Citrus Sinensis ID: 048669

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
MGSSVFIGPEESKRTSKLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKRRRVSQSKTFKVEISVAAKIPLQAIAAALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKDRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLTWR
ccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccHHHHHcccccccEEEEEEEEEEEEcHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccEEccccccEEcccccccccccccccccccccccccccccEEEEHHHHHHHHccccccccccccEEEEcccccccEEccccEEEcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccEEcccEEEEEEEEEcccEEEccccccccEEEEEccccccHHHHHHHHHHHcccccccccccccEEEccccccccccHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHEEcccEEEEEccccccHHHHHHHHHHHHHccccEEEcccccccccccccccccEEEEEEEcccccccccccccEEEEEEEcccccccEEEEEEEEccccEEEccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEccccccc
cccEEEEcccccccccEEEEccccEEEEccccccccEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEEEHccHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccEccccccccccEEEEHHcccccccHHHHHHHHHccccEEEEEccccccccEEEccccccccccccEEEEHHHHHHHHccEEEEEcccccccccccccccccccHHHHHHccHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEccccEEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHccccccccccccccccccHccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEEEEEccccEEEEEEEcEcccccccHHHHHEEEEEEEEEcccccEEEccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHEEEEEEcccHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccEEEEEEcccccc
mgssvfigpeeskrtsklgptgekslftisalphkKMEFLVLldnpssyrttsndspdghgsnnerdrkrrrvsqsKTFKVEISVAAKIPLQAIAAALhgqesqnsrEAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVrqsffqneprsffdlgggvlgcwgfhssfqatqgglslnigvkdrnddvkcvdVTVFDYFVNHrrinlcfsgdfpcidvgkprkptyipieLCSLLSLQRYTKALTVFQRSALveksqqkpqekMKIITDDSMEHYAQVMRsnkndsepmlrscgisiNSRFAQVEgrilsaprifvpaakidHWAVanfsggcdirSLCRDLIrfgemkristspplnvfeenpqfrrapapvrVDRMFEQMKQKfekrpcfllcllpdrkdsdlygswkrktlsefgifnqclaptkvNEQYLMNVLLKINAKLGGLNSLLAIeqsknlplvskvptiifgmdvshgspghsnvpSVAAVVssrnwpilSRYRASVRSQSTKLEMIDSlfkplpnkddaGIVRELLVDFYkssgqtkpsqIIIFRSTLTWR
mgssvfigpeeskrtsklgptgeKSLFTISALPHKKMEFLVLLDNPSSyrttsndspdghgsnnerdrkrrrvsqsktfkveisVAAKIPLQAIAAAlhgqesqnsREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKDRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRsalveksqqkpqekmKIITDDSMEHYAQVMRsnkndsepmLRSCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGGCDIRSLCRDLIRFGemkristspplnvfeenpqfrrapapvRVDRMFEQMKQkfekrpcfllcLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVssrnwpilsryrasvrsqstKLEMIDSLfkplpnkddAGIVRELLVDFykssgqtkpsqiiifrstltwr
MGSSVFIGPEESKRTSKLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKRRRVSQSKTFKVEISVaakiplqaiaaalHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKDRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHsnvpsvaavvssRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLTWR
**************************FTISALPHKKMEFLVLL***********************************FKVEISVAAKIPLQAIAAALHG*******EAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKDRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSAL***************************************SCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRI***************************F***KQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSH********PSVAAVVSSRNWPILSRYRASV******LEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTL***
**SSVFIGPEESKRTSKLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRT**************************TFKVEISVAAKIPLQAIAAALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKDRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKA****QRSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSP*****PSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLTW*
*******************PTGEKSLFTISALPHKKMEFLVLLDNPSS****************************KTFKVEISVAAKIPLQAIAAALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKDRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALV**********MKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLTWR
***SVFIGPEESKRTSKLGPTGEKSLFTISALPHKKMEFLVLLDNP***************************SQSKTFKVEISVAAKIPLQAIAAALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKDRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGS*GHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLTW*
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MGSSVFIGPEESKRTSKLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKRRRVSQSKTFKVEISVAAKIPLQAIAAALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKDRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLTWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query568 2.2.26 [Sep-21-2011]
Q9SDG8 904 Protein argonaute 4A OS=O yes no 0.654 0.411 0.578 1e-134
Q6YSJ5 883 Protein argonaute 16 OS=O no no 0.933 0.600 0.428 1e-129
Q0JF58 911 Protein argonaute 4B OS=O no no 0.646 0.402 0.564 1e-129
Q9ZVD5 924 Protein argonaute 4 OS=Ar yes no 0.649 0.399 0.545 1e-125
Q84VQ0 896 Protein argonaute 9 OS=Ar no no 0.633 0.401 0.543 1e-119
O48771 878 Protein argonaute 6 OS=Ar no no 0.660 0.427 0.476 1e-104
Q3E984 850 Protein argonaute 8 OS=Ar no no 0.639 0.427 0.502 1e-104
Q5NBN9 889 Protein argonaute 15 OS=O no no 0.602 0.384 0.502 1e-102
Q6EU14 1082 Protein argonaute 1A OS=O no no 0.625 0.328 0.320 2e-50
Q9XGW1 988 Protein argonaute 10 OS=A no no 0.632 0.363 0.316 5e-50
>sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1 Back     alignment and function desciption
 Score =  479 bits (1233), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/403 (57%), Positives = 298/403 (73%), Gaps = 31/403 (7%)

Query: 187 VKDRNDD--VKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQ 244
           +K RN D   + V+V+V++YFV +R I L +SGDFPCI+VGKP++PTY PIELCSL+ LQ
Sbjct: 331 LKQRNGDGEPEGVEVSVYEYFVKNRGIELRYSGDFPCINVGKPKRPTYFPIELCSLVPLQ 390

Query: 245 RYTKALTVFQRSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISIN 304
           RYTKAL+  QRS+LVEKS+QKP+E+M +++D        V++ +  DSEPML SCGISI 
Sbjct: 391 RYTKALSTLQRSSLVEKSRQKPEERMSVLSD--------VLKRSNYDSEPMLNSCGISIA 442

Query: 305 SRFAQVEGRILSAPRI---------------------FVPAAKIDHWAVANFSGGCDIRS 343
             F QV GR+L AP++                      + A+ I+ WAV NFS  C+IR 
Sbjct: 443 RGFTQVAGRVLQAPKLKAGNGEDLFARNGRWNFNNKRLIKASSIEKWAVVNFSARCNIRD 502

Query: 344 LCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLL 403
           L RD+I+ G MK I    P +V EE+P  RRAPA  RVD M ++M++K   +P FLLC+L
Sbjct: 503 LVRDIIKCGGMKGIKVEDPFDVIEEDPSMRRAPAARRVDGMIDKMQKKLPGQPKFLLCVL 562

Query: 404 PDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQS 463
            +RK+SD+YG WKRK L+EFGI  QC+APT+VN+QY+ NVLLKINAKLGGLNSLL IE S
Sbjct: 563 AERKNSDIYGPWKRKCLAEFGIITQCVAPTRVNDQYITNVLLKINAKLGGLNSLLQIETS 622

Query: 464 KNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMI 523
            ++PLVSKVPTII GMDVSHGSPG S++PS+AAVVSSR WP++S+YRASVRSQS KLEMI
Sbjct: 623 PSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLVSKYRASVRSQSPKLEMI 682

Query: 524 DSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLT 566
           D LFKP   ++D G++RELLVDFY S+G+ KP Q+IIFR  ++
Sbjct: 683 DGLFKPQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIFRDGVS 725
Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2 Back     alignment and function description
>sp|Q0JF58|AGO4B_ORYSJ Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2 Back     alignment and function description
>sp|Q84VQ0|AGO9_ARATH Protein argonaute 9 OS=Arabidopsis thaliana GN=AGO9 PE=1 SV=2 Back     alignment and function description
>sp|O48771|AGO6_ARATH Protein argonaute 6 OS=Arabidopsis thaliana GN=AGO6 PE=2 SV=2 Back     alignment and function description
>sp|Q3E984|AGO8_ARATH Protein argonaute 8 OS=Arabidopsis thaliana GN=AGO8 PE=3 SV=1 Back     alignment and function description
>sp|Q5NBN9|AGO15_ORYSJ Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
218187968 871 hypothetical protein OsI_01366 [Oryza sa 0.915 0.597 0.531 1e-177
224139620 921 argonaute protein group [Populus trichoc 0.646 0.398 0.665 1e-153
359481481 866 PREDICTED: protein argonaute 4A-like [Vi 0.653 0.428 0.653 1e-151
297741753 879 unnamed protein product [Vitis vinifera] 0.651 0.420 0.655 1e-151
224089867 930 argonaute protein group [Populus trichoc 0.646 0.394 0.658 1e-150
255572903 917 eukaryotic translation initiation factor 0.654 0.405 0.636 1e-147
297739219 900 unnamed protein product [Vitis vinifera] 0.913 0.576 0.446 1e-146
449463869 915 PREDICTED: protein argonaute 4-like [Cuc 0.646 0.401 0.613 1e-143
449516890 915 PREDICTED: LOW QUALITY PROTEIN: protein 0.646 0.401 0.613 1e-142
225436053 913 PREDICTED: protein argonaute 4 [Vitis vi 0.653 0.406 0.607 1e-142
>gi|218187968|gb|EEC70395.1| hypothetical protein OsI_01366 [Oryza sativa Indica Group] Back     alignment and taxonomy information
 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 328/617 (53%), Positives = 415/617 (67%), Gaps = 97/617 (15%)

Query: 22  GEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKR-RRVSQSKTFK 80
           GEKSLFTI ALP    EF V+L++ ++ ++++N    G+ S    DRKR RR  Q+KTFK
Sbjct: 101 GEKSLFTIGALPQVNNEFTVVLEDFNTGKSSANGGSPGNDSPGN-DRKRVRRSYQTKTFK 159

Query: 81  VEISVAAKIPLQAIAAALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYR 140
           VE++ AAKIP+ AIA AL GQES+N++EA RV+DIILRQH+AK                +
Sbjct: 160 VELNFAAKIPMSAIAQALRGQESENTQEAIRVIDIILRQHSAK----------------Q 203

Query: 141 GCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGV------------- 187
           GC LVRQSFF N P +F DLGGGV+GC GFHSSF+ATQ GLSLNI V             
Sbjct: 204 GCLLVRQSFFHNNPSNFVDLGGGVMGCRGFHSSFRATQSGLSLNIDVSTTMIVKPGPVVD 263

Query: 188 -----------------------------------KDRNDD--VKCVDVTVFDYFVNHRR 210
                                              K RN D   + V+V+V++YFV +R 
Sbjct: 264 FLLANHLRIKTSPANTEYKIVGLSERNCYEQMFTLKQRNGDGEPEGVEVSVYEYFVKNRG 323

Query: 211 INLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKM 270
           I L +SGDFPCI+VGKP++PTY PIELCSL+ LQRYTKAL+  QRS+LVEKS+QKP+E+M
Sbjct: 324 IELRYSGDFPCINVGKPKRPTYFPIELCSLVPLQRYTKALSTLQRSSLVEKSRQKPEERM 383

Query: 271 KIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRI---------- 320
            +++D        V++ +  DSEPML SCGISI   F QV GR+L AP++          
Sbjct: 384 SVLSD--------VLKRSNYDSEPMLNSCGISIARGFTQVAGRVLQAPKLKAGNGEDLFA 435

Query: 321 -----------FVPAAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEEN 369
                       + A+ I+ WAV NFS  C+IR L RD+I+ G MK I    P +V EE+
Sbjct: 436 RNGRWNFNNKRLIKASSIEKWAVVNFSARCNIRDLVRDIIKCGGMKGIKVEDPFDVIEED 495

Query: 370 PQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQC 429
           P  RRAPA  RVD M ++M++K   +P FLLC+L +RK+SD+YG WKRK L+EFGI  QC
Sbjct: 496 PSMRRAPAARRVDGMIDKMQKKLPGQPKFLLCVLAERKNSDIYGPWKRKCLAEFGIITQC 555

Query: 430 LAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHS 489
           +APT+VN+QY+ NVLLKINAKLGGLNSLL IE S ++PLVSKVPTII GMDVSHGSPG S
Sbjct: 556 VAPTRVNDQYITNVLLKINAKLGGLNSLLQIETSPSIPLVSKVPTIILGMDVSHGSPGQS 615

Query: 490 NVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKS 549
           ++PS+AAVVSSR WP++S+YRASVRSQS KLEMID LFKP   ++D G++RELLVDFY S
Sbjct: 616 DIPSIAAVVSSREWPLVSKYRASVRSQSPKLEMIDGLFKPQGAQEDDGLIRELLVDFYTS 675

Query: 550 SGQTKPSQIIIFRSTLT 566
           +G+ KP Q+IIFR  ++
Sbjct: 676 TGKRKPDQVIIFRDGVS 692

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224139620|ref|XP_002323196.1| argonaute protein group [Populus trichocarpa] gi|222867826|gb|EEF04957.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359481481|ref|XP_002279115.2| PREDICTED: protein argonaute 4A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741753|emb|CBI32885.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224089867|ref|XP_002308843.1| argonaute protein group [Populus trichocarpa] gi|222854819|gb|EEE92366.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255572903|ref|XP_002527383.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223533254|gb|EEF35008.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297739219|emb|CBI28870.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463869|ref|XP_004149653.1| PREDICTED: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516890|ref|XP_004165479.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225436053|ref|XP_002275928.1| PREDICTED: protein argonaute 4 [Vitis vinifera] gi|296083994|emb|CBI24382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
TAIR|locus:2059258 924 AGO4 "ARGONAUTE 4" [Arabidopsi 0.649 0.399 0.507 8.5e-134
TAIR|locus:2179008 896 AGO9 "ARGONAUTE 9" [Arabidopsi 0.635 0.402 0.516 4e-123
TAIR|locus:2147072 850 AT5G21030 [Arabidopsis thalian 0.632 0.422 0.494 8.1e-108
TAIR|locus:2059370 878 AGO6 "ARGONAUTE 6" [Arabidopsi 0.653 0.422 0.450 1e-107
UNIPROTKB|Q69VD5 979 PHN1 "Protein argonaute PNH1" 0.413 0.240 0.338 9.5e-46
TAIR|locus:2170897 988 AGO10 "ARGONAUTE 10" [Arabidop 0.404 0.232 0.341 2.7e-45
UNIPROTKB|Q851R2 1058 MEL1 "Protein argonaute MEL1" 0.404 0.217 0.344 3e-42
TAIR|locus:2057851 997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.612 0.349 0.293 3.7e-36
ZFIN|ZDB-GENE-030131-5357 874 ago4 "argonaute RISC catalytic 0.401 0.260 0.314 6.3e-29
UNIPROTKB|F1LUQ5 860 Eif2c4 "Protein Eif2c4" [Rattu 0.614 0.405 0.283 2.3e-28
TAIR|locus:2059258 AGO4 "ARGONAUTE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 953 (340.5 bits), Expect = 8.5e-134, Sum P(2) = 8.5e-134
 Identities = 199/392 (50%), Positives = 266/392 (67%)

Query:   189 DRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTK 248
             + N + +  +VTV DYF + R I+L +S D PCI+VGKP++PTYIP+ELC+L+ LQRYTK
Sbjct:   355 NENGEFETTEVTVADYFRDTRHIDLQYSADLPCINVGKPKRPTYIPLELCALVPLQRYTK 414

Query:   249 ALTVFQRSALVEKSQQKPQEKMKIITDD-SMEHY-AQ-VMRS-----NKNDSE------- 293
             ALT FQRSALVEKS+QKPQE+M +++    + +Y A+ ++RS     + N ++       
Sbjct:   415 ALTTFQRSALVEKSRQKPQERMTVLSKALKVSNYDAEPLLRSCGISISSNFTQVEGRVLP 474

Query:   294 -PMLR-SCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGGCDIRSLCRDLIRF 351
              P L+  CG   +  F +  GR     + FV   KI  W V NFS  C++R +  DLI+ 
Sbjct:   475 APKLKMGCG---SETFPR-NGRWNFNNKEFVEPTKIQRWVVVNFSARCNVRQVVDDLIKI 530

Query:   352 GEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDL 411
             G  K I  + P  VFEE  QFRRAP  +RV+ MF+ ++ K    P F+LC+LPD+K+SDL
Sbjct:   531 GGSKGIEIASPFQVFEEGNQFRRAPPMIRVENMFKDIQSKLPGVPQFILCVLPDKKNSDL 590

Query:   412 YGSWKRKTLSEFGIFNQCLAPTKV-NEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVS 470
             YG WK+K L+EFGI  QC+APT+  N+QYL N+LLKINAKLGGLNS+L++E++    ++S
Sbjct:   591 YGPWKKKNLTEFGIVTQCMAPTRQPNDQYLTNLLLKINAKLGGLNSMLSVERTPAFTVIS 650

Query:   471 KVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFKPL 530
             KVPTII GMDVSHGSPG             R WP++S+YRASVR+Q +K EMI+SL K  
Sbjct:   651 KVPTIILGMDVSHGSPGQSDVPSIAAVVSSREWPLISKYRASVRTQPSKAEMIESLVKKN 710

Query:   531 PNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 562
               +DD GI++ELLVDFY SS + KP  IIIFR
Sbjct:   711 GTEDD-GIIKELLVDFYTSSNKRKPEHIIIFR 741
GO:0005634 "nucleus" evidence=ISM
GO:0006342 "chromatin silencing" evidence=RCA;IMP
GO:0005730 "nucleolus" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005719 "nuclear euchromatin" evidence=IDA
GO:0015030 "Cajal body" evidence=IDA
GO:0051567 "histone H3-K9 methylation" evidence=RCA;IMP
GO:0006306 "DNA methylation" evidence=RCA;IMP
GO:0010495 "long-distance posttranscriptional gene silencing" evidence=IMP
GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP
GO:0031048 "chromatin silencing by small RNA" evidence=RCA;TAS
GO:0030422 "production of siRNA involved in RNA interference" evidence=IGI
GO:0035197 "siRNA binding" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006260 "DNA replication" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009555 "pollen development" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0016569 "covalent chromatin modification" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
TAIR|locus:2179008 AGO9 "ARGONAUTE 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147072 AT5G21030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059370 AGO6 "ARGONAUTE 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5357 ago4 "argonaute RISC catalytic component 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
OsI_01366
Putative uncharacterized protein (810 aa)
(Oryza sativa Indica)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 0.0
cd04657 426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 9e-71
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 7e-70
pfam02171 296 pfam02171, Piwi, Piwi domain 1e-31
smart00950 301 smart00950, Piwi, This domain is found in the prot 8e-31
cd04658 448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 8e-21
cd02826 393 cd02826, Piwi-like, Piwi-like: PIWI domain 1e-15
pfam02170114 pfam02170, PAZ, PAZ domain 9e-12
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 1e-10
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 1e-09
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score =  652 bits (1683), Expect = 0.0
 Identities = 255/395 (64%), Positives = 311/395 (78%), Gaps = 29/395 (7%)

Query: 189 DRNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTK 248
              ++V+ V++TV+DYFV HR I L +SGD PCI+VGKP++PTY PIELCSL+SLQRYTK
Sbjct: 331 GNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTK 390

Query: 249 ALTVFQRSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFA 308
           AL+  QRS+LVEKS+QKPQE+MK++TD         ++S+  D++PMLRSCGISI+S+F 
Sbjct: 391 ALSTLQRSSLVEKSRQKPQERMKVLTD--------ALKSSNYDADPMLRSCGISISSQFT 442

Query: 309 QVEGRILSAPRI---------------------FVPAAKIDHWAVANFSGGCDIRSLCRD 347
           QVEGR+L AP++                      V   KI+ WAV NFS  CDIR L RD
Sbjct: 443 QVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVRD 502

Query: 348 LIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRK 407
           LI+ GEMK I+  PP +VFEENPQFRRAP PVRV++MFEQ++ K    P FLLC+LP+RK
Sbjct: 503 LIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERK 562

Query: 408 DSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLP 467
           +SD+YG WK+K LSEFGI  QC+APT+VN+QYL NVLLKINAKLGGLNSLLAIE S ++P
Sbjct: 563 NSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIP 622

Query: 468 LVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLF 527
           LVSKVPTII GMDVSHGSPG S+VPS+AAVVSSR WP++SRYRASVR+QS K+EMIDSLF
Sbjct: 623 LVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLF 682

Query: 528 KPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 562
           KP+ +KDD GI+RELL+DFY SSG+ KP QIIIFR
Sbjct: 683 KPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFR 717

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 568
PLN03202 900 protein argonaute; Provisional 100.0
KOG1042 845 consensus Germ-line stem cell division protein Hiw 100.0
KOG1041 876 consensus Translation initiation factor 2C (eIF-2C 100.0
cd04657 426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658 448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826 393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171 302 Piwi: Piwi domain; InterPro: IPR003165 This domain 99.97
cd04659 404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 99.88
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.63
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.49
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.22
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.2
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.19
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 98.5
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 96.36
COG1431 685 Argonaute homolog, implicated in RNA metabolism [T 95.32
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.5e-102  Score=895.21  Aligned_cols=526  Identities=69%  Similarity=1.139  Sum_probs=446.0

Q ss_pred             CccccCccceeecCCCCCCceEEEEEeCCCCCCccCCCCCCCCCCCCCchhhhh-hccCCCceEEEEEEEeeccChHHHH
Q 048669           17 KLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKR-RRVSQSKTFKVEISVAAKIPLQAIA   95 (568)
Q Consensus        17 ~~~~DG~~~l~t~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~i~~~~~i~~~~l~   95 (568)
                      .+||||+++|||+++||++..++.|.++++++.+...+-+|+++++|++++.+| ++..+++.|+|+|+++++|++++|.
T Consensus       104 ~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~  183 (900)
T PLN03202        104 DFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIA  183 (900)
T ss_pred             ceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHH
Confidence            689999999999999998777788887653111100112344445554444333 3345678999999999999999999


Q ss_pred             HHhcCCCCcChHHHHHHHHHHHhhhhhhcccccchhhhhhcccccceeeecccccCCCCCCcccCCCcEEEeeceEEEEE
Q 048669           96 AALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQ  175 (568)
Q Consensus        96 ~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~fF~~~~~~~~~l~~gle~w~Gf~~Svr  175 (568)
                      +||.|.....+.++||+||||||+.++.                .+++.+||+||.+......++++|+|+|+||++|||
T Consensus       184 ~~l~~~~~~~~~~~iq~lnivlr~~~~~----------------~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr  247 (900)
T PLN03202        184 NALRGQESENSQDALRVLDIILRQHAAK----------------QGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFR  247 (900)
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHhhhhhh----------------CCCceeccccCCCCCcccccCCCceEEeeeeeeEee
Confidence            9999998888899999999999999986                568899999998765444578999999999999999


Q ss_pred             ecCCceeEEEeeee----------------------------------------------------------cCCCC---
Q 048669          176 ATQGGLSLNIGVKD----------------------------------------------------------RNDDV---  194 (568)
Q Consensus       176 ~~~~~l~LniDvs~----------------------------------------------------------~~~~~---  194 (568)
                      +++++|+||||++|                                                          .+.+|   
T Consensus       248 ~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~  327 (900)
T PLN03202        248 TTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLK  327 (900)
T ss_pred             eccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcc
Confidence            99999999999999                                                          00011   


Q ss_pred             ---------CceEEehHHHHHhhcCCcccCCC-CCceEEeCCCCCCeeEeccceeecCCccccccCCHHHHHHHHHHhcC
Q 048669          195 ---------KCVDVTVFDYFVNHRRINLCFSG-DFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQ  264 (568)
Q Consensus       195 ---------~g~~iSv~dYf~~~Y~i~L~~~p-~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mi~~t~~  264 (568)
                               .+++|||+|||+++||++|+| | ++|||++|+..+++|||||||.|+|||+++++|++.|+++||++|+.
T Consensus       328 ~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~  406 (900)
T PLN03202        328 QRNGNGNEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQ  406 (900)
T ss_pred             cCCcccccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHcc
Confidence                     134899999999999999999 7 99999999988899999999999999999999999999999999999


Q ss_pred             ChHHHHHHhhccchhHHHHHHHhcCCCCcccccccCeeecCcceEeeeEecCCCee---------------------ecc
Q 048669          265 KPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRI---------------------FVP  323 (568)
Q Consensus       265 ~P~~R~~~I~~~~~~~f~~~l~~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P~I---------------------f~~  323 (568)
                      +|.+|++.|.+        .++.++++.+++|++|||+|+++|++|+||+||||+|                     |+.
T Consensus       407 ~P~~R~~~i~~--------~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~  478 (900)
T PLN03202        407 KPQERMKVLTD--------ALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVE  478 (900)
T ss_pred             CHHHHHHHHHH--------HHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecC
Confidence            99999999988        5666667788999999999999999999999999999                     455


Q ss_pred             CcccCceEEEEeCCcccHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCCCeEEEEEc
Q 048669          324 AAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLL  403 (568)
Q Consensus       324 ~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlvil  403 (568)
                      ++++++|+++++.+.+++++|++.|.+.|+.+||.+..|..+...++.......+++++.+++++++.++..++||||||
T Consensus       479 ~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIl  558 (900)
T PLN03202        479 PTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCIL  558 (900)
T ss_pred             CCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEE
Confidence            77899999998876668999999999999999999988865432222222123456799999999988766799999999


Q ss_pred             CCCCCchhhhhhhhhcccccCceeeEeeccccChhHHHHHHHHHHhhcCCcceeccccccCCCCCcCCCCEEEEEeeecc
Q 048669          404 PDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSH  483 (568)
Q Consensus       404 p~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k~~~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~~~tMivG~DV~H  483 (568)
                      |+++++++|+.||++||+++||+||||..++.++||++|||||||+||||+||.|.++....+|++.+.+|||||+||+|
T Consensus       559 p~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtH  638 (900)
T PLN03202        559 PERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSH  638 (900)
T ss_pred             cCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeec
Confidence            97336789999999999999999999987778999999999999999999999997654445788877899999999999


Q ss_pred             CCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCCCEEEEEec
Q 048669          484 GSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRS  563 (568)
Q Consensus       484 p~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~~~lP~~IIiYRD  563 (568)
                      |+++....|||||||||+|++++++|++.+++|.+++|+|++|..+....++++|++++|+.|++.+++.+|++||||||
T Consensus       639 p~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRD  718 (900)
T PLN03202        639 GSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRD  718 (900)
T ss_pred             CCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEec
Confidence            99986457999999999996579999999999999999999985433333467899999999998876799999999999


Q ss_pred             CCCC
Q 048669          564 TLTW  567 (568)
Q Consensus       564 GVS~  567 (568)
                      |||+
T Consensus       719 GVse  722 (900)
T PLN03202        719 GVSE  722 (900)
T ss_pred             CCCH
Confidence            9996

>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
4f3t_A 861 Human Argonaute-2 - Mir-20a Complex Length = 861 6e-30
4ei1_A 859 Crystal Structure Of Human Argonaute2 Length = 859 7e-30
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 1e-11
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 2e-08
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 2e-08
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-08
2yhb_A 437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 1e-07
2yha_A 388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-07
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 6e-07
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 6e-07
4f1n_A 1046 Crystal Structure Of Kluyveromyces Polysporus Argon 2e-06
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 3e-05
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 7e-05
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 4e-04
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 5e-04
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 185/400 (46%), Gaps = 57/400 (14%)
Query: 195 KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQ 254
           + V+ TV  YF +  ++ L +    PC+ VG+ +K TY+P+E+C++++ QR  K LT  Q
Sbjct: 304 QTVECTVAQYFKDRHKLVLRYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQ 362
Query: 255 RSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRI 314
            S ++  + +           D  E  +++MRS   +++P +R  GI +      V GR+
Sbjct: 363 TSTMIRATARS--------APDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRV 414
Query: 315 LSAPRI-----------------------FVPAAKIDHWAVANFSGGCDIRSLCRDLIRF 351
           L  P I                       F    +I  WA+A F+       +   L  F
Sbjct: 415 LQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEV--HLKSF 472
Query: 352 GE-MKRISTSPPLNVFEENPQF-RRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDS 409
            E +++IS    + + +  P F + A     V+ MF  +K  +      ++ +LP +  +
Sbjct: 473 TEQLRKISRDAGMPI-QGQPCFCKYAQGADSVEPMFRHLKNTYAGLQ-LVVVILPGK--T 528
Query: 410 DLYGSWKRKTLSEFGIFNQCLAPTKVNE---QYLMNVLLKINAKLGGLNSLLAIEQSKNL 466
            +Y   KR   +  G+  QC+    V     Q L N+ LKIN KLGG+N++L     +  
Sbjct: 529 PVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILL---PQGR 585
Query: 467 PLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSL 526
           P V + P I  G DV+H   G              +    +RY A+VR Q  + E+I   
Sbjct: 586 PPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEII--- 641
Query: 527 FKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLT 566
                 +D A +VRELL+ FYKS+ + KP++II +R  ++
Sbjct: 642 ------QDLAAMVRELLIQFYKST-RFKPTRIIFYRDGVS 674
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 3e-68
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 4e-14
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 2e-58
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 9e-17
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 2e-42
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 3e-41
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 9e-41
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 4e-40
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 2e-29
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 2e-28
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 3e-27
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 1e-24
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 2e-24
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 3e-23
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 2e-12
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-04
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  235 bits (601), Expect = 3e-68
 Identities = 110/405 (27%), Positives = 184/405 (45%), Gaps = 63/405 (15%)

Query: 190 RNDDVKCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKA 249
           + +  + V+ TV  YF +  ++ L +    PC+ VG+ +K TY+P+E+C++++ QR  K 
Sbjct: 299 QQESGQTVECTVAQYFKDRHKLVLRYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKK 357

Query: 250 LTVFQRSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQ 309
           LT  Q S ++  + +   ++ + I+        ++MRS   +++P +R  GI +      
Sbjct: 358 LTDNQTSTMIRATARSAPDRQEEIS--------KLMRSASFNTDPYVREFGIMVKDEMTD 409

Query: 310 VEGRILSAPRI-----------------------FVPAAKIDHWAVANFSGG-----CDI 341
           V GR+L  P I                       F    +I  WA+A F+         +
Sbjct: 410 VTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHL 469

Query: 342 RSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLC 401
           +S    L +      +       +  +    + A     V+ MF  +K  +      ++ 
Sbjct: 470 KSFTEQLRKISRDAGM------PIQGQPCFCKYAQGADSVEPMFRHLKNTY-AGLQLVVV 522

Query: 402 LLPDRKDSDLYGSWKRKTLSEFGIFNQCLAP---TKVNEQYLMNVLLKINAKLGGLNSLL 458
           +LP +    +Y   KR   +  G+  QC+      +   Q L N+ LKIN KLGG+N++L
Sbjct: 523 ILPGKT--PVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNIL 580

Query: 459 AIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQST 518
                +  P V + P I  G DV+H   G    PS+AAVV S +    +RY A+VR Q  
Sbjct: 581 ---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQH 636

Query: 519 KLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRS 563
           + E+I  L            VRELL+ FYKS+   KP++II +R 
Sbjct: 637 RQEIIQDLAAM---------VRELLIQFYKSTRF-KPTRIIFYRD 671
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 100.0
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 100.0
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.94
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.93
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.93
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.93
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 99.89
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 99.72
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 99.64
3qir_A148 PIWI-like protein 2; structural genomics consortiu 99.62
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 99.43
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 99.41
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 99.3
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 97.59
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=4.5e-100  Score=876.84  Aligned_cols=476  Identities=32%  Similarity=0.530  Sum_probs=405.7

Q ss_pred             CccccCccceeecCCCCCCceEEEEEeCCCCCCccCCCCCCCCCCCCCchhhhhhccCCCceEEEEEEEeeccChHHHHH
Q 048669           17 KLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKRRRVSQSKTFKVEISVAAKIPLQAIAA   96 (568)
Q Consensus        17 ~~~~DG~~~l~t~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~   96 (568)
                      .+||||+++|||+++||+++.++++.+...            ++             .++++|+|+|+++++|++++|.+
T Consensus        93 ~~afDG~~~l~s~~~L~~~~~~~~~~v~~~------------~~-------------~~~~~~~V~I~~~~~i~l~~L~~  147 (861)
T 4f3t_A           93 KPVFDGRKNLYTAMPLPIGRDKVELEVTLP------------GE-------------GKDRIFKVSIKWVSCVSLQALHD  147 (861)
T ss_dssp             CCEECSSSEEEESSCCSCSSCEEEEECCC--------------------------------CEEEEEEEEEEEEHHHHHH
T ss_pred             eEEEcCcceEEECCcCCCCCcceEEEEecC------------CC-------------CCCcEEEEEEEEeeecCHHHHHH
Confidence            369999999999999998654444443211            00             13678999999999999999999


Q ss_pred             HhcCCCCcChHHHHHHHHHHHhhhhhhcccccchhhhhhcccccceeeecccccCCCCCCcccCCCcEEEeeceEEEEEe
Q 048669           97 ALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQA  176 (568)
Q Consensus        97 ~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~fF~~~~~~~~~l~~gle~w~Gf~~Svr~  176 (568)
                      ||+|.....+.++||+||||||+.++                 +++..+||+||+++.+...++++|+|+|+|||+|||+
T Consensus       148 ~l~g~~~~~~~~~iq~Lniilr~~~~-----------------~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~  210 (861)
T 4f3t_A          148 ALSGRLPSVPFETIQALDVVMRHLPS-----------------MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRP  210 (861)
T ss_dssp             HHHTCSSSCCHHHHHHHHHHHHHHHH-----------------HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEE
T ss_pred             HhcCCCCCCcHHHHHHHHHHHHhhcc-----------------ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEe
Confidence            99999888889999999999999766                 4789999999998755446789999999999999999


Q ss_pred             cCCceeEEEeeee-------------------------------------------------------------------
Q 048669          177 TQGGLSLNIGVKD-------------------------------------------------------------------  189 (568)
Q Consensus       177 ~~~~l~LniDvs~-------------------------------------------------------------------  189 (568)
                      ++++|+||+|+||                                                                   
T Consensus       211 ~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~p  290 (861)
T 4f3t_A          211 SLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRP  290 (861)
T ss_dssp             CSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEE
T ss_pred             cCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCC
Confidence            9999999999999                                                                   


Q ss_pred             cC-CCC-----Cc--eEEehHHHHHhhcCCcccCCCCCceEEeCCCCCCeeEeccceeecCCccccccCCHHHHHHHHHH
Q 048669          190 RN-DDV-----KC--VDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEK  261 (568)
Q Consensus       190 ~~-~~~-----~g--~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mi~~  261 (568)
                      .+ .+|     +|  .+|||+|||+++||++|+| |+||||++|++++++|||||||.|++||+++++|+++|+++||++
T Consensus       291 a~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~  369 (861)
T 4f3t_A          291 ASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRA  369 (861)
T ss_dssp             TTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEeecCCCCceeEEHHHHHHHhcCcccCC-CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHH
Confidence            00 012     23  4799999999999999999 999999999988899999999999999999999999999999999


Q ss_pred             hcCChHHHHHHhhccchhHHHHHHHhcCCCCcccccccCeeecCcceEeeeEecCCCee---------------------
Q 048669          262 SQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRI---------------------  320 (568)
Q Consensus       262 t~~~P~~R~~~I~~~~~~~f~~~l~~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P~I---------------------  320 (568)
                      |+.+|.+|.+.|.+        .++.++++.+++|++|||+|+++|++|+||+||||+|                     
T Consensus       370 ~~~~P~~R~~~I~~--------~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~  441 (861)
T 4f3t_A          370 TARSAPDRQEEISK--------LMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRN  441 (861)
T ss_dssp             HCCCHHHHHHHHHH--------HHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTT
T ss_pred             HccCHHHHHHHHHH--------HHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccC
Confidence            99999999999998        5666666677899999999999999999999999999                     


Q ss_pred             --eccCcccCceEEEEeCCc-----ccHHHHHHHHHHHhhhcCCCCCC-CCcccccCccccCCCChHHHHHHHHHHHHhc
Q 048669          321 --FVPAAKIDHWAVANFSGG-----CDIRSLCRDLIRFGEMKRISTSP-PLNVFEENPQFRRAPAPVRVDRMFEQMKQKF  392 (568)
Q Consensus       321 --f~~~~~l~~W~vv~~~~~-----~~~~~f~~~l~~~~~~~Gm~~~~-p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (568)
                        |+.++++++|+++++...     ..+++|++.|.+.|+.+||.+.. |..+...       ...++++.+++.+++..
T Consensus       442 ~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~-------~~~~~~~~~~~~l~~~~  514 (861)
T 4f3t_A          442 KQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYA-------QGADSVEPMFRHLKNTY  514 (861)
T ss_dssp             CCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEEC-------CSSSSHHHHHHHHHHHS
T ss_pred             CEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEec-------CchHHHHHHHHHHHhhc
Confidence              445667899999998642     25899999999999999999975 4332221       12356788899888764


Q ss_pred             cCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChhHHHHHHHHHHhhcCCcceeccccccCCCCCc
Q 048669          393 EKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLV  469 (568)
Q Consensus       393 ~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l  469 (568)
                       .++||||||+|+ + ++.|+.||++||+++||+||||+.+   |.++||++|||||||+||||+||.+.+.   ..|.+
T Consensus       515 -~~~qlvl~Ilp~-~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~  588 (861)
T 4f3t_A          515 -AGLQLVVVILPG-K-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPV  588 (861)
T ss_dssp             -TTCCEEEEEESS-S-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGG
T ss_pred             -CCCcEEEEEeCC-C-ccHHHHHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccc
Confidence             468999999997 4 6899999999999999999999985   5689999999999999999999998642   24555


Q ss_pred             CCCCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHH
Q 048669          470 SKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKS  549 (568)
Q Consensus       470 ~~~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~  549 (568)
                      ...+|||||+||+||++++...|||||||||+| .++++|++.+++|.+++|+|++|.         +|++++|++|++.
T Consensus       589 ~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~i~~l~---------~~~~~~L~~~~~~  658 (861)
T 4f3t_A          589 FQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLA---------AMVRELLIQFYKS  658 (861)
T ss_dssp             GGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCSCTTHH---------HHHHHHHHHHHHH
T ss_pred             cCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCCccHHHHHH---------HHHHHHHHHHHHH
Confidence            568999999999999998656899999999999 499999999999999999999876         5999999999998


Q ss_pred             hCCCCCCEEEEEecCCCC
Q 048669          550 SGQTKPSQIIIFRSTLTW  567 (568)
Q Consensus       550 n~~~lP~~IIiYRDGVS~  567 (568)
                      | +.+|++|||||||||+
T Consensus       659 ~-~~~P~~IiiyRDGVse  675 (861)
T 4f3t_A          659 T-RFKPTRIIFYRDGVSE  675 (861)
T ss_dssp             H-SCCCSEEEEEEESCCG
T ss_pred             h-CCCCceEEEEecCCCh
Confidence            7 6999999999999996
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 568
d1yvua2 392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 3e-29
d1w9ha1 316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 1e-25
d1u04a2 447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 3e-19
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 1e-12
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 3e-07
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  117 bits (295), Expect = 3e-29
 Identities = 38/233 (16%), Positives = 71/233 (30%), Gaps = 40/233 (17%)

Query: 340 DIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFL 399
                 ++LI F + K I             Q R       +  +         K    +
Sbjct: 54  RKEEFLKELINFLKNKGIKLKIKG-KSLILAQTREEAKEKLIPVI------NKIKDVDLV 106

Query: 400 LCLLPDR------KDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLM----NVLLKINA 449
           +  L +       K   LY   KR+ L +  I +Q +    +  + L     NV  ++ A
Sbjct: 107 IVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLA 165

Query: 450 KLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRY 509
           K G +   L          +        G+D+S  +     V +VA      +   L RY
Sbjct: 166 KTGNIPYKL--------KEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRY 217

Query: 510 RASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 562
             +      + ++ +                  +    +  G  K S+I++ R
Sbjct: 218 YLTSYPAFGE-KLTEKAIG-------------DVFSLLEKLGFKKGSKIVVHR 256
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
d1u04a2 447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.97
d1yvua2 392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 99.97
d1w9ha1 316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 99.96
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.96
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.56
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.44
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.97  E-value=1.9e-32  Score=286.88  Aligned_cols=274  Identities=14%  Similarity=0.101  Sum_probs=167.3

Q ss_pred             EehHHHHHhhcCCcccCCCCCceEEeC-CCCCCeeEeccceeecCCccccccCCHHHHHHH---HHHhcCChHHHHHHhh
Q 048669          199 VTVFDYFVNHRRINLCFSGDFPCIDVG-KPRKPTYIPIELCSLLSLQRYTKALTVFQRSAL---VEKSQQKPQEKMKIIT  274 (568)
Q Consensus       199 iSv~dYf~~~Y~i~L~~~p~lPll~~g-~~~~~~ylP~Elc~i~~gQ~~~~kL~~~q~~~m---i~~t~~~P~~R~~~I~  274 (568)
                      .||.-||.     .++-  .+-|+++| +++-++|||.|+|.+. +|.....+..-+.++|   ++.++.+-..|..+++
T Consensus        17 ~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~m   88 (447)
T d1u04a2          17 NSVPISQL-----NVQK--SQLLLWTNYSRKYPVILPYEVPEKF-RKIREIPMFIILDSGLLADIQNFATNEFRELVKSM   88 (447)
T ss_dssp             CEEESCCC---------------CGGGGSCCCCCCCCSBCCTHH-HHCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             Ceeehhhh-----eeee--eEEEEEecccccCcEEEechhHHHH-hhhcccceeeechHHHHHHHHhhhhHHHHHHhhhh
Confidence            45655554     4443  23388887 6677899999999999 7744333333334444   5555555555555555


Q ss_pred             ccchhHHHHHHHhcCCCCcccccccCeeecCcceEeeeEecCCCeeeccCcccCceEEEEeCCc--ccHHHHHHHHHHHh
Q 048669          275 DDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFVPAAKIDHWAVANFSGG--CDIRSLCRDLIRFG  352 (568)
Q Consensus       275 ~~~~~~f~~~l~~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P~If~~~~~l~~W~vv~~~~~--~~~~~f~~~l~~~~  352 (568)
                      .        ......+        |  ++....-+.++++|  |.+-+.    ..|.+..-...  .++-.+        
T Consensus        89 ~--------~~~~~~~--------n--~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~--------  136 (447)
T d1u04a2          89 Y--------YSLAKKY--------N--SLAKKARSTNEIGL--PFLDFR----GKEKVITEDLNSDKGIIEV--------  136 (447)
T ss_dssp             C--------C---------------------------------------------CEEEEECTTSHHHHHHH--------
T ss_pred             h--------HHhhhhH--------h--hhhcchhhhccccc--cccchh----hccceeeecccCCCchhhh--------
Confidence            4        1111111        1  44555556777777  323221    45887754322  122222        


Q ss_pred             hhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeec
Q 048669          353 EMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAP  432 (568)
Q Consensus       353 ~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~  432 (568)
                                                  ++..++.+++   ....+.+||++++.+++.|+.||+.| ...||+||||..
T Consensus       137 ----------------------------~e~~~~~~~~---~~~~~~~ii~~~~~~~~~y~~IKr~~-l~~gI~TQ~I~~  184 (447)
T d1u04a2         137 ----------------------------VEQVSSFMKG---KELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNE  184 (447)
T ss_dssp             ----------------------------HHHHHHHHTT---CSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEH
T ss_pred             ----------------------------HHHHHHHhcc---CCceEEEEEEeCCCCchHHHHHHHHH-hcCCCceEEech
Confidence                                        2333333333   23466677776634678999999987 899999999998


Q ss_pred             cc------------cChhHHHHHHHHHHhhcCCcceeccccccCCCCCcCCCCEEEEEeeeccCCCCCCCCCeEEEEEee
Q 048669          433 TK------------VNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSS  500 (568)
Q Consensus       433 ~k------------~~~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~~~tMivG~DV~Hp~~~~~~~pSiaavVaS  500 (568)
                      ++            ...+++.||+|||||||||.+|.|+      +|+   .++||||+||+|++++..  .++++++++
T Consensus       185 ~Tlk~~~~~~~~~r~~~~v~~NIlLQInaKLGG~pW~Ld------ipl---~~~MIIGiDVth~~~~~~--~~~g~a~v~  253 (447)
T d1u04a2         185 DTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLD------YRF---NYDYIIGIDVAPMKRSEG--YIGGSAVMF  253 (447)
T ss_dssp             HHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEES------CCC---SSSEEEEEEEEEECCTTT--CEEEEEEEE
T ss_pred             hhccCcccccccccchHHHHHHHHHHHHHHcCCCceEec------CCC---CccEEEEEeccccCCCCe--EEEEEEEEE
Confidence            52            2358999999999999999999996      565   679999999999987643  233333333


Q ss_pred             CCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCCCEEEEEecCCC
Q 048669          501 RNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLT  566 (568)
Q Consensus       501 ~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~~~lP~~IIiYRDGVS  566 (568)
                      .+ ...++|++.+..|.+++|+++..          .++.++|++|++.|++.+|++|||||||+.
T Consensus       254 ~~-~g~~~~~s~v~~q~~~~E~idl~----------~~i~~aL~~~~~~n~~~~P~rIIIyRDG~v  308 (447)
T d1u04a2         254 DS-QGYIRKIVPIKIGEQRGESVDMN----------EFFKEMVDKFKEFNIKLDNKKILLLRDGRI  308 (447)
T ss_dssp             ET-TSCEEEEEEEECCCCSSSSCCHH----------HHHHHHHHHHHHTTCCCTTCEEEEECSBCC
T ss_pred             eC-CCceEEEEEEEccCCCCceecHH----------HHHHHHHHHHHHHhCCCCCceEEEEECCee
Confidence            33 35689999999999999988633          489999999999875568999999999975
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure