Citrus Sinensis ID: 048658

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MAIDVDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFSDRLYSEEELTPEFT
Secondary Structure (PSIPRED)
ccEEEccccEEEcccccEEEEEEcEEcccccEEEEEHHHHHHHHHccccEEEEEEEEEccEEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccEEEccEEccEEEEEEEEccccccEEEEcHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEccccccHHHcccHcc
Coil and Loop (DISEMBL)
MAIDVDRTIQAVTRvkpyictmplrlddgwNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYfsdrlyseeeltpeft
Flexible Loop (DISEMBL)
maidvdrtiqavtrvkpyICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVEtlrvqvhanyRLRRIyfsdrlyseeeltpeft
Low Complexity Region (SEG)
MAIDVDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFSDRLYSEEELTPEFT
Disordered region (IsUnstruct)
****VDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFSDRLY**********
Disordered Region (DISOPRED)
**IDVDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFSDRLYSEE***P***
Disordered Region (DISEMBL)
MAIDVDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFSDRLYS*********
Disordered Region (DISPRO)
MAIDVDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFSDRLYSEEELTP*F*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAIDVDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFSDRLYSEEELTPEFT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q9VKV8	199	UPF0468 protein CG5343 OS	yes	no	0.879	0.366	0.821	5e-33
Q6PBJ2	192	UPF0468 protein C16orf80	yes	no	0.879	0.380	0.808	3e-32
Q6GL74	193	UPF0468 protein C16orf80	yes	no	0.879	0.378	0.808	3e-32
Q6GPY6	193	UPF0468 protein C16orf80	N/A	no	0.879	0.378	0.808	3e-32
Q5ZHP3	193	UPF0468 protein C16orf80	yes	no	0.879	0.378	0.808	3e-32
Q8BTU1	193	UPF0468 protein C16orf80	yes	no	0.879	0.378	0.808	3e-32
Q6B857	193	UPF0468 protein C16orf80	yes	no	0.879	0.378	0.808	3e-32
Q9Y6A4	193	UPF0468 protein C16orf80	yes	no	0.879	0.378	0.808	6e-32
Q86D25	203	UPF0468 protein C16orf80	yes	no	0.879	0.359	0.726	3e-30
Q61JK7	203	UPF0468 protein C16orf80	N/A	no	0.879	0.359	0.726	3e-30

>sp|Q9VKV8|U0468_DROME UPF0468 protein CG5343 OS=Drosophila melanogaster GN=CG5343 PE=1 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 69/73 (94%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+RLD+GWNQIQ NL+DFTRRAYGTNYVETLRVQ+HAN R+RR+YFS
Sbjct: 109 QSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYVETLRVQIHANCRIRRVYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSE+EL PEF
Sbjct: 169 DRLYSEDELPPEF 181

Drosophila melanogaster (taxid: 7227)

>sp|Q6PBJ2|CP080_DANRE UPF0468 protein C16orf80 homolog OS=Danio rerio GN=zgc:73380 PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct: 109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSE+EL  EF
Sbjct: 169 DRLYSEDELPAEF 181

Danio rerio (taxid: 7955)

>sp|Q6GL74|CP080_XENTR UPF0468 protein C16orf80 homolog OS=Xenopus tropicalis PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct: 109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSE+EL  EF
Sbjct: 169 DRLYSEDELPAEF 181

Xenopus tropicalis (taxid: 8364)

>sp|Q6GPY6|CP080_XENLA UPF0468 protein C16orf80 homolog OS=Xenopus laevis PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct: 109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSE+EL  EF
Sbjct: 169 DRLYSEDELPAEF 181

Xenopus laevis (taxid: 8355)

>sp|Q5ZHP3|CP080_CHICK UPF0468 protein C16orf80 homolog OS=Gallus gallus GN=RCJMB04_34o2 PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct: 109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSE+EL  EF
Sbjct: 169 DRLYSEDELPAEF 181

Gallus gallus (taxid: 9031)

>sp|Q8BTU1|CP080_MOUSE UPF0468 protein C16orf80 homolog OS=Mus musculus GN=Gtl3 PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct: 109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSE+EL  EF
Sbjct: 169 DRLYSEDELPAEF 181

Mus musculus (taxid: 10090)

>sp|Q6B857|CP080_BOVIN UPF0468 protein C16orf80 homolog OS=Bos taurus PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct: 109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSE+EL  EF
Sbjct: 169 DRLYSEDELPAEF 181

Bos taurus (taxid: 9913)

>sp|Q9Y6A4|CP080_HUMAN UPF0468 protein C16orf80 OS=Homo sapiens GN=C16orf80 PE=1 SV=1

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 67/73 (91%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+RLDDGWNQIQ NL DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct: 109 QSTTRVKPFICTMPMRLDDGWNQIQFNLLDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSE+EL  EF
Sbjct: 169 DRLYSEDELPAEF 181

Homo sapiens (taxid: 9606)

>sp|Q86D25|CP080_CAEEL UPF0468 protein C16orf80 homolog OS=Caenorhabditis elegans GN=C54C6.6 PE=3 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 67/73 (91%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+R+D+GWNQIQ NL+DF +RAYGTNYVETLR+Q+HAN R+RR+YF+
Sbjct: 109 QSATRVKPFICTMPMRMDEGWNQIQFNLSDFVKRAYGTNYVETLRIQIHANCRIRRVYFA 168

Query: 70  DRLYSEEELTPEF 82
           DRLY+E+EL  EF
Sbjct: 169 DRLYTEDELPAEF 181

Caenorhabditis elegans (taxid: 6239)

>sp|Q61JK7|CP080_CAEBR UPF0468 protein C16orf80 homolog OS=Caenorhabditis briggsae GN=CBG09753 PE=3 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 67/73 (91%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q+ TRVKP+ICTMP+R+D+GWNQIQ NL+DF +RAYGTNYVETLR+Q+HAN R+RR+YF+
Sbjct: 109 QSATRVKPFICTMPMRMDEGWNQIQFNLSDFVKRAYGTNYVETLRIQIHANCRIRRVYFA 168

Query: 70  DRLYSEEELTPEF 82
           DRLY+E+EL  EF
Sbjct: 169 DRLYTEDELPAEF 181

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
255578235	186	orf protein, putative [Ricinus communis]	0.879	0.392	0.917	4e-34
388517243	190	unknown [Lotus japonicus]	0.879	0.384	0.917	7e-34
224075878	191	predicted protein [Populus trichocarpa]	0.879	0.382	0.931	1e-33
225464011	190	PREDICTED: UPF0468 protein CG5343 [Vitis	0.879	0.384	0.931	1e-33
116791609	190	unknown [Picea sitchensis]	0.879	0.384	0.917	2e-33
357515357	218	hypothetical protein MTR_8g040630 [Medic	0.879	0.334	0.904	2e-33
357515355	255	hypothetical protein MTR_8g040630 [Medic	0.879	0.286	0.904	2e-33
297744360	224	unnamed protein product [Vitis vinifera]	0.879	0.325	0.917	2e-33
217074284	189	unknown [Medicago truncatula] gi|3884951	0.879	0.386	0.904	3e-33
147781661	199	hypothetical protein VITISV_021801 [Viti	0.879	0.366	0.917	3e-33

>gi|255578235|ref|XP_002529985.1| orf protein, putative [Ricinus communis] gi|223530508|gb|EEF32390.1| orf protein, putative [Ricinus communis]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 71/73 (97%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           QA+TRVKPYICTMPL++D+GWNQIQLNLADFTRRAYGTNYVETLRVQVHAN RLRRIYFS
Sbjct: 105 QAITRVKPYICTMPLKMDEGWNQIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFS 164

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 165 DRLYSEEELPPEF 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517243|gb|AFK46683.1| unknown [Lotus japonicus]

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 70/73 (95%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           QAVTRVKPYICTMPL++DDGWNQIQ NLADFT+RAYGTNYVETLRVQVHAN RLRRIYFS
Sbjct: 109 QAVTRVKPYICTMPLKMDDGWNQIQFNLADFTKRAYGTNYVETLRVQVHANCRLRRIYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 169 DRLYSEEELPPEF 181

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075878|ref|XP_002304809.1| predicted protein [Populus trichocarpa] gi|222842241|gb|EEE79788.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/73 (93%), Positives = 70/73 (95%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           Q VTRVKPYICTMPL+LD+GWNQIQLNLADFTRRAYGTNYVETLRVQVHAN RLRRIYFS
Sbjct: 109 QTVTRVKPYICTMPLKLDEGWNQIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 169 DRLYSEEELPPEF 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464011|ref|XP_002265223.1| PREDICTED: UPF0468 protein CG5343 [Vitis vinifera] gi|296087820|emb|CBI35076.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/73 (93%), Positives = 70/73 (95%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           QAVTRVKPYICTMPLR+D+GWN IQLNLADFTRRAYGTNYVETLRVQVHAN RLRRIYFS
Sbjct: 109 QAVTRVKPYICTMPLRMDEGWNTIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 169 DRLYSEEELPPEF 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116791609|gb|ABK26040.1| unknown [Picea sitchensis]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 69/73 (94%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           QA+TRVKPYICTMPLRLDDGWNQIQ NL DFTRRAYGTNYVETLRVQVHAN R+RRIYFS
Sbjct: 109 QAITRVKPYICTMPLRLDDGWNQIQFNLTDFTRRAYGTNYVETLRVQVHANCRIRRIYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 169 DRLYSEEELPPEF 181

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515357|ref|XP_003627967.1| hypothetical protein MTR_8g040630 [Medicago truncatula] gi|355521989|gb|AET02443.1| hypothetical protein MTR_8g040630 [Medicago truncatula]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           QAVTRVKPYICTMPLR+D+GWNQIQ NLADFT++AYGTNYVETLRVQVHAN RLRRIYFS
Sbjct: 138 QAVTRVKPYICTMPLRMDEGWNQIQFNLADFTKKAYGTNYVETLRVQVHANCRLRRIYFS 197

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 198 DRLYSEEELPPEF 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515355|ref|XP_003627966.1| hypothetical protein MTR_8g040630 [Medicago truncatula] gi|355521988|gb|AET02442.1| hypothetical protein MTR_8g040630 [Medicago truncatula]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           QAVTRVKPYICTMPLR+D+GWNQIQ NLADFT++AYGTNYVETLRVQVHAN RLRRIYFS
Sbjct: 138 QAVTRVKPYICTMPLRMDEGWNQIQFNLADFTKKAYGTNYVETLRVQVHANCRLRRIYFS 197

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 198 DRLYSEEELPPEF 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744360|emb|CBI37330.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 70/73 (95%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           QAVTRVKPYICTMPLR+D+GWN IQLNLADFTRRAYGTNYVETLRV+VHAN RLRRIYFS
Sbjct: 109 QAVTRVKPYICTMPLRMDEGWNTIQLNLADFTRRAYGTNYVETLRVKVHANCRLRRIYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 169 DRLYSEEELPPEF 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074284|gb|ACJ85502.1| unknown [Medicago truncatula] gi|388495166|gb|AFK35649.1| unknown [Medicago truncatula]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           QAVTRVKPYICTMPLR+D+GWNQIQ NLADFT++AYGTNYVETLRVQVHAN RLRRIYFS
Sbjct: 109 QAVTRVKPYICTMPLRMDEGWNQIQFNLADFTKKAYGTNYVETLRVQVHANCRLRRIYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 169 DRLYSEEELPPEF 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781661|emb|CAN62739.1| hypothetical protein VITISV_021801 [Vitis vinifera]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 70/73 (95%)

Query: 10  QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
           QAVTRVKPYICTMPLR+D+GWN IQLNLADFTRRAYGTNYVETLRV+VHAN RLRRIYFS
Sbjct: 109 QAVTRVKPYICTMPLRMDEGWNTIQLNLADFTRRAYGTNYVETLRVKVHANCRLRRIYFS 168

Query: 70  DRLYSEEELTPEF 82
           DRLYSEEEL PEF
Sbjct: 169 DRLYSEEELPPEF 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:2082184	190	BUG22 "AT3G12300" [Arabidopsis	0.879	0.384	0.876	7.7e-32
FB|FBgn0032248	199	CG5343 [Drosophila melanogaste	0.879	0.366	0.821	5.4e-31
UNIPROTKB|Q5ZHP3	193	RCJMB04_34o2 "UPF0468 protein	0.879	0.378	0.808	1.8e-30
UNIPROTKB|Q6B857	193	Q6B857 "UPF0468 protein C16orf	0.879	0.378	0.808	1.8e-30
UNIPROTKB|E2R3J4	193	C16orf80 "Uncharacterized prot	0.879	0.378	0.808	1.8e-30
UNIPROTKB|F2Z513	193	C16orf80 "Uncharacterized prot	0.879	0.378	0.808	1.8e-30
MGI|MGI:107428	193	Gtl3 "gene trap locus 3" [Mus	0.879	0.378	0.808	1.8e-30
ZFIN|ZDB-GENE-040426-1784	192	zgc:73380 "zgc:73380" [Danio r	0.879	0.380	0.808	1.8e-30
UNIPROTKB|Q9Y6A4	193	C16orf80 "UPF0468 protein C16o	0.879	0.378	0.808	3e-30
FB|FBgn0032291	293	CG17118 [Drosophila melanogast	0.879	0.249	0.602	1.5e-21

TAIR|locus:2082184 BUG22 "AT3G12300" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             QAVTRVKPYICTMPL++D+GWNQIQLNLAD TRRAYGTNY ETLRVQ+HAN RLRRIYF+
Sbjct:   109 QAVTRVKPYICTMPLKMDEGWNQIQLNLADLTRRAYGTNYAETLRVQIHANCRLRRIYFA 168

Query:    70 DRLYSEEELTPEF 82
             DRLYSEEEL PEF
Sbjct:   169 DRLYSEEELPPEF 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

FB|FBgn0032248 CG5343 [Drosophila melanogaster (taxid:7227)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 60/73 (82%), Positives = 69/73 (94%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             Q+ TRVKP+ICTMP+RLD+GWNQIQ NL+DFTRRAYGTNYVETLRVQ+HAN R+RR+YFS
Sbjct:   109 QSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYVETLRVQIHANCRIRRVYFS 168

Query:    70 DRLYSEEELTPEF 82
             DRLYSE+EL PEF
Sbjct:   169 DRLYSEDELPPEF 181

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048666 "neuron development" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

UNIPROTKB|Q5ZHP3 RCJMB04_34o2 "UPF0468 protein C16orf80 homolog" [Gallus gallus (taxid:9031)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct:   109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query:    70 DRLYSEEELTPEF 82
             DRLYSE+EL  EF
Sbjct:   169 DRLYSEDELPAEF 181

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|Q6B857 Q6B857 "UPF0468 protein C16orf80 homolog" [Bos taurus (taxid:9913)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct:   109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query:    70 DRLYSEEELTPEF 82
             DRLYSE+EL  EF
Sbjct:   169 DRLYSEDELPAEF 181

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|E2R3J4 C16orf80 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct:   109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query:    70 DRLYSEEELTPEF 82
             DRLYSE+EL  EF
Sbjct:   169 DRLYSEDELPAEF 181

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|F2Z513 C16orf80 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct:   109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query:    70 DRLYSEEELTPEF 82
             DRLYSE+EL  EF
Sbjct:   169 DRLYSEDELPAEF 181

GO:0005929 "cilium" evidence=IEA

MGI|MGI:107428 Gtl3 "gene trap locus 3" [Mus musculus (taxid:10090)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct:   109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query:    70 DRLYSEEELTPEF 82
             DRLYSE+EL  EF
Sbjct:   169 DRLYSEDELPAEF 181

GO:0005929 "cilium" evidence=IDA

ZFIN|ZDB-GENE-040426-1784 zgc:73380 "zgc:73380" [Danio rerio (taxid:7955)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 59/73 (80%), Positives = 68/73 (93%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct:   109 QSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query:    70 DRLYSEEELTPEF 82
             DRLYSE+EL  EF
Sbjct:   169 DRLYSEDELPAEF 181

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9Y6A4 C16orf80 "UPF0468 protein C16orf80" [Homo sapiens (taxid:9606)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 59/73 (80%), Positives = 67/73 (91%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             Q+ TRVKP+ICTMP+RLDDGWNQIQ NL DFTRRAYGTNY+ETLRVQ+HAN R+RR+YFS
Sbjct:   109 QSTTRVKPFICTMPMRLDDGWNQIQFNLLDFTRRAYGTNYIETLRVQIHANCRIRRVYFS 168

Query:    70 DRLYSEEELTPEF 82
             DRLYSE+EL  EF
Sbjct:   169 DRLYSEDELPAEF 181

GO:0005929 "cilium" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=TAS

FB|FBgn0032291 CG17118 [Drosophila melanogaster (taxid:7227)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 44/73 (60%), Positives = 59/73 (80%)

Query:    10 QAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFS 69
             Q+ T VKP+   MP+ +  GWNQIQ NLADFTRRAYG+NY+ET+ +Q+HAN R+RRIYF+
Sbjct:   121 QSKTSVKPFCTAMPMGMSPGWNQIQFNLADFTRRAYGSNYLETVSLQLHANVRIRRIYFA 180

Query:    70 DRLYSEEELTPEF 82
             D+LY+E EL  ++
Sbjct:   181 DKLYTEAELPNDY 193

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0048813 "dendrite morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86D25	CP080_CAEEL	No assigned EC number	0.7260	0.8795	0.3596	yes	no
Q6GL74	CP080_XENTR	No assigned EC number	0.8082	0.8795	0.3782	yes	no
Q8BTU1	CP080_MOUSE	No assigned EC number	0.8082	0.8795	0.3782	yes	no
Q6B857	CP080_BOVIN	No assigned EC number	0.8082	0.8795	0.3782	yes	no
Q9Y6A4	CP080_HUMAN	No assigned EC number	0.8082	0.8795	0.3782	yes	no
Q6PBJ2	CP080_DANRE	No assigned EC number	0.8082	0.8795	0.3802	yes	no
Q9VKV8	U0468_DROME	No assigned EC number	0.8219	0.8795	0.3668	yes	no
Q5ZHP3	CP080_CHICK	No assigned EC number	0.8082	0.8795	0.3782	yes	no
Q499T7	CP080_RAT	No assigned EC number	0.8333	0.4337	0.2195	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_III2523 hypothetical protein (191 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
pfam05018	190	pfam05018, DUF667, Protein of unknown function (DU	4e-43

>gnl|CDD|191163 pfam05018, DUF667, Protein of unknown function (DUF667)

 Score =  137 bits (347), Expect = 4e-43
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query: 8   TIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIY 67
             Q+VTRVKP+ICTMPLRLD GWNQIQ NL+DFTRRAYGTNY+ETLRVQ+HAN R+RR+Y
Sbjct: 107 NYQSVTRVKPFICTMPLRLDPGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVY 166

Query: 68  FSDRLYSEEELTPEF 82
           F DRLY+E+EL PE 
Sbjct: 167 FCDRLYTEDELPPEL 181

This family of proteins are highly conserved in eukaryotes. Some proteins in the family are annotated as transcription factors. However, there is currently no support for this in the literature. Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
KOG3213	238	consensus Transcription factor IIB [Transcription]	100.0
PF05018	190	DUF667: Protein of unknown function (DUF667); Inte	100.0

>KOG3213 consensus Transcription factor IIB [Transcription]

Probab=100.00  E-value=3.8e-39  Score=243.94  Aligned_cols=78  Identities=71%  Similarity=1.145  Sum_probs=77.0

Q ss_pred             ccCeeeeeeeeeeEEeeccccCcccchhhccHHHHHHHHhCcceeeEEEEEEecceeeEEeeecccCCCccCCCCCCC
Q 048658            6 DRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFSDRLYSEEELTPEFT   83 (83)
Q Consensus         6 ~Snfq~~trV~p~~c~mPL~L~~gWn~i~~nL~~~t~~aygT~Y~et~rv~IhANCRlRRIYFsdrlYs~~eLP~efk   83 (83)
                      .||||++++|+|++|+|||+|++||||||+||+|||+++||++|.||++||||||||||||||+|++|+++|+|++||
T Consensus       105 ~Sn~~ke~~~kp~~~~mPl~m~~~W~~iqlnL~dft~~~~~~~y~etl~iql~AncriRriyf~~kl~~~~e~~~~fr  182 (238)
T KOG3213|consen  105 ASNFQKETSVKPFICTMPLVMDAGWNQIQLNLADFTRRAYGTNYGETLSIQLHANCRIRRIYFADKLYSEAELPLEFR  182 (238)
T ss_pred             eeccchhhcccceEEecceEecCcceeEEeeHHHHHHHHhccceeeEEEEEEecceEEEEEEeccccCChhhCCCcce
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999996

>PF05018 DUF667: Protein of unknown function (DUF667); InterPro: IPR007714 This family of proteins are highly conserved in eukaryotes

Probab=100.00  E-value=1.8e-37  Score=225.80  Aligned_cols=78  Identities=64%  Similarity=1.128  Sum_probs=76.8

Q ss_pred             ccCeeeeeeeeeeEEeeccccCcccchhhccHHHHHHHHhCcceeeEEEEEEecceeeEEeeecccCCCccCCCCCCC
Q 048658            6 DRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRVQVHANYRLRRIYFSDRLYSEEELTPEFT   83 (83)
Q Consensus         6 ~Snfq~~trV~p~~c~mPL~L~~gWn~i~~nL~~~t~~aygT~Y~et~rv~IhANCRlRRIYFsdrlYs~~eLP~efk   83 (83)
                      .||+|++++++|++|+|||.|++|||+|+|||+++|+++|||+|+||++|+||||||||||||||++|++||||+|||
T Consensus       105 ~Sn~~k~~~~~~~~~~iPl~l~~~W~~l~idL~~~~~~~y~~~~~~sl~i~I~ancrlRrIyfsD~ly~~~elp~~~~  182 (190)
T PF05018_consen  105 FSNFQKETKVTPFHCQIPLRLSPGWNNLQIDLADLTRRAYGTNYFESLRIQICANCRLRRIYFSDRLYSEDELPPEFK  182 (190)
T ss_pred             EeeeeccccccccEEEcccccCCCcEEEEEEHHHHHHHHhccCceEEEEEEEecCEEEEEEEecCccCChhhCchhhE
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999999996

Some proteins in the family are annotated as transcription factors. However, there is currently no support for this in the literature.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00