q ss_pred             CCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEcc
Q 048657          342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLS  420 (456)
Q Consensus       342 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~  420 (456)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.++..+. .++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            444444444444433333344444444444444444444334444444455555555544444333322 3445555555


Q ss_pred             CcccCCCCCcccccCCCcceEEEccCcccCCC
Q 048657          421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS  452 (456)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  452 (456)
                      +|.+. .++...|..+++|+.|++++|++++.
T Consensus       109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          109 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence            55443 34444344455555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=1.6e-13  Score=127.77  Aligned_cols=197  Identities=13%  Similarity=0.119  Sum_probs=96.4

Q ss_pred             cCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccE
Q 048657          242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL  321 (456)
Q Consensus       242 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  321 (456)
                      .+++|+.+++..+.+...-..++. +..|+.+.+.++ +. .++...+..+++|+.+.+..+ +.......|.+ .+|+.
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT  252 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred             CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence            344455555544444322222222 345555555432 33 444444445555555555442 23333333333 45555


Q ss_pred             EEccCccccccccccccCCCCCcEEEcCCCcCc-----cccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeC
Q 048657          322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS-----GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI  396 (456)
Q Consensus       322 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  396 (456)
                      +.+.. .+......+|.+|++|+.+.+.++.+.     .....+|.+|++|+.+++.+ .+..+...+|..|++|+.+.+
T Consensus       253 i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          253 VKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred             EEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence            55532 233233445555666666665554432     23445566666666666663 344455556666666666666


Q ss_pred             cCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCC-cceEEEccCc
Q 048657          397 SDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCS-SLVTLDLSYN  447 (456)
Q Consensus       397 ~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~  447 (456)
                      ..+ ++......+...+|+.+++.+|... .++...|.+++ +++.|.+-.+
T Consensus       331 p~~-l~~I~~~aF~~~~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNTGIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CTT-CCEECTTSSSSSCCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGG
T ss_pred             Ccc-ccEEcHHhCCCCCCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHH
Confidence            443 4444444444226666666666553 45555566553 4566665544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=1.4e-13  Score=128.12  Aligned_cols=242  Identities=13%  Similarity=0.091  Sum_probs=182.4

Q ss_pred             ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657          193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  272 (456)
Q Consensus       193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  272 (456)
                      .+..++.+.+.+. +.......|..+ +|+.+.+..+ +. .++...+.. .+|+.+.+.. .+...-..+|..|++|+.
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            3455555655442 233333445554 6788887654 33 344444443 4688888875 444444567899999999


Q ss_pred             EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCc
Q 048657          273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNS  352 (456)
Q Consensus       273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  352 (456)
                      +++.++.+. .++...+. +.+|+.+.+..+ +.......|.++++|+.+.+.++ +......+|.. .+|+.+.+. +.
T Consensus       185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            999999887 78777764 789999999854 66666778889999999999875 44355566766 789999995 45


Q ss_pred             CccccCccccCCCCCcEEEcCCCccc-----ccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCC
Q 048657          353 LSGRIPRWLGNLTWLQYIIMPNNHLE-----GLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHG  426 (456)
Q Consensus       353 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~  426 (456)
                      ++.....+|.+|++|+.+++.++.+.     .....+|..|++|+.+++.+ .++......+. +.+|+.+.+..+ + .
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l-~  335 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V-T  335 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C-C
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c-c
Confidence            66577889999999999999988764     46778999999999999995 47766666666 689999999766 4 5


Q ss_pred             CCCcccccCCCcceEEEccCcccC
Q 048657          427 QLKRGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       427 ~~~~~~~~~~~~L~~L~l~~~~l~  450 (456)
                      .++..+|.++ +|+.+++.+|.+.
T Consensus       336 ~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          336 QINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             EECTTSSSSS-CCCEEEECCSSCC
T ss_pred             EEcHHhCCCC-CCCEEEEcCCCCc
Confidence            7888899999 9999999998765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=3.6e-14  Score=118.34  Aligned_cols=126  Identities=27%  Similarity=0.344  Sum_probs=79.4

Q ss_pred             cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657          296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN  375 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  375 (456)
                      +.++++++.+...... +  .++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4566666666543322 1  346677777777666 45566666677777777777766555566666777777777777


Q ss_pred             cccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657          376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH  425 (456)
Q Consensus       376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~  425 (456)
                      .++...+..|..+++|+.|++++|.++..++..+. .++|+.+++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            76666666666666777777777766655544433 456666666666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=2.2e-16  Score=153.61  Aligned_cols=182  Identities=20%  Similarity=0.237  Sum_probs=128.9

Q ss_pred             CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCc-------------ccccccccccccccccEEE-ccCccccc
Q 048657          266 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN-------------LEGHMFSRNFNLANLKLLQ-LEGNRFVG  331 (456)
Q Consensus       266 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~  331 (456)
                      .++.|+.|+++++.+. .+|..+. .+++|+.|+++++.             ..+..+..+..+++|+.|+ +..+.+..
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            4555666666666554 5554443 45556655554442             2233344555666777776 44443221


Q ss_pred             cccc------ccc--CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657          332 EIPQ------SLS--KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       332 ~~~~------~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                       ++.      .+.  ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus       425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence             100      000  11359999999999984 676 999999999999999999 667899999999999999999997


Q ss_pred             CCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657          404 SLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       404 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                      .+ ....+++|+.|++++|.+.+...+..|..+++|+.|++++|++++..|
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            54 555588999999999999755414448999999999999999997755

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1.3e-14  Score=115.86  Aligned_cols=127  Identities=26%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CCCcEEeccCCcCC-CcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEE
Q 048657          268 KFLQILDLSNNHLT-GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL  346 (456)
Q Consensus       268 ~~L~~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  346 (456)
                      ++++.|++++|.+. +.++.. +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34455555555443 233322 12344555555555544433  334445555555555555554344444455566666


Q ss_pred             EcCCCcCccc-cCccccCCCCCcEEEcCCCcccccCc---hhccCCCCCCeEeCc
Q 048657          347 HLNNNSLSGR-IPRWLGNLTWLQYIIMPNNHLEGLIP---VEFCQLDSLQILDIS  397 (456)
Q Consensus       347 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  397 (456)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666655532 22455556666666666666554443   345555666665554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=2.2e-15  Score=151.24  Aligned_cols=182  Identities=25%  Similarity=0.281  Sum_probs=113.6

Q ss_pred             CccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccccc
Q 048657          259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS  338 (456)
Q Consensus       259 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  338 (456)
                      ..+..+..++.|+.|++++|.+. .++..++ .+++|++|++++|.+. .++..+..+++|+.|+|++|.++ .+|..+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            34667788889999999999887 7777665 6888999999999888 45566788899999999999988 7788888


Q ss_pred             CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCC-CCCeEeCcCCccCCCCCcccccccccEE
Q 048657          339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD-SLQILDISDNNISGSLPACFHPLSIKQV  417 (456)
Q Consensus       339 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~l  417 (456)
                      .+++|++|++++|.++ .+|..|..+++|+.|+|++|.+.+.++..+.... .+..+++++|.+++..+     ..++.|
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l  364 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFI  364 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC----
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----ccccee
Confidence            9999999999999887 7788899999999999999999877776665432 22346788888876554     356777


Q ss_pred             EccCcc----cCCCCCc---ccccCCCcceEEEccCcccC
Q 048657          418 HLSKNM----LHGQLKR---GTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       418 ~l~~~~----~~~~~~~---~~~~~~~~L~~L~l~~~~l~  450 (456)
                      +++.|.    ..+.++.   ..+.++..+....+++|-+.
T Consensus       365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -------------------------------------CCC
T ss_pred             EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            777661    1122221   12444556666777777665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=115.07  Aligned_cols=128  Identities=25%  Similarity=0.273  Sum_probs=90.8

Q ss_pred             cEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCC
Q 048657          271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN  350 (456)
Q Consensus       271 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  350 (456)
                      +.++++++.+. .+|..+   .+++++|++++|.+.... ..+..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            45666666665 555433   346777777777766433 5566777777777777777765566677778888888888


Q ss_pred             CcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657          351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       351 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      |.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            87776666677778888888888888776666667777888888888877653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=2.4e-14  Score=117.81  Aligned_cols=107  Identities=21%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             CCcccEEEccCCccccccccccccc-ccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEE
Q 048657          292 CVNLESLALSNNNLEGHMFSRNFNL-ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI  370 (456)
Q Consensus       292 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  370 (456)
                      +.+|++|++++|.+... + .+..+ ++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus        18 ~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            44555555555555432 1 12222 2555555555555422  344455555555555555543222333445555555


Q ss_pred             EcCCCcccccCc-hhccCCCCCCeEeCcCCccC
Q 048657          371 IMPNNHLEGLIP-VEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       371 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++++|.++.... ..+..+++|+.|++++|+++
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence            555555542211 13444555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=1.7e-13  Score=112.83  Aligned_cols=132  Identities=23%  Similarity=0.189  Sum_probs=88.1

Q ss_pred             CcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657          270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN  349 (456)
Q Consensus       270 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  349 (456)
                      .+.++++++.+. .+|...   .+++++|++++|++.+.....+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            356666666665 555332   3567777777777665555555667777777777777764444556677777777777


Q ss_pred             CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCC
Q 048657          350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL  405 (456)
Q Consensus       350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  405 (456)
                      +|.+++..+..+..+++|+.|++++|.+++.++..+..+++|+.|++++|++.+..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            77777555556677777777777777777665555667777777777777776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.52  E-value=2.9e-12  Score=119.81  Aligned_cols=128  Identities=13%  Similarity=0.192  Sum_probs=60.0

Q ss_pred             cCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcE
Q 048657          290 VGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQY  369 (456)
Q Consensus       290 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  369 (456)
                      ..+..|+.+.+.... .......|.++++|+.+.+.. .+......+|..|.+|+.+++..+ ++.....+|.+|++|+.
T Consensus       262 ~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          262 DSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            344455555544321 122223344555555555542 222233445666666666666543 44344556666666666


Q ss_pred             EEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcc
Q 048657          370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNM  423 (456)
Q Consensus       370 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~  423 (456)
                      +.+..+ ++.+...+|.+|++|+.+++.++....  .....+..|+.+.+..+.
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence            666543 444555666666666666666654321  122234556666555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=8.6e-15  Score=147.00  Aligned_cols=190  Identities=22%  Similarity=0.254  Sum_probs=113.6

Q ss_pred             CcceEEEccCCccCCCccccccCCCCCcEEeccC-----CcCCCcccchhhcCCCcccEEEccCCccccccccccccccc
Q 048657          244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-----NHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLAN  318 (456)
Q Consensus       244 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  318 (456)
                      +.+..+++..+.+.. .+..+.....|..+.+..     +.+  .++...+..++.|+.|++++|.+.... ..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCSCCC-GGGGGCCS
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCC-hhhcCCCC
Confidence            457777787776653 333332333333333322     222  123344457889999999999988543 44458899


Q ss_pred             ccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657          319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD  398 (456)
Q Consensus       319 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  398 (456)
                      |+.|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|.++ .+|..|..+++|+.|+|++
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            999999999998 78888999999999999999998 77889999999999999999997 4566799999999999999


Q ss_pred             CccCCCCCcccccc--cccEEEccCcccCCCCCcccccCCCcceEEEccCc
Q 048657          399 NNISGSLPACFHPL--SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN  447 (456)
Q Consensus       399 ~~l~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  447 (456)
                      |++++.++..+...  ....+++++|.+.+.+|.       .|+.|+++.|
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n  369 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD  369 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence            99988777666432  334577889988765554       3455666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=1.2e-13  Score=113.52  Aligned_cols=134  Identities=21%  Similarity=0.221  Sum_probs=100.4

Q ss_pred             ccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCC
Q 048657          264 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL  343 (456)
Q Consensus       264 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  343 (456)
                      +..+++|+.|++++|.+. .++. +....++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            455777888888888776 5543 332345888888888887764  566778888999999988874444445788899


Q ss_pred             cEEEcCCCcCccccCc--cccCCCCCcEEEcCCCcccccCch---hccCCCCCCeEeCcCCccC
Q 048657          344 EGLHLNNNSLSGRIPR--WLGNLTWLQYIIMPNNHLEGLIPV---EFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       344 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++|++++|.++ .++.  .+..+++|+.|++++|.+......   .+..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999886 4454  788889999999999988754332   4778889999999888754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.45  E-value=5.8e-12  Score=117.72  Aligned_cols=132  Identities=11%  Similarity=0.166  Sum_probs=76.2

Q ss_pred             cccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCC
Q 048657          310 FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD  389 (456)
Q Consensus       310 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  389 (456)
                      ...|..+..|+.+.+.+.... ....+|.+++.|+.+.+.. .++.....+|.+|++|+.+++..+ ++.+...+|.+|+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            345566777777777654433 4455667777777777753 344455567777777777777654 4445566777777


Q ss_pred             CCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657          390 SLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL  449 (456)
Q Consensus       390 ~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  449 (456)
                      +|+++.+..+ ++......+. +.+|+.+++.++...  .  ..|..+.+|+.+.+..+.+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H--HTCBCCCCC----------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h--hhhhccCCCCEEEeCCCCE
Confidence            7777777543 5444444444 577777777776431  1  2356667777777765543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=5.8e-12  Score=102.59  Aligned_cols=105  Identities=22%  Similarity=0.284  Sum_probs=72.9

Q ss_pred             cccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCc
Q 048657          318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS  397 (456)
Q Consensus       318 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  397 (456)
                      ..+.++++++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3467777777776 455444  3677777777777776666777777777777777777776666666777777777777


Q ss_pred             CCccCCCCCcccc-cccccEEEccCcccC
Q 048657          398 DNNISGSLPACFH-PLSIKQVHLSKNMLH  425 (456)
Q Consensus       398 ~~~l~~~~~~~~~-~~~L~~l~l~~~~~~  425 (456)
                      +|++++.++..+. .++|+.|++++|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            7777766655443 567777777777664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=4.7e-15  Score=124.60  Aligned_cols=132  Identities=24%  Similarity=0.276  Sum_probs=63.6

Q ss_pred             CCCCCcEEeccCCcCCCcccc-----hhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCC
Q 048657          266 NMKFLQILDLSNNHLTGEIPE-----HLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC  340 (456)
Q Consensus       266 ~~~~L~~L~l~~~~l~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  340 (456)
                      ..+.++.++++.+.+.+..+.     ..+..+++|++|++++|.+.+..  .+..+++|+.|++++|.+. .+|..+..+
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            344555555555555433332     01224555555555555554422  4445555555555555554 344444444


Q ss_pred             CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCc-hhccCCCCCCeEeCcCCccC
Q 048657          341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIP-VEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++|++|++++|.+++ ++ .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|++.
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            555555555555542 22 34445555555555555543221 23444555555555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=1.1e-11  Score=101.26  Aligned_cols=103  Identities=24%  Similarity=0.360  Sum_probs=75.4

Q ss_pred             cEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCC
Q 048657          320 KLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN  399 (456)
Q Consensus       320 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  399 (456)
                      +.++++++.+. .+|..+.  ++|++|++++|.+++..+..|.++++|+.|++++|.+++.++..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57777777776 5555443  67888888888887666777778888888888888887666666777788888888888


Q ss_pred             ccCCCCCcccc-cccccEEEccCcccC
Q 048657          400 NISGSLPACFH-PLSIKQVHLSKNMLH  425 (456)
Q Consensus       400 ~l~~~~~~~~~-~~~L~~l~l~~~~~~  425 (456)
                      ++++.++..+. +++|+.|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            87766655343 667777777777774

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=3.1e-14  Score=119.52  Aligned_cols=133  Identities=22%  Similarity=0.237  Sum_probs=85.9

Q ss_pred             cccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCC
Q 048657          263 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSS  342 (456)
Q Consensus       263 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  342 (456)
                      .+..+++|++|++++|.+. .++  .+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+ .+ .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            5666677777777777666 454  23356677777777776664 23344455777777777777763 33 5666777


Q ss_pred             CcEEEcCCCcCccccC-ccccCCCCCcEEEcCCCcccccCch----------hccCCCCCCeEeCcCCccCC
Q 048657          343 LEGLHLNNNSLSGRIP-RWLGNLTWLQYIIMPNNHLEGLIPV----------EFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       343 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~l~~  403 (456)
                      |++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+.          .+..+++|+.|+  ++.++.
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            7777777777763222 3567777888888888877554332          366778888776  555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=3.1e-13  Score=124.52  Aligned_cols=137  Identities=18%  Similarity=0.147  Sum_probs=76.1

Q ss_pred             CCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccc-----cccccccEEEccCcccccc----cccccc
Q 048657          268 KFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN-----FNLANLKLLQLEGNRFVGE----IPQSLS  338 (456)
Q Consensus       268 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~  338 (456)
                      ++|++|++++|.+.+.....+...+++|++|++++|.+++.....+     ...++|++|++++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4666666666666533333333344566666666666654333222     1245666666666666432    233345


Q ss_pred             CCCCCcEEEcCCCcCcccc----CccccCCCCCcEEEcCCCcccccC----chhccCCCCCCeEeCcCCccCCC
Q 048657          339 KCSSLEGLHLNNNSLSGRI----PRWLGNLTWLQYIIMPNNHLEGLI----PVEFCQLDSLQILDISDNNISGS  404 (456)
Q Consensus       339 ~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~  404 (456)
                      .+++|++|++++|.+++..    ...+..+++|++|++++|.++...    +..+...++|+.|++++|.++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            5666777777777665432    344555666777777776665432    23334456667777776666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=1.9e-11  Score=99.53  Aligned_cols=106  Identities=21%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657          296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN  375 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  375 (456)
                      +.++++++.++..... +  .++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4444555444432211 1  255666666666666544555666666666666666666555555666666777777777


Q ss_pred             cccccCchhccCCCCCCeEeCcCCccCCC
Q 048657          376 HLEGLIPVEFCQLDSLQILDISDNNISGS  404 (456)
Q Consensus       376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  404 (456)
                      .+++..+..|..+++|+.|++++|++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            66655555566666777777777766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.28  E-value=6e-10  Score=103.54  Aligned_cols=130  Identities=18%  Similarity=0.213  Sum_probs=68.4

Q ss_pred             ccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCC
Q 048657          264 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL  343 (456)
Q Consensus       264 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  343 (456)
                      +..+..++.+.+..+ +. .+....+..+..|+.+.+..+ ++......+..+.+|+.+.+... +.......|..|++|
T Consensus       213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            344555555555433 22 333333445555666655443 33333344455556666665433 222333455666666


Q ss_pred             cEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657          344 EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD  398 (456)
Q Consensus       344 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  398 (456)
                      +.+.+.++.++.....+|.+|++|+.+.+..+ ++.+...+|.+|++|+++.+..
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            66666655555445556666666666666543 3334455666666666666644

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.26  E-value=6.1e-10  Score=103.52  Aligned_cols=142  Identities=17%  Similarity=0.167  Sum_probs=105.0

Q ss_pred             cCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccE
Q 048657          242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL  321 (456)
Q Consensus       242 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  321 (456)
                      ....++.+.+... +...-..++..+..|+.+.+..+ +. .+....+..+.+|+.+.+... +.......|.++.+|+.
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            3567777777543 22233446778889999999765 44 666666777889999988654 44455567788999999


Q ss_pred             EEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCC
Q 048657          322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD  389 (456)
Q Consensus       322 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  389 (456)
                      +.+.++.+......+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+.+..+ ++.+...+|.++.
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            999888777566778999999999999754 65566778999999999999765 5545667777664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=4.3e-11  Score=97.75  Aligned_cols=88  Identities=23%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             ccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeC
Q 048657          317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI  396 (456)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  396 (456)
                      ++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+.++..|..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            45566666666665444555666666666666666666444444566666777777777666555555666677777777


Q ss_pred             cCCccCCC
Q 048657          397 SDNNISGS  404 (456)
Q Consensus       397 ~~~~l~~~  404 (456)
                      ++|++...
T Consensus       113 ~~N~~~c~  120 (174)
T 2r9u_A          113 YNNPWDCE  120 (174)
T ss_dssp             CSSCBCTT
T ss_pred             CCCCcccc
Confidence            77766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=2.2e-12  Score=118.88  Aligned_cols=183  Identities=17%  Similarity=0.135  Sum_probs=125.0

Q ss_pred             CCCCcEEeccCCcCCCcccchhh----cCCCcccEEEccCCcccccccccc-cccccccEEEccCccccccccccc----
Q 048657          267 MKFLQILDLSNNHLTGEIPEHLA----VGCVNLESLALSNNNLEGHMFSRN-FNLANLKLLQLEGNRFVGEIPQSL----  337 (456)
Q Consensus       267 ~~~L~~L~l~~~~l~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~----  337 (456)
                      .+.|+.|++++|.+.......+.    ...++|++|++++|.+++.....+ ..+++|+.|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            45678888888887632222221    134689999999999876444333 246789999999999975433333    


Q ss_pred             -cCCCCCcEEEcCCCcCccc----cCccccCCCCCcEEEcCCCcccccC----chhccCCCCCCeEeCcCCccCCCCCcc
Q 048657          338 -SKCSSLEGLHLNNNSLSGR----IPRWLGNLTWLQYIIMPNNHLEGLI----PVEFCQLDSLQILDISDNNISGSLPAC  408 (456)
Q Consensus       338 -~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~  408 (456)
                       ...+.|++|++++|.+++.    ++..+..+++|++|++++|.+++..    +..+...++|+.|++++|.++......
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3578999999999998753    3445577899999999999987543    456677889999999999987644333


Q ss_pred             cc-----cccccEEEccCcccCCCCCcccccCC---C--cceEEE--ccCcccC
Q 048657          409 FH-----PLSIKQVHLSKNMLHGQLKRGTFFNC---S--SLVTLD--LSYNRLN  450 (456)
Q Consensus       409 ~~-----~~~L~~l~l~~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~l~  450 (456)
                      +.     .++|++|++++|.+.+ .....+...   .  .++.+.  +..+.++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~-~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS-EGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH-HHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH-HHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            22     5789999999999853 333334322   1  166666  5555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=1.9e-10  Score=105.51  Aligned_cols=96  Identities=27%  Similarity=0.308  Sum_probs=56.2

Q ss_pred             cccchhhhHHhhcCCCccEEeccC-CCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccccc
Q 048657            6 ALNTSFLQIIGESMPSLKYLSLSD-SNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSI   84 (456)
Q Consensus         6 ~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~   84 (456)
                      ++++ +|. ++. +++|++|+|++ |.++.++...|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+
T Consensus        20 ~l~~-ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~   95 (347)
T 2ifg_A           20 ALDS-LHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL   95 (347)
T ss_dssp             CCTT-TTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CC
T ss_pred             CCCc-cCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-ee
Confidence            4443 455 555 66666666664 5566666555666666666666666666555556666666666666666665 45


Q ss_pred             CCCCCcCCCCccEEEcCCceee
Q 048657           85 SSSPLVHLTSIEELMLSNNHFQ  106 (456)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~~~~~  106 (456)
                      +...+..++ |++|++.+|.+.
T Consensus        96 ~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           96 SWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSTTTCSCC-CCEEECCSSCCC
T ss_pred             CHHHcccCC-ceEEEeeCCCcc
Confidence            543444443 666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=6.4e-10  Score=102.05  Aligned_cols=104  Identities=21%  Similarity=0.140  Sum_probs=74.3

Q ss_pred             EEEccCC-cccccccccccccccccEEEccC-ccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCC
Q 048657          297 SLALSNN-NLEGHMFSRNFNLANLKLLQLEG-NRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN  374 (456)
Q Consensus       297 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  374 (456)
                      .++.+++ +++.. +. +..+.+|+.|+|++ |.+.+..+..|..+++|+.|++++|.+++..+..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566666 66653 33 66777788888875 777755556677788888888888887766677777788888888888


Q ss_pred             CcccccCchhccCCCCCCeEeCcCCccCC
Q 048657          375 NHLEGLIPVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      |.+++.++..+..++ |+.|++.+|++..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            887766665665554 8888888877764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=4.9e-09  Score=95.66  Aligned_cols=136  Identities=16%  Similarity=0.175  Sum_probs=62.0

Q ss_pred             cccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccccc--ccccccEEEccCc--ccccc-----c
Q 048657          263 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF--NLANLKLLQLEGN--RFVGE-----I  333 (456)
Q Consensus       263 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~~~-----~  333 (456)
                      .+..+|+|+.|.++++.-. .++. +  ..++|++|.+..|.+.......+.  .+++|++|+|+.+  ...+.     +
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            3445566666666554211 1111 1  245566666665555433332222  4556666655321  11000     1


Q ss_pred             cccc--cCCCCCcEEEcCCCcCccccCccc---cCCCCCcEEEcCCCcccccCc----hhccCCCCCCeEeCcCCccC
Q 048657          334 PQSL--SKCSSLEGLHLNNNSLSGRIPRWL---GNLTWLQYIIMPNNHLEGLIP----VEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       334 ~~~~--~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ...+  ..+++|+.|++.+|.+.+..+..+   ..+++|++|+|+.|.+++..+    ..+..+++|+.|++++|.++
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            1111  235666666666665543222222   135566666666665554322    12233456666666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.72  E-value=1.3e-08  Score=92.85  Aligned_cols=178  Identities=13%  Similarity=0.137  Sum_probs=107.4

Q ss_pred             ccCCCCCcEEeccCCcCC---------CcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccc
Q 048657          264 FGNMKFLQILDLSNNHLT---------GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIP  334 (456)
Q Consensus       264 l~~~~~L~~L~l~~~~l~---------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  334 (456)
                      +..+++|+.|.+.+....         +.+ ..+...+|+|+.|.++++.-....  .+ ..++|+.|++..+.+.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTCBCC--SC-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCceec--cc-cCCCCcEEEEecCCCChHHH
Confidence            445667777766543221         012 233456899999999887311211  12 37899999999888764333


Q ss_pred             cccc--CCCCCcEEEcCCC--cC-cc----ccCccc--cCCCCCcEEEcCCCcccccCchhcc---CCCCCCeEeCcCCc
Q 048657          335 QSLS--KCSSLEGLHLNNN--SL-SG----RIPRWL--GNLTWLQYIIMPNNHLEGLIPVEFC---QLDSLQILDISDNN  400 (456)
Q Consensus       335 ~~~~--~l~~L~~L~l~~~--~~-~~----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~  400 (456)
                      ..+.  .+|+|+.|+++.+  .. .+    .+...+  ..+++|+.|++.+|.+++..+..+.   .+++|++|+++.|.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            3333  6899999998531  11 11    111122  2478999999999988754333332   57889999999998


Q ss_pred             cCCCCCcc-----cccccccEEEccCcccCCCCCcccccC-CCcceEEEccCcc
Q 048657          401 ISGSLPAC-----FHPLSIKQVHLSKNMLHGQLKRGTFFN-CSSLVTLDLSYNR  448 (456)
Q Consensus       401 l~~~~~~~-----~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~  448 (456)
                      +.+.....     -.+++|+.|++++|.+... ....+.. +  ...+++++++
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~-~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDE-MKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH-HHHHHHHHC--CSEEECCSBC
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCcCCHH-HHHHHHHHc--CCEEEecCCc
Confidence            87642211     1257899999998876422 2221221 1  2557777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.61  E-value=1.7e-08  Score=83.10  Aligned_cols=120  Identities=20%  Similarity=0.171  Sum_probs=89.2

Q ss_pred             hhhhHHhhcCCCccEEeccCC-CCCCccc----ccccCCCCCcEEEcccCccccc----chhhhhcCCCCcEEeccCCcc
Q 048657           10 SFLQIIGESMPSLKYLSLSDS-NSSRILD----RGLCSLVHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQL   80 (456)
Q Consensus        10 ~~~~~~~~~~~~L~~L~L~~~-~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i   80 (456)
                      .+...+.. .+.|++|+|++| .+++...    +.+...+.|++|+|++|.+.+.    +...+...+.|++|++++|.+
T Consensus        27 ~l~~~l~~-~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           27 TLKRIQNN-DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHTT-CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            34445555 899999999999 7776433    3556789999999999998753    345566678999999999998


Q ss_pred             ccc----cCCCCCcCCCCccEEEc--CCceeeecc---CCCcccccccceEEeccCcccc
Q 048657           81 TGS----ISSSPLVHLTSIEELML--SNNHFQIPI---SLEPFFNHSRLKFFYAENNQIN  131 (456)
Q Consensus        81 ~~~----~~~~~~~~l~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~  131 (456)
                      ++.    +.. ++...++|++|++  ++|.+....   ....+...++|++|++++|.+.
T Consensus       106 ~~~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          106 SGSGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CHHHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CHHHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            832    333 5677889999999  888887321   2334556688999999988774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=3.1e-08  Score=79.26  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             CCccEEeccCCCCCCcccccccCCCCCcEEEcccCc-ccccchhhhhcC----CCCcEEeccCCc-cccccCCCCCcCCC
Q 048657           20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNND-LRGSLPWCLANM----TSLRILDVSSNQ-LTGSISSSPLVHLT   93 (456)
Q Consensus        20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-i~~~~~~~~~~~l~   93 (456)
                      ..|+.||+++|.+++.....+.+|++|++|+|++|. +++..-..++.+    ++|++|++++|. +|+. .-..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCC
Confidence            357777777777666665666677777777777773 555444555543    367777777763 5522 111355566


Q ss_pred             CccEEEcCCce
Q 048657           94 SIEELMLSNNH  104 (456)
Q Consensus        94 ~L~~L~l~~~~  104 (456)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            67777766663

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.49  E-value=4.7e-08  Score=80.40  Aligned_cols=19  Identities=21%  Similarity=0.155  Sum_probs=10.3

Q ss_pred             cccCCCCCcEEeccCC-cCC
Q 048657          263 SFGNMKFLQILDLSNN-HLT  281 (456)
Q Consensus       263 ~l~~~~~L~~L~l~~~-~l~  281 (456)
                      .+...+.|++|++++| .+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~   50 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIP   50 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCC
T ss_pred             HHhcCCCCCEEEecCCCCCC
Confidence            3444555666666555 554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=2.9e-08  Score=79.42  Aligned_cols=34  Identities=9%  Similarity=0.140  Sum_probs=15.8

Q ss_pred             cccEEEccCCcccccccccccccccccEEEccCc
Q 048657          294 NLESLALSNNNLEGHMFSRNFNLANLKLLQLEGN  327 (456)
Q Consensus       294 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  327 (456)
                      +|+++++++|.+++.....+..+++|++|++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3555555555544443333444444444444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.18  E-value=1.9e-06  Score=74.43  Aligned_cols=80  Identities=24%  Similarity=0.265  Sum_probs=44.0

Q ss_pred             CCCCCcEEEcccCcccc--cchhhhhcCCCCcEEeccCCccccccCCCCCcCCC--CccEEEcCCceeeeccC------C
Q 048657           42 SLVHLQELYIDNNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT--SIEELMLSNNHFQIPIS------L  111 (456)
Q Consensus        42 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~------~  111 (456)
                      ++++|++|+|++|.+++  .++..+..+++|++|+|++|.++ .+.  .+..++  +|++|.+++|.+....+      .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cch--hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            45666666666666654  23345556666666666666666 332  123333  66666666666542211      1


Q ss_pred             CcccccccceEEe
Q 048657          112 EPFFNHSRLKFFY  124 (456)
Q Consensus       112 ~~~~~~~~L~~l~  124 (456)
                      ..+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2344566666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.00  E-value=6.5e-06  Score=71.08  Aligned_cols=62  Identities=26%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             cccccEEEccCccccc--cccccccCCCCCcEEEcCCCcCccccCccccCCC--CCcEEEcCCCcccc
Q 048657          316 LANLKLLQLEGNRFVG--EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLT--WLQYIIMPNNHLEG  379 (456)
Q Consensus       316 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~  379 (456)
                      +++|+.|+|++|.+.+  .++..+..+++|+.|++++|.+.+.  +.+..+.  +|++|++++|.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            4555555555555543  1223344555555666655555432  1122222  55555555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.33  E-value=0.0001  Score=60.03  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=17.5

Q ss_pred             cCCCCCcEEEcCCCcCcccc----CccccCCCCCcEEEcCCCccc
Q 048657          338 SKCSSLEGLHLNNNSLSGRI----PRWLGNLTWLQYIIMPNNHLE  378 (456)
Q Consensus       338 ~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~  378 (456)
                      ..-+.|++|++++|++.+..    .+.+...++|++|+|+.|.|+
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            33444444444444444222    222233444555555554444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.31  E-value=0.00013  Score=59.44  Aligned_cols=83  Identities=16%  Similarity=0.101  Sum_probs=38.0

Q ss_pred             ccccEEEccCcccccc----ccccccCCCCCcEEEcCCCcCccc----cCccccCCCCCcEEEcCCC---cccc----cC
Q 048657          317 ANLKLLQLEGNRFVGE----IPQSLSKCSSLEGLHLNNNSLSGR----IPRWLGNLTWLQYIIMPNN---HLEG----LI  381 (456)
Q Consensus       317 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~---~~~~----~~  381 (456)
                      ..|+.|+|++|.+.+.    +...+..-+.|++|++++|.+++.    +.+.+...+.|++|+|+++   .+..    .+
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            3444444444444321    223333445555555555555432    2234444555666666543   2221    12


Q ss_pred             chhccCCCCCCeEeCcCC
Q 048657          382 PVEFCQLDSLQILDISDN  399 (456)
Q Consensus       382 ~~~~~~~~~L~~L~l~~~  399 (456)
                      ...+..-++|++|+++.+
T Consensus       150 a~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCCcCeEeccCC
Confidence            233444455666666544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.75  E-value=0.00097  Score=50.64  Aligned_cols=55  Identities=18%  Similarity=0.251  Sum_probs=32.8

Q ss_pred             EEeccCCCCC--CcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657           24 YLSLSDSNSS--RILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus        24 ~L~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      +++-+++.++  .++. .+.  ++|++|+|++|.++...+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC-CCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5555555555  5552 221  25677777777776555556666777777777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.75  E-value=0.0032  Score=47.76  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=20.9

Q ss_pred             cccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657          411 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL  449 (456)
Q Consensus       411 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  449 (456)
                      +.+++.|+|++|.+. .++.+.|..+++|+.|+|++|++
T Consensus        30 p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           30 PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence            334555555555553 45555555555666666665553

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=85.14  E-value=0.97  Score=31.97  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=25.5

Q ss_pred             CccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657          353 LSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD  398 (456)
Q Consensus       353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  398 (456)
                      ++.+...+|.+|++|+.+.|..+ ++.+...+|..|.+|+.+.+.+
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            34444456666666666666553 2334455666666666666654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=81.71  E-value=1.4  Score=31.13  Aligned_cols=45  Identities=11%  Similarity=0.055  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccC
Q 048657           32 SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS   77 (456)
Q Consensus        32 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   77 (456)
                      ++.+...+|.+|..|+.+.+..+ ++.....+|.+|.+|+.+.+..
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            45555555556666666655443 2223344555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.5 bits (218), Expect = 8e-20
 Identities = 72/364 (19%), Positives = 130/364 (35%), Gaps = 30/364 (8%)

Query: 43  LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
           L  +  L  D   ++ S+   +  + +L  ++ S+NQLT      PL +LT + +++++N
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNN 97

Query: 103 NHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF 162
           N       L    N + L  F  +   I+     ++         +   +S+        
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 163 PKFLYHQH-------DLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPI 215
                +Q        +L  ++   I  N      +L   T L  L   N+ ++     P+
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PL 215

Query: 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 275
                L  L ++ N  +    +     L +L   + + N +    P     +  L  L L
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ 335
             N ++   P        N     L  N  +    S   NL NL  L L  N      P 
Sbjct: 271 GANQISNISPLAGLTALTN-----LELNENQLEDISPISNLKNLTYLTLYFNNISDISP- 324

Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
            +S  + L+ L   NN +S      L NLT + ++   +N +  L P     L  +  L 
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 379

Query: 396 ISDN 399
           ++D 
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 6e-17
 Identities = 60/411 (14%), Positives = 114/411 (27%), Gaps = 52/411 (12%)

Query: 42  SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 101
           +L    +  +   ++  ++     ++  +  L      +    S   + +L ++ ++  S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 74

Query: 102 NNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT 161
           NN       L+       +     +   I      ++      F      +         
Sbjct: 75  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQL 221
               L      +   LS +    +        + K +      + L              
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 222 RL-----LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS 276
           +L     L  + N      P+ I   L  L +  N +         +  ++  L  LDL+
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLA 249

Query: 277 NNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQS 336
           NN ++   P     G   L  L L  N +                   E N    E    
Sbjct: 250 NNQISNLAPLS---GLTKLTELKLGANQISNISPLAGLTALTNL----ELNENQLEDISP 302

Query: 337 LSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396
           +S   +L  L L  N++S   P  + +LT LQ +   NN +          L ++  L  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 397 SDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447
             N IS   P                            N + +  L L+  
Sbjct: 359 GHNQISDLTP--------------------------LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 5e-14
 Identities = 71/390 (18%), Positives = 135/390 (34%), Gaps = 40/390 (10%)

Query: 65  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY 124
             +       +    +T ++S +    L  +  L       +   S++     + L    
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 72

Query: 125 AENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNG 184
             NNQ+        + I P   L++L       + +     L +  +L  + L + ++  
Sbjct: 73  FSNNQL--------TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 185 EFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLP 244
             P   L N  +L                 I     L  L        G+   ++  +  
Sbjct: 125 IDPLKNLTNLNRLEL-----------SSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173

Query: 245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN 304
              +    +++   S  S    +  L+ L  +NN ++   P  +     NL+ L+L+ N 
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 230

Query: 305 LEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNL 364
           L+        +L NL  L L  N+     P  LS  + L  L L  N +S   P     L
Sbjct: 231 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GL 284

Query: 365 TWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNML 424
           T L  + +  N LE         L +L  L +  NNIS   P       ++++  + N +
Sbjct: 285 TALTNLELNENQLE--DISPISNLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFANNKV 341

Query: 425 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
                  +  N +++  L   +N+++   P
Sbjct: 342 SDV---SSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 7e-08
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 8   NTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANM 67
           N         ++ +L YL+L  +N S I    + SL  LQ L+  NN +       LAN+
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VSSLANL 350

Query: 68  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 103
           T++  L    NQ++      PL +LT I +L L++ 
Sbjct: 351 TNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 1e-14
 Identities = 48/245 (19%), Positives = 88/245 (35%), Gaps = 4/245 (1%)

Query: 213 LPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272
           +P+      + + +  N     +P        +L +     N L     ++F  +  L+ 
Sbjct: 26  VPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE 332
           LDLS+N     +      G   L +L L    L+         LA L+ L L+ N     
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392
              +     +L  L L+ N +S    R    L  L  +++  N +  + P  F  L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 393 ILDISDNNISGSLPACFHP-LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451
            L +  NN+S        P  +++ + L+ N      +    +  + L     S + +  
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPC 262

Query: 452 SIPDW 456
           S+P  
Sbjct: 263 SLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 3e-13
 Identities = 41/221 (18%), Positives = 70/221 (31%), Gaps = 3/221 (1%)

Query: 234 HIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 293
            +PV I      +++  N    +     +SF   + L IL L +N L            +
Sbjct: 25  AVPVGIPAASQRIFLHGNR---ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 294 NLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSL 353
             +     N  L     +    L  L  L L+        P      ++L+ L+L +N+L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 354 SGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS 413
                    +L  L ++ +  N +  +    F  L SL  L +  N ++   P  F  L 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 414 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
                         L         +L  L L+ N       
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 57/257 (22%), Positives = 85/257 (33%), Gaps = 5/257 (1%)

Query: 170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTN 229
              + + L   +++   P         L  L + ++ LA            L  LD+S N
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 230 NFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 289
                +       L  L+  +     L    P  F  +  LQ L L +N L     +   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF- 149

Query: 290 VGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN 349
               NL  L L  N +          L +L  L L  NR     P +      L  L+L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF 409
            N+LS      L  L  LQY+ + +N               LQ    S + +  SLP   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRL 268

Query: 410 HPLSIKQVHLSKNMLHG 426
               +K+  L+ N L G
Sbjct: 269 AGRDLKR--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 46/288 (15%), Positives = 92/288 (31%), Gaps = 36/288 (12%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
            + + + L  +  S +      +  +L  L++ +N L          +  L  LD+S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHS 139
              S+  +    L  +  L L     Q  +    F   + L++ Y ++N + A       
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALP---DD 147

Query: 140 LIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQ 199
                  L+ L L       V    F    H L+ + L   ++    P    +    +  
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 200 LSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGS 259
               N+  A P    +   + L+ L ++ N +                            
Sbjct: 207 YLFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCRAR--------------------- 244

Query: 260 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEG 307
                    +LQ    S++ +   +P+ LA      +   L+ N+L+G
Sbjct: 245 -----PLWAWLQKFRGSSSEVPCSLPQRLA----GRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.6 bits (174), Expect = 2e-14
 Identities = 52/280 (18%), Positives = 90/280 (32%), Gaps = 33/280 (11%)

Query: 199 QLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG 258
            L VV  S  G  ++P        LLD+  N        +  + L +L+      N +  
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISK 69

Query: 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN----- 313
             P +F  +  L+ L LS N L  E+PE +      L         +   +F+       
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 314 ------------------FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG 355
                               +  L  +++        IPQ L    SL  LHL+ N ++ 
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITK 185

Query: 356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIK 415
                L  L  L  + +  N +  +          L+ L +++N +            I+
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245

Query: 416 QVHLSKNMLHG-----QLKRGTFFNCSSLVTLDLSYNRLN 450
            V+L  N +           G     +S   + L  N + 
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 1e-12
 Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 5/216 (2%)

Query: 241 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL 300
           D+ P   + +   N +       F N+K L  L L NN ++   P   A   V LE L L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 86

Query: 301 SNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW 360
           S N L+         L  L++ + E  +    +   L++   +E L  N    SG     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLS 420
              +  L YI + + ++  +         SL  L +  N I+    A    L+       
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
                  +  G+  N   L  L L+ N+L       
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 5e-10
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 8/187 (4%)

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329
           L+++  S+  L  ++P+ L     +   L L NN +         NL NL  L L  N+ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD 389
               P + +    LE L+L+ N L     +    L  L+        +   +     Q+ 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 390 SLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
            +++      +      A      +  + ++       +         SL  L L  N++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKI 183

Query: 450 NGSIPDW 456
                  
Sbjct: 184 TKVDAAS 190

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 47/288 (16%), Positives = 91/288 (31%), Gaps = 37/288 (12%)

Query: 20  PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 79
           P    L L ++  + I D    +L +L  L + NN +    P   A +  L  L +S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 80  LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHS 139
           L       P     +++EL +  N     +    F   +++       N +         
Sbjct: 91  LK----ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK-------- 137

Query: 140 LIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQ 199
                                           L Y+ ++   +    P  L  +   L +
Sbjct: 138 ------------------SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTE 175

Query: 200 LSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGS 259
           L +  + +       +     L  L +S N+             P L   + + N L   
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-K 233

Query: 260 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEG 307
           +P    + K++Q++ L NN+++            N +  + S  +L  
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 46/266 (17%), Positives = 85/266 (31%), Gaps = 35/266 (13%)

Query: 18  SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
           ++ +L  L L ++  S+I       LV L+ LY+  N L+         +  LR+     
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---HE 109

Query: 78  NQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQS 137
           N++T    S        I   + +N      I    F    +L +    +  I       
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT----- 164

Query: 138 HSLIPPKF--QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNT 195
              IP      L+ L L             L   ++L  + LS   ++       L N  
Sbjct: 165 ---IPQGLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTP 219

Query: 196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA 255
            L +L + N+ L       +  HK ++++ +  NN                     ++ +
Sbjct: 220 HLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNIS-------------------AIGS 259

Query: 256 LDGSIPSSFGNMKFLQILDLSNNHLT 281
            D   P           + L +N + 
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 38/266 (14%), Positives = 71/266 (26%), Gaps = 12/266 (4%)

Query: 42  SLVHLQELYIDNNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
               +  L +   +L     +P  LAN+  L  L +             +  LT +  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG 159
           +++ +    I        + +   ++ N           SL          +  SG    
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 160 VTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHK 219
                                         +      L    V            +    
Sbjct: 168 SYGSFSKLFTS--------MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
                 I          +    +  +L   +   N + G++P     +KFL  L++S N+
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 280 LTGEIPEHLAVGCVNLESLALSNNNL 305
           L GEIP+         +  A +NN  
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 4e-10
 Identities = 47/252 (18%), Positives = 84/252 (33%), Gaps = 3/252 (1%)

Query: 172 LEYVDLSHIKMNGEFPTWL-LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNN 230
           +  +DLS + +   +P    L N   L  L +   +       P  +          T+ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 231 FRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV 290
                  +    + +L   + S NAL G++P S  ++  L  +    N ++G IP+    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 291 GCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN 350
                 S+ +S N L G +     NL             +      L             
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAF--VDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH 410
            +        +G    L  + + NN + G +P    QL  L  L++S NN+ G +P   +
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 411 PLSIKQVHLSKN 422
                    + N
Sbjct: 290 LQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 6/243 (2%)

Query: 217 SHKQLRLLDISTNNFRG--HIPVEIGDVLPSLYVFNNSMNA-LDGSIPSSFGNMKFLQIL 273
              ++  LD+S  N      IP  + + LP L          L G IP +   +  L  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 274 DLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEI 333
            +++ +               L +L  S N L G +     +L NL  +  +GNR  G I
Sbjct: 107 YITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 334 PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393
           P S    S L      + +              L ++ +  N LEG   V F    + Q 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 394 LDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 453
           + ++ N+++  L       ++  + L  N ++G L          L +L++S+N L G I
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEI 284

Query: 454 PDW 456
           P  
Sbjct: 285 PQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 19  MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN 78
             +L  L L ++     L +GL  L  L  L +  N+L G +P    N+    +   ++N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

Query: 79  Q-LTGS 83
           + L GS
Sbjct: 302 KCLCGS 307

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 56/333 (16%), Positives = 101/333 (30%), Gaps = 21/333 (6%)

Query: 21  SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQL 80
               L L++   S + +       HL+ L    N L   LP    ++ SL + + +   L
Sbjct: 39  QAHELELNNLGLSSLPE----LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 81  TGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSL 140
           +        + +++ +   L        + +    N+S  K      +        +   
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 141 IP---PKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKL 197
                          +            L  +  +   ++       +   +L       
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALD 257
             L  + D       L +  +    L ++  +     +   I   L  L      +NA  
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 258 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLA 317
             I S       L+ L++SNN L  E+P         LE L  S N+L            
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPP----RLERLIASFNHLA----EVPELPQ 324

Query: 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN 350
           NLK L +E N    E P       S+E L +N+
Sbjct: 325 NLKQLHVEYNPLR-EFPDIP---ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 9e-05
 Identities = 50/339 (14%), Positives = 98/339 (28%), Gaps = 30/339 (8%)

Query: 63  CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF-QIPISLEPFFNHSRLK 121
           CL        L++++  L+ S+   P      +E L+ S N   ++P           LK
Sbjct: 35  CLDR--QAHELELNNLGLS-SLPELP----PHLESLVASCNSLTELPELP------QSLK 81

Query: 122 FFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIK 181
               +NN + A       L       ++L      ++           + L+ +      
Sbjct: 82  SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141

Query: 182 MNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD 241
           +               +Q      ++                L+           +    
Sbjct: 142 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ 201

Query: 242 VLPSLYVFNNSMNALDGSIPSSFG-------NMKFLQILDLSNNHLTGEIPEHLAVGCVN 294
            LP L       N L                +     + +L  +    ++ E++  G   
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 295 LESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS 354
           L       N     + S      +L+ L +  N+ + E+P        LE L  + N L+
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA 317

Query: 355 GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393
             +P    NL  L    +  N L    P     ++ L++
Sbjct: 318 -EVPELPQNLKQLH---VEYNPLREF-PDIPESVEDLRM 351

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 3/163 (1%)

Query: 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLAN 318
            IP           L L++N L     + L     +L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE 378
           ++ LQL  N+      +       L+ L+L +N +S  +P    +L  L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 379 GLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSK 421
               + +   + L+   ++        P+    + IK +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 4e-07
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFV 330
           Q LDL+  +L  ++   L      + +     + ++  +   +F+   ++ + L  +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 59

Query: 331 GE-IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH 376
              +   LS+CS L+ L L    LS  I   L   + L  + +    
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 37/241 (15%), Positives = 74/241 (30%), Gaps = 13/241 (5%)

Query: 224 LDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 283
           LD++  N    +   +  +   +  F    + +D  +   F   + +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 284 IPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL 343
               +   C  L++L+L    L   + +     +NL  L L G     E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 344 EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI---------- 393
               LN +       + +          +   +L G          S  +          
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 394 LDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 453
           L  S    +      F    ++ + LS+                +L TL +     +G++
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 454 P 454
            
Sbjct: 242 Q 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 7e-06
 Identities = 33/256 (12%), Positives = 76/256 (29%), Gaps = 12/256 (4%)

Query: 175 VDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGH 234
           +DL+   ++ +    LL       +                 S  +++ +D+S +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 235 IPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH-LTGEIPEHLAVGCV 293
               I      L   +     L   I ++      L  L+LS     +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 294 NLESLALSNNNLEGHMFSRNFNLANLKLLQ-------LEGNRFVGEIPQSLSKCSSLEGL 346
            L+ L LS          +       + +         +  +            + +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 347 HLNNNSLSGRIPRWLGNLTWLQYIIMPN-NHLEGLIPVEFCQLDSLQILDISDNNISGSL 405
             ++  L     +    L +LQ++ +     +     +E  ++ +L+ L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 406 PACFHPLSIKQVHLSK 421
                 L   Q++ S 
Sbjct: 242 QLLKEALPHLQINCSH 257

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 8/138 (5%)

Query: 262 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL 321
           + + N    + LDL    +   + E+L       +++  S+N +          L  LK 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG----RIPRWLGNLTWLQYIIMPNNHL 377
           L +  NR              L  L L NNSL           L +LT+L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 378 EGLIPVEFCQLDSLQILD 395
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 9/193 (4%)

Query: 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLAN 318
           ++P      K   IL LS N L       L      L  L L            +  L  
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAE--LTKLQVDGTLPV 78

Query: 319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE 378
           L  L L  N+         +  +      ++ N L+      L  L  LQ + +  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 379 GLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCS 437
            L P        L+ L +++NN++       + L ++  + L +N L+   K   FF   
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--GFFGSH 195

Query: 438 SLVTLDLSYNRLN 450
            L    L  N   
Sbjct: 196 LLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 40/199 (20%), Positives = 61/199 (30%), Gaps = 25/199 (12%)

Query: 221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 280
              ++    N    +P ++        + + S N L     ++      L  L+L    L
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 281 TGEIPEHL--------------------AVGCVNLESLALSNNNLEGHMFSRNFNLANLK 320
           T    +                            L  L +S N L          L  L+
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 321 LLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL 380
            L L+GN      P  L+    LE L L NN+L+      L  L  L  +++  N L   
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT- 186

Query: 381 IPVEFCQLDSLQILDISDN 399
           IP  F     L    +  N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 30/216 (13%), Positives = 54/216 (25%), Gaps = 17/216 (7%)

Query: 91  HLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSR 149
            + S  E+     +   +P  L            +   N +      +        +L++
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPK-----DTTILHLSENLLYTFSLATLMPYT---RLTQ 59

Query: 150 LSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAG 209
           L+L       +     L     L+        +     T        +    + +  L  
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 210 PFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKF 269
              L                N    +P  +    P L   + + N L          ++ 
Sbjct: 120 LRGLGELQELY------LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305
           L  L L  N L   IP+    G   L    L  N  
Sbjct: 174 LDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGNPW 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 27/238 (11%)

Query: 65  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY 124
             + +   +    + +T +++ +    L  I  L           ++E     + L    
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 125 AENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNG 184
            ++NQI       +           L+  +  E      K +     L+ +    +    
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 185 EFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLP 244
                 L   + L  L +  + +     L   ++ Q   +  +  +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----S 173

Query: 245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN 302
            L       N +    P    ++  L  + L NN ++   P        NL  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 40  LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
           L +L  L  L  D+N +    P  LA++ +L  + + +NQ++      PL + +++  + 
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVT 223

Query: 100 LSN 102
           L+N
Sbjct: 224 LTN 226

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 56/454 (12%), Positives = 111/454 (24%), Gaps = 29/454 (6%)

Query: 21  SLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRG----SLPWCLANMTSLRILDV 75
            ++ L +     S       L  L   Q + +D+  L       +   L    +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 76  SSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN 131
            SN+L       +          I++L L N                 L      +   N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 132 AEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 191
                   L+       +  L     +  +                   K        + 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 192 ENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNN 251
           E   +++             +      + L+L      +        I     SL     
Sbjct: 183 EAGVRVLC---------QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 233

Query: 252 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFS 311
             N L     +            L    +          G +     A  +        +
Sbjct: 234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 293

Query: 312 RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII 371
              +     L +             +  CS       + +S+  +    L     +    
Sbjct: 294 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL--QISNNR 351

Query: 372 MPNNHLEGLIPVEFCQLDSLQILDISDNNISG----SLPACFHPL-SIKQVHLSKNMLHG 426
           + +  +  L          L++L ++D ++S     SL A      S++++ LS N L  
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 427 Q----LKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
                L          L  L L     +  + D 
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 261 PSSFGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLESLALSNNNLEGHMFSR----- 312
                    L++L L++  ++      LA   +   +L  L LSNN L      +     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 313 NFNLANLKLLQLEGNRFVGEIPQSLSK 339
                 L+ L L    +  E+   L  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 55/444 (12%), Positives = 108/444 (24%), Gaps = 30/444 (6%)

Query: 7   LNTSFLQIIGESMPSLKYLSLSDSN----SSRILDRGLCSLVHLQELYIDNNDLRGSLPW 62
           L+ +    +   +   + + L D        + +   L     L EL + +N+L      
Sbjct: 14  LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 73

Query: 63  CLA-----NMTSLRILDVSSNQLTGSISSS----------PLVHLTSIEELMLSNNHFQI 107
           C+          ++ L + +  LTG+                    S   L  +      
Sbjct: 74  CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 133

Query: 108 PISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLY 167
              L+P     +L+  Y   +  + E   S     P F+   +S +   E GV       
Sbjct: 134 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 193

Query: 168 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLS--VVNDSLAGPFRLPIHSHKQLRLLD 225
                +   L                     + S   +         + +       L  
Sbjct: 194 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 253

Query: 226 ISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP 285
            S           I                    +  +   +       L    L     
Sbjct: 254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 313

Query: 286 EHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEG 345
                      + A  ++       +R      +   +LE               S L  
Sbjct: 314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 373

Query: 346 LHLNNNSLSGR----IPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQ-----LDSLQILDI 396
           L L +  +S      +   L     L+ + + NN L     ++  +        L+ L +
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 397 SDNNISGSLPACFHPLSIKQVHLS 420
            D   S  +      L   +  L 
Sbjct: 434 YDIYWSEEMEDRLQALEKDKPSLR 457

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 9e-06
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 346 LHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL 405
           LHL +  L+  +   L  L  + ++ + +N L  L P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 406 PACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451
               +   ++++ L  N L          +C  LV L+L  N L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFV 330
           ++L L++  LT  +  HL    + +  L LS+N L     +     A   L  L+ +   
Sbjct: 1   RVLHLAHKDLT--VLCHLE-QLLLVTHLDLSHNRLRALPPALA---ALRCLEVLQASDNA 54

Query: 331 GEIPQSLSKCSSLEGLHLNNNSL-SGRIPRWLGNLTWLQYIIMPNNHLEGL 380
            E    ++    L+ L L NN L      + L +   L  + +  N L   
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLAN 318
           ++      +  +  LDLS+N L    P   A+ C+ +       ++          NL  
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALENVDGVANLPR 66

Query: 319 LKLLQLEGNRFVG-EIPQSLSKCSSLEGLHLNNNSLSG 355
           L+ L L  NR       Q L  C  L  L+L  NSL  
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 23  KYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG 82
           + L L+  + + +    L  L+ +  L + +N LR         + +LR L+V       
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNA 54

Query: 83  SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLI 141
             +   + +L  ++EL+L NN  Q   +++P  +  RL     + N +  E      L 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 17  ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
           E +  + +L LS  N  R L   L +L  L+ L   +N L         N+  L+ L + 
Sbjct: 17  EQLLLVTHLDLS-HNRLRALPPALAALRCLEVLQASDNALENVDGVA--NLPRLQELLLC 73

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNNHF 105
           +N+L  S +  PLV    +  L L  N  
Sbjct: 74  NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 34/234 (14%), Positives = 66/234 (28%), Gaps = 7/234 (2%)

Query: 45  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 104
             +      + +   +P  L    +   L     +L   I          +E++ +S N 
Sbjct: 9   SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQND 64

Query: 105 FQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPK 164
               I  + F N  +L     E       I        P  Q   +S +           
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 165 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLL 224
               +  L+  D  +I          L   + ++ L+               +  QL  L
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ---EIHNCAFNGTQLDEL 181

Query: 225 DISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278
           ++S NN    +P ++        + + S   +         N+K L+     N 
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 32/235 (13%), Positives = 60/235 (25%), Gaps = 8/235 (3%)

Query: 69  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENN 128
           S R+     +++T      P     +  EL       ++ I    F     L+      N
Sbjct: 9   SNRVFLCQESKVT----EIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQN 63

Query: 129 QINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPT 188
            +   I        PK    R+  ++                    +  + IK   +   
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 189 WLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYV 248
                   L     +N            S + + L      N    I     +      +
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL--WLNKNGIQEIHNCAFNGTQLDEL 181

Query: 249 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNN 303
             +  N L+      F       ILD+S   +   +P +       L + +  N 
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 235

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 16/147 (10%), Positives = 42/147 (28%), Gaps = 1/147 (0%)

Query: 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329
              L  + +    +   HL       E    +  +L+         L  L+ L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD 389
               P +      L  L+L+ N+L     + +  L+  + ++  N            + +
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 390 SLQILDISDNNISGSLPACFHPLSIKQ 416
              +  + +  +          +    
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 19/128 (14%), Positives = 31/128 (24%)

Query: 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLAN 318
                    + L  L + N      +      G   L +L +  + L             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE 378
           L  L L  N       +++   S  E +   N        RWL          +P   L+
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 379 GLIPVEFC 386
                   
Sbjct: 142 CHGQGPLA 149

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 1/124 (0%)

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPR-WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDS 390
           +    L    +L  L++ N      +    L  L  L+ + +  + L  + P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 391 LQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
           L  L++S N +          LS++++ LS N LH                  +   +L 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 451 GSIP 454
               
Sbjct: 142 CHGQ 145

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 37/308 (12%), Positives = 83/308 (26%), Gaps = 23/308 (7%)

Query: 21  SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG----SLPWCLANMTSLRILDVS 76
           SLK  +++  +   +    L     ++E+ +  N +       L   +A+   L I + S
Sbjct: 9   SLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 77  SNQLTGSISSSPLVHLTSIEELMLSNN-------HFQIPISLEPFFNHSRLKFFYAENNQ 129
                      P      ++ L+                 + +        K    E+  
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 130 INAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW 189
           ++       +       L  L+++   ++       +  ++ LE   +       +    
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 190 LLENNTKLIQLSVVNDSLAGPFRLPIHSH-KQLRLLDISTNNFRGHIPVEIGDVLPSLYV 248
           L         +            L      K L L D +  +             P+L  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 249 FNNSMNALDGSIPSSFGNM------KFLQILDLSNNHLTGE----IPEHLAVGCVNLESL 298
              +   L     ++  +         LQ L L  N +  +    +   +     +L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 299 ALSNNNLE 306
            L+ N   
Sbjct: 308 ELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 38/321 (11%), Positives = 84/321 (26%), Gaps = 24/321 (7%)

Query: 45  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSIS---SSPLVHLTSIEELMLS 101
            L+   I   D + S+   L    S++ + +S N +    +   S  +     +E    S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 102 NNHFQIPISLEP---------FFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSL 152
           +          P              +L      +N       +       K        
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 153 SSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFR 212
                 G      +        V+                N  +   +     +      
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 213 LPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272
           L      Q  +      +          ++       N   +    ++  +  +   L+ 
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 273 LDLSNNHLTGEIPEHLA-----VGCVNLESLALSNNNLEGHMFSR-----NFNLANLKLL 322
           L L++  L+      +      +  + L++L L  N +E           +  + +L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 323 QLEGNRFVGEIPQSLSKCSSL 343
           +L GNRF  E    + +   +
Sbjct: 308 ELNGNRF-SEEDDVVDEIREV 327

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 2/135 (1%)

Query: 278 NHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSL 337
           N L  E  E L +        +    +L+G     +    N+ ++    +     +    
Sbjct: 2   NELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIE 61

Query: 338 SKCSSLEGLHLNNNSLSGR--IPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
                L  L+L+NN L     +   +     L+ + +  N L+    ++  +   L+ L 
Sbjct: 62  ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 396 ISDNNISGSLPACFH 410
           +  N++S +      
Sbjct: 122 LDGNSLSDTFRDQST 136

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 35/209 (16%), Positives = 64/209 (30%), Gaps = 33/209 (15%)

Query: 235 IPVEIGDVLP-----SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 289
           +P  I  +            N    ++  ++  +   +  +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 290 VGCVNLESLALSNNNLEGHMFSRNFNLANLKLL------------------QLEGNRFVG 331
               N+  L L+ N L       N        L                   L       
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 332 EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
                L     LE L+L NN ++         LT L  + + +N +  ++P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 392 QILDISDNNISGSLPACFHPLSIKQVHLS 420
           Q L +S N+IS  L A     ++  + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.38

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.6e-25  Score=207.70  Aligned_cols=341  Identities=23%  Similarity=0.260  Sum_probs=196.1

Q ss_pred             CCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEE
Q 048657           19 MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL   98 (456)
Q Consensus        19 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L   98 (456)
                      +.+|++|+++++.++++  +++..+++|++|++++|++++. + .+.++++|++|++++|+++ .++.  +.++++|+.|
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~-~i~~--l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DITP--LANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc-cccc--cccccccccc
Confidence            45677777777776665  2566677777777777777633 2 2667777777777777766 4442  6667777777


Q ss_pred             EcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEec
Q 048657           99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLS  178 (456)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~  178 (456)
                      +++++.+...   ........+.......+.+........                            ............
T Consensus       116 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~~~~~~~~~~~~  164 (384)
T d2omza2         116 TLFNNQITDI---DPLKNLTNLNRLELSSNTISDISALSG----------------------------LTSLQQLSFGNQ  164 (384)
T ss_dssp             ECCSSCCCCC---GGGTTCTTCSEEEEEEEEECCCGGGTT----------------------------CTTCSEEEEEES
T ss_pred             cccccccccc---ccccccccccccccccccccccccccc----------------------------cccccccccccc
Confidence            7776655421   112223333333333332211110000                            000000111111


Q ss_pred             CcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCC
Q 048657          179 HIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG  258 (456)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  258 (456)
                      .....     . ..............+..  ........+++++.++++++.+.+..+.   ...++|+.+++.++.+..
T Consensus       165 ~~~~~-----~-~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~l~~  233 (384)
T d2omza2         165 VTDLK-----P-LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD  233 (384)
T ss_dssp             CCCCG-----G-GTTCTTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCC
T ss_pred             cchhh-----h-hcccccccccccccccc--ccccccccccccceeeccCCccCCCCcc---cccCCCCEEECCCCCCCC
Confidence            10000     0 11111112222222111  1122345556677777777766532221   225677777777776653


Q ss_pred             CccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccccc
Q 048657          259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS  338 (456)
Q Consensus       259 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  338 (456)
                        ...+..+++|+.++++++.+. .++.  +..+++|++++++++++.+..  .+..++.++.+.+.++.+.+  ...+.
T Consensus       234 --~~~l~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~  304 (384)
T d2omza2         234 --IGTLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPIS  304 (384)
T ss_dssp             --CGGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGG
T ss_pred             --cchhhcccccchhccccCccC-CCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccc
Confidence              235667777888888877776 3332  235677888888877776533  24567777888888877753  23466


Q ss_pred             CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEE
Q 048657          339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVH  418 (456)
Q Consensus       339 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~  418 (456)
                      .+++++.|++++|.+++..  .+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..+ ...+++|++|+
T Consensus       305 ~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~  379 (384)
T d2omza2         305 NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLG  379 (384)
T ss_dssp             GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEE
T ss_pred             hhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC--hhHcCCCCCCEEECCCCcCCCChh-hccCCCCCEee
Confidence            7788888888888776432  377788888888888887643  357778888888888888876543 44467888888


Q ss_pred             ccCc
Q 048657          419 LSKN  422 (456)
Q Consensus       419 l~~~  422 (456)
                      +++|
T Consensus       380 L~~N  383 (384)
T d2omza2         380 LNDQ  383 (384)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            8876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2e-25  Score=206.99  Aligned_cols=356  Identities=23%  Similarity=0.267  Sum_probs=251.5

Q ss_pred             eccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCcee
Q 048657           26 SLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF  105 (456)
Q Consensus        26 ~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~  105 (456)
                      .+....+++..  ....+.+|++|+++++++++ + +.+..+++|++|++++|+++ .++.  +.++++|++|++++|.+
T Consensus        28 ~l~~~~~~~~~--~~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          28 VLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQI  100 (384)
T ss_dssp             HTTCSSTTSEE--CHHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCC
T ss_pred             HhCCCCCCCcc--CHHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccc
Confidence            45555555443  23567789999999999984 3 46888999999999999998 6664  88999999999999988


Q ss_pred             eeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccc
Q 048657          106 QIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGE  185 (456)
Q Consensus       106 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  185 (456)
                      ..   ...+..+++|+.+++.++.+.+...                              ......+.......+.+...
T Consensus       101 ~~---i~~l~~l~~L~~L~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~l~~~  147 (384)
T d2omza2         101 AD---ITPLANLTNLTGLTLFNNQITDIDP------------------------------LKNLTNLNRLELSSNTISDI  147 (384)
T ss_dssp             CC---CGGGTTCTTCCEEECCSSCCCCCGG------------------------------GTTCTTCSEEEEEEEEECCC
T ss_pred             cc---ccccccccccccccccccccccccc------------------------------cccccccccccccccccccc
Confidence            62   2347788899999988776643211                              11222334444444333211


Q ss_pred             cchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCcccccc
Q 048657          186 FPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFG  265 (456)
Q Consensus       186 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~  265 (456)
                      .... ...............     ....+.............+...  .. .....++++..++++.+.+.+..+  ..
T Consensus       148 ~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~~~~~l~l~~n~i~~~~~--~~  216 (384)
T d2omza2         148 SALS-GLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKVS--DI-SVLAKLTNLESLIATNNQISDITP--LG  216 (384)
T ss_dssp             GGGT-TCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCGG--GG
T ss_pred             cccc-ccccccccccccccc-----hhhhhccccccccccccccccc--cc-cccccccccceeeccCCccCCCCc--cc
Confidence            1111 111111111111111     1112233344444444444432  12 223347899999999998876543  56


Q ss_pred             CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcE
Q 048657          266 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEG  345 (456)
Q Consensus       266 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  345 (456)
                      .+++|++|+++++.+. .++.  ...+++|+.+++++|.+.+..  .+..+++|+.|+++++.+.+..  .+..++.++.
T Consensus       217 ~~~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~  289 (384)
T d2omza2         217 ILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTN  289 (384)
T ss_dssp             GCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             ccCCCCEEECCCCCCC-Ccch--hhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccc
Confidence            7889999999999887 5543  346899999999999988644  3667899999999999987432  4778999999


Q ss_pred             EEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657          346 LHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       346 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~  425 (456)
                      +++.+|.+.+  ...+..+++++.|++++|.+.+..  .+..+++|++|++++|++++.. ....+++|++|++++|+++
T Consensus       290 l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         290 LELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             EECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCC
Confidence            9999998874  345888999999999999998653  4788999999999999998643 4445889999999999997


Q ss_pred             CCCCcccccCCCcceEEEccCc
Q 048657          426 GQLKRGTFFNCSSLVTLDLSYN  447 (456)
Q Consensus       426 ~~~~~~~~~~~~~L~~L~l~~~  447 (456)
                      + ++.  +.++++|+.|+|++|
T Consensus       365 ~-l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         365 D-LTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             B-CGG--GTTCTTCSEEECCCE
T ss_pred             C-Chh--hccCCCCCEeeCCCC
Confidence            4 433  788999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=6.9e-25  Score=197.07  Aligned_cols=254  Identities=25%  Similarity=0.349  Sum_probs=192.3

Q ss_pred             cceeeeecccCcCC--CCCcCccCCccccEEeCCC-CccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657          196 KLIQLSVVNDSLAG--PFRLPIHSHKQLRLLDIST-NNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI  272 (456)
Q Consensus       196 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  272 (456)
                      ++++|++.++.+.+  .++..++.++.|++|++++ |.+.+.+|..+.. +++|++|++++|.+.+..+..+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhcc
Confidence            57888888877765  3567788888888888876 6777777877765 788888888888887777777788888888


Q ss_pred             EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccc-cEEEccCccccccccccccCCCCCcEEEcCCC
Q 048657          273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANL-KLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN  351 (456)
Q Consensus       273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  351 (456)
                      +++++|.+.+.+|..+ ..+++++++++++|.+.+..+..+..+..+ +.+.+++|++++..+..+..+.. ..+++..+
T Consensus       130 l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~  207 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSS
T ss_pred             cccccccccccCchhh-ccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            8888887765666554 367888888888888776666666666655 77888888887777766666544 46888888


Q ss_pred             cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCc
Q 048657          352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKR  430 (456)
Q Consensus       352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~  430 (456)
                      ...+..+..+..+++++.+++.++.+.+.+ ..+..+++|+.|++++|++++..|..+. +++|++|++++|+++|.+|.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            777777778888888888888888887554 4577778888888888888876666544 67888888888888777774


Q ss_pred             ccccCCCcceEEEccCcc-cCCC-CCC
Q 048657          431 GTFFNCSSLVTLDLSYNR-LNGS-IPD  455 (456)
Q Consensus       431 ~~~~~~~~L~~L~l~~~~-l~~~-~p~  455 (456)
                        +.++.+|+.+++++|+ ++|. +|+
T Consensus       287 --~~~L~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         287 --GGNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             --STTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             --cccCCCCCHHHhCCCccccCCCCCC
Confidence              4677888888888886 6654 553

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=1e-23  Score=189.40  Aligned_cols=250  Identities=26%  Similarity=0.356  Sum_probs=189.5

Q ss_pred             CccEEEecCccccc--ccchhhhhccccceeeeecc-cCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcce
Q 048657          171 DLEYVDLSHIKMNG--EFPTWLLENNTKLIQLSVVN-DSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLY  247 (456)
Q Consensus       171 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  247 (456)
                      ++..|+++++.+.+  .+|.. +..+++|++|++++ +.+.+.++..++++++|++|++++|.+.+..+..+ ..+..|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~-~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhccccccccccccc-cchhhhc
Confidence            46667777766554  23343 35677777777765 45666667777788888888888887774444433 3477888


Q ss_pred             EEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCc
Q 048657          248 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGN  327 (456)
Q Consensus       248 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  327 (456)
                      .++++.|.....+|..+..++.++.++++++.+.+.+|..+......++.+.+++|++.+..+..+.... ...+++.++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            8888888877778888888888999999888887677766653333358888888888776666665554 446888888


Q ss_pred             cccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCc
Q 048657          328 RFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA  407 (456)
Q Consensus       328 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  407 (456)
                      ...+..+..+..+++++.+++++|.+.... ..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            888788888888899999999998887544 4577888999999999999888888899999999999999999887776


Q ss_pred             ccccccccEEEccCccc
Q 048657          408 CFHPLSIKQVHLSKNML  424 (456)
Q Consensus       408 ~~~~~~L~~l~l~~~~~  424 (456)
                      ...+++|+.+++++|+.
T Consensus       287 ~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             STTGGGSCGGGTCSSSE
T ss_pred             cccCCCCCHHHhCCCcc
Confidence            65677888888988874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=2e-21  Score=173.55  Aligned_cols=258  Identities=22%  Similarity=0.247  Sum_probs=162.9

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  249 (456)
                      ++++.|++++|.+. .++...+.++++|+.|+++++.+....+..+..+++|+.|++++|++. .+|...   ...+..+
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhh
Confidence            46788888888776 444434567778888888887777766667777788888888887776 455433   3466777


Q ss_pred             EccCCccCCCccccccCCCCCcEEeccCCcCCC-cccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcc
Q 048657          250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG-EIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNR  328 (456)
Q Consensus       250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  328 (456)
                      ....+.+....+..+........+....+.... ......+..+++|+.+++.+|.+......   .+++|+.|++.+|.
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~  182 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNK  182 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc---cCCccCEEECCCCc
Confidence            777766665444455566666667666553321 11122334566677777777766543222   24667777777777


Q ss_pred             ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcc
Q 048657          329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPAC  408 (456)
Q Consensus       329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  408 (456)
                      .....+..+..++.++.|++++|.+.+..+..+.++++|++|++++|.++. +|.++..+++|+.|++++|+++......
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-cccccccccCCCEEECCCCccCccChhh
Confidence            665666667777777777777777766666667777777777777777763 3556667777777777777776554333


Q ss_pred             cc-------cccccEEEccCcccC-CCCCcccccCC
Q 048657          409 FH-------PLSIKQVHLSKNMLH-GQLKRGTFFNC  436 (456)
Q Consensus       409 ~~-------~~~L~~l~l~~~~~~-~~~~~~~~~~~  436 (456)
                      +.       ..+|+.+++++|.+. ..+++..|.-+
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             ccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            32       345666666666652 23444444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=4.6e-21  Score=171.22  Aligned_cols=266  Identities=20%  Similarity=0.203  Sum_probs=212.4

Q ss_pred             ccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEc
Q 048657          172 LEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNN  251 (456)
Q Consensus       172 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  251 (456)
                      .+.++-++..++ .+|..+   .+.+++|++++|.+....+..+..+++|++|+++++.+. .++...+..++.|+.+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecc
Confidence            455666665555 445433   357999999999998877778999999999999999988 444444445899999999


Q ss_pred             cCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccc--ccccccccccccccEEEccCccc
Q 048657          252 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLE--GHMFSRNFNLANLKLLQLEGNRF  329 (456)
Q Consensus       252 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~  329 (456)
                      ++|.+.. +|..  ..+.++.|.+.++.+. .++...+........+....+...  ......+..+++|+.+++.+|.+
T Consensus        87 ~~n~l~~-l~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          87 SKNQLKE-LPEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CSSCCSB-CCSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCCccCc-Cccc--hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            9998873 4433  3567899999999887 666666667778888888877543  23344566788999999999998


Q ss_pred             cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc
Q 048657          330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF  409 (456)
Q Consensus       330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  409 (456)
                      . .++..  .+++|++|++++|..+...+..+.+++.++.|++++|.+.+..+..+..+++|++|++++|+++..+....
T Consensus       163 ~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~  239 (305)
T d1xkua_         163 T-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA  239 (305)
T ss_dssp             C-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTT
T ss_pred             c-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            7 44443  36899999999999988888899999999999999999998888899999999999999999997755555


Q ss_pred             ccccccEEEccCcccCCCCCcccc------cCCCcceEEEccCcccC
Q 048657          410 HPLSIKQVHLSKNMLHGQLKRGTF------FNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       410 ~~~~L~~l~l~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~l~  450 (456)
                      ..++|+.|++++|++. .++...|      ...++|+.|++++|++.
T Consensus       240 ~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         240 DHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            5889999999999985 6665544      45688999999999985

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.1e-22  Score=174.88  Aligned_cols=234  Identities=21%  Similarity=0.190  Sum_probs=173.8

Q ss_pred             cceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccC-CccCCCccccccCCCCCcEEe
Q 048657          196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSM-NALDGSIPSSFGNMKFLQILD  274 (456)
Q Consensus       196 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~L~  274 (456)
                      .+++|++++|.++...+..+..+++|+.++++++.+. .++.........+..+.... +.+....+..+..+++|+.|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            4556666666665555556777778888888877776 44444444466777766653 344444566788889999999


Q ss_pred             ccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCc
Q 048657          275 LSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS  354 (456)
Q Consensus       275 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  354 (456)
                      ++++.+. .++...+..+.+|+.+++++|.++......+..+++|+.|++++|.+....+..|..+++|+++++++|+++
T Consensus       112 l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            9998876 555555556888999999999988777777888889999999999998777788889999999999999998


Q ss_pred             cccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657          355 GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG  431 (456)
Q Consensus       355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  431 (456)
                      +..|..|.++++|++|++++|.+.+..+..|..+++|+.|++++|++...-...+....++.+....+.+....|..
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchH
Confidence            88889999999999999999999988888899999999999999988753222222233455455445544334443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.2e-21  Score=170.26  Aligned_cols=204  Identities=23%  Similarity=0.189  Sum_probs=111.3

Q ss_pred             cceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEcc-CCcccccccccccccccccEEE
Q 048657          245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS-NNNLEGHMFSRNFNLANLKLLQ  323 (456)
Q Consensus       245 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~  323 (456)
                      .+++|++++|.++...+.++..+++|++|+++++.+. .++...+.....++++... .+.+.......+.++++|++|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            4555555555554333344555555566666555554 4444333344555555443 2334444444455556666666


Q ss_pred             ccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657          324 LEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       324 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      +++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|.+....+.+|..+++|+.+++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            66665544444445555566666666666654444555556666666666666655555555666666666666666655


Q ss_pred             CCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657          404 SLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       404 ~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  450 (456)
                      ..+..+. .+++++|++++|.+. .++...|..+++|+.|++++|++.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCCCC
Confidence            5444443 455666666666664 344444556666666666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-20  Score=162.55  Aligned_cols=197  Identities=21%  Similarity=0.179  Sum_probs=109.7

Q ss_pred             cccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEE
Q 048657          220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA  299 (456)
Q Consensus       220 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~  299 (456)
                      .+.+++-+++.++ .+|..+.   +++++|++++|.+.+..+..+..+++|++|++++|.++ .++..  ..+++|++|+
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~   83 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLD   83 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEE
T ss_pred             CCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--cccccccccc
Confidence            3444555555555 4554332   35666666666665444455666666666666666655 44332  2455666666


Q ss_pred             ccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccc
Q 048657          300 LSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEG  379 (456)
Q Consensus       300 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  379 (456)
                      +++|++... ...+..+++|+.|+++++.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|++++
T Consensus        84 Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          84 LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            666655432 2334455566666666665554444455555666666666665554444455555666666666666655


Q ss_pred             cCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCccc
Q 048657          380 LIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNML  424 (456)
Q Consensus       380 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~  424 (456)
                      ..+..|..+++|++|++++|+++..+...+..++|+.|+|++|++
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            555555556666666666666654444444455566666665554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.2e-20  Score=159.56  Aligned_cols=198  Identities=24%  Similarity=0.249  Sum_probs=132.2

Q ss_pred             cceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEec
Q 048657          196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL  275 (456)
Q Consensus       196 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  275 (456)
                      .+.+++.++..++. ++..+.  +.++.|++++|.+. .++...+..+++|+.|++++|.++. ++ .+..+++|++|++
T Consensus        11 ~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            34445555555543 233332  46777777777776 4555444457777777777777653 22 3456777777777


Q ss_pred             cCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc
Q 048657          276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG  355 (456)
Q Consensus       276 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  355 (456)
                      ++|.+. ..+.. +..+++|+.++++++.+.......+..+.+++.|.+.+|.+....+..+..++.++.+++++|+++.
T Consensus        85 s~N~l~-~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          85 SHNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CSSCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccc-ccccc-cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            777776 33332 3357777777777777766666666667777777777777765555566677777777777777776


Q ss_pred             ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ..++.|..+++|++|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            66667777777778888777777 44556666777777777777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-21  Score=186.22  Aligned_cols=379  Identities=17%  Similarity=0.106  Sum_probs=184.3

Q ss_pred             CccEEeccCCCCCCcc-cccccCCCCCcEEEcccCcccc----cchhhhhcCCCCcEEeccCCccccc----cCCCCC-c
Q 048657           21 SLKYLSLSDSNSSRIL-DRGLCSLVHLQELYIDNNDLRG----SLPWCLANMTSLRILDVSSNQLTGS----ISSSPL-V   90 (456)
Q Consensus        21 ~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~-~   90 (456)
                      +|++|||+++.+++.. .+.+..++++++|+|++|++++    .+..++..+++|++|++++|.+++.    +.. .+ .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~-~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH-HHhc
Confidence            5777888777766543 2345567778888888887763    2334556677888888888776521    111 12 2


Q ss_pred             CCCCccEEEcCCceeeecc---CCCcccccccceEEeccCcccccccccCcCCC--CCccccceeeccCCCCCCC---Cc
Q 048657           91 HLTSIEELMLSNNHFQIPI---SLEPFFNHSRLKFFYAENNQINAEITQSHSLI--PPKFQLSRLSLSSGYEDGV---TF  162 (456)
Q Consensus        91 ~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~---~~  162 (456)
                      ..++|++|++++|+++...   ....+..+++|+++++++|.+.......+...  ...................   ..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            2356888888887765211   12345567788888888777643211110000  0011111122211111111   12


Q ss_pred             hHHhhcCCCccEEEecCcccccccchhh----hhccccceeeeecccCcCCCC----CcCccCCccccEEeCCCCccCCC
Q 048657          163 PKFLYHQHDLEYVDLSHIKMNGEFPTWL----LENNTKLIQLSVVNDSLAGPF----RLPIHSHKQLRLLDISTNNFRGH  234 (456)
Q Consensus       163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~  234 (456)
                      ...+.....++.++++.+...+......    .........+....+......    ...+..                 
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-----------------  224 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS-----------------  224 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH-----------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccc-----------------
Confidence            2334456777888887765433221111    111122333333333222100    001122                 


Q ss_pred             CchhhhccCCcceEEEccCCccCC-----CccccccCCCCCcEEeccCCcCCCcccch---hhcCCCcccEEEccCCccc
Q 048657          235 IPVEIGDVLPSLYVFNNSMNALDG-----SIPSSFGNMKFLQILDLSNNHLTGEIPEH---LAVGCVNLESLALSNNNLE  306 (456)
Q Consensus       235 ~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~---~~~~~~~L~~L~l~~~~~~  306 (456)
                              .+.++.+.+..+....     ...........++.+++++|.+.......   .....+.++.+++++|.+.
T Consensus       225 --------~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         225 --------KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  296 (460)
T ss_dssp             --------CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             --------cccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    3344444444443221     11122233455666666665543211111   1123455666666666554


Q ss_pred             ccccccc-----cccccccEEEccCccccccc----cccccCCCCCcEEEcCCCcCcccc----Ccccc-CCCCCcEEEc
Q 048657          307 GHMFSRN-----FNLANLKLLQLEGNRFVGEI----PQSLSKCSSLEGLHLNNNSLSGRI----PRWLG-NLTWLQYIIM  372 (456)
Q Consensus       307 ~~~~~~~-----~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l  372 (456)
                      ......+     .....|+.+.++++.+....    ...+..+++|++|++++|.+++..    ++.+. ..+.|++|++
T Consensus       297 ~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~L  376 (460)
T d1z7xw1         297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  376 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEEC
Confidence            3222111     12345666666666654332    122334556777777777665332    22222 3456777777


Q ss_pred             CCCccccc----CchhccCCCCCCeEeCcCCccCCCCCccc------ccccccEEEccCcccC
Q 048657          373 PNNHLEGL----IPVEFCQLDSLQILDISDNNISGSLPACF------HPLSIKQVHLSKNMLH  425 (456)
Q Consensus       373 ~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~------~~~~L~~l~l~~~~~~  425 (456)
                      ++|.++..    ++..+..+++|++|++++|+++......+      ....|+.+++.++.+.
T Consensus       377 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            77766532    22334556677777777776654322221      1235777777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=9.8e-16  Score=139.21  Aligned_cols=313  Identities=25%  Similarity=0.268  Sum_probs=166.8

Q ss_pred             CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657           21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML  100 (456)
Q Consensus        21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l  100 (456)
                      ++++|+|+++.++.+|.    ..++|++|++++|.++ .+|+.   ..+|++|++++|+++ .++.  +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS--C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh--h--ccccccccc
Confidence            67788888888777763    2467788888888777 45543   357777888887776 4443  1  245777887


Q ss_pred             CCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCc
Q 048657          101 SNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI  180 (456)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  180 (456)
                      ++|.+. ..+  ....+++|+.++++++.+....                                .....+..+.+..+
T Consensus       106 ~~n~l~-~lp--~~~~l~~L~~L~l~~~~~~~~~--------------------------------~~~~~l~~l~~~~~  150 (353)
T d1jl5a_         106 SNNQLE-KLP--ELQNSSFLKIIDVDNNSLKKLP--------------------------------DLPPSLEFIAAGNN  150 (353)
T ss_dssp             CSSCCS-SCC--CCTTCTTCCEEECCSSCCSCCC--------------------------------CCCTTCCEEECCSS
T ss_pred             cccccc-ccc--chhhhccceeeccccccccccc--------------------------------cccccccchhhccc
Confidence            777765 222  2345666666666655442100                                00122333333332


Q ss_pred             ccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCc
Q 048657          181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI  260 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  260 (456)
                      ...                           ....+..++.++.+.+..+... ..+..    ......+......+. . 
T Consensus       151 ~~~---------------------------~~~~l~~l~~l~~L~l~~n~~~-~~~~~----~~~~~~l~~~~~~~~-~-  196 (353)
T d1jl5a_         151 QLE---------------------------ELPELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-E-  196 (353)
T ss_dssp             CCS---------------------------SCCCCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-S-
T ss_pred             ccc---------------------------ccccccccccceeccccccccc-ccccc----ccccccccccccccc-c-
Confidence            221                           1112334455555666555443 11111    122333333333322 1 


Q ss_pred             cccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCC
Q 048657          261 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC  340 (456)
Q Consensus       261 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  340 (456)
                      ......++.++.++++++... .++.    ...++..+.+..+.+....    .....+....+..+...+     +..+
T Consensus       197 ~~~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~-----l~~l  262 (353)
T d1jl5a_         197 LPELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSG-----LSEL  262 (353)
T ss_dssp             CCCCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSE-----ESCC
T ss_pred             ccccccccccccccccccccc-cccc----ccccccccccccccccccc----cccccccccccccccccc-----cccc
Confidence            123455677777777776544 3322    2445666666666554321    123445555554444331     1111


Q ss_pred             -CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEc
Q 048657          341 -SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHL  419 (456)
Q Consensus       341 -~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l  419 (456)
                       ......++..+.+..    ....+++|++|++++|+++.. |.   .+++|++|++++|+++..+ .  .+.+|++|++
T Consensus       263 ~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~L~~l~-~--~~~~L~~L~L  331 (353)
T d1jl5a_         263 PPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLAEVP-E--LPQNLKQLHV  331 (353)
T ss_dssp             CTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC-C--CCTTCCEEEC
T ss_pred             cchhcccccccCcccc----ccccCCCCCEEECCCCccCcc-cc---ccCCCCEEECCCCcCCccc-c--ccCCCCEEEC
Confidence             234455555554441    223356788888888877643 32   3567888888888777543 2  2457788888


Q ss_pred             cCcccCCCCCcccccCCCcceEEEcc
Q 048657          420 SKNMLHGQLKRGTFFNCSSLVTLDLS  445 (456)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~L~~L~l~  445 (456)
                      ++|++. .+|..    ..+|+.|.+.
T Consensus       332 ~~N~L~-~lp~~----~~~L~~L~~~  352 (353)
T d1jl5a_         332 EYNPLR-EFPDI----PESVEDLRMN  352 (353)
T ss_dssp             CSSCCS-SCCCC----CTTCCEEECC
T ss_pred             cCCcCC-CCCcc----ccccCeeECc
Confidence            888764 55542    3456666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.3e-20  Score=174.24  Aligned_cols=384  Identities=19%  Similarity=0.134  Sum_probs=242.0

Q ss_pred             CCCcEEEcccCcccccc-hhhhhcCCCCcEEeccCCcccc----ccCCCCCcCCCCccEEEcCCceeeecc---CCCccc
Q 048657           44 VHLQELYIDNNDLRGSL-PWCLANMTSLRILDVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPI---SLEPFF  115 (456)
Q Consensus        44 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~  115 (456)
                      .+|++|+++.+++++.. .+.+..++++++|++++|.++.    .+.. ++..+++|++|++++|.+....   ....+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            36899999999998543 4556778999999999998872    2233 4678899999999999875211   111121


Q ss_pred             -ccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhcc
Q 048657          116 -NHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENN  194 (456)
Q Consensus       116 -~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  194 (456)
                       ...+|+.|++++|.+++....                        .++..+..+++|+.|++++|.+.+.....+....
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~------------------------~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l  136 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCG------------------------VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL  136 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHH------------------------HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEECCCCCccccccc------------------------cccchhhccccccccccccccchhhhhhhhhhcc
Confidence             235788999988876532211                        2345566778899999988877654333322221


Q ss_pred             c----cceeeeecccCcCC----CCCcCccCCccccEEeCCCCccCCCCc----hhhhccCCcceEEEccCCccCCC---
Q 048657          195 T----KLIQLSVVNDSLAG----PFRLPIHSHKQLRLLDISTNNFRGHIP----VEIGDVLPSLYVFNNSMNALDGS---  259 (456)
Q Consensus       195 ~----~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~---  259 (456)
                      .    ..............    .....+...+.++.++++.+.......    ..+.........+....+.....   
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~  216 (460)
T d1z7xw1         137 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  216 (460)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             cccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence            1    12222222111111    001112344667788887765432111    11122234566777777655422   


Q ss_pred             -ccccccCCCCCcEEeccCCcCCCc----ccchhhcCCCcccEEEccCCcccccc----cccccccccccEEEccCcccc
Q 048657          260 -IPSSFGNMKFLQILDLSNNHLTGE----IPEHLAVGCVNLESLALSNNNLEGHM----FSRNFNLANLKLLQLEGNRFV  330 (456)
Q Consensus       260 -~~~~l~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~  330 (456)
                       ....+...+.++.+.+.++.+...    ...........++.+++++|.+....    ...+...+.++.+++++|.+.
T Consensus       217 ~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         217 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  296 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             cccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             223445678899999998865422    11223335678999999999876432    223446788999999999886


Q ss_pred             cccccc----c-cCCCCCcEEEcCCCcCccccCc----cccCCCCCcEEEcCCCcccccC----chhcc-CCCCCCeEeC
Q 048657          331 GEIPQS----L-SKCSSLEGLHLNNNSLSGRIPR----WLGNLTWLQYIIMPNNHLEGLI----PVEFC-QLDSLQILDI  396 (456)
Q Consensus       331 ~~~~~~----~-~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l  396 (456)
                      +.....    + .....|+.+++++|.++.....    .+..+++|++|+|++|.+++..    +..+. ..+.|++|++
T Consensus       297 ~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~L  376 (460)
T d1z7xw1         297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  376 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEEC
Confidence            432221    1 2456899999999988755333    4456789999999999987532    23333 4678999999


Q ss_pred             cCCccCCCCCccc-----ccccccEEEccCcccCCCCCccc---c-cCCCcceEEEccCcccCCC
Q 048657          397 SDNNISGSLPACF-----HPLSIKQVHLSKNMLHGQLKRGT---F-FNCSSLVTLDLSYNRLNGS  452 (456)
Q Consensus       397 ~~~~l~~~~~~~~-----~~~~L~~l~l~~~~~~~~~~~~~---~-~~~~~L~~L~l~~~~l~~~  452 (456)
                      ++|.++......+     ..++|++|++++|++........   + .+...|+.|++.+|.+..+
T Consensus       377 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            9999875432222     26799999999999853222221   2 2345799999999987643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=2.1e-15  Score=137.01  Aligned_cols=306  Identities=24%  Similarity=0.261  Sum_probs=164.0

Q ss_pred             ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcC-CCCcEEeccCCccc
Q 048657            3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANM-TSLRILDVSSNQLT   81 (456)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~i~   81 (456)
                      +++.++ ++|+    ..++|++|++++|.++.++. .   ..+|++|++++|.++ .++    .+ +.|++|++++|.++
T Consensus        46 s~~~L~-~lp~----~~~~L~~L~Ls~N~l~~lp~-~---~~~L~~L~l~~n~l~-~l~----~lp~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          46 NNLGLS-SLPE----LPPHLESLVASCNSLTELPE-L---PQSLKSLLVDNNNLK-ALS----DLPPLLEYLGVSNNQLE  111 (353)
T ss_dssp             TTSCCS-CCCS----CCTTCSEEECCSSCCSSCCC-C---CTTCCEEECCSSCCS-CCC----SCCTTCCEEECCSSCCS
T ss_pred             CCCCCC-CCCC----CCCCCCEEECCCCCCccccc-c---hhhhhhhhhhhcccc-hhh----hhccccccccccccccc
Confidence            455664 4553    36789999999999998873 3   468999999999887 332    23 46999999999998


Q ss_pred             cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCC
Q 048657           82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT  161 (456)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  161 (456)
                       .++.  +..+++|++|+++++.+..     .......+..+.+..+....                             
T Consensus       112 -~lp~--~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~l~~~~~~~~~-----------------------------  154 (353)
T d1jl5a_         112 -KLPE--LQNSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNNQLEE-----------------------------  154 (353)
T ss_dssp             -SCCC--CTTCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSS-----------------------------
T ss_pred             -cccc--hhhhccceeeccccccccc-----cccccccccchhhccccccc-----------------------------
Confidence             7775  6789999999999987652     11223455555554433211                             


Q ss_pred             chHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhc
Q 048657          162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD  241 (456)
Q Consensus       162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  241 (456)
                       ...+..++.++.+.+.++..... +.    .....+.+.........  ......++.++.+++.++... ..+.    
T Consensus       155 -~~~l~~l~~l~~L~l~~n~~~~~-~~----~~~~~~~l~~~~~~~~~--~~~~~~l~~L~~l~l~~n~~~-~~~~----  221 (353)
T d1jl5a_         155 -LPELQNLPFLTAIYADNNSLKKL-PD----LPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLK-TLPD----  221 (353)
T ss_dssp             -CCCCTTCTTCCEEECCSSCCSSC-CC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS-SCCS----
T ss_pred             -cccccccccceeccccccccccc-cc----ccccccccccccccccc--ccccccccccccccccccccc-cccc----
Confidence             11233456778888877764321 11    11112222322222211  112344555555555554432 1111    


Q ss_pred             cCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccE
Q 048657          242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL  321 (456)
Q Consensus       242 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  321 (456)
                                              ...++..+.+..+.+. ..+.    ..+.+....+..+.......    -......
T Consensus       222 ------------------------~~~~l~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~l~~----l~~~~~~  268 (353)
T d1jl5a_         222 ------------------------LPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVSENIFSGLSE----LPPNLYY  268 (353)
T ss_dssp             ------------------------CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSEESC----CCTTCCE
T ss_pred             ------------------------cccccccccccccccc-cccc----cccccccccccccccccccc----ccchhcc
Confidence                                    1223334444443332 1111    12233333333332221100    0112233


Q ss_pred             EEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCcc
Q 048657          322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI  401 (456)
Q Consensus       322 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  401 (456)
                      .++..+.+.+    ....+++|++|++++|+++ .+|..   +++|+.|++++|+++.. +.   .+++|++|++++|++
T Consensus       269 ~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~l-~~---~~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         269 LNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPL  336 (353)
T ss_dssp             EECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCC
T ss_pred             cccccCcccc----ccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCcc-cc---ccCCCCEEECcCCcC
Confidence            3444443331    1223566777777777666 44432   45677777777777643 32   245677777777777


Q ss_pred             CCCCCcccccccccEEEcc
Q 048657          402 SGSLPACFHPLSIKQVHLS  420 (456)
Q Consensus       402 ~~~~~~~~~~~~L~~l~l~  420 (456)
                      +..+ .  .+.+|+.|.+.
T Consensus       337 ~~lp-~--~~~~L~~L~~~  352 (353)
T d1jl5a_         337 REFP-D--IPESVEDLRMN  352 (353)
T ss_dssp             SSCC-C--CCTTCCEEECC
T ss_pred             CCCC-c--cccccCeeECc
Confidence            6443 2  13456666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=4.3e-16  Score=131.97  Aligned_cols=187  Identities=25%  Similarity=0.315  Sum_probs=138.0

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +.+|+.+++.++.+.. + ..+..+++|++|++++|.+. .+..  +..+++++++++++|.++..  ..+..+++|+.+
T Consensus        40 l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l  112 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (227)
T ss_dssp             HHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             cCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceee-cccc--cccccccccccccccccccc--cccccccccccc
Confidence            4577777777777663 3 34677888888888888776 3332  34678888888888877643  345678888888


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      .++++...+  ...+...+.++.+.++++.+...  ..+..+++|++|++++|.+...  ..+..+++|++|++++|+++
T Consensus       113 ~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccC
Confidence            888887753  23456778888899888877532  3467788899999999888643  34778899999999999887


Q ss_pred             CCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccC
Q 048657          403 GSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY  446 (456)
Q Consensus       403 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  446 (456)
                      +. +....+++|++|++++|+++ .++.  ++++++|+.|++++
T Consensus       187 ~l-~~l~~l~~L~~L~Ls~N~lt-~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 DI-SPLASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CC-GGGGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEEE
T ss_pred             CC-hhhcCCCCCCEEECcCCcCC-CCcc--cccCCCCCEEEeeC
Confidence            64 33445788999999999885 4543  78899999999873

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.8e-16  Score=131.18  Aligned_cols=207  Identities=22%  Similarity=0.238  Sum_probs=132.5

Q ss_pred             CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657           21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML  100 (456)
Q Consensus        21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l  100 (456)
                      ++..+++..+.+++..  .+..+.+|++|++.+|++++ + +.+..+++|++|++++|.++ .+..  +..+++++++++
T Consensus        20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELEL   92 (227)
T ss_dssp             HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEEC
T ss_pred             HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceee-cccc--cccccccccccc
Confidence            3445566665555543  45667778888888887773 3 35777788888888888777 4433  677778888888


Q ss_pred             CCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCc
Q 048657          101 SNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI  180 (456)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  180 (456)
                      ++|.++   ....+..+++|+.+.++++.....                              ..+...+.++.+.++.+
T Consensus        93 ~~n~~~---~i~~l~~l~~L~~l~l~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~  139 (227)
T d1h6ua2          93 SGNPLK---NVSAIAGLQSIKTLDLTSTQITDV------------------------------TPLAGLSNLQVLYLDLN  139 (227)
T ss_dssp             CSCCCS---CCGGGTTCTTCCEEECTTSCCCCC------------------------------GGGTTCTTCCEEECCSS
T ss_pred             cccccc---cccccccccccccccccccccccc------------------------------chhccccchhhhhchhh
Confidence            777654   223456677777777776654311                              12233445555666555


Q ss_pred             ccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCc
Q 048657          181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI  260 (456)
Q Consensus       181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  260 (456)
                      .+....+   ...++.|+++.+..+.+....  .++.+++|+.|++++|.+. .++.  ...+++|++|++++|++++. 
T Consensus       140 ~~~~~~~---~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~-~l~~--l~~l~~L~~L~Ls~N~lt~i-  210 (227)
T d1h6ua2         140 QITNISP---LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDV-  210 (227)
T ss_dssp             CCCCCGG---GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBC-
T ss_pred             hhchhhh---hccccccccccccccccccch--hhcccccceecccCCCccC-CChh--hcCCCCCCEEECcCCcCCCC-
Confidence            5432221   345666677777666554322  3667788888888888876 3332  23478889999988887743 


Q ss_pred             cccccCCCCCcEEeccC
Q 048657          261 PSSFGNMKFLQILDLSN  277 (456)
Q Consensus       261 ~~~l~~~~~L~~L~l~~  277 (456)
                      + .++.+++|+.|++++
T Consensus       211 ~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         211 S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGTTCTTCCEEEEEE
T ss_pred             c-ccccCCCCCEEEeeC
Confidence            2 377889999998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.1e-16  Score=132.57  Aligned_cols=219  Identities=15%  Similarity=0.104  Sum_probs=159.9

Q ss_pred             cEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEcc
Q 048657          222 RLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS  301 (456)
Q Consensus       222 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  301 (456)
                      +.++.++..++ .+|..+.   ++++.++++++.+....+..|.++++|++|++++|.+...++...+..+++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56667666666 6666543   5789999999988754455688999999999999987755666666678899998876


Q ss_pred             C-CcccccccccccccccccEEEccCccccccccc-cccCCCCCcEEEcCCCcCccccCccccCCC-CCcEEEcCCCccc
Q 048657          302 N-NNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSGRIPRWLGNLT-WLQYIIMPNNHLE  378 (456)
Q Consensus       302 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~  378 (456)
                      . +.+.......+..+++|+.+++.++.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            5 466666667778899999999999988633222 233455666666677777755556666654 7888999999988


Q ss_pred             ccCchhccCCCCCCeE-eCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccC
Q 048657          379 GLIPVEFCQLDSLQIL-DISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY  446 (456)
Q Consensus       379 ~~~~~~~~~~~~L~~L-~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  446 (456)
                      ......+. .++++++ .+++|.++..+...+. +++|++|++++|++. .++...|.++++|+.+++.+
T Consensus       167 ~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         167 EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEES
T ss_pred             cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCC
Confidence            66555544 4555554 5677888877666555 689999999999985 67777788888887776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.3e-17  Score=142.87  Aligned_cols=208  Identities=15%  Similarity=0.161  Sum_probs=142.9

Q ss_pred             cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCC-cCCCcccchhhcCCCc
Q 048657          216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN-HLTGEIPEHLAVGCVN  294 (456)
Q Consensus       216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~  294 (456)
                      ....+|++|+++++.+.+.....+...+++|++++++++.+.+..+..+..+++|++|++++| .+++.....+...+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            344688899998887765444555666889999999998877666777888899999999886 4543333344556889


Q ss_pred             ccEEEccCCc-cccccc-cccc-ccccccEEEccCcc--cccc-ccccccCCCCCcEEEcCCC-cCccccCccccCCCCC
Q 048657          295 LESLALSNNN-LEGHMF-SRNF-NLANLKLLQLEGNR--FVGE-IPQSLSKCSSLEGLHLNNN-SLSGRIPRWLGNLTWL  367 (456)
Q Consensus       295 L~~L~l~~~~-~~~~~~-~~~~-~~~~L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L  367 (456)
                      |++|++++|. +++... ..+. .+++|+.|+++++.  +++. +...+.++++|++|++++| .+++.....+..+++|
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            9999998874 443221 2222 35789999998763  3322 2233457889999999887 4676777788889999


Q ss_pred             cEEEcCCC-cccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657          368 QYIIMPNN-HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH  425 (456)
Q Consensus       368 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~  425 (456)
                      ++|++++| .+++.....+..+++|+.|++++| ++......+ ...+..+++..+.++
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l-~~~lp~L~i~~~~ls  259 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL-KEALPHLQINCSHFT  259 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH-HHHSTTSEESCCCSC
T ss_pred             CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHH-HHhCccccccCccCC
Confidence            99999987 566555566788899999999988 332211111 223444556666664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1e-16  Score=131.82  Aligned_cols=172  Identities=19%  Similarity=0.266  Sum_probs=114.0

Q ss_pred             cEEeccCCcCCCcccchhhcCCCcccEEEccCCcccc-cccccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657          271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEG-HMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN  349 (456)
Q Consensus       271 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  349 (456)
                      +.++.++++++ .+|..+   .+++++|++++|.++. .....|..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            45666666666 666543   2567777777777764 334556677778888887777776666777777888888888


Q ss_pred             CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCC
Q 048657          350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLK  429 (456)
Q Consensus       350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~  429 (456)
                      +|++....++.|.++++|++|+|++|.++...+.+|..+++|+++++++|++.......+....++...+..+.+....|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            88877666677778888888888888887777777778888888888888776443333323345555566665543333


Q ss_pred             cccccCCCcceEEEccCcccC
Q 048657          430 RGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       430 ~~~~~~~~~L~~L~l~~~~l~  450 (456)
                      ..    +..++.++++.+.+.
T Consensus       167 ~~----l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 SK----VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             TT----TTTSBGGGSCTTTCC
T ss_pred             hh----hcCCEeeecCHhhCc
Confidence            32    344455566666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.8e-16  Score=133.24  Aligned_cols=86  Identities=26%  Similarity=0.235  Sum_probs=40.0

Q ss_pred             cceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccC-CccCCCccccccCCCCCcEEe
Q 048657          196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSM-NALDGSIPSSFGNMKFLQILD  274 (456)
Q Consensus       196 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~L~  274 (456)
                      .+++|+++++.+.......+..+++|++|++++|.+...++...+..++.++.+.+.. +.+....+..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3445555555444433344455555555555555544333333333344555554432 233333334445555555555


Q ss_pred             ccCCcCC
Q 048657          275 LSNNHLT  281 (456)
Q Consensus       275 l~~~~l~  281 (456)
                      ++++.+.
T Consensus       110 l~~~~l~  116 (242)
T d1xwdc1         110 ISNTGIK  116 (242)
T ss_dssp             EESCCCC
T ss_pred             cchhhhc
Confidence            5555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.1e-15  Score=124.59  Aligned_cols=162  Identities=25%  Similarity=0.330  Sum_probs=81.0

Q ss_pred             CCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccce
Q 048657           42 SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLK  121 (456)
Q Consensus        42 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  121 (456)
                      .++++++|++++++++..  +.+..+++|++|++++|+++ .++.  +.++++|++|++++|.+..   ...+..+++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIAD---ITPLANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC---CGGGTTCTTCS
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc--ccCCccccccccccccccc---ccccccccccc
Confidence            445555555555555421  23455555555555555555 3332  4555555555555554431   11344555555


Q ss_pred             EEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeee
Q 048657          122 FFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLS  201 (456)
Q Consensus       122 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  201 (456)
                      .++++++....                              ...+..+++|+.+++++|.+.. .+.  +..+++++.++
T Consensus       110 ~L~l~~~~~~~------------------------------~~~~~~l~~L~~L~l~~n~l~~-~~~--l~~~~~L~~L~  156 (199)
T d2omxa2         110 GLTLFNNQITD------------------------------IDPLKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLN  156 (199)
T ss_dssp             EEECCSSCCCC------------------------------CGGGTTCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEE
T ss_pred             ccccccccccc------------------------------ccccchhhhhHHhhhhhhhhcc-ccc--ccccccccccc
Confidence            55555443321                              0123344555555555554432 111  34555566666


Q ss_pred             ecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657          202 VVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF  249 (456)
Q Consensus       202 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  249 (456)
                      +.+|.+....  .++.+++|+.|++++|+++ .++ .+ ..+++|+.|
T Consensus       157 l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~-~i~-~l-~~L~~L~~L  199 (199)
T d2omxa2         157 FSSNQVTDLK--PLANLTTLERLDISSNKVS-DIS-VL-AKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG-GG-GGCTTCSEE
T ss_pred             cccccccCCc--cccCCCCCCEEECCCCCCC-CCc-cc-cCCCCCCcC
Confidence            6555554322  3566677777777777765 333 12 235566543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=6.3e-15  Score=122.75  Aligned_cols=165  Identities=24%  Similarity=0.308  Sum_probs=97.1

Q ss_pred             CCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEE
Q 048657          267 MKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL  346 (456)
Q Consensus       267 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  346 (456)
                      +.++++|+++++.+. .++.  ...+++|++|++++|.+++..  .+..+++|+.|++++|+++ .++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-ccccccccccc
Confidence            344555555555554 3322  124556666666666555432  2345566666666666665 232 45666677777


Q ss_pred             EcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCC
Q 048657          347 HLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG  426 (456)
Q Consensus       347 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~  426 (456)
                      ++++|.+..  ...+..+++++.+++++|.+++.  ..+..+++|+.+++++|++++.. ....+++|+.|++++|.+. 
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~-  191 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHIS-  191 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-
T ss_pred             ccccccccc--ccccccccccccccccccccccc--ccccccccccccccccccccccc-cccCCCCCCEEECCCCCCC-
Confidence            777666542  23466667777777777766532  34455667777777777776432 2334567777777777764 


Q ss_pred             CCCcccccCCCcceEEEccC
Q 048657          427 QLKRGTFFNCSSLVTLDLSY  446 (456)
Q Consensus       427 ~~~~~~~~~~~~L~~L~l~~  446 (456)
                      .++  .|.++++|+.|+|++
T Consensus       192 ~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             BCG--GGTTCTTCSEEEEEE
T ss_pred             CCh--hhcCCCCCCEEEccC
Confidence            444  267778888887763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=6.9e-15  Score=122.51  Aligned_cols=165  Identities=25%  Similarity=0.266  Sum_probs=102.6

Q ss_pred             CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657          243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL  322 (456)
Q Consensus       243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  322 (456)
                      +.++++++++.+.+...  ..+..+++|++|++++|.++ .++.  ...+++|++|++++|++++..  .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-Cccc--cccCccccccccccccccccc--ccccccccccc
Confidence            34566666666655432  23556677777777777665 3432  235667777777777666432  35566777777


Q ss_pred             EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657          323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS  402 (456)
Q Consensus       323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  402 (456)
                      ++.++.+. . ...+.+++.++.+++++|.+++  +..+..+++|+.+++++|++.+..  .+..+++|++|++++|+++
T Consensus       118 ~l~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGIS-D-INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCC-C-CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC
Confidence            77777664 2 2346667777777777776653  234566777777777777776432  3667777777777777776


Q ss_pred             CCCCcccccccccEEEccC
Q 048657          403 GSLPACFHPLSIKQVHLSK  421 (456)
Q Consensus       403 ~~~~~~~~~~~L~~l~l~~  421 (456)
                      +. +....+++|++|++++
T Consensus       192 ~l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DL-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             BC-GGGTTCTTCSEEEEEE
T ss_pred             CC-hhhcCCCCCCEEEccC
Confidence            43 3333466777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=7.9e-15  Score=121.10  Aligned_cols=161  Identities=23%  Similarity=0.296  Sum_probs=86.8

Q ss_pred             CCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEE
Q 048657          267 MKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL  346 (456)
Q Consensus       267 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  346 (456)
                      ++++++|+++++.+. ++..  ...+++|++|++++|++++...  +..+++|++|++++|.+. ..+ .+.+++.|+.|
T Consensus        39 l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccc
Confidence            344555555555444 3322  1235555555555555544322  445566666666666554 222 35566666666


Q ss_pred             EcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCC
Q 048657          347 HLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG  426 (456)
Q Consensus       347 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~  426 (456)
                      ++++|.....  ..+..+++|+.|++++|.+...  ..+..+++|+.|++.+|++++.. ....+++|++|++++|+++ 
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~-  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVS-  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCC-
Confidence            6666655422  2355566666666666666432  24556666666666666665432 2334566666666666664 


Q ss_pred             CCCcccccCCCcceEE
Q 048657          427 QLKRGTFFNCSSLVTL  442 (456)
Q Consensus       427 ~~~~~~~~~~~~L~~L  442 (456)
                      .++  .+..+++|++|
T Consensus       186 ~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         186 DIS--VLAKLTNLESL  199 (199)
T ss_dssp             CCG--GGGGCTTCSEE
T ss_pred             CCc--cccCCCCCCcC
Confidence            333  25566666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.7e-16  Score=135.63  Aligned_cols=209  Identities=19%  Similarity=0.129  Sum_probs=105.1

Q ss_pred             CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCc-cCCCCchhhhccCCcceE
Q 048657          170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNN-FRGHIPVEIGDVLPSLYV  248 (456)
Q Consensus       170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~  248 (456)
                      .+|++|+++++.+.......++..+++|++|.+.+|.+.......++.+++|++|++++|. +++..             
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~-------------  112 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-------------  112 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH-------------
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccc-------------
Confidence            3567777776665544444445555556665555554443333334445555555555542 22111             


Q ss_pred             EEccCCccCCCccccccCCCCCcEEeccCCc-CCCccc-chhhcCCCcccEEEccCCc--cccccc-ccccccccccEEE
Q 048657          249 FNNSMNALDGSIPSSFGNMKFLQILDLSNNH-LTGEIP-EHLAVGCVNLESLALSNNN--LEGHMF-SRNFNLANLKLLQ  323 (456)
Q Consensus       249 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~-~~~~~~~~~L~~L~l~~~~--~~~~~~-~~~~~~~~L~~L~  323 (456)
                                 +...+..+++|++|++++|. +.++.. ......+++|+.++++++.  +++... .....+++|++|+
T Consensus       113 -----------l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         113 -----------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             -----------HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             -----------cchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccc
Confidence                       11122345555555555542 221111 1122234556666666542  222212 1223466777777


Q ss_pred             ccCcc-ccccccccccCCCCCcEEEcCCC-cCccccCccccCCCCCcEEEcCCCcccccCchh-ccCCCCCCeEeCcCCc
Q 048657          324 LEGNR-FVGEIPQSLSKCSSLEGLHLNNN-SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVE-FCQLDSLQILDISDNN  400 (456)
Q Consensus       324 l~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~  400 (456)
                      +++|. +++.....+.++++|++|++++| .+++.....+.++++|+.|++++| ++...... ...+|+|+   +..++
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~  257 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSH  257 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCC
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCcc
Confidence            76653 44445556666777777777775 455555556667777777777776 33221222 23344443   34455


Q ss_pred             cCCCCC
Q 048657          401 ISGSLP  406 (456)
Q Consensus       401 l~~~~~  406 (456)
                      ++....
T Consensus       258 ls~~~~  263 (284)
T d2astb2         258 FTTIAR  263 (284)
T ss_dssp             SCCTTC
T ss_pred             CCCCCC
Confidence            554433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=2.5e-15  Score=123.40  Aligned_cols=170  Identities=18%  Similarity=0.161  Sum_probs=105.5

Q ss_pred             EEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCc
Q 048657          248 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGN  327 (456)
Q Consensus       248 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  327 (456)
                      .+++++++++ .+|..+  .+++++|++++|.+...++...+..+++|++|++++|.+.......+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4455555444 334333  2456677777777654455555556777777777777777666666667777777777777


Q ss_pred             cccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCc-hhccCCCCCCeEeCcCCccCCCCC
Q 048657          328 RFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIP-VEFCQLDSLQILDISDNNISGSLP  406 (456)
Q Consensus       328 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~  406 (456)
                      ++....+..|.++++|++|++++|.++...++.|..+++|++|++++|.+..... .++.  ..++...+..+.++...|
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSS
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCC
Confidence            7775556667777888888888887776666777778888888888877653211 1221  134555566655554333


Q ss_pred             cccccccccEEEccCccc
Q 048657          407 ACFHPLSIKQVHLSKNML  424 (456)
Q Consensus       407 ~~~~~~~L~~l~l~~~~~  424 (456)
                      ..  .+.++.++++.+.+
T Consensus       167 ~~--l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         167 SK--VRDVQIKDLPHSEF  182 (192)
T ss_dssp             TT--TTTSBGGGSCTTTC
T ss_pred             hh--hcCCEeeecCHhhC
Confidence            32  23344455666555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.6e-14  Score=108.60  Aligned_cols=104  Identities=27%  Similarity=0.467  Sum_probs=89.7

Q ss_pred             cEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCC
Q 048657           23 KYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN  102 (456)
Q Consensus        23 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~  102 (456)
                      |+|++++|.++.++  .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++  .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeEECCC
Confidence            68999999998886  4889999999999999998 66778999999999999999998 665  488999999999999


Q ss_pred             ceeeeccCCCcccccccceEEeccCccccc
Q 048657          103 NHFQIPISLEPFFNHSRLKFFYAENNQINA  132 (456)
Q Consensus       103 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  132 (456)
                      |++........+..+++|+.+++++|.+..
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            998744445677889999999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=3.6e-15  Score=134.80  Aligned_cols=188  Identities=19%  Similarity=0.201  Sum_probs=103.9

Q ss_pred             ccCCCCCcEEeccCCcCCCcccch---hhcCCCcccEEEccCCcccccccc-------------cccccccccEEEccCc
Q 048657          264 FGNMKFLQILDLSNNHLTGEIPEH---LAVGCVNLESLALSNNNLEGHMFS-------------RNFNLANLKLLQLEGN  327 (456)
Q Consensus       264 l~~~~~L~~L~l~~~~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~  327 (456)
                      +..+++|+.|++++|.+.+.....   ....+++|++|++++|.+......             .....+.|+.+.++++
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            445566666666666554322111   112345666666666654321100             0113456677777776


Q ss_pred             ccccc----ccccccCCCCCcEEEcCCCcCccc-----cCccccCCCCCcEEEcCCCccccc----CchhccCCCCCCeE
Q 048657          328 RFVGE----IPQSLSKCSSLEGLHLNNNSLSGR-----IPRWLGNLTWLQYIIMPNNHLEGL----IPVEFCQLDSLQIL  394 (456)
Q Consensus       328 ~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L  394 (456)
                      .+...    +...+..++.|+.|++++|.++..     +...+..+++|+.|++++|.++..    +...+..+++|+.|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            65432    223345566777777777766532     234456677777777777776532    23445667777777


Q ss_pred             eCcCCccCCCCCccc-------ccccccEEEccCcccCCC----CCcccccCCCcceEEEccCcccCC
Q 048657          395 DISDNNISGSLPACF-------HPLSIKQVHLSKNMLHGQ----LKRGTFFNCSSLVTLDLSYNRLNG  451 (456)
Q Consensus       395 ~l~~~~l~~~~~~~~-------~~~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~  451 (456)
                      ++++|.+.+.....+       ...+|++|++++|.+...    +....-.++++|+.|++++|.+..
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            777777654332222       134677777777766321    112211346778888888877754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.6e-14  Score=113.06  Aligned_cols=126  Identities=15%  Similarity=0.147  Sum_probs=79.5

Q ss_pred             cccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCe
Q 048657          314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI  393 (456)
Q Consensus       314 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  393 (456)
                      .++.++++|++++|.++ .++..+..+++|+.|++++|+++. + +.+..+++|++|++++|.++...+..+..+++|+.
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            34556667777777766 344445566777777777777663 2 34666777777777777776655555566777777


Q ss_pred             EeCcCCccCCCCC--cccccccccEEEccCcccCCCCCc---ccccCCCcceEEE
Q 048657          394 LDISDNNISGSLP--ACFHPLSIKQVHLSKNMLHGQLKR---GTFFNCSSLVTLD  443 (456)
Q Consensus       394 L~l~~~~l~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~  443 (456)
                      |++++|++..+..  ....+++|+++++++|.++ ..+.   .++..+|+|+.||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            7777777665432  1223567777777777764 3332   2466778888776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=4.5e-14  Score=127.44  Aligned_cols=243  Identities=18%  Similarity=0.153  Sum_probs=117.7

Q ss_pred             CchHHhhcCCCccEEEecCcccccccchhh---hhccccceeeeecccCcCCCC----------CcCccCCccccEEeCC
Q 048657          161 TFPKFLYHQHDLEYVDLSHIKMNGEFPTWL---LENNTKLIQLSVVNDSLAGPF----------RLPIHSHKQLRLLDIS  227 (456)
Q Consensus       161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~----------~~~l~~~~~L~~L~l~  227 (456)
                      .+...+.....++.|++++|.+.+.....+   +...+.|+.+.+..+......          ...+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            345667778889999999888765544443   234455666666554322110          1112334455555555


Q ss_pred             CCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccch------------hhcCCCcc
Q 048657          228 TNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH------------LAVGCVNL  295 (456)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~------------~~~~~~~L  295 (456)
                      +|.+.......                     +...+...++|++|++++|.+.......            .....+.|
T Consensus       102 ~n~i~~~~~~~---------------------l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L  160 (344)
T d2ca6a1         102 DNAFGPTAQEP---------------------LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL  160 (344)
T ss_dssp             SCCCCTTTHHH---------------------HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             ccccccccccc---------------------hhhhhcccccchheecccccccccccccccccccccccccccccCccc
Confidence            55444221111                     1222333445555555554432110000            01124455


Q ss_pred             cEEEccCCcccccccc----cccccccccEEEccCcccccc-----ccccccCCCCCcEEEcCCCcCccc----cCcccc
Q 048657          296 ESLALSNNNLEGHMFS----RNFNLANLKLLQLEGNRFVGE-----IPQSLSKCSSLEGLHLNNNSLSGR----IPRWLG  362 (456)
Q Consensus       296 ~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~  362 (456)
                      +.+.++++.+......    .+..++.|++|++++|.+...     ....+..+++|+.|++++|.++..    +...+.
T Consensus       161 ~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~  240 (344)
T d2ca6a1         161 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK  240 (344)
T ss_dssp             CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred             ceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccc
Confidence            6666665555432221    223445566666666655421     123344556666666666655432    233445


Q ss_pred             CCCCCcEEEcCCCcccccCch----hccC--CCCCCeEeCcCCccCCCCCccc------ccccccEEEccCccc
Q 048657          363 NLTWLQYIIMPNNHLEGLIPV----EFCQ--LDSLQILDISDNNISGSLPACF------HPLSIKQVHLSKNML  424 (456)
Q Consensus       363 ~~~~L~~L~l~~~~~~~~~~~----~~~~--~~~L~~L~l~~~~l~~~~~~~~------~~~~L~~l~l~~~~~  424 (456)
                      .+++|++|++++|.+++....    .+..  .++|++|++++|.++......+      ..++|+.|++++|.+
T Consensus       241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            566666666666666543222    2222  2456666666666543221111      134566666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.4e-14  Score=110.41  Aligned_cols=114  Identities=18%  Similarity=0.160  Sum_probs=96.7

Q ss_pred             cccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccc
Q 048657          336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSI  414 (456)
Q Consensus       336 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L  414 (456)
                      .+.++..+++|++++|+++ .++..+..+++|+.|++++|.+...  ..+..+++|++|++++|+++...+..+. +++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            4668889999999999998 5566678899999999999999865  3578899999999999999987766554 7899


Q ss_pred             cEEEccCcccCCCCCc-ccccCCCcceEEEccCcccCCCCC
Q 048657          415 KQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYNRLNGSIP  454 (456)
Q Consensus       415 ~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~p  454 (456)
                      +.|++++|.+. .++. ..+..+++|++|++++|+++ ..|
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~-~~~  128 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKK  128 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GST
T ss_pred             ccceecccccc-ccccccccccccccchhhcCCCccc-ccc
Confidence            99999999996 4443 55888999999999999997 444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.2e-13  Score=101.33  Aligned_cols=118  Identities=20%  Similarity=0.240  Sum_probs=88.2

Q ss_pred             cEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCC
Q 048657          320 KLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN  399 (456)
Q Consensus       320 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  399 (456)
                      |.|++++|.++ ..+ .+.+++.|++|++++|.++ .+|..+..+++|+.|++++|.++..  ..+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCC
Confidence            56888888887 444 4788888999999999887 6677788889999999999988754  35788889999999999


Q ss_pred             ccCCCCC-c-ccccccccEEEccCcccCCC--CCcccccCCCcceEE
Q 048657          400 NISGSLP-A-CFHPLSIKQVHLSKNMLHGQ--LKRGTFFNCSSLVTL  442 (456)
Q Consensus       400 ~l~~~~~-~-~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~~L~~L  442 (456)
                      ++++... . ...+++|+.+++++|++.+.  +...++..+|+|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8876543 2 23367888888888888532  233445567777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=4.8e-14  Score=115.67  Aligned_cols=114  Identities=22%  Similarity=0.241  Sum_probs=85.3

Q ss_pred             hhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCc
Q 048657           11 FLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLV   90 (456)
Q Consensus        11 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~   90 (456)
                      ++..+.. +++|++|+|++|.+++++  .+.++++|++|++++|.++ .++.....+++|++|++++|.++ .++  .+.
T Consensus        40 l~~sl~~-L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~--~~~  112 (198)
T d1m9la_          40 MDATLST-LKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS--GIE  112 (198)
T ss_dssp             CHHHHHH-TTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH--HHH
T ss_pred             hhhHHhc-ccccceeECcccCCCCcc--cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc--ccc
Confidence            4466777 888888888888887774  5788888888888888887 44544555667888888888887 554  367


Q ss_pred             CCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccc
Q 048657           91 HLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN  131 (456)
Q Consensus        91 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  131 (456)
                      .+++|++|++++|++........+..+++|+.|++++|.+.
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            78888888888888763333345677888888888888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.5e-11  Score=94.88  Aligned_cols=91  Identities=24%  Similarity=0.200  Sum_probs=42.5

Q ss_pred             cccccCCCCCcEEEcCCC-cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccc
Q 048657          334 PQSLSKCSSLEGLHLNNN-SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL  412 (456)
Q Consensus       334 ~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  412 (456)
                      +..+..+++|++|+++++ .++...++.|.++++|+.|++++|.++.+.+.+|..+++|++|+|++|+++......+...
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~  103 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL  103 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc
Confidence            333444444555555433 2433333444445555555555555544444445555555555555555544444444444


Q ss_pred             cccEEEccCccc
Q 048657          413 SIKQVHLSKNML  424 (456)
Q Consensus       413 ~L~~l~l~~~~~  424 (456)
                      +++.|+|++|.+
T Consensus       104 ~l~~L~L~~Np~  115 (156)
T d2ifga3         104 SLQELVLSGNPL  115 (156)
T ss_dssp             CCCEEECCSSCC
T ss_pred             cccccccCCCcc
Confidence            455555554444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4e-11  Score=93.72  Aligned_cols=109  Identities=26%  Similarity=0.240  Sum_probs=93.5

Q ss_pred             CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC-cccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccE
Q 048657          339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN-HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQ  416 (456)
Q Consensus       339 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~  416 (456)
                      .+...+.++.+++++. ..|..+..+++|++|++.++ .++.+.+.+|..+++|+.|++++|+++...+..+. .++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            4556677888888877 67788999999999999876 48877788999999999999999999988777665 789999


Q ss_pred             EEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657          417 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  450 (456)
Q Consensus       417 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  450 (456)
                      |+|++|++. .++.+.|... +|+.|+|++|++.
T Consensus        85 L~Ls~N~l~-~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCS-CCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             eeccCCCCc-ccChhhhccc-cccccccCCCccc
Confidence            999999995 8888877754 7999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=5.3e-13  Score=109.29  Aligned_cols=151  Identities=22%  Similarity=0.164  Sum_probs=108.6

Q ss_pred             cccEEEccCCc-ccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEc
Q 048657          294 NLESLALSNNN-LEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM  372 (456)
Q Consensus       294 ~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  372 (456)
                      ..+.+.+.+.. -.......+..+++|++|++++|.++ .++ .+..+++|+.|++++|.++ .++.....+++|+.|++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEEC
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccc
Confidence            34555555431 11223345677899999999999987 343 5788999999999999887 55555556678999999


Q ss_pred             CCCcccccCchhccCCCCCCeEeCcCCccCCCCC--cccccccccEEEccCcccCCCCCcc---------cccCCCcceE
Q 048657          373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLP--ACFHPLSIKQVHLSKNMLHGQLKRG---------TFFNCSSLVT  441 (456)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~---------~~~~~~~L~~  441 (456)
                      ++|.++..  ..+..+++|+.|++++|+++....  ....+++|+.|++++|++....+..         ++..+|+|+.
T Consensus       101 ~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~  178 (198)
T d1m9la_         101 SYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             SEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCE
T ss_pred             cccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCE
Confidence            99998754  457788899999999999876532  2234789999999999885433322         2567899998


Q ss_pred             EEccCcccCC
Q 048657          442 LDLSYNRLNG  451 (456)
Q Consensus       442 L~l~~~~l~~  451 (456)
                      ||  +.+++.
T Consensus       179 LD--~~~I~~  186 (198)
T d1m9la_         179 LD--GMPVDV  186 (198)
T ss_dssp             ES--SGGGTT
T ss_pred             eC--CccCCH
Confidence            75  666653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.7e-07  Score=73.14  Aligned_cols=63  Identities=24%  Similarity=0.236  Sum_probs=33.5

Q ss_pred             CCCccEEeccCCCCCCccc--ccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657           19 MPSLKYLSLSDSNSSRILD--RGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT   81 (456)
Q Consensus        19 ~~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~   81 (456)
                      +++|++|+|++|.++.+..  ..+..+++|++|++++|.+++..+-......+|+.+++++|.++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            6666666666666555432  23445566666666666665333223333345566666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=6.5e-08  Score=75.60  Aligned_cols=65  Identities=20%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             CCCCCcEEEcCCCcCccc--cCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657          339 KCSSLEGLHLNNNSLSGR--IPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG  403 (456)
Q Consensus       339 ~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  403 (456)
                      .++.|++|++++|.++..  .+..+..+++|+.|++++|.+.......+....+|+.+++++|+++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            455555555555555422  12334445555555555555554333222233345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.99  E-value=2.5e-06  Score=66.68  Aligned_cols=116  Identities=20%  Similarity=0.192  Sum_probs=80.4

Q ss_pred             hHHhhcCCCccEEeccCCC-CCCccc----ccccCCCCCcEEEcccCccccc----chhhhhcCCCCcEEeccCCccccc
Q 048657           13 QIIGESMPSLKYLSLSDSN-SSRILD----RGLCSLVHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQLTGS   83 (456)
Q Consensus        13 ~~~~~~~~~L~~L~L~~~~-~~~~~~----~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~   83 (456)
                      +.+.+..++|++|+|+++. +++-..    .++...+.|++|++++|.+.+.    +...+...+.|++|++++|.+++.
T Consensus         8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_           8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            4455557999999999754 554322    3566789999999999998743    334556678999999999988732


Q ss_pred             ----cCCCCCcCCCCccEEEcCCceeee------ccCCCcccccccceEEeccCcc
Q 048657           84 ----ISSSPLVHLTSIEELMLSNNHFQI------PISLEPFFNHSRLKFFYAENNQ  129 (456)
Q Consensus        84 ----~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~l~l~~~~  129 (456)
                          +.. ++...+.|++|+++++.+..      ......+...++|+.++++.+.
T Consensus        88 g~~~l~~-aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          88 LLARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHH-HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                222 46677889999998875431      1123344556788888776543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.90  E-value=4.1e-06  Score=65.43  Aligned_cols=36  Identities=19%  Similarity=0.075  Sum_probs=15.1

Q ss_pred             CCCCcEEEcCCCcCccc----cCccccCCCCCcEEEcCCC
Q 048657          340 CSSLEGLHLNNNSLSGR----IPRWLGNLTWLQYIIMPNN  375 (456)
Q Consensus       340 l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~  375 (456)
                      .+.|++|++++|.+++.    +...+...++|++|++++|
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            34444444444444322    1223333444444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.39  E-value=4.4e-05  Score=59.29  Aligned_cols=116  Identities=20%  Similarity=0.137  Sum_probs=78.1

Q ss_pred             hHHhhcCCCccEEeccCCC-CCCccc----ccccCCCCCcEEEcccCccccc----chhhhhcCCCCcEEeccCCccccc
Q 048657           13 QIIGESMPSLKYLSLSDSN-SSRILD----RGLCSLVHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQLTGS   83 (456)
Q Consensus        13 ~~~~~~~~~L~~L~L~~~~-~~~~~~----~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~   83 (456)
                      +.+....|.|++|+++++. ++....    .++...++|++|++++|.++..    +...+...+.++.++++++.+++.
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            3444448999999999854 654333    3455789999999999988643    334556679999999999987622


Q ss_pred             ----cCCCCCcCCCCccEEEcC--Cceeee---ccCCCcccccccceEEeccCcc
Q 048657           84 ----ISSSPLVHLTSIEELMLS--NNHFQI---PISLEPFFNHSRLKFFYAENNQ  129 (456)
Q Consensus        84 ----~~~~~~~~l~~L~~L~l~--~~~~~~---~~~~~~~~~~~~L~~l~l~~~~  129 (456)
                          +.. .+...++|+++++.  ++.+..   ...+..+...++|+.|++..+.
T Consensus        90 g~~~l~~-~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 GILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hHHHHHH-HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                222 56667889887665  455542   1223345567888888876554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.38  E-value=3.2e-05  Score=60.17  Aligned_cols=62  Identities=18%  Similarity=0.127  Sum_probs=26.7

Q ss_pred             cCCCCCcEEEcCCCcCccc----cCccccCCCCCcEEEcC--CCcccc----cCchhccCCCCCCeEeCcCC
Q 048657          338 SKCSSLEGLHLNNNSLSGR----IPRWLGNLTWLQYIIMP--NNHLEG----LIPVEFCQLDSLQILDISDN  399 (456)
Q Consensus       338 ~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~--~~~~~~----~~~~~~~~~~~L~~L~l~~~  399 (456)
                      ...+.++.+++++|.+.+.    +...+...++|+.++|.  +|.+..    .+...+...++|++|++..+
T Consensus        71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            3344555555555544322    22334445555544443  233322    12233344555555555443