Citrus Sinensis ID: 048681

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELNALA
Secondary Structure (PSIPRED)
cccccccccccccccEEcccccccccccHHHHccccccEEEccccccEEEccccccHHHHHHHHHHHcccccccHHHcccccccEEEccccccccccccccccccEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccHHHHHHHHccccccEEEcccccccccccEEEccccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHcHHHHHHHcccccccccccHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcHHHHHHHHHHccccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEcccEEcccccccccccHHHHcHHccc
Coil and Loop (DISEMBL)
MNSISGLFRLRNLQELHMGandlrgtlpwclenitslKVLDLYLNQLtrnissspllHLITSIEYLSTLNYLVLVSMlhfpnsftitmswrpfrmpiqsHWHLATLYVSKkffqgnipleigvyfPRLMYLNlsrnefdgsipssigdlnslkfldlshnqltgeipkhlAIGCFNLEYLVESLMFTtketsysykgkplnkmygidlscnklvgeippqigklTRVRALNlshnnltgvipsldvsynnlngkippqlvelnala
Flexible Loop (DISEMBL)
MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELNALA
Low Complexity Region (SEG)
MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELNALA
Disordered region (IsUnstruct)
******LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNNLNGKI***********
Disordered Region (DISOPRED)
MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELNALA
Disordered Region (DISEMBL)
MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELNALA
Disordered Region (DISPRO)
**SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVEL*AL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELNALA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.812	0.172	0.323	9e-22
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.966	0.205	0.303	3e-21
Q9LHP4	1141	Receptor-like protein kin	no	no	0.804	0.187	0.327	3e-20
C0LGR3	1091	Probable LRR receptor-lik	no	no	0.947	0.230	0.338	4e-20
Q9FL28	1173	LRR receptor-like serine/	no	no	0.894	0.202	0.330	9e-19
Q6XAT2	967	LRR receptor-like serine/	no	no	0.932	0.256	0.315	2e-18
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.605	0.164	0.340	2e-18
Q9LRT1	1016	Probably inactive leucine	no	no	0.883	0.231	0.332	2e-18
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.962	0.250	0.301	4e-18
Q9LJF3	1164	Receptor-like protein kin	no	no	0.943	0.215	0.318	1e-17

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  103 bits (258), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 119/269 (44%), Gaps = 53/269 (19%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNIS-----SSPLLHLITSIEY 65
           +NL  L +G N L G +PW L  I  L +LD+  N LT  I         L H+  +  +
Sbjct: 599 QNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNF 658

Query: 66  LST-----LNYLVLVSMLHFP-NSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPL 119
           LS      L  L  +  L    N F  ++    F         L  L +      G+IP 
Sbjct: 659 LSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCT-----KLLVLSLDGNSLNGSIPQ 713

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
           EIG     L  LNL +N+F GS+P ++G L+ L  L LS N LTGEIP  +         
Sbjct: 714 EIG-NLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEI--------- 763

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
                            G+  +    +DLS N   G+IP  IG L+++  L+LSHN LTG
Sbjct: 764 -----------------GQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTG 806

Query: 240 VIPS----------LDVSYNNLNGKIPPQ 258
            +P           L+VS+NNL GK+  Q
Sbjct: 807 EVPGSVGDMKSLGYLNVSFNNLGGKLKKQ 835

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 43/300 (14%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE 64
           S + RL++L  LH+  N+L G +P  L N   + V+DL  NQL+ +I SS     +T++E
Sbjct: 475 SSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSS--FGFLTALE 532

Query: 65  ----YLSTLNYLVLVSMLHFPNSFTITMSWRPFR---MPIQSHWHLATLYVSKKFFQGNI 117
               Y ++L   +  S+++  N   I  S   F     P+       +  V++  F+G+I
Sbjct: 533 LFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDI 592

Query: 118 PLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNL 177
           PLE+G     L  L L +N+F G IP + G ++ L  LD+S N L+G IP  L + C  L
Sbjct: 593 PLELGKS-TNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL-CKKL 650

Query: 178 EYLVES----------------LMFTTKETSYSYKGKPLNKMYGID------LSCNKLVG 215
            ++  +                L+   K +S  + G    +++ +       L  N L G
Sbjct: 651 THIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNG 710

Query: 216 EIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQLVELNAL 265
            IP +IG L  + ALNL  N L+G +PS          L +S N L G+IP ++ +L  L
Sbjct: 711 SIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDL 770

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 128/278 (46%), Gaps = 64/278 (23%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE 64
           SGLF LRNL +L + +N L G +P  + N +SL  L L  N++T  I S         I 
Sbjct: 436 SGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSG--------IG 487

Query: 65  YLSTLNYLVLVS-MLH--FPNSFTITMSWRPFRM-----------PIQSHWHLATLYVSK 110
            L  +N+L   S  LH   P+        +   +           P+ S   L  L VS 
Sbjct: 488 SLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSA 547

Query: 111 KFFQGNIPLEIGVYFPRLMYLN---LSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167
             F G IP  +G    RL+ LN   LS+N F GSIP+S+G  + L+ LDL  N+L+GEIP
Sbjct: 548 NQFSGKIPASLG----RLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIP 603

Query: 168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRV 227
             L                          G   N    ++LS N+L G+IP +I  L ++
Sbjct: 604 SEL--------------------------GDIENLEIALNLSSNRLTGKIPSKIASLNKL 637

Query: 228 RALNLSHNNLTGVIP---------SLDVSYNNLNGKIP 256
             L+LSHN L G +          SL++SYN+ +G +P
Sbjct: 638 SILDLSHNMLEGDLAPLANIENLVSLNISYNSFSGYLP 675

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGR3|Y4265_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 133/275 (48%), Gaps = 23/275 (8%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISS--SPLLHLITSIEYL 66
           +L NLQEL +  N + GT+P  L N T L  L++  N +T  I S  S L  L     + 
Sbjct: 332 KLENLQELQLSVNQISGTIPEELTNCTKLTHLEIDNNLITGEIPSLMSNLRSLTMFFAWQ 391

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSH----WHLATLYVSKKFFQGNIPLEIG 122
           + L   +  S+        I +S+      I        +L  L +      G IP +IG
Sbjct: 392 NKLTGNIPQSLSQCRELQAIDLSYNSLSGSIPKEIFGLRNLTKLLLLSNDLSGFIPPDIG 451

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182
                L  L L+ N   GSIPS IG+L +L F+D+S N+L G IP  ++ GC +LE+   
Sbjct: 452 -NCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDISENRLVGSIPPAIS-GCESLEF--- 506

Query: 183 SLMFTTKETSYSYKGKPLNK-MYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI 241
            L   T   S S  G  L K +  ID S N L   +PP IG LT +  LNL+ N L+G I
Sbjct: 507 -LDLHTNSLSGSLLGTTLPKSLKFIDFSDNALSSTLPPGIGLLTELTKLNLAKNRLSGEI 565

Query: 242 PS----------LDVSYNNLNGKIPPQLVELNALA 266
           P           L++  N+ +G+IP +L ++ +LA
Sbjct: 566 PREISTCRSLQLLNLGENDFSGEIPDELGQIPSLA 600

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 132/281 (46%), Gaps = 43/281 (15%)

Query: 12  NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSS-----PLLHLITS---- 62
           +L +L +  N L G +P  L N+  L+ L +Y N+LT +I SS      L HL  S    
Sbjct: 265 SLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHL 324

Query: 63  -------IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
                  I +L +L  L L S     N+FT       F   I +  +L  L V      G
Sbjct: 325 VGPISEEIGFLESLEVLTLHS-----NNFT-----GEFPQSITNLRNLTVLTVGFNNISG 374

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF 175
            +P ++G+    L  L+   N   G IPSSI +   LK LDLSHNQ+TGEIP+    G  
Sbjct: 375 ELPADLGL-LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR--GFGRM 431

Query: 176 NLEYL-VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
           NL ++ +    FT +     +    L  +   D   N L G + P IGKL ++R L +S+
Sbjct: 432 NLTFISIGRNHFTGEIPDDIFNCSNLETLSVAD---NNLTGTLKPLIGKLQKLRILQVSY 488

Query: 235 NNLTGVIP-------SLDVSY---NNLNGKIPPQLVELNAL 265
           N+LTG IP        L++ Y   N   G+IP ++  L  L
Sbjct: 489 NSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLL 529

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 136/279 (48%), Gaps = 31/279 (11%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
           +L+ L+ L++  N L G +P  L  I +LK LDL  NQLT  I    LL+    ++YL  
Sbjct: 143 KLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPR--LLYWNEVLQYLGL 200

Query: 69  LNYLVLVSMLHFPNSFTITMSW----------RPFRMPIQSHWHLATLYVSKKFFQGNIP 118
              ++  ++   P+   +T  W                I +      L VS     G IP
Sbjct: 201 RGNMLTGTL--SPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQITGVIP 258

Query: 119 LEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE 178
             IG  F ++  L+L  N+  G IP  IG + +L  LDLS N+LTG IP  L     NL 
Sbjct: 259 YNIG--FLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILG----NLS 312

Query: 179 YLVESLMFTTKETSY-SYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNL 237
           +  +  +   K T     +   ++++  + L+ N+LVG+IPP++GKL ++  LNL++NNL
Sbjct: 313 FTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFELNLANNNL 372

Query: 238 TGVIPS----------LDVSYNNLNGKIPPQLVELNALA 266
            G+IPS           +V  N L+G +P +   L +L 
Sbjct: 373 VGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLT 411

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)

Query: 103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162
           L  +Y+S     G IP+E+G   PRL  L++SRN   GSIP S G+L+ L+ L L  N L
Sbjct: 347 LERVYLSNNHLTGEIPMELG-DIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHL 405

Query: 163 TGEIPKHLAIGCFNLEYL------------------VESLMFTTKETSYSYKG------K 198
           +G +P+ L   C NLE L                  + +L      +S    G       
Sbjct: 406 SGTVPQSLG-KCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELS 464

Query: 199 PLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDVSY 248
            ++ +  +DLS N+L G+IPPQ+G    +  LNLS N  +  +PS          LDVS+
Sbjct: 465 KMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSF 524

Query: 249 NNLNGKIPPQLVELNAL 265
           N L G IPP   + + L
Sbjct: 525 NRLTGAIPPSFQQSSTL 541

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 133/268 (49%), Gaps = 33/268 (12%)

Query: 4   ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI 63
           I+ L    +LQ+L +  N+L G +P  L +ITSL+ LDL  N  +  +S   L +  +S+
Sbjct: 117 INALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDD-LFNNCSSL 175

Query: 64  EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV 123
            YLS       +S  H       T+    FR  +     L +L +S+  F GN     G+
Sbjct: 176 RYLS-------LSHNHLEGQIPSTL----FRCSV-----LNSLNLSRNRFSGNPSFVSGI 219

Query: 124 Y-FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL-V 181
           +   RL  L+LS N   GSIP  I  L++LK L L  NQ +G +P  + + C +L  + +
Sbjct: 220 WRLERLRALDLSSNSLSGSIPLGILSLHNLKELQLQRNQFSGALPSDIGL-CPHLNRVDL 278

Query: 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI 241
            S  F+ +      K K LN     D+S N L G+ PP IG +T +  L+ S N LTG +
Sbjct: 279 SSNHFSGELPRTLQKLKSLNHF---DVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKL 335

Query: 242 PS----------LDVSYNNLNGKIPPQL 259
           PS          L++S N L+G++P  L
Sbjct: 336 PSSISNLRSLKDLNLSENKLSGEVPESL 363

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 135/285 (47%), Gaps = 29/285 (10%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDL----YLNQLTRNISSSPLLHLITSIEY 65
           + NL  L + +N   G++P  L N   LK ++     ++ Q+  +  +   L  ++    
Sbjct: 325 MTNLTSLDLASNSFSGSIPSNLPNCLRLKTINFAKIKFIAQIPESFKNFQSLTSLSFSNS 384

Query: 66  LSTLNYLVLVSMLHFPN--SFTITMSWRPFRMPIQSHWH---LATLYVSKKFFQGNIPLE 120
                   L  + H  N  +  +T++++   +P         L  L ++    +G +P  
Sbjct: 385 SIQNISSALEILQHCQNLKTLVLTLNFQKEELPSVPSLQFKNLKVLIIASCQLRGTVPQW 444

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI--GCFNLE 178
           +    P L  L+LS N+  G+IP  +G LNSL +LDLS+N   GEIP  L       + E
Sbjct: 445 LS-NSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSNNTFIGEIPHSLTSLQSLVSKE 503

Query: 179 YLVES-----LMFTTKETSYS--YKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN 231
             VE        F  K T+       +P +    IDLS N L G I P+ G L ++  LN
Sbjct: 504 NAVEEPSPDFPFFKKKNTNAGGLQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLN 563

Query: 232 LSHNNLTGVIPS----------LDVSYNNLNGKIPPQLVELNALA 266
           L +NNL+G IP+          LD+S+NNL+G IPP LV+L+ L+
Sbjct: 564 LKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLS 608

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 131/276 (47%), Gaps = 25/276 (9%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPL--LHLITSIEYL-- 66
           R L+ L +  N L G LP    +  SL+ L+L  N+L+ +  S+ +  L  IT++ YL  
Sbjct: 302 RTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNL-YLPF 360

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPI-------QSHWHLATLYVSKKFFQGNIPL 119
           + ++  V +S+ +  N   + +S   F   +       QS   L  L ++  +  G +P+
Sbjct: 361 NNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPV 420

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
           E+G     L  ++LS N   G IP  I  L  L  L +  N LTG IP+ + +   NLE 
Sbjct: 421 ELG-KCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLET 479

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
           L+ +    T     S        M  I LS N L GEIP  IGKL ++  L L +N+LTG
Sbjct: 480 LILNNNLLTGSLPESIS--KCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTG 537

Query: 240 VIPS----------LDVSYNNLNGKIPPQLVELNAL 265
            IPS          LD++ NNL G +P +L     L
Sbjct: 538 NIPSELGNCKNLIWLDLNSNNLTGNLPGELASQAGL 573

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
224134597	947	predicted protein [Populus trichocarpa]	0.879	0.247	0.370	3e-30
224134609	676	predicted protein [Populus trichocarpa]	0.890	0.350	0.368	5e-30
224070714	572	predicted protein [Populus trichocarpa]	0.890	0.414	0.368	7e-30
224112253	580	predicted protein [Populus trichocarpa]	0.883	0.405	0.363	2e-29
224112233	976	leucine rich repeat family protein with	0.894	0.243	0.36	4e-29
296082109	682	unnamed protein product [Vitis vinifera]	0.913	0.356	0.358	4e-29
224102739	548	predicted protein [Populus trichocarpa]	0.921	0.447	0.369	5e-29
224124410	601	predicted protein [Populus trichocarpa]	0.890	0.394	0.349	6e-29
298204682	453	unnamed protein product [Vitis vinifera]	0.939	0.551	0.339	3e-28
224144186	973	predicted protein [Populus trichocarpa]	0.928	0.253	0.366	3e-28

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 149/297 (50%), Gaps = 63/297 (21%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
           RL  L+ L M +N   G++P+ L NI+SLK LDL  N L   I           I  +S+
Sbjct: 543 RLPGLEVLFMSSNGFNGSIPFSLGNISSLKGLDLSNNSLQGQIPGW--------IGNMSS 594

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
           L +L L       N+F+  +   P R       +L  +Y+S+   QG I +     F  +
Sbjct: 595 LEFLNLSG-----NNFSGRL---PPRFDTS---NLRYVYLSRNKLQGPIAMTFYNSF-EM 642

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA----IGCFNL------- 177
             L+LS N   GSIP  I  L++L+FL LS+N L GEIP  L     +   +L       
Sbjct: 643 FALDLSHNNLTGSIPKWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHFSG 702

Query: 178 -------------------EYLV---ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG 215
                              +YL    +S  FTTK  S SY+G  +    GID SCN  +G
Sbjct: 703 NILSWMISSHPFPQQYDSNDYLSSSQQSFEFTTKNVSLSYRGSIIQYFTGIDFSCNNFIG 762

Query: 216 EIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVEL 262
           EIPP+IG L+ ++ LNLSHN+LTG IP          SLD+SYN L+G+IPPQL+EL
Sbjct: 763 EIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPQLIEL 819

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134609|ref|XP_002327446.1| predicted protein [Populus trichocarpa] gi|222836000|gb|EEE74421.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 153/301 (50%), Gaps = 64/301 (21%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
           RL  L+ L M  N   G++P+ L NI+SL++LDL  N L   I           I  +S+
Sbjct: 272 RLPGLEVLLMSDNGFNGSVPFSLGNISSLQLLDLSNNSLQGQIPGW--------IGNMSS 323

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY-FPR 127
           L +L L       N+F+  +   P R    S+  L  +Y+S+   QG  P+ +  Y    
Sbjct: 324 LEFLDLSV-----NNFSGRL---PPRFDTSSN--LRYVYLSRNKLQG--PIAMTFYNSSE 371

Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP----------------KHLA 171
           +  L+LS N   GSIP  I  L++L+FL LS+N L GEIP                 HL+
Sbjct: 372 IFALDLSHNNLTGSIPKWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHLS 431

Query: 172 IGCFN--------------LEYLV---ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV 214
               +               +YL    +S  FTTK  S SY+G  +    GID SCN  +
Sbjct: 432 GNILSWMISSHPFPQEYDSYDYLSSSQQSFEFTTKNVSLSYRGNIIQYFTGIDFSCNNFI 491

Query: 215 GEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNA 264
           GEIPP+IG L+ ++ LNLSHN+LTG IP          SLD+SYN L+G+IPPQL+EL +
Sbjct: 492 GEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPQLIELFS 551

Query: 265 L 265
           L
Sbjct: 552 L 552

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070714|ref|XP_002303210.1| predicted protein [Populus trichocarpa] gi|222840642|gb|EEE78189.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 150/301 (49%), Gaps = 64/301 (21%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
           R   L+ L M  N   G++P+ L NI+SLK LDL  N L   I           I  +S+
Sbjct: 165 RFPGLEVLFMSGNGFNGSIPFSLGNISSLKGLDLSNNSLQGQIPGW--------IGNMSS 216

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY-FPR 127
           L +L L       N+F+  +   P R    S+  L  +Y+SK   QG  P+ +  Y    
Sbjct: 217 LEFLDLSV-----NNFSGCL---PPRFDASSN--LRYVYLSKNKLQG--PIAMTFYNSSE 264

Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP----------------KHLA 171
           +  L+LS N   GSIP  I  L++L+FL LS+N L GEIP                 HL+
Sbjct: 265 IFALDLSHNNLTGSIPKWIDKLSNLRFLLLSYNNLEGEIPIQLCRLDQLTLIDLSHNHLS 324

Query: 172 IGCFN--------------LEYLV---ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV 214
               +               +YL    +S  FTTK  S SY+G  +    GID SCN  +
Sbjct: 325 GNILSWMISSHPFPQQYDSYDYLSSSQQSFEFTTKNVSLSYRGSIIQYFTGIDFSCNNFI 384

Query: 215 GEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNA 264
           GEIPP+IG L+ ++ LNLSHN+LTG IP          SLD+SYN L+G+IPP+L EL +
Sbjct: 385 GEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFS 444

Query: 265 L 265
           L
Sbjct: 445 L 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112253|ref|XP_002332817.1| predicted protein [Populus trichocarpa] gi|222833211|gb|EEE71688.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 147/297 (49%), Gaps = 62/297 (20%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
           RL  L+ L M  N   G++P+ L NI+SL+VLDL  N L   I     +  ++S+E+L  
Sbjct: 165 RLPRLEVLFMSDNGFNGSIPFSLGNISSLEVLDLSNNSLQGLIPG--WIGNMSSLEFLD- 221

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
                 +SM +F           P R    S+  L  +Y+S+   QG I +        +
Sbjct: 222 ------LSMNNFSGRL-------PPRFGTSSN--LRYVYLSRNKLQGLITMAF-YNSSEI 265

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP----------------KHLAI 172
           + L+LS N   GSIP  I  L++L+FL LS N L GEIP                 HL+ 
Sbjct: 266 LALDLSHNNLTGSIPKWIDRLSNLRFLLLSSNNLEGEIPIRLCRLDQLTLIDLSHNHLSG 325

Query: 173 GCF-----------------NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG 215
                               +L    +S  FTTK  S SY+G  +    GID SCN  +G
Sbjct: 326 NILSWMISTHPFPQQYDSYDDLSSSQQSFEFTTKNVSLSYRGSIIQYFTGIDFSCNNFIG 385

Query: 216 EIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVEL 262
           EIPP+IG L+ ++ LNLSHN+LTG IP          SLD+SYN L+G+IPPQL+EL
Sbjct: 386 EIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPQLIEL 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 146/300 (48%), Gaps = 62/300 (20%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
           RL  L+ L M  N   G++P+ L NI+ L+VLDL  N L   I           I  +S+
Sbjct: 561 RLPGLEVLFMSENGFNGSIPFSLGNISLLEVLDLSNNSLQGQIPGW--------IGNMSS 612

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
           L +L L       N+F+  +  R       S   L  +Y+S+   QG I +        +
Sbjct: 613 LEFLDLSR-----NNFSGLLPPR-----FGSSSKLKFIYLSRNNLQGPIAMAFHDS-SEI 661

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL------------------ 170
             L+LS N+  G IP  I  L++L+FL LS+N L GEIP HL                  
Sbjct: 662 FALDLSHNDLTGRIPEWIDRLSNLRFLLLSYNNLEGEIPIHLYRLDQLTLIDLSHNHLSG 721

Query: 171 -----AIGCFN----------LEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG 215
                 I  +N          L    +S  FTTK  S SY+G  +    GID SCN   G
Sbjct: 722 NILSWMISTYNFPVENTYYDSLSSSQQSFEFTTKNVSLSYRGNIIWYFIGIDFSCNNFTG 781

Query: 216 EIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265
           +IPP+IG L+ ++ LNLSHNNLTG IP          SLD+SYN L+G+IPP+L+EL +L
Sbjct: 782 QIPPEIGNLSMLKVLNLSHNNLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLIELFSL 841

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082109|emb|CBI21114.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 146/296 (49%), Gaps = 53/296 (17%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL--- 59
           ++ GL +L+NLQEL +  N   G++  CL N+TSL+ LDL  N+ + N+ SS    L   
Sbjct: 290 ALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKL 349

Query: 60  ---------------ITSIEYLSTLNYLVLV----SMLHFPNSFTITMSWRPFRMPIQSH 100
                          I+S    S L  L L+    S LH+ +      ++    +  Q H
Sbjct: 350 EFLSLSHNVFQTFPPISSFAKHSKLEVLDLIWSIPSFLHYQHDLRAIFTFLINDLHGQIH 409

Query: 101 WHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN 160
             ++          G +P  IG     L  L +  N  +G IP     L++L+ LDLS+N
Sbjct: 410 NSIS----------GKLPGWIG-NMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNN 458

Query: 161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ 220
            L+G +P      CF       S ++ ++    S +G  L  M GIDLS NKL G IPP+
Sbjct: 459 NLSGSLPS-----CFRFS----SYLYHSQHIELS-QGNFLYSMTGIDLSSNKLTGAIPPE 508

Query: 221 IGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNALA 266
           IG L++V ALNLSHN LTG IP          SLD+SYNNL G IP +L EL  LA
Sbjct: 509 IGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLA 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102739|ref|XP_002334137.1| predicted protein [Populus trichocarpa] gi|222869660|gb|EEF06791.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 154/303 (50%), Gaps = 58/303 (19%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLH--LITSIEYL 66
           RL  L+ L M  N   G++P  L N++SL  LDL  N LT  I S+  L   +   I  +
Sbjct: 132 RLPGLEVLKMSDNGFNGSIPSSLGNMSSLFELDLSNNVLTGRILSNNSLQGQIPRCIWNM 191

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY-F 125
           S+L +L L S  +F   F       P R    S+  L  +Y+S+  FQG  P+ +  Y  
Sbjct: 192 SSLEFLDL-SGNNFSGRF-------PPRFNTSSN--LRYVYLSRNKFQG--PITMTFYDL 239

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA-------------- 171
             ++ L+LS N   G+IP  I  L++L+FL LS+N L GEIP  L+              
Sbjct: 240 AEILALDLSHNNLTGTIPKWIDRLSNLRFLLLSYNNLEGEIPIQLSRLDRLTLIDLSHNH 299

Query: 172 IGCFNLEYLV-------------------ESLMFTTKETSYSYKGKPLNKMYGIDLSCNK 212
           +    L +++                   +S  FTTK  S SY+G  +    GID SCN 
Sbjct: 300 LSGNILYWMISTHPFPQPYNSRDSMSSSQQSFEFTTKNVSLSYRGIIIWYFTGIDFSCNN 359

Query: 213 LVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVEL 262
             GEIPP+IG L+ ++ LNLSHNNLTG IP          SLD+SYN L+G+IPP+L EL
Sbjct: 360 FTGEIPPEIGNLSMIKVLNLSHNNLTGPIPPTFWNLKEIESLDLSYNKLDGEIPPRLTEL 419

Query: 263 NAL 265
            +L
Sbjct: 420 FSL 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124410|ref|XP_002330016.1| predicted protein [Populus trichocarpa] gi|222871441|gb|EEF08572.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 143/295 (48%), Gaps = 58/295 (19%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
           L NL  L M  N L  ++P C  N++SL ++DL  N+L++    SP +   + + YL   
Sbjct: 286 LPNLSILRMAMNGLTSSIPSCFGNLSSLVLIDLSDNRLSK---ISPSIFNSSLLRYLYLD 342

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
            Y     +L F  +  I               +L  L +S   F G +P   G  F  L 
Sbjct: 343 GYKFTGHVLDFQPTNEI---------------YLTALNISNNQFSGMLPTWKG-NFSNLK 386

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI------------------PKHLA 171
            +NLSRN FDG +P     L++L++LD+S N L+ ++                     L 
Sbjct: 387 AINLSRNNFDGPLPRDFCKLDNLEYLDMSENSLSEKVGATGRTTYTLKLLRKKSYETDLL 446

Query: 172 IGCFN-----------LEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ 220
            G  N            E + E + F TK  SY+YKG  LN M G DLS N+  G+IP +
Sbjct: 447 EGKINDAESPFEDITIQEQIKEEIQFITKRISYTYKGDILNLMSGFDLSTNRFSGQIPLE 506

Query: 221 IGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265
           +G L+ + +LNLSHN+LTG IP          SLD+SYN+LNG IPPQL  LN L
Sbjct: 507 MGNLSEIHSLNLSHNHLTGSIPATFSNLKQIESLDLSYNSLNGGIPPQLAVLNNL 561

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204682|emb|CBI25180.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 155/333 (46%), Gaps = 83/333 (24%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYL--- 66
           ++ L++L +  N   G LP CL N+ SL+ LDL  NQ T ++SSS L+  +TS+EY+   
Sbjct: 1   MKKLKKLDLSWNRFDGMLPTCLSNLKSLRELDLSFNQFTGSVSSS-LISNLTSLEYIHLG 59

Query: 67  --------STLNYLVLVS-----------MLHFPNSFTITMSWRPFRMPIQSHWHLA--- 104
                   S+L +L L S            +   N + + +S+  F   + S  HL    
Sbjct: 60  YNHFTGLFSSLWFLDLSSNNFSGEVPAQLTVGCTNLYYVDLSYNSFTGSLPSFSHLGFVK 119

Query: 105 ------------------------TLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDG 140
                                   TL +      G IP  IG  F  L  L+L  N F G
Sbjct: 120 HLHLQGNAFTGSIPKHVLNPEFLLTLDLGDNNISGKIPHSIGQ-FSELRVLSLRGNNFIG 178

Query: 141 SIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN----------------LEYL-VES 183
            IP+S+  L+ +  LDLS+N+ +G IP      CFN                L+Y   + 
Sbjct: 179 QIPNSLCQLSKMSILDLSNNRFSGPIPH-----CFNNMTFGKRGANENEDPYLQYDPQDE 233

Query: 184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP- 242
           + F TK     YKG  LN M G+DLS N L G IP ++G+L  + ALNL HN L G IP 
Sbjct: 234 VGFITKSRYSIYKGDILNFMSGLDLSSNDLTGRIPYELGQLNSIHALNLWHNRLIGSIPK 293

Query: 243 ---------SLDVSYNNLNGKIPPQLVELNALA 266
                    SLD+SYN+L+G+IP QL  LN LA
Sbjct: 294 DFSKLHQLESLDLSYNSLSGEIPSQLTNLNFLA 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 139/289 (48%), Gaps = 42/289 (14%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
           L  L+ L M  N   G++P+ L NI+SL+ LDL  N L   I           I  +S+L
Sbjct: 568 LPGLEVLFMSDNGFNGSIPFSLGNISSLQWLDLSNNILQGQIPGW--------IGNMSSL 619

Query: 70  NYLVLVS---MLHFPNSFTITMSWR-----------PFRMPIQSHWHLATLYVSKKFFQG 115
            +L L        FP  F+ + + R           P  M       +  L +S     G
Sbjct: 620 EFLDLSGNNFSGRFPPRFSTSSNLRYVYLSRNKLQGPITMTFYDLAEIFALDLSHNNLTG 679

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI-----PKHL 170
            IP  I      L +L LS N  +G IP  +  L+ L  +DLSHN L+G I       H 
Sbjct: 680 TIPEWID-RLSNLRFLLLSYNNLEGEIPIQLSRLDRLTLIDLSHNHLSGNILYWMISTHS 738

Query: 171 AIGCFN----LEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR 226
               +N    L    +S  FTTK  S SY+G  +    GID SCN   GEIPP+IG L+ 
Sbjct: 739 FPQLYNSRDSLSSSQQSFEFTTKNVSLSYRGIIIWYFTGIDFSCNNFTGEIPPEIGNLSM 798

Query: 227 VRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265
           ++ LNLSHNNLTG IP          SLD+SYN L+G+IPP+L EL +L
Sbjct: 799 IKVLNLSHNNLTGPIPPTFWNLKEIESLDLSYNKLDGEIPPRLTELFSL 847

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2131518	1091	AT4G26540 [Arabidopsis thalian	0.947	0.230	0.338	5.5e-23
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.958	0.203	0.312	1.1e-22
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.936	0.228	0.327	3.9e-22
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.924	0.209	0.329	4.4e-22
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.917	0.248	0.346	7e-22
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.973	0.228	0.312	1.8e-21
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.906	0.237	0.318	3.2e-21
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.906	0.192	0.329	9.1e-21
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.879	0.238	0.303	1e-20
TAIR|locus:2092810	1164	BRL3 "BRI1-like 3" [Arabidopsi	0.921	0.210	0.329	1.1e-20

TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 5.5e-23, P = 5.5e-23
 Identities = 93/275 (33%), Positives = 133/275 (48%)

Query:     9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISS--SPLLHLITSIEYL 66
             +L NLQEL +  N + GT+P  L N T L  L++  N +T  I S  S L  L     + 
Sbjct:   332 KLENLQELQLSVNQISGTIPEELTNCTKLTHLEIDNNLITGEIPSLMSNLRSLTMFFAWQ 391

Query:    67 STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHW----HLATLYVSKKFFQGNIPLEIG 122
             + L   +  S+        I +S+      I        +L  L +      G IP +IG
Sbjct:   392 NKLTGNIPQSLSQCRELQAIDLSYNSLSGSIPKEIFGLRNLTKLLLLSNDLSGFIPPDIG 451

Query:   123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182
                  L  L L+ N   GSIPS IG+L +L F+D+S N+L G IP  ++ GC +LE+L  
Sbjct:   452 -NCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDISENRLVGSIPPAIS-GCESLEFLD- 508

Query:   183 SLMFTTKETSYSYKGKPLNK-MYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI 241
                  T   S S  G  L K +  ID S N L   +PP IG LT +  LNL+ N L+G I
Sbjct:   509 ---LHTNSLSGSLLGTTLPKSLKFIDFSDNALSSTLPPGIGLLTELTKLNLAKNRLSGEI 565

Query:   242 PS----------LDVSYNNLNGKIPPQLVELNALA 266
             P           L++  N+ +G+IP +L ++ +LA
Sbjct:   566 PREISTCRSLQLLNLGENDFSGEIPDELGQIPSLA 600

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 87/278 (31%), Positives = 142/278 (51%)

Query:     5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE 64
             S + RL++L  LH+  N+L G +P  L N   + V+DL  NQL+ +I SS     +T++E
Sbjct:   475 SSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSS--FGFLTALE 532

Query:    65 ----YLSTLNYLVLVSMLHFPNSFTITMSWRPFR---MPIQSHWHLATLYVSKKFFQGNI 117
                 Y ++L   +  S+++  N   I  S   F     P+       +  V++  F+G+I
Sbjct:   533 LFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDI 592

Query:   118 PLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNL 177
             PLE+G     L  L L +N+F G IP + G ++ L  LD+S N L+G IP  L + C  L
Sbjct:   593 PLELGKS-TNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL-CKKL 650

Query:   178 EYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNL 237
              ++  +  + +     ++ GK L  +  + LS NK VG +P +I  LT +  L L  N+L
Sbjct:   651 THIDLNNNYLSGVIP-TWLGK-LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSL 708

Query:   238 TGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265
              G IP          +L++  N L+G +P  + +L+ L
Sbjct:   709 NGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKL 746

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 3.9e-22, P = 3.9e-22
 Identities = 90/275 (32%), Positives = 136/275 (49%)

Query:    10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE-YLST 68
             L NLQEL +  N L GT+P  L N T L  L++  NQ++  I   PL+  +TS+  + + 
Sbjct:   336 LPNLQELQLSVNQLSGTIPEELANCTKLTHLEIDNNQISGEIP--PLIGKLTSLTMFFAW 393

Query:    69 LNYLVLV---SMLHFPNSFTITMSWRPFR--MP--IQSHWHLATLYVSKKFFQGNIPLEI 121
              N L  +   S+        I +S+      +P  I    +L  L +   +  G IP +I
Sbjct:   394 QNQLTGIIPESLSQCQELQAIDLSYNNLSGSIPNGIFEIRNLTKLLLLSNYLSGFIPPDI 453

Query:   122 GVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV 181
             G     L  L L+ N   G+IP+ IG+L +L F+D+S N+L G IP  ++ GC +LE+ V
Sbjct:   454 G-NCTNLYRLRLNGNRLAGNIPAEIGNLKNLNFIDISENRLIGNIPPEIS-GCTSLEF-V 510

Query:   182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI 241
             +  + +   T     G     +  IDLS N L G +P  IG LT +  LNL+ N  +G I
Sbjct:   511 D--LHSNGLTG-GLPGTLPKSLQFIDLSDNSLTGSLPTGIGSLTELTKLNLAKNRFSGEI 567

Query:   242 PS----------LDVSYNNLNGKIPPQLVELNALA 266
             P           L++  N   G+IP +L  + +LA
Sbjct:   568 PREISSCRSLQLLNLGDNGFTGEIPNELGRIPSLA 602

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 90/273 (32%), Positives = 135/273 (49%)

Query:    12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-TLN 70
             +L +L +  N L G +P  L N+  L+ L +Y N+LT +I SS  L  +T + +L  + N
Sbjct:   265 SLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSS--LFRLTQLTHLGLSEN 322

Query:    71 YLV--LVSMLHFPNSFTI-TMSWRPF--RMP--IQSHWHLATLYVSKKFFQGNIPLEIGV 123
             +LV  +   + F  S  + T+    F    P  I +  +L  L V      G +P ++G+
Sbjct:   323 HLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL 382

Query:   124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL-VE 182
                 L  L+   N   G IPSSI +   LK LDLSHNQ+TGEIP+    G  NL ++ + 
Sbjct:   383 -LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR--GFGRMNLTFISIG 439

Query:   183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242
                FT +     +    L  +   D   N L G + P IGKL ++R L +S+N+LTG IP
Sbjct:   440 RNHFTGEIPDDIFNCSNLETLSVAD---NNLTGTLKPLIGKLQKLRILQVSYNSLTGPIP 496

Query:   243 -------SLDVSY---NNLNGKIPPQLVELNAL 265
                     L++ Y   N   G+IP ++  L  L
Sbjct:   497 REIGNLKDLNILYLHSNGFTGRIPREMSNLTLL 529

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 91/263 (34%), Positives = 136/263 (51%)

Query:     1 MNSISGLFRL---RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSS--P 55
             +NS S LFRL   R L  L +  ND  G +P  LE +++L  LDL  N  +  I SS   
Sbjct:    99 LNSNSSLFRLPQLRFLTTLDLSNNDFIGQIPSSLETLSNLTTLDLSRNHFSGRIPSSIGN 158

Query:    56 LLHLITSIEYLSTLNYLVLV-SMLHFPNSFT-ITMSWRPF--RMP--IQSHWHLATLYVS 109
             L HLI  +++ S  N+   + S L + +  T   +S+  F  R+P  I +  +L TL +S
Sbjct:   159 LSHLIF-VDF-SHNNFSGQIPSSLGYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLS 216

Query:   110 KKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH 169
             +  F G +P  +G  F  L  L L  N F G IPSS+G+L+ L  +DL  N   GEIP  
Sbjct:   217 RNSFFGELPSSLGSLF-HLTDLILDTNHFVGKIPSSLGNLSHLTSIDLHKNNFVGEIPFS 275

Query:   170 LA-IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVR 228
             L  + C     L ++ +     +S+   G  LN++  +++  NKL G  P  +  L ++ 
Sbjct:   276 LGNLSCLTSFILSDNNIVGEIPSSF---GN-LNQLDILNVKSNKLSGSFPIALLNLRKLS 331

Query:   229 ALNLSHNNLTGVIPSLDVSYNNL 251
              L+L +N LTG +PS   S +NL
Sbjct:   332 TLSLFNNRLTGTLPSNMSSLSNL 354

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 90/288 (31%), Positives = 136/288 (47%)

Query:     1 MNSISGLF-----RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSP 55
             MN  SG        L NLQEL + +N++ G++P  L N T L    +  NQ++  I   P
Sbjct:   332 MNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIP--P 389

Query:    56 LLHLITSIE-YLSTLNYL---VLVSMLHFPN--SFTITMSWRPFRMP--IQSHWHLATLY 107
              + L+  +  +L   N L   +   +    N  +  ++ ++    +P  +    +L  L 
Sbjct:   390 EIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLL 449

Query:   108 VSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167
             +      G IPLEIG     L+ L L  N   G IP  IG L +L FLDLS N L+G +P
Sbjct:   450 LISNAISGVIPLEIG-NCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVP 508

Query:   168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRV 227
               ++  C  L+ L  +L   T +         L K+  +D+S N L G+IP  +G L  +
Sbjct:   509 LEIS-NCRQLQML--NLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISL 565

Query:   228 RALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQLVELNAL 265
               L LS N+  G IPS          LD+S NN++G IP +L ++  L
Sbjct:   566 NRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDL 613

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 87/273 (31%), Positives = 133/273 (48%)

Query:     9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISS-----SPLLHLITSI 63
             +L+NLQ L++  N L G++P  + ++  L+VL+L+ N L+  + S     SPL  L  S 
Sbjct:   306 KLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSS 365

Query:    64 -----EYLSTL-NYLVLVSMLHFPNSFTITMSWRPFRMPI-QSHWHLATLYVSKKFFQGN 116
                  E  STL N   L  ++ F N+FT  +   P  +   QS   L  + +      G+
Sbjct:   366 NSFSGEIPSTLCNKGNLTKLILFNNTFTGQI---PATLSTCQS---LVRVRMQNNLLNGS 419

Query:   117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176
             IP+  G    +L  L L+ N   G IP  I D  SL F+D S NQ+   +P  + +   N
Sbjct:   420 IPIGFGK-LEKLQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTI-LSIHN 477

Query:   177 LEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN 236
             L+  + +  F + E    ++  P   +  +DLS N L G IP  I    ++ +LNL +NN
Sbjct:   478 LQAFLVADNFISGEVPDQFQDCP--SLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNN 535

Query:   237 LTGVIPS----------LDVSYNNLNGKIPPQL 259
             LTG IP           LD+S N+L G +P  +
Sbjct:   536 LTGEIPRQITTMSALAVLDLSNNSLTGVLPESI 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 9.1e-21, P = 9.1e-21
 Identities = 86/261 (32%), Positives = 131/261 (50%)

Query:     3 SISGLF-RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSS--PLLHL 59
             SIS  F R  NL  L + +N+L G +P  L N+TSL+ L L+ NQLT  I S    L+++
Sbjct:    86 SISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNI 145

Query:    60 ----ITSIEYLS----TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKK 111
                 I   E +     TL  LV + ML    S  +T    P    +     + +L +   
Sbjct:   146 RSLRIGDNELVGDIPETLGNLVNLQMLALA-SCRLT---GPIPSQLGRLVRVQSLILQDN 201

Query:   112 FFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171
             + +G IP E+G     L     + N  +G+IP+ +G L +L+ L+L++N LTGEIP  L 
Sbjct:   202 YLEGPIPAELG-NCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLG 260

Query:   172 IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN 231
                  L+YL  SLM    +         L  +  +DLS N L GEIP +   ++++  L 
Sbjct:   261 -EMSQLQYL--SLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLV 317

Query:   232 LSHNNLTGVIPSLDVSYNNLN 252
             L++N+L+G +P   +  NN N
Sbjct:   318 LANNHLSGSLPK-SICSNNTN 337

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 80/264 (30%), Positives = 124/264 (46%)

Query:    12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNY 71
             NL ++H+  N + G++P  + N+ +L +L+L     + N+ S P+   +  +  L  + Y
Sbjct:   298 NLVQIHLDQNRIHGSIPPEISNLLNLTLLNL-----SSNLLSGPIPRELCKLSKLERV-Y 351

Query:    72 LVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYL 131
             L   S  H      + +   P          L  L VS+    G+IP   G    +L  L
Sbjct:   352 L---SNNHLTGEIPMELGDIP---------RLGLLDVSRNNLSGSIPDSFG-NLSQLRRL 398

Query:   132 NLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET 191
              L  N   G++P S+G   +L+ LDLSHN LTG IP  +     NL+ L  +L       
Sbjct:   399 LLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLK-LYLNLSSNHLSG 457

Query:   192 SYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS-------- 243
                 +   ++ +  +DLS N+L G+IPPQ+G    +  LNLS N  +  +PS        
Sbjct:   458 PIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYL 517

Query:   244 --LDVSYNNLNGKIPPQLVELNAL 265
               LDVS+N L G IPP   + + L
Sbjct:   518 KELDVSFNRLTGAIPPSFQQSSTL 541

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2092810 BRL3 "BRI1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 89/270 (32%), Positives = 135/270 (50%)

Query:    11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL--ITSIEYL-- 66
             R L+ L +  N L G LP    +  SL+ L+L  N+L+ +  S+ +  L  IT++ YL  
Sbjct:   302 RTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNL-YLPF 360

Query:    67 STLNYLVLVSMLHFPNSFTITMSWRPF--RMP-----IQSHWHLATLYVSKKFFQGNIPL 119
             + ++  V +S+ +  N   + +S   F   +P     +QS   L  L ++  +  G +P+
Sbjct:   361 NNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPV 420

Query:   120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
             E+G     L  ++LS N   G IP  I  L  L  L +  N LTG IP+ + +   NLE 
Sbjct:   421 ELGKC-KSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLET 479

Query:   180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
             L+ +    T     S   K  N ++ I LS N L GEIP  IGKL ++  L L +N+LTG
Sbjct:   480 LILNNNLLTGSLPESIS-KCTNMLW-ISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTG 537

Query:   240 VIPS----------LDVSYNNLNGKIPPQL 259
              IPS          LD++ NNL G +P +L
Sbjct:   538 NIPSELGNCKNLIWLDLNSNNLTGNLPGEL 567

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181071 annotation not avaliable (645 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.1 bits (239), Expect = 2e-22
 Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 33/239 (13%)

Query: 37  LKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMP 96
           ++ ++L  NQL+  I    +    +S+ YL+  N           N+FT ++       P
Sbjct: 95  IQTINLSNNQLSGPIPDD-IFTTSSSLRYLNLSN-----------NNFTGSI-------P 135

Query: 97  IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLD 156
             S  +L TL +S     G IP +IG  F  L  L+L  N   G IP+S+ +L SL+FL 
Sbjct: 136 RGSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194

Query: 157 LSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE 216
           L+ NQL G+IP+ L     +L+++       + E  Y   G  L  +  +DL  N L G 
Sbjct: 195 LASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGG--LTSLNHLDLVYNNLTGP 251

Query: 217 IPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265
           IP  +G L  ++ L L  N L+G IP          SLD+S N+L+G+IP  +++L  L
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.0 bits (231), Expect = 2e-21
 Identities = 87/273 (31%), Positives = 122/273 (44%), Gaps = 45/273 (16%)

Query: 6   GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNI-----SSSPLLHLI 60
            L  L  LQ L + +N   G +P  L    +L VLDL  N LT  I     SS  L  LI
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 61  T-----------------------------SIEYLSTLNYLVLVSMLHFP-NSFTITMSW 90
                                         S E  S    L LV  L    N+    ++ 
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 91  RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLN 150
           R + MP      L  L +++  F G +P   G    RL  L+LSRN+F G++P  +G L+
Sbjct: 447 RKWDMP-----SLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLS 499

Query: 151 SLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSC 210
            L  L LS N+L+GEIP  L+  C  L  L  S    + +   S+   P+  +  +DLS 
Sbjct: 500 ELMQLKLSENKLSGEIPDELS-SCKKLVSLDLSHNQLSGQIPASFSEMPV--LSQLDLSQ 556

Query: 211 NKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS 243
           N+L GEIP  +G +  +  +N+SHN+L G +PS
Sbjct: 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.9 bits (223), Expect = 2e-20
 Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 22/184 (11%)

Query: 93  FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSL 152
           FR+P     ++ T+ +S     G IP +I      L YLNLS N F GSIP   G + +L
Sbjct: 90  FRLP-----YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142

Query: 153 KFLDLSHNQLTGEIPKHLAIGCF-NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCN 211
           + LDLS+N L+GEIP    IG F +L+ L         +   S     L  +  + L+ N
Sbjct: 143 ETLDLSNNMLSGEIP--NDIGSFSSLKVLDLGGNVLVGKIPNSLTN--LTSLEFLTLASN 198

Query: 212 KLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQLVE 261
           +LVG+IP ++G++  ++ + L +NNL+G IP           LD+ YNNL G IP  L  
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 262 LNAL 265
           L  L
Sbjct: 259 LKNL 262

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.0 bits (218), Expect = 1e-19
 Identities = 87/292 (29%), Positives = 127/292 (43%), Gaps = 78/292 (26%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYL 66
           L ++++L+ +++G N+L G +P+ +  +TSL  LDL  N LT  I SS        +  L
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--------LGNL 259

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIP-------- 118
             L YL L     + N  +      P    I S   L +L +S     G IP        
Sbjct: 260 KNLQYLFL-----YQNKLS-----GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Query: 119 LEIGVYF---------------PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163
           LEI   F               PRL  L L  N+F G IP ++G  N+L  LDLS N LT
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Query: 164 GEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGK 223
           GEIP+ L     +   L + ++F+                       N L GEIP  +G 
Sbjct: 370 GEIPEGLC----SSGNLFKLILFS-----------------------NSLEGEIPKSLGA 402

Query: 224 LTRVRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQLVELNAL 265
              +R + L  N+ +G +PS          LD+S NNL G+I  +  ++ +L
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 82/262 (31%), Positives = 121/262 (46%), Gaps = 36/262 (13%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
           + NL+ L +  N L G +P  + + +SLKVLDL  N L   I +        S+  L++L
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN--------SLTNLTSL 190

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
            +L L S     N     +     +M       L  +Y+      G IP EIG     L 
Sbjct: 191 EFLTLAS-----NQLVGQIPRELGQMK-----SLKWIYLGYNNLSGEIPYEIG-GLTSLN 239

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTK 189
           +L+L  N   G IPSS+G+L +L++L L  N+L+G IP  +    F+L+ L+ SL  +  
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI----FSLQKLI-SLDLSDN 294

Query: 190 ETSYSYKG--KPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS---- 243
             S         L  +  + L  N   G+IP  +  L R++ L L  N  +G IP     
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 244 ------LDVSYNNLNGKIPPQL 259
                 LD+S NNL G+IP  L
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 87.2 bits (216), Expect = 2e-19
 Identities = 91/281 (32%), Positives = 119/281 (42%), Gaps = 66/281 (23%)

Query: 12  NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLT----RNISSSPLLHLI------- 60
           +L+ L +G N L G +P  L N+TSL+ L L  NQL     R +     L  I       
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 61  -----TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
                  I  L++LN+L LV      N+ T                             G
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVY-----NNLT-----------------------------G 250

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF 175
            IP  +G     L YL L +N+  G IP SI  L  L  LDLS N L+GEIP+ L I   
Sbjct: 251 PIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQ 308

Query: 176 NLEYLVESLMFTTKETSYSYKG-KPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
           NLE L    +F+   T         L ++  + L  NK  GEIP  +GK   +  L+LS 
Sbjct: 309 NLEIL---HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 235 NNLTGVIPS----------LDVSYNNLNGKIPPQLVELNAL 265
           NNLTG IP           L +  N+L G+IP  L    +L
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 14/151 (9%)

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
             R++ ++LS     G I S+I  L  ++ ++LS+NQL+G IP  +     +L Y    L
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY----L 123

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS- 243
             +    + S     +  +  +DLS N L GEIP  IG  + ++ L+L  N L G IP+ 
Sbjct: 124 NLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 244 ---------LDVSYNNLNGKIPPQLVELNAL 265
                    L ++ N L G+IP +L ++ +L
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 9e-12
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 102 HLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161
           HL ++ +S    +GNIP  +G     L  L+LS N F+GSIP S+G L SL+ L+L+ N 
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 162 LTGEIPKHL 170
           L+G +P  L
Sbjct: 502 LSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 10/71 (14%)

Query: 205 GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGK 254
           G+ L    L G IP  I KL  ++++NLS N++ G IP           LD+SYN+ NG 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 255 IPPQLVELNAL 265
           IP  L +L +L
Sbjct: 482 IPESLGQLTSL 492

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 29/114 (25%)

Query: 131 LNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF-NLEYLVESLMFTTK 189
           L L      G IP+ I  L  L+ ++LS N + G IP   ++G   +LE L         
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP--PSLGSITSLEVL--------- 471

Query: 190 ETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS 243
                            DLS N   G IP  +G+LT +R LNL+ N+L+G +P+
Sbjct: 472 -----------------DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 10/70 (14%)

Query: 200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDVSYN 249
           L  +  I+LS N + G IPP +G +T +  L+LS+N+  G IP           L+++ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 250 NLNGKIPPQL 259
           +L+G++P  L
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
           N IS   +LR+LQ +++  N +RG +P  L +ITSL+VLDL  N    +I  S  L  +T
Sbjct: 436 NDIS---KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES--LGQLT 490

Query: 62  SIEYLSTLN 70
           S+  L+ LN
Sbjct: 491 SLRILN-LN 498

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162
           P L  L+LS N      P +   L SL+ LDLS N L
Sbjct: 24  PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 23/148 (15%)

Query: 2   NSISG----LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLL 57
           N   G     F  + L+ L +  N   G +P  L +++ L  L L  N+L+  I      
Sbjct: 462 NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE--- 518

Query: 58  HLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNI 117
             ++S + L +L+          P SF+         MP+     L+ L +S+    G I
Sbjct: 519 --LSSCKKLVSLDLSHNQLSGQIPASFS--------EMPV-----LSQLDLSQNQLSGEI 563

Query: 118 PLEIGVYFPRLMYLNLSRNEFDGSIPSS 145
           P  +G     L+ +N+S N   GS+PS+
Sbjct: 564 PKNLG-NVESLVQVNISHNHLHGSLPST 590

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.67
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.55
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.51
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
PLN03150	623	hypothetical protein; Provisional	98.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.9
PLN03150	623	hypothetical protein; Provisional	98.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.59
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.38
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.24
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.23
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.0
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.98
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.75
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.34
PRK15386	426	type III secretion protein GogB; Provisional	97.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.87
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.62
KOG4341	483	consensus F-box protein containing LRR [General fu	96.43
KOG4341	483	consensus F-box protein containing LRR [General fu	96.38
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.26
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.15
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.13
smart00370	26	LRR Leucine-rich repeats, outliers.	93.73
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.73
KOG4308	478	consensus LRR-containing protein [Function unknown	93.24
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.72
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.69
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.25
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.07

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=1.5e-25  Score=213.60  Aligned_cols=171  Identities=34%  Similarity=0.422  Sum_probs=92.1

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcc
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSF   84 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~   84 (266)
                      .+++|++|++++|.+.+..|..|+++++|++|++++|.+++.+|. .+..+ ++|++|++++|..    +..+..++++.
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhC-cCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            456666666666666666666666666666666666666655555 55555 6666666666652    23333344443


Q ss_pred             eecccC----cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           85 TITMSW----RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        85 ~~~~~~----~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                      ....+.    ..+|..+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            322222    134445555555666666665555555544443 555555555555555445555555555555555555


Q ss_pred             eeeecCCccccccccchhHHHhh
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVES  183 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~  183 (266)
                      ++.+.+|..+ ..+.+++.+++.
T Consensus       295 ~l~~~~p~~~-~~l~~L~~L~l~  316 (968)
T PLN00113        295 SLSGEIPELV-IQLQNLEILHLF  316 (968)
T ss_pred             eeccCCChhH-cCCCCCcEEECC
Confidence            5554443322 334444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=2.6e-25  Score=211.94  Aligned_cols=222  Identities=27%  Similarity=0.371  Sum_probs=114.3

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcc
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSF   84 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~   84 (266)
                      ++++|++|++++|.+.+..|.  ..+++|++|++++|.+++.+|. .+..+ ++|++|++++|..    +..+..++.+.
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~  191 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSF-SSLKVLDLGGNVLVGKIPNSLTNLTSLE  191 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcC-CCCCEEECccCcccccCChhhhhCcCCC
Confidence            566666666666666555443  3456666666666666555555 55555 6666666666552    22233334433


Q ss_pred             eecccC----cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           85 TITMSW----RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        85 ~~~~~~----~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                      .++.+.    ..+|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence            332222    224555566666666666666666555555544 566666666666665555666666666666666666


Q ss_pred             eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                      ++.+.+|..+ ..+.+++.++++.+.....  .+.....+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++
T Consensus       271 ~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  345 (968)
T PLN00113        271 KLSGPIPPSI-FSLQKLISLDLSDNSLSGE--IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS  345 (968)
T ss_pred             eeeccCchhH-hhccCcCEEECcCCeeccC--CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence            6654444443 3445555555544432211  1111122344444444444444334444444444444444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=5e-24  Score=181.62  Aligned_cols=251  Identities=20%  Similarity=0.162  Sum_probs=195.2

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh-------hcc
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV-------SML   78 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~-------~~~   78 (266)
                      .|.+-.++++|++++|+|+.....+|+++.+|.+|.|+.|+|+ .+|...|.++ +.|+.|++-+|.+..       ++.
T Consensus       168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L-~~L~~LdLnrN~irive~ltFqgL~  245 (873)
T KOG4194|consen  168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRL-PKLESLDLNRNRIRIVEGLTFQGLP  245 (873)
T ss_pred             CCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhc-chhhhhhccccceeeehhhhhcCch
Confidence            4555567888888888888777888888888888888888887 6776355556 888888888888211       222


Q ss_pred             CCCCcceecccCccccc-CcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 048681           79 HFPNSFTITMSWRPFRM-PIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDL  157 (266)
Q Consensus        79 ~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  157 (266)
                      ++.++-...++...+.+ .|..+.++++|++..|+++ .+..+..-++++|+.|++++|.+....++.+..+++|+.|++
T Consensus       246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL  324 (873)
T KOG4194|consen  246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL  324 (873)
T ss_pred             hhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence            22232223444455554 4778899999999999998 566554444999999999999999888999999999999999


Q ss_pred             cCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC---ccccccccCCeeeccc
Q 048681          158 SHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP---PQIGKLTRVRALNLSH  234 (266)
Q Consensus       158 ~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~  234 (266)
                      ++|+++ ..++..+..+..+..|.+..+....+..-.+.  .+++|++|||..|.+.+.+.   ..|.++++|+.|.+.|
T Consensus       325 s~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~--~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g  401 (873)
T KOG4194|consen  325 SSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV--GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG  401 (873)
T ss_pred             cccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHH--HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence            999998 67777778888888888877766555544443  38999999999999886543   3578899999999999


Q ss_pred             ccccccC----------CeEEeeCCeeeecCChhhhhc
Q 048681          235 NNLTGVI----------PSLDVSYNNLNGKIPPQLVEL  262 (266)
Q Consensus       235 n~l~~~~----------~~l~l~~n~i~~~~p~~~~~~  262 (266)
                      |++...+          +.|||-+|.|..+=|..|..+
T Consensus       402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             ceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            9998653          389999999998888888766

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=6.4e-23  Score=174.93  Aligned_cols=238  Identities=23%  Similarity=0.242  Sum_probs=157.6

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS   83 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~   83 (266)
                      ++.|.++++|++++|.+|.++ .+|.-.....+|+.|+|.+|.|+..-.+ .+..+ ++|+.||++.|.+          
T Consensus        95 ~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l-~alrslDLSrN~i----------  161 (873)
T KOG4194|consen   95 FEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSE-ELSAL-PALRSLDLSRNLI----------  161 (873)
T ss_pred             HHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHH-HHHhH-hhhhhhhhhhchh----------
Confidence            344556666666666666665 4454333444566666666666532222 44444 6666666666653          


Q ss_pred             ceecccCccccc-CcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681           84 FTITMSWRPFRM-PIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        84 ~~~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                             .++|. ++.+-.++++|++++|+++ .+..+-++.+.+|..|.|+.|.++...+..|..+++|+.|++..|++
T Consensus       162 -------s~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  162 -------SEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             -------hcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence                   22332 3444467889999999997 67777777788899999999999833344566689999999999988


Q ss_pred             eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc--
Q 048681          163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV--  240 (266)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--  240 (266)
                      . .+....|+++.+++.+.+.++....+..-.+.+  +.++++|+|..|.+..--..++.+++.|+.|+++.|-|...  
T Consensus       234 r-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~--l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  234 R-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG--LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             e-eehhhhhcCchhhhhhhhhhcCcccccCcceee--ecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            7 666667788889998888888877666554444  67777777777777644445666777777777777766633  


Q ss_pred             --------CCeEEeeCCeeeecCChhhhhcccC
Q 048681          241 --------IPSLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       241 --------~~~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                              +.+|+|++|+|++--|.+|..+.+|
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHh
Confidence                    3377777777775555556555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=8.6e-21  Score=163.56  Aligned_cols=248  Identities=25%  Similarity=0.327  Sum_probs=194.9

Q ss_pred             CCCCCcEEECCCccCc-cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhh---ccCCCCcc
Q 048681            9 RLRNLQELHMGANDLR-GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVS---MLHFPNSF   84 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~---~~~~~~~~   84 (266)
                      =+|-.+-+++++|.++ +..|.....+++++.|.|....+. .+|+ .+..+ ++|++|.+.+|+...-   +..+|.+.
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRL-QKLEHLSMAHNQLISVHGELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHH-hhhhhhhhhhhhhHhhhhhhccchhhH
Confidence            3566778899999999 679999999999999999999887 6888 88888 9999999999994333   33344433


Q ss_pred             e---eccc--CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCc-cccCCCCCCEEEcc
Q 048681           85 T---ITMS--WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPS-SIGDLNSLKFLDLS  158 (266)
Q Consensus        85 ~---~~~~--~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~  158 (266)
                      .   .+++  -..+|.-+.++..|+.|++++|++. .+|..+.. .+++-+|++++|+|. ++|. .+..+..|-+|+++
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccc-cCCchHHHhhHhHhhhccc
Confidence            2   2222  2458888999999999999999998 88988876 789999999999998 5664 55688999999999


Q ss_pred             CCeeeecCCccccccccchhHHHhhhcccc-----------------------cccccCCCCcCCCCccEEEccCCcccc
Q 048681          159 HNQLTGEIPKHLAIGCFNLEYLVESLMFTT-----------------------KETSYSYKGKPLNKMYGIDLSCNKLVG  215 (266)
Q Consensus       159 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~L~~L~L~~n~i~~  215 (266)
                      +|++. .+|+++ ..+..++.|+++.+-.+                       .....+.....+.+|..+|++.|.+. 
T Consensus       159 ~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  159 NNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             cchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence            99998 677766 45666666665544221                       01112222234678888999999998 


Q ss_pred             cCCccccccccCCeeeccccccccc---------CCeEEeeCCeeeecCChhhhhcccCC
Q 048681          216 EIPPQIGKLTRVRALNLSHNNLTGV---------IPSLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       216 ~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      .+|+.+-.+++|+.|+|++|+|+..         ++.|+++.|.++ .+|+++++++.|+
T Consensus       236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            8999999999999999999999955         448999999998 8999999987663

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.76  E-value=1.2e-19  Score=156.55  Aligned_cols=240  Identities=23%  Similarity=0.261  Sum_probs=170.0

Q ss_pred             CCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhc--
Q 048681            3 SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSM--   77 (266)
Q Consensus         3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~--   77 (266)
                      .|+.+.++..|+.|++|+|.+. ..|..+...+++-.|+|++|+|. .||. +++..++.|-.||+++|.   .+..+  
T Consensus        95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn-~lfinLtDLLfLDLS~NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPN-SLFINLTDLLFLDLSNNRLEMLPPQIRR  171 (1255)
T ss_pred             CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCc-hHHHhhHhHhhhccccchhhhcCHHHHH
Confidence            4778889999999999999988 78888888888888888888886 6776 444333777777777766   11111  


Q ss_pred             ----------------------cCCCCcceec-----ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcE
Q 048681           78 ----------------------LHFPNSFTIT-----MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMY  130 (266)
Q Consensus        78 ----------------------~~~~~~~~~~-----~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  130 (266)
                                            +++..+-.+.     -....+|.++..+.+|..++++.|.+. .+|+-+.. +++|..
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~Lrr  249 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRR  249 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhhe
Confidence                                  1111111111     122457888999999999999999987 88887776 889999


Q ss_pred             EEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccC
Q 048681          131 LNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSC  210 (266)
Q Consensus       131 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  210 (266)
                      |++++|.++ .+......+.+|+.|+++.|+++ .+|..+. .++.++.|....+. .+....+-+.+.+..|+++..++
T Consensus       250 LNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aan  325 (1255)
T KOG0444|consen  250 LNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAAN  325 (1255)
T ss_pred             eccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhc
Confidence            999999997 66667788889999999999998 6777764 34455555544332 12223333444567777888888


Q ss_pred             CcccccCCccccccccCCeeecccccccccCC---------eEEeeCCeee
Q 048681          211 NKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---------SLDVSYNNLN  252 (266)
Q Consensus       211 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~l~l~~n~i~  252 (266)
                      |.+. .+|+.+..|+.|+.|.|++|++--.|+         .||+..|+-.
T Consensus       326 N~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  326 NKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence            8776 788888888888888888887553322         6777777644

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=2.5e-20  Score=152.88  Aligned_cols=236  Identities=22%  Similarity=0.292  Sum_probs=158.0

Q ss_pred             CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhccCCCCcceec-
Q 048681           12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSMLHFPNSFTIT-   87 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~~~~~~~~~~~-   87 (266)
                      .|..+.++.|.+.. .-..+.++..|.+|++++|.+. ..|. ++.++ .+++.+++++|.   .++.+.....++..+ 
T Consensus        46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l-~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPA-AIGEL-EALKSLNVSHNKLSELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCH-HHHHH-HHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence            34556677776663 3344566777777777777766 4565 67776 777777777776   344445555444433 


Q ss_pred             --ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681           88 --MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE  165 (266)
Q Consensus        88 --~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  165 (266)
                        ....+++++++++..+..++..+|+++ .+|+.++. +.++..+++.+|.+.. .|+..-.++.|++++...|-++ .
T Consensus       122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  122 SSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             cccceeecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-c
Confidence              334557778888888888888888887 77777765 6678888888888763 3443334888888888888876 6


Q ss_pred             CCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccc-cccccCCeeecccccccccCC--
Q 048681          166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIP--  242 (266)
Q Consensus       166 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~--  242 (266)
                      +|+.+.    .+..++..+...+++..++ .+..+..|.++.++.|.|. .+|... ..++++..||+..|++++.|.  
T Consensus       198 lP~~lg----~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~  271 (565)
T KOG0472|consen  198 LPPELG----GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEI  271 (565)
T ss_pred             CChhhc----chhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHH
Confidence            776663    3444444444455555555 3334777888888888776 555544 467778888888888876644  


Q ss_pred             -------eEEeeCCeeeecCChhhhhc
Q 048681          243 -------SLDVSYNNLNGKIPPQLVEL  262 (266)
Q Consensus       243 -------~l~l~~n~i~~~~p~~~~~~  262 (266)
                             +||++.|.|+ .+|.+++++
T Consensus       272 clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  272 CLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             HHhhhhhhhcccCCccc-cCCcccccc
Confidence                   6788888887 678777776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.72  E-value=1.8e-20  Score=153.65  Aligned_cols=234  Identities=24%  Similarity=0.275  Sum_probs=150.6

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhccCCCC
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSMLHFPN   82 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~~~~~~   82 (266)
                      .+.++..|+.+.+.+|.+. ..|.+++.+..++.++++.|++. .+|+ .+..+ ..+.+++.+.|.   .+.++..+..
T Consensus        63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~-~~l~~l~~s~n~~~el~~~i~~~~~  138 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSL-ISLVKLDCSSNELKELPDSIGRLLD  138 (565)
T ss_pred             hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhh-hhhhhhhccccceeecCchHHHHhh
Confidence            3455666666666666666 55566666666666666666665 4555 55555 566666666655   2222222211


Q ss_pred             c---ceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681           83 S---FTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH  159 (266)
Q Consensus        83 ~---~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  159 (266)
                      +   .........+|..+..+.++..+++.+|++. .+|+.... ++.|++++...|.+. ++|+.++.+.+|..|++..
T Consensus       139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRR  215 (565)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhh
Confidence            1   1233344556667777777777777777776 55555554 677777777777665 6777777777777777777


Q ss_pred             CeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccc
Q 048681          160 NQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG  239 (266)
Q Consensus       160 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  239 (266)
                      |++. +.|  -+.+|..++.+.+..+...-...  .....++++.+||+.+|.++ +.|..+.-+++|.+||+++|.+++
T Consensus       216 Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpa--e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  216 NKIR-FLP--EFPGCSLLKELHVGENQIEMLPA--EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             cccc-cCC--CCCccHHHHHHHhcccHHHhhHH--HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence            7776 565  23456555555444333222211  11124788999999999998 789888888999999999999998


Q ss_pred             cCC--------eEEeeCCeee
Q 048681          240 VIP--------SLDVSYNNLN  252 (266)
Q Consensus       240 ~~~--------~l~l~~n~i~  252 (266)
                      .++        .|.+.+|+++
T Consensus       290 Lp~sLgnlhL~~L~leGNPlr  310 (565)
T KOG0472|consen  290 LPYSLGNLHLKFLALEGNPLR  310 (565)
T ss_pred             CCcccccceeeehhhcCCchH
Confidence            877        6778888876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=1.7e-19  Score=132.24  Aligned_cols=160  Identities=29%  Similarity=0.438  Sum_probs=136.3

Q ss_pred             hcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCc
Q 048681           32 ENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKK  111 (266)
Q Consensus        32 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n  111 (266)
                      .++.+++.|.+++|.++ .+|. .+..+ .+|+.|++++|++                 +++|.+++++++|+.|+++-|
T Consensus        30 f~~s~ITrLtLSHNKl~-~vpp-nia~l-~nlevln~~nnqi-----------------e~lp~~issl~klr~lnvgmn   89 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPP-NIAEL-KNLEVLNLSNNQI-----------------EELPTSISSLPKLRILNVGMN   89 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCC-cHHHh-hhhhhhhcccchh-----------------hhcChhhhhchhhhheecchh
Confidence            34677777888888887 4555 67777 7888888888876                 667788889999999999999


Q ss_pred             cccccCCccccccCCCCcEEEccccccc-ccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccc
Q 048681          112 FFQGNIPLEIGVYFPRLMYLNLSRNEFD-GSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKE  190 (266)
Q Consensus       112 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  190 (266)
                      ++. .+|.++++ ++.|++|++.+|.+. ...|..|..+..|+-|.+++|.++ .+|..+.                   
T Consensus        90 rl~-~lprgfgs-~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg-------------------  147 (264)
T KOG0617|consen   90 RLN-ILPRGFGS-FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG-------------------  147 (264)
T ss_pred             hhh-cCccccCC-CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-------------------
Confidence            997 88999887 999999999999996 357888889999999999999998 7887774                   


Q ss_pred             cccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          191 TSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       191 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                              .+++|+.|.+.+|.+- ..|..++.+.+|++|.+++|+++-.+|
T Consensus       148 --------~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  148 --------KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             --------hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence                    3789999999999987 789999999999999999999997766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.69  E-value=2.6e-16  Score=143.33  Aligned_cols=217  Identities=24%  Similarity=0.229  Sum_probs=118.8

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh---hccCCCCcceec
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV---SMLHFPNSFTIT   87 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~---~~~~~~~~~~~~   87 (266)
                      ++|+.|++++|.++. +|.   ..++|++|++++|+++ .+|.     .+++|+.|++++|....   ....+..+....
T Consensus       222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~-----lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~  291 (788)
T PRK15387        222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG  291 (788)
T ss_pred             cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC-----cccccceeeccCCchhhhhhchhhcCEEECcC
Confidence            367777777777773 343   2467788888888777 3443     23677777777776221   111111111122


Q ss_pred             ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC
Q 048681           88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP  167 (266)
Q Consensus        88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  167 (266)
                      +.+..+|.   ..++|++|++++|.++ .+|..    ...|+.|++++|.+. .+|..   ..+|+.|++++|+++ .+|
T Consensus       292 N~Lt~LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP  358 (788)
T PRK15387        292 NQLTSLPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-SLP  358 (788)
T ss_pred             Cccccccc---cccccceeECCCCccc-cCCCC----cccccccccccCccc-ccccc---ccccceEecCCCccC-CCC
Confidence            23333443   2357888888888887 45542    235667777777775 34431   246788888888887 455


Q ss_pred             ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-----
Q 048681          168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-----  242 (266)
Q Consensus       168 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----  242 (266)
                      ...    .++..|++..+....++.      .+..|+.|++++|.++ .+|..   .++|+.|++++|.+++.+.     
T Consensus       359 ~lp----~~L~~L~Ls~N~L~~LP~------l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssIP~l~~~L  424 (788)
T PRK15387        359 TLP----SELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSLPMLPSGL  424 (788)
T ss_pred             CCC----cccceehhhccccccCcc------cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCCCcchhhh
Confidence            322    244445544443332221      1245666666666666 34432   2356666666666654322     


Q ss_pred             -eEEeeCCeeeecCChhhhhcccC
Q 048681          243 -SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       243 -~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                       .|++++|.|+ .+|.++.++..|
T Consensus       425 ~~L~Ls~NqLt-~LP~sl~~L~~L  447 (788)
T PRK15387        425 LSLSVYRNQLT-RLPESLIHLSSE  447 (788)
T ss_pred             hhhhhccCccc-ccChHHhhccCC
Confidence             4555555555 455555554443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.67  E-value=1.1e-18  Score=156.04  Aligned_cols=162  Identities=26%  Similarity=0.356  Sum_probs=103.5

Q ss_pred             cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccc-c
Q 048681           97 IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC-F  175 (266)
Q Consensus        97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~  175 (266)
                      ++.+.+|+.+.+..|+++ .+|..++. ..+|+.+...+|.+. .+|......++|+.|++..|++. ..|+.++... .
T Consensus       260 i~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  260 IGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNA  335 (1081)
T ss_pred             HHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhH
Confidence            333334444444444442 33333333 334444444444443 45666667788888888888887 5555443222 1


Q ss_pred             chhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc----------CCeEE
Q 048681          176 NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV----------IPSLD  245 (266)
Q Consensus       176 ~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~l~  245 (266)
                      .+..+..+.+.....+  .......+.|+.|.+.+|.+++.+-+.+.++++||.|+|++|++...          +++|+
T Consensus       336 ~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~  413 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN  413 (1081)
T ss_pred             HHHHHhhhhccccccc--cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence            2333333333333333  22223478899999999999988777789999999999999998844          33999


Q ss_pred             eeCCeeeecCChhhhhcccC
Q 048681          246 VSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       246 l~~n~i~~~~p~~~~~~~~l  265 (266)
                      ||+|+++ .+|+++.++..|
T Consensus       414 LSGNkL~-~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  414 LSGNKLT-TLPDTVANLGRL  432 (1081)
T ss_pred             cccchhh-hhhHHHHhhhhh
Confidence            9999999 899999988876

>PLN03210 Resistant to P

Probab=99.66  E-value=2e-15  Score=145.73  Aligned_cols=248  Identities=21%  Similarity=0.222  Sum_probs=145.4

Q ss_pred             CccccCC-CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh---hccC
Q 048681            4 ISGLFRL-RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV---SMLH   79 (266)
Q Consensus         4 ~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~---~~~~   79 (266)
                      |++|..+ ++|+.|++.++.+. .+|..| ...+|+.|++.+|.+. .++. ++..+ ++|+.|+++++....   .+..
T Consensus       581 p~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~-~~~~l-~~Lk~L~Ls~~~~l~~ip~ls~  655 (1153)
T PLN03210        581 PEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD-GVHSL-TGLRNIDLRGSKNLKEIPDLSM  655 (1153)
T ss_pred             CcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc-ccccC-CCCCEEECCCCCCcCcCCcccc
Confidence            3445444 35777777777766 556655 3577777777777776 4555 55555 777777777664222   2222


Q ss_pred             CCCccee----cccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEE
Q 048681           80 FPNSFTI----TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFL  155 (266)
Q Consensus        80 ~~~~~~~----~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  155 (266)
                      ++++..+    ...+..+|.++..+++|+.|++++|.....+|..+  .+++|+.|++++|.....+|..   ..+|+.|
T Consensus       656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L  730 (1153)
T PLN03210        656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWL  730 (1153)
T ss_pred             CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence            3333222    22346678888888888889888876555777654  3778888888888655444432   3577888


Q ss_pred             EccCCeeeecCCccccccccchhHHHhhhcccc-----------------------------cccccCCCCcCCCCccEE
Q 048681          156 DLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTT-----------------------------KETSYSYKGKPLNKMYGI  206 (266)
Q Consensus       156 ~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~L~~L  206 (266)
                      ++++|.+. .+|...  .+.++..|.+..+...                             .....+.....+++|+.|
T Consensus       731 ~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L  807 (1153)
T PLN03210        731 DLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL  807 (1153)
T ss_pred             ecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence            88888776 455432  2333333333221110                             011122223345666666


Q ss_pred             EccCCcccccCCccccccccCCeeecccccccccCC-------eEEeeCCeeeecCChhhhhcccCC
Q 048681          207 DLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       207 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      ++++|..-+.+|..+ .+++|+.|++++|.....+|       +|++++|.|. .+|.++..+++|+
T Consensus       808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~  872 (1153)
T PLN03210        808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLS  872 (1153)
T ss_pred             ECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCC
Confidence            666654322455443 45666666666654333222       7888888887 7888777766653

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.65  E-value=3.4e-16  Score=143.02  Aligned_cols=204  Identities=23%  Similarity=0.336  Sum_probs=108.1

Q ss_pred             CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCc
Q 048681           12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWR   91 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~   91 (266)
                      .|+.|++++|.++ .+|..+.  .+|++|++++|.++ .+|. .+   +..|+.|++++|.+                 .
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l---~~~L~~L~Ls~N~L-----------------~  254 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPA-TL---PDTIQEMELSINRI-----------------T  254 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCCh-hh---hccccEEECcCCcc-----------------C
Confidence            4555556555555 2333332  35566666665555 3343 22   23455555555542                 2


Q ss_pred             ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681           92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA  171 (266)
Q Consensus        92 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  171 (266)
                      .+|..+.  ..|+.|++++|++. .+|..+.   .+|+.|++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.
T Consensus       255 ~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~  324 (754)
T PRK15370        255 ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETLP  324 (754)
T ss_pred             cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcccc
Confidence            2232221  35666666666665 4554432   35666666666665 3443322  35666666666665 3443332


Q ss_pred             ccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-------eE
Q 048681          172 IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SL  244 (266)
Q Consensus       172 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l  244 (266)
                         .+++.|++..+....++.     ..+++|+.|++++|.++ .+|..+.  ++|+.|++++|.+++.++       .|
T Consensus       325 ---~sL~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~sL~~L  393 (754)
T PRK15370        325 ---PGLKTLEAGENALTSLPA-----SLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLPAALQIM  393 (754)
T ss_pred             ---ccceeccccCCccccCCh-----hhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHHHHHHHH
Confidence               344555554443332221     11356777777777776 4565442  567777777777775544       56


Q ss_pred             EeeCCeeeecCChhhhhc
Q 048681          245 DVSYNNLNGKIPPQLVEL  262 (266)
Q Consensus       245 ~l~~n~i~~~~p~~~~~~  262 (266)
                      ++++|.+. .+|.++.++
T Consensus       394 dLs~N~L~-~LP~sl~~~  410 (754)
T PRK15370        394 QASRNNLV-RLPESLPHF  410 (754)
T ss_pred             hhccCCcc-cCchhHHHH
Confidence            77777776 566655443

>PLN03210 Resistant to P

Probab=99.62  E-value=4.4e-15  Score=143.39  Aligned_cols=231  Identities=20%  Similarity=0.217  Sum_probs=137.5

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhcc---CCC
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSML---HFP   81 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~---~~~   81 (266)
                      +++..+++|++++++++.....+|. +..+++|++|++++|.....+|. .+..+ ++|+.|++++|.....+.   .++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L-~~L~~L~L~~c~~L~~Lp~~i~l~  704 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYL-NKLEDLDMSRCENLEILPTGINLK  704 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhcc-CCCCEEeCCCCCCcCccCCcCCCC
Confidence            4455667777777766543334443 56667777777776655445665 56555 666667666654221111   122


Q ss_pred             Ccceecc----cCcccccCcccccCccEEEccCccccccCCccc-----------------------------cccCCCC
Q 048681           82 NSFTITM----SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI-----------------------------GVYFPRL  128 (266)
Q Consensus        82 ~~~~~~~----~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----------------------------~~~~~~L  128 (266)
                      .+..+..    .+..+|..   ..+|++|++++|.+. .+|..+                             ....++|
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence            2211111    11112211   234555555555543 333211                             1113578


Q ss_pred             cEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEc
Q 048681          129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDL  208 (266)
Q Consensus       129 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L  208 (266)
                      +.|++++|.....+|..+..+++|+.|++++|...+.+|...  .+.+++.++++.+......     +..+.+|+.|++
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~-----p~~~~nL~~L~L  853 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTF-----PDISTNISDLNL  853 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccc-----cccccccCEeEC
Confidence            888888887666788888899999999998875433666554  4667777777765432211     112467889999


Q ss_pred             cCCcccccCCccccccccCCeeeccccc-ccccCC---------eEEeeCCe
Q 048681          209 SCNKLVGEIPPQIGKLTRVRALNLSHNN-LTGVIP---------SLDVSYNN  250 (266)
Q Consensus       209 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------~l~l~~n~  250 (266)
                      ++|.++ .+|..+..+++|+.|++.+|+ +.+.++         .+++++|.
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999988 788888889999999998864 444322         56666665

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.61  E-value=2.4e-15  Score=137.08  Aligned_cols=215  Identities=21%  Similarity=0.206  Sum_probs=110.1

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCccee---
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTI---   86 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~---   86 (266)
                      +++|++|++++|.++. +|..   .++|++|++++|.++. +|.     .+.+|+.|++++|.+..-....+.+..+   
T Consensus       241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~-Lp~-----lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS  310 (788)
T PRK15387        241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTH-LPA-----LPSGLCKLWIFGNQLTSLPVLPPGLQELSVS  310 (788)
T ss_pred             CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhh-hhh-----chhhcCEEECcCCccccccccccccceeECC
Confidence            5789999999999984 4532   3577777777777652 322     2345556666665521111111122111   


Q ss_pred             cccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC
Q 048681           87 TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI  166 (266)
Q Consensus        87 ~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  166 (266)
                      .+.+..+|...   ..|+.|++++|.++ .+|..    ..+|+.|++++|.+. .+|..   ..+|+.|++++|+++ .+
T Consensus       311 ~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~L  377 (788)
T PRK15387        311 DNQLASLPALP---SELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SL  377 (788)
T ss_pred             CCccccCCCCc---ccccccccccCccc-ccccc----ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cC
Confidence            12222233211   23555666666665 34431    235666666666665 33432   234555666666665 34


Q ss_pred             CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----
Q 048681          167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----  242 (266)
Q Consensus       167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----  242 (266)
                      |...    .++..+++..+....++.      .++.|+.|++++|.++ .+|..   ..+|+.|++++|.++..+.    
T Consensus       378 P~l~----~~L~~LdLs~N~Lt~LP~------l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~  443 (788)
T PRK15387        378 PALP----SGLKELIVSGNRLTSLPV------LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIH  443 (788)
T ss_pred             cccc----cccceEEecCCcccCCCC------cccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhh
Confidence            4321    234444444433322111      1245666666666665 35542   2345566666666663322    


Q ss_pred             -----eEEeeCCeeeecCChhhhh
Q 048681          243 -----SLDVSYNNLNGKIPPQLVE  261 (266)
Q Consensus       243 -----~l~l~~n~i~~~~p~~~~~  261 (266)
                           .|++++|++.+.+|..+..
T Consensus       444 L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        444 LSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             ccCCCeEECCCCCCCchHHHHHHH
Confidence                 4666666666666665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=1.9e-14  Score=131.67  Aligned_cols=203  Identities=22%  Similarity=0.322  Sum_probs=154.1

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      .+.+.|+++++.++ .+|..+.  ++|+.|++++|+++ .+|. .+   +.+|++|++++|..                 
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~-~l---~~nL~~L~Ls~N~L-----------------  232 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPE-NL---QGNIKTLYANSNQL-----------------  232 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCCh-hh---ccCCCEEECCCCcc-----------------
Confidence            46788999999998 5566554  58999999999998 5665 33   26899999998863                 


Q ss_pred             cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681           91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL  170 (266)
Q Consensus        91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  170 (266)
                      ..+|..+  ...|+.|++++|.+. .+|..+.   .+|+.|++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+
T Consensus       233 tsLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l  302 (754)
T PRK15370        233 TSIPATL--PDTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL  302 (754)
T ss_pred             ccCChhh--hccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc
Confidence            2233332  246999999999998 7887654   47999999999997 6676553  58999999999998 566554


Q ss_pred             cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-------e
Q 048681          171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------S  243 (266)
Q Consensus       171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~  243 (266)
                      .   .++..+++..+....++.     ..+++|+.|++++|.++ .+|..+.  ++|+.|++++|+++..+.       .
T Consensus       303 p---~sL~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~  371 (754)
T PRK15370        303 P---SGITHLNVQSNSLTALPE-----TLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETLPPTITT  371 (754)
T ss_pred             h---hhHHHHHhcCCccccCCc-----cccccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhhcCCcCE
Confidence            3   367777777665543321     12468999999999998 5776553  799999999999884322       8


Q ss_pred             EEeeCCeeeecCChhhh
Q 048681          244 LDVSYNNLNGKIPPQLV  260 (266)
Q Consensus       244 l~l~~n~i~~~~p~~~~  260 (266)
                      |++++|.+. .+|+.+.
T Consensus       372 LdLs~N~Lt-~LP~~l~  387 (754)
T PRK15370        372 LDVSRNALT-NLPENLP  387 (754)
T ss_pred             EECCCCcCC-CCCHhHH
Confidence            999999998 6787663

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=7.5e-17  Score=118.45  Aligned_cols=161  Identities=26%  Similarity=0.423  Sum_probs=134.7

Q ss_pred             CCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhccC
Q 048681            3 SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSMLH   79 (266)
Q Consensus         3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~~~   79 (266)
                      ..+++.++.+.+.|.+++|.++ .+|..|+.+.+|+.|++++|+|+ ..|. ++..+ ++|+.|++.-|.   .+.++.+
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~-~issl-~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPT-SISSL-PKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             hcccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcCh-hhhhc-hhhhheecchhhhhcCccccCC
Confidence            4556677788888999999998 56777999999999999999998 5787 88888 999999998887   5677788


Q ss_pred             CCCcceec---ccC--cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCE
Q 048681           80 FPNSFTIT---MSW--RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKF  154 (266)
Q Consensus        80 ~~~~~~~~---~~~--~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  154 (266)
                      +|.+-.++   .++  ..+|+.|.-++-|+.|++++|.+. .+|+.++. +++|+.|.+..|.+- ..|..++.+..|++
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrdndll-~lpkeig~lt~lre  177 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRDNDLL-SLPKEIGDLTRLRE  177 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence            88764322   222  458899999999999999999998 88988887 899999999999987 78999999999999


Q ss_pred             EEccCCeeeecCCcccc
Q 048681          155 LDLSHNQLTGEIPKHLA  171 (266)
Q Consensus       155 L~l~~n~~~~~~~~~~~  171 (266)
                      |.+.+|+++ .+|+.+.
T Consensus       178 lhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  178 LHIQGNRLT-VLPPELA  193 (264)
T ss_pred             Hhcccceee-ecChhhh
Confidence            999999998 6665553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.55  E-value=1.7e-16  Score=130.21  Aligned_cols=246  Identities=17%  Similarity=0.125  Sum_probs=133.8

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhccccccccccc-chh---hhhc-cCCC---Ccce
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLN-YLV---LVSM-LHFP---NSFT   85 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~-~~~---~~~~-~~~~---~~~~   85 (266)
                      +++.+..|.|+.+.+.+|..+++|+.|||++|+|+...|. +|..+ ..+..|-+.+ |.+   +.+. .++.   .+..
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGL-ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhh-HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            4556666666666666666666666666666666544444 55555 4444444444 321   1111 1111   1111


Q ss_pred             ecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccc------------ccCCccccCCCCC
Q 048681           86 ITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFD------------GSIPSSIGDLNSL  152 (266)
Q Consensus        86 ~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------~~~~~~l~~l~~L  152 (266)
                      ..+.+++++ +.+.+++++..|.+.+|.+. .++.+.+..+..++.+-+..|.+-            ...|-.++.....
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            222223333 44667777777888887776 666655555667777766665521            1122223333333


Q ss_pred             CEEEccCCeeeecCCccccccccchhHHHhhhccccccc--ccCCCCcCCCCccEEEccCCcccccCCccccccccCCee
Q 048681          153 KFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET--SYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRAL  230 (266)
Q Consensus       153 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  230 (266)
                      ....+.+.++. ..++.-+..  .++.+...........  .-...+..++.|+.|+|++|.+++.-+.+|.....+++|
T Consensus       227 ~p~rl~~~Ri~-q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  227 SPYRLYYKRIN-QEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             chHHHHHHHhc-ccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            33334444433 121111111  1111111111111010  001112347899999999999996667789999999999


Q ss_pred             eccccccccc----------CCeEEeeCCeeeecCChhhhhcccC
Q 048681          231 NLSHNNLTGV----------IPSLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       231 ~l~~n~l~~~----------~~~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      .|..|++..+          +..|+|.+|.|+...|..|..+.+|
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            9999998733          3389999999998888888776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.51  E-value=1.6e-15  Score=136.08  Aligned_cols=60  Identities=27%  Similarity=0.282  Sum_probs=46.9

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ...+|++++++.+.+. .+|+.+..+.+|+.++..+|.++ .+|. .+... ++|+.|...+|.
T Consensus       239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~-~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRI-TSLVSLSAAYNE  298 (1081)
T ss_pred             ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhh-hhHHHHHhhhhh
Confidence            3456778888888887 45677888888888888888886 5676 67777 888888888887

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.50  E-value=9e-16  Score=128.87  Aligned_cols=144  Identities=23%  Similarity=0.183  Sum_probs=91.0

Q ss_pred             cccCCCCCcEEECCCccCcc------CCChhhhcCCCCcEEeccCCcccccCCCCcchhhccc---ccccccccchhhhh
Q 048681            6 GLFRLRNLQELHMGANDLRG------TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS---IEYLSTLNYLVLVS   76 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~---L~~L~~~~~~~~~~   76 (266)
                      .+...+.+++++++++.+..      .++..+..+++|+.|++++|.+....+. .+..+ ..   |+.|++++|.....
T Consensus        46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l-~~~~~L~~L~ls~~~~~~~  123 (319)
T cd00116          46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG-VLESL-LRSSSLQELKLNNNGLGDR  123 (319)
T ss_pred             HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH-HHHHH-hccCcccEEEeeCCccchH
Confidence            34567789999999887762      2345677788999999999988754444 55555 44   99999988863210


Q ss_pred             ccCCCCcceecccCcccccCcccc-cCccEEEccCccccccC----CccccccCCCCcEEEccccccccc----CCcccc
Q 048681           77 MLHFPNSFTITMSWRPFRMPIQSH-WHLATLYVSKKFFQGNI----PLEIGVYFPRLMYLNLSRNEFDGS----IPSSIG  147 (266)
Q Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~  147 (266)
                      .            ...+...+..+ ++|++|++++|.+++..    +..+. .+++|++|++++|.+.+.    ++..+.
T Consensus       124 ~------------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~  190 (319)
T cd00116         124 G------------LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLK  190 (319)
T ss_pred             H------------HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHH
Confidence            0            01112223444 67788888888776321    11222 245788888888777522    233344


Q ss_pred             CCCCCCEEEccCCeeee
Q 048681          148 DLNSLKFLDLSHNQLTG  164 (266)
Q Consensus       148 ~l~~L~~L~l~~n~~~~  164 (266)
                      ..++|+.|++++|.+++
T Consensus       191 ~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         191 ANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             hCCCCCEEeccCCccCh
Confidence            55678888888877653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=2.8e-15  Score=125.85  Aligned_cols=229  Identities=24%  Similarity=0.206  Sum_probs=151.2

Q ss_pred             ccCCCCCcEEECCCccCccC----CChhhhcCCCCcEEeccCCcccc------cCCCCcchhhcccccccccccchhhhh
Q 048681            7 LFRLRNLQELHMGANDLRGT----LPWCLENITSLKVLDLYLNQLTR------NISSSPLLHLITSIEYLSTLNYLVLVS   76 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~------~~~~~~~~~~~~~L~~L~~~~~~~~~~   76 (266)
                      |..++.|++++++++.++..    ++..+...+.+++++++++.+.+      .++. .+..+ ++|+.|+++++.....
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~-~~L~~L~l~~~~~~~~   96 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKG-CGLQELDLSDNALGPD   96 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhc-CceeEEEccCCCCChh
Confidence            34567799999999998543    44555677889999999998762      1122 34444 7999999988873211


Q ss_pred             ccCCCCcceecccCcccccCcccc---cCccEEEccCcccccc----CCccccccC-CCCcEEEcccccccc----cCCc
Q 048681           77 MLHFPNSFTITMSWRPFRMPIQSH---WHLATLYVSKKFFQGN----IPLEIGVYF-PRLMYLNLSRNEFDG----SIPS  144 (266)
Q Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~---~~L~~L~l~~n~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~----~~~~  144 (266)
                                      .+..+..+   ++|++|++++|++.+.    +...+.. + ++|+.+++++|.+++    .++.
T Consensus        97 ----------------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~-~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          97 ----------------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD-LPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             ----------------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHh-CCCCceEEEcCCCcCCchHHHHHHH
Confidence                            11112222   4599999999988732    2222333 4 789999999999873    2344


Q ss_pred             cccCCCCCCEEEccCCeeeecCCcccc---ccccchhHHHhhhccccccc--ccCCCCcCCCCccEEEccCCcccccCCc
Q 048681          145 SIGDLNSLKFLDLSHNQLTGEIPKHLA---IGCFNLEYLVESLMFTTKET--SYSYKGKPLNKMYGIDLSCNKLVGEIPP  219 (266)
Q Consensus       145 ~l~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~  219 (266)
                      .+..+++|+.|++++|.+++.....+.   ..+.+++.+++..+...+..  ........+++|+.|++++|.+++....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            566778999999999998743222222   23347777777766544332  2223334568899999999988753333


Q ss_pred             ccc-----ccccCCeeecccccccc--c------------CCeEEeeCCeeeec
Q 048681          220 QIG-----KLTRVRALNLSHNNLTG--V------------IPSLDVSYNNLNGK  254 (266)
Q Consensus       220 ~~~-----~l~~L~~L~l~~n~l~~--~------------~~~l~l~~n~i~~~  254 (266)
                      .+.     ..+.|++|++.+|.++.  .            +..+++++|.+..+
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            222     23789999999998861  1            22899999998754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.26  E-value=1.6e-13  Score=113.02  Aligned_cols=214  Identities=21%  Similarity=0.168  Sum_probs=125.8

Q ss_pred             CCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccE
Q 048681           26 TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLAT  105 (266)
Q Consensus        26 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~  105 (266)
                      .+|..+.  +.-..++|..|.|+ .+|..+|..+ .+|+.||+++|++..-                -|+.|.-++.+.+
T Consensus        60 eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l-~~LRrLdLS~N~Is~I----------------~p~AF~GL~~l~~  119 (498)
T KOG4237|consen   60 EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTL-HRLRRLDLSKNNISFI----------------APDAFKGLASLLS  119 (498)
T ss_pred             cCcccCC--CcceEEEeccCCcc-cCChhhccch-hhhceecccccchhhc----------------ChHhhhhhHhhhH
Confidence            3444433  45678999999998 5777577777 9999999999994111                1333444455555


Q ss_pred             EEccC-ccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhh
Q 048681          106 LYVSK-KFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL  184 (266)
Q Consensus       106 L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~  184 (266)
                      |.+.+ |+++ .+|...+..+..++.|.+.-|.+.-...+++..++++..|.+..|.+. .++...++.+.+++.+-.-.
T Consensus       120 Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~  197 (498)
T KOG4237|consen  120 LVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQ  197 (498)
T ss_pred             HHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhc
Confidence            44444 6666 566666655666666666666665333455666666666666666665 45554444444444433221


Q ss_pred             cc------------------------------------cccccccCCCCcCCCCccEE---EccCCcccccCCc-ccccc
Q 048681          185 MF------------------------------------TTKETSYSYKGKPLNKMYGI---DLSCNKLVGEIPP-QIGKL  224 (266)
Q Consensus       185 ~~------------------------------------~~~~~~~~~~~~~~~~L~~L---~L~~n~i~~~~~~-~~~~l  224 (266)
                      +.                                    .+..+...+    ...++.+   -.+.+...+..|. .|..+
T Consensus       198 np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf----~c~~esl~s~~~~~d~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  198 NPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF----LCSLESLPSRLSSEDFPDSICPAKCFKKL  273 (498)
T ss_pred             CccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhh----hhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence            11                                    011111000    1112222   1223333334443 48899


Q ss_pred             ccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681          225 TRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       225 ~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      ++|++|++++|+++++-+          +|.|..|.|.-.-..-|.++.+|
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L  324 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL  324 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence            999999999999996633          89999999874333444555444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=2.8e-13  Score=116.27  Aligned_cols=178  Identities=24%  Similarity=0.287  Sum_probs=135.5

Q ss_pred             CCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCccc
Q 048681           34 ITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFF  113 (266)
Q Consensus        34 l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~  113 (266)
                      +..-...|++.|++. .+|. .+..+ -.|+.+.+..|.+                 ..+|..+..+..|++++++.|++
T Consensus        74 ltdt~~aDlsrNR~~-elp~-~~~~f-~~Le~liLy~n~~-----------------r~ip~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPE-EACAF-VSLESLILYHNCI-----------------RTIPEAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             ccchhhhhccccccc-cCch-HHHHH-HHHHHHHHHhccc-----------------eecchhhhhhhHHHHhhhccchh
Confidence            455566788888876 5776 66666 6777777776654                 45677777788888888888888


Q ss_pred             cccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhccccccccc
Q 048681          114 QGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSY  193 (266)
Q Consensus       114 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  193 (266)
                      + .+|..++. + -|+.|.+++|.+. .+|..++..+.|..|+.+.|++. .+|..+ .++.++..+.+.+++...+.+.
T Consensus       134 S-~lp~~lC~-l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql-~~l~slr~l~vrRn~l~~lp~E  207 (722)
T KOG0532|consen  134 S-HLPDGLCD-L-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL-GYLTSLRDLNVRRNHLEDLPEE  207 (722)
T ss_pred             h-cCChhhhc-C-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHh-hhHHHHHHHHHhhhhhhhCCHH
Confidence            7 88888775 3 6888888888886 77877777788888888888887 566665 4666777777777766655543


Q ss_pred             CCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          194 SYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       194 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      .-    .=.|..||++.|++. .+|-.|..|+.|++|-|.+|++.+.+.
T Consensus       208 l~----~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  208 LC----SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             Hh----CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence            32    235889999999998 899999999999999999999986544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.21  E-value=1.6e-11  Score=106.31  Aligned_cols=197  Identities=28%  Similarity=0.339  Sum_probs=97.4

Q ss_pred             EEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcc-cccccccccchhhhhccCCCCcceecccCccc
Q 048681           15 ELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT-SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        15 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~-~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      .+..+.+.+. .....+..++.++.|++.+|+++. ++. ..... . +|+.|+++.|.+                 ..+
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~-i~~-~~~~~-~~nL~~L~l~~N~i-----------------~~l  155 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITD-IPP-LIGLL-KSNLKELDLSDNKI-----------------ESL  155 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCccccc-Ccc-ccccc-hhhcccccccccch-----------------hhh
Confidence            3555555553 122334445566666666666653 332 22222 2 566666666653                 112


Q ss_pred             ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccccc
Q 048681           94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG  173 (266)
Q Consensus        94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  173 (266)
                      |..+..++.|+.|+++.|++. .+|..... .++|+.|++++|.+. .+|........|+++.+++|+.. ..+..+ ..
T Consensus       156 ~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~-~~  230 (394)
T COG4886         156 PSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSL-SN  230 (394)
T ss_pred             hhhhhccccccccccCCchhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhh-hh
Confidence            223344455555555555554 44433222 445555555555554 34444334444555555555322 111111 11


Q ss_pred             ccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       174 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      +.++..+.+..+...   ........++.++.|+++.|.++ .++. ++...+++.+++++|.++..++
T Consensus       231 ~~~l~~l~l~~n~~~---~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         231 LKNLSGLELSNNKLE---DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccccccccCCceee---eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence            222222221111111   10122223667888999998888 4554 7888889999998888775544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3e-12  Score=106.76  Aligned_cols=217  Identities=18%  Similarity=0.086  Sum_probs=150.1

Q ss_pred             cCCCCCcEEECCCccCccCCC--hhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681            8 FRLRNLQELHMGANDLRGTLP--WCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT   85 (266)
Q Consensus         8 ~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~   85 (266)
                      +++.+|+++.+.++.+. ..+  +....+++++.|||+.|-++.-.+.-.|...++.|+.|+++.|.......+..    
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----  192 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence            47889999999999887 333  36678999999999999876532221344444999999999987322211100    


Q ss_pred             ecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681           86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE  165 (266)
Q Consensus        86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  165 (266)
                                 -..+.+++.|.+++|.++..--..+...+|.|+.|++.+|..-.........+..|+.|++++|.+.+.
T Consensus       193 -----------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~  261 (505)
T KOG3207|consen  193 -----------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF  261 (505)
T ss_pred             -----------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence                       124578999999999998543344444589999999999952212233345667899999999998754


Q ss_pred             CCccccccccchhHHHhhhcccccccccCCCC----cCCCCccEEEccCCcccc-cCCccccccccCCeeeccccccccc
Q 048681          166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKG----KPLNKMYGIDLSCNKLVG-EIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       166 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      ........++.+..+.++.++...+....-..    ..+++|++|++..|.+.+ .....+.-+++|+.|.+..|+++..
T Consensus       262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            33334456777777877777776665443311    237899999999999863 2334566778889998888888743

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=8.8e-11  Score=101.65  Aligned_cols=192  Identities=31%  Similarity=0.416  Sum_probs=139.8

Q ss_pred             cEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCccccc-CccEEEccCcccccc
Q 048681           38 KVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHW-HLATLYVSKKFFQGN  116 (266)
Q Consensus        38 ~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~n~~~~~  116 (266)
                      +.+++..+.+...+.  .+... +.+..|++.++.+                 ..++....... +|+.|+++.|.+. .
T Consensus        96 ~~l~~~~~~~~~~~~--~~~~~-~~l~~L~l~~n~i-----------------~~i~~~~~~~~~nL~~L~l~~N~i~-~  154 (394)
T COG4886          96 PSLDLNLNRLRSNIS--ELLEL-TNLTSLDLDNNNI-----------------TDIPPLIGLLKSNLKELDLSDNKIE-S  154 (394)
T ss_pred             ceeeccccccccCch--hhhcc-cceeEEecCCccc-----------------ccCccccccchhhcccccccccchh-h
Confidence            368888888743222  34454 6788888888774                 34455555564 8999999999998 6


Q ss_pred             CCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCC
Q 048681          117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYK  196 (266)
Q Consensus       117 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  196 (266)
                      +|..+.. +++|+.|++++|++. .++......++|+.+++++|++. .+|... .....+..+.+..+..   ......
T Consensus       155 l~~~~~~-l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~---~~~~~~  227 (394)
T COG4886         155 LPSPLRN-LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI-ELLSALEELDLSNNSI---IELLSS  227 (394)
T ss_pred             hhhhhhc-cccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhh-hhhhhhhhhhhcCCcc---eecchh
Confidence            6545555 899999999999998 66766668999999999999998 666543 2233467777766641   112222


Q ss_pred             CcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------eEEeeCCeeeecCChh
Q 048681          197 GKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLNGKIPPQ  258 (266)
Q Consensus       197 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~~~~p~~  258 (266)
                      ......+..+.+..|.+. ..+..+..++.++.|++++|.++...+        .|++++|.+....|..
T Consensus       228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hhhcccccccccCCceee-eccchhccccccceeccccccccccccccccCccCEEeccCccccccchhh
Confidence            233677888888888887 457778889999999999999986643        8999999988554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=3.8e-11  Score=90.96  Aligned_cols=114  Identities=27%  Similarity=0.313  Sum_probs=35.3

Q ss_pred             CCccccCCCCCcEEECCCccCccCCChhhh-cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681            3 SISGLFRLRNLQELHMGANDLRGTLPWCLE-NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP   81 (266)
Q Consensus         3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~   81 (266)
                      ..+.+-+..++++|++.+|.|..+  +.++ .+.+|+.|++++|.|+. +.  ++.                        
T Consensus        11 ~~~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~--~l~------------------------   61 (175)
T PF14580_consen   11 QIAQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE--GLP------------------------   61 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S---T--T--------------------------
T ss_pred             cccccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc--Ccc------------------------
Confidence            445556666777888888877743  2344 46778888888887763 22  222                        


Q ss_pred             CcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccccc-CCccccCCCCCCEEEccCC
Q 048681           82 NSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS-IPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n  160 (266)
                                       .++.|++|++++|+++ .++..+...+++|+.|++.+|.+... ....+..+++|+.|++.+|
T Consensus        62 -----------------~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   62 -----------------GLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             -------------------TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             -----------------ChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence                             3456777777777776 55444433467788888888877532 2345667788888888888


Q ss_pred             eee
Q 048681          161 QLT  163 (266)
Q Consensus       161 ~~~  163 (266)
                      .+.
T Consensus       124 Pv~  126 (175)
T PF14580_consen  124 PVC  126 (175)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=2e-11  Score=105.06  Aligned_cols=142  Identities=29%  Similarity=0.472  Sum_probs=116.5

Q ss_pred             cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681           91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL  170 (266)
Q Consensus        91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  170 (266)
                      .++|..++.+..|+.+.++.|.+. .+|..++. +..|+.++++.|+++ ..|..+..++ |+.|.+++|+++ .+|+.+
T Consensus        88 ~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~i  162 (722)
T KOG0532|consen   88 SELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEI  162 (722)
T ss_pred             ccCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccc
Confidence            567777888899999999999997 78888877 889999999999998 8898888888 999999999998 677766


Q ss_pred             cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------
Q 048681          171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------  242 (266)
Q Consensus       171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------  242 (266)
                      . .                          ..+|..||.+.|.+. .+|..++++.+|+.|++..|++...++        
T Consensus       163 g-~--------------------------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi  214 (722)
T KOG0532|consen  163 G-L--------------------------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLI  214 (722)
T ss_pred             c-c--------------------------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCcee
Confidence            3 2                          566777778888777 677777888888888888887776655        


Q ss_pred             eEEeeCCeeeecCChhhhhcccCC
Q 048681          243 SLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       243 ~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      .||++.|+++ .+|-+|.+++.|+
T Consensus       215 ~lDfScNkis-~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  215 RLDFSCNKIS-YLPVDFRKMRHLQ  237 (722)
T ss_pred             eeecccCcee-ecchhhhhhhhhe
Confidence            6888888887 7888888887664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=1.4e-11  Score=100.15  Aligned_cols=67  Identities=22%  Similarity=0.235  Sum_probs=40.2

Q ss_pred             cccCccEEEccCcccccc---CCccccccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeec
Q 048681           99 SHWHLATLYVSKKFFQGN---IPLEIGVYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGE  165 (266)
Q Consensus        99 ~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~  165 (266)
                      .-++|+.+..+.|++...   .-+..+...+.|+.+.+..|.+...    ....+..++.|+.|++.+|.++..
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE  228 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence            445677777777776521   1112223356777777777777421    223466777777777777777643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=2.3e-10  Score=86.68  Aligned_cols=126  Identities=25%  Similarity=0.267  Sum_probs=35.3

Q ss_pred             cccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchh
Q 048681           99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE  178 (266)
Q Consensus        99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~  178 (266)
                      +..++++|++.+|.++ .+. .+...+.+|+.|++++|.+.. + ..+..++.|+.|++++|+++ .+.+.+...+++++
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            3446777788887776 443 343336677888888887763 2 34666777888888888876 45443323334444


Q ss_pred             HHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCc----cccccccCCeee
Q 048681          179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP----QIGKLTRVRALN  231 (266)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~  231 (266)
                      .|.+..+...+....... ..+++|+.|++.+|.++. .+.    .+..+|+|+.||
T Consensus        92 ~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEET
T ss_pred             EEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeC
Confidence            444443333333322111 125556666666666552 232    234455666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=1.3e-10  Score=93.09  Aligned_cols=136  Identities=24%  Similarity=0.297  Sum_probs=95.9

Q ss_pred             cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccc
Q 048681           97 IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN  176 (266)
Q Consensus        97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  176 (266)
                      +.-++.|+++++++|.++ .+...+. ..+.++.|++++|.+. .. +.++.+++|+.|++++|.++. + .++...+.+
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-~-~Gwh~KLGN  353 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-C-VGWHLKLGN  353 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhh-hccceeEEecccccee-ee-hhhhhcccceEeecccchhHh-h-hhhHhhhcC
Confidence            445667889999999887 5555443 3788999999999986 33 347888999999999998862 2 344444556


Q ss_pred             hhHHHhhhcccccccccCCCCcCCCCccEEEccCCccccc-CCccccccccCCeeecccccccccCC
Q 048681          177 LEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE-IPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       177 l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      ++.+.+..+.......+..    +=+|..||+.+|+|... -...++.+|-|.++.+.+|++.+.+.
T Consensus       354 IKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  354 IKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             EeeeehhhhhHhhhhhhHh----hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            6666655554444333222    55788899999988732 23457888999999999999887765

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=3e-09  Score=96.92  Aligned_cols=109  Identities=20%  Similarity=0.250  Sum_probs=74.9

Q ss_pred             CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCc
Q 048681           12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWR   91 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~   91 (266)
                      .++.|++++|.+.+.+|..|..+++|+.|++++|.+++.+|. .+..+ +.|+.|++++|...                .
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l-~~L~~LdLs~N~ls----------------g  480 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSI-TSLEVLDLSYNSFN----------------G  480 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCC-CCCCEEECCCCCCC----------------C
Confidence            367788888888888888888888888888888888877776 66666 67777776666521                1


Q ss_pred             ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccc
Q 048681           92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEF  138 (266)
Q Consensus        92 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~  138 (266)
                      .+|..+..+++|+.|++++|.+++.+|..+.....++..+++.+|..
T Consensus       481 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            24555566666667777666666666665554334455666665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.90  E-value=6.2e-11  Score=96.39  Aligned_cols=229  Identities=18%  Similarity=0.149  Sum_probs=132.0

Q ss_pred             cCCCCCcEEECCCccCccCCCh----hhhcCCCCcEEeccCCcccc----cCCC------Ccchhhcccccccccccch-
Q 048681            8 FRLRNLQELHMGANDLRGTLPW----CLENITSLKVLDLYLNQLTR----NISS------SPLLHLITSIEYLSTLNYL-   72 (266)
Q Consensus         8 ~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~i~~----~~~~------~~~~~~~~~L~~L~~~~~~-   72 (266)
                      .....++++++++|.+...-.+    .++..++|+..++++-. ++    .+|+      .++... +.|+++|+|.|- 
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~-~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGC-PKLQKLDLSDNAF  104 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcC-CceeEeecccccc
Confidence            4567788999999988865333    44456788888887642 22    1221      022233 577777777776 


Q ss_pred             hhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCcccc------------ccCCCCcEEEcccccccc
Q 048681           73 VLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG------------VYFPRLMYLNLSRNEFDG  140 (266)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~  140 (266)
                      .+.++..+-             .-+.++..|++|++.+|.+.......+.            ..-++|+++...+|.+..
T Consensus       105 G~~g~~~l~-------------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen  105 GPKGIRGLE-------------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CccchHHHH-------------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            333322211             1244567788888888877632111110            113467888887777742


Q ss_pred             c----CCccccCCCCCCEEEccCCeeeecC---CccccccccchhHHHhhhccccccccc--CCCCcCCCCccEEEccCC
Q 048681          141 S----IPSSIGDLNSLKFLDLSHNQLTGEI---PKHLAIGCFNLEYLVESLMFTTKETSY--SYKGKPLNKMYGIDLSCN  211 (266)
Q Consensus       141 ~----~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~~~~L~~L~L~~n  211 (266)
                      .    +...+...+.|+.+.+..|.+...-   -..-+..|++++.|+++++-.......  ..+....+.|+++.+++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            1    2335566677888888877664210   011134677777777776654443322  222233456777777777


Q ss_pred             cccccCCc----cc-cccccCCeeeccccccccc--------------CCeEEeeCCee
Q 048681          212 KLVGEIPP----QI-GKLTRVRALNLSHNNLTGV--------------IPSLDVSYNNL  251 (266)
Q Consensus       212 ~i~~~~~~----~~-~~l~~L~~L~l~~n~l~~~--------------~~~l~l~~n~i  251 (266)
                      .+......    .+ ...++|..+.+.+|.++..              +..|+|++|++
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            77644332    22 2356777777777777722              11788888887

>PLN03150 hypothetical protein; Provisional

Probab=98.90  E-value=3.9e-09  Score=96.20  Aligned_cols=106  Identities=33%  Similarity=0.558  Sum_probs=61.9

Q ss_pred             ccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHh
Q 048681          103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE  182 (266)
Q Consensus       103 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~  182 (266)
                      ++.|++++|.+.+.+|..+.. +++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.+.           
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-----------  487 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-----------  487 (623)
T ss_pred             EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-----------
Confidence            555666666666566655554 56666666666666555666666666666666666666655554442           


Q ss_pred             hhcccccccccCCCCcCCCCccEEEccCCcccccCCcccccc-ccCCeeeccccc
Q 048681          183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKL-TRVRALNLSHNN  236 (266)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~  236 (266)
                                      .+++|+.|+|++|.+.+.+|..+... .++..+++.+|.
T Consensus       488 ----------------~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        488 ----------------QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ----------------cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence                            24566666666666666666555432 344555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=2.3e-10  Score=95.72  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=89.5

Q ss_pred             EECCCccCccCCChhhh----cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCc
Q 048681           16 LHMGANDLRGTLPWCLE----NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWR   91 (266)
Q Consensus        16 L~l~~n~i~~~~~~~~~----~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~   91 (266)
                      +.+++-.+....-+.++    ++.+|+...|.++.+...... .-.+.|+.++.||+++|.              ..+|.
T Consensus        98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL--------------~~nw~  162 (505)
T KOG3207|consen   98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNL--------------FHNWF  162 (505)
T ss_pred             hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhh--------------HHhHH
Confidence            34455555544334443    578899999999988643222 334445999999999985              34555


Q ss_pred             ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCe
Q 048681           92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS-IPSSIGDLNSLKFLDLSHNQ  161 (266)
Q Consensus        92 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~  161 (266)
                      .+..-..-+++|+.|+++.|++.-.........++.++.|.++.|+++.- +...+..+|+++.|++..|.
T Consensus       163 ~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  163 PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             HHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            55566677889999999999987333333333477899999999998732 23345578899999998885

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=1.7e-09  Score=67.58  Aligned_cols=60  Identities=30%  Similarity=0.390  Sum_probs=52.0

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      |+|++|++++|.+..+.+..|.++++|++|++++|.++...+. .|..+ ++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l-~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-AFSNL-PNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT-TTTTS-TTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH-HHcCC-CCCCEEeCcCCc
Confidence            6899999999999988888999999999999999999865555 77787 888888887764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=8e-09  Score=64.53  Aligned_cols=61  Identities=33%  Similarity=0.489  Sum_probs=54.0

Q ss_pred             cCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681          101 WHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus       101 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                      ++|++|++++|++. .+|+..+..+++|++|++++|.+....+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999998 77877777799999999999999877778999999999999999875

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.71  E-value=5.1e-09  Score=84.10  Aligned_cols=41  Identities=29%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC
Q 048681          125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP  167 (266)
Q Consensus       125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  167 (266)
                      +..|+.+++++|.++ .+.+.+.-.|.+++|++++|.+. .+.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~  323 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ  323 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh
Confidence            668999999999997 77778888899999999999997 443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.59  E-value=1.8e-09  Score=95.82  Aligned_cols=175  Identities=27%  Similarity=0.279  Sum_probs=106.2

Q ss_pred             ChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch-hhhhc-----cCCCC---cc---e---ecccCcc
Q 048681           28 PWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL-VLVSM-----LHFPN---SF---T---ITMSWRP   92 (266)
Q Consensus        28 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~-----~~~~~---~~---~---~~~~~~~   92 (266)
                      |-.|..+..|+.|.+.+|++...  . ++..+-.+|++|.-.+.. ....+     ..+++   +.   +   ..+.+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--K-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--h-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence            66788899999999999998742  2 566665677777665554 11111     11111   11   1   1122233


Q ss_pred             cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccc
Q 048681           93 FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI  172 (266)
Q Consensus        93 l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  172 (266)
                      +..++.-++.++.|++++|+++ .+. .+.. ++.|++||+++|.+. .+|..-..-.+|..|.+++|-++. +- ++  
T Consensus       179 mD~SLqll~ale~LnLshNk~~-~v~-~Lr~-l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L~-gi--  250 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFT-KVD-NLRR-LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-LR-GI--  250 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhh-hhH-HHHh-cccccccccccchhc-cccccchhhhhheeeeecccHHHh-hh-hH--
Confidence            4455556677888888888887 443 4444 778888888888886 455433322347888888887762 21 11  


Q ss_pred             cccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC-ccccccccCCeeeccccccc
Q 048681          173 GCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP-PQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       173 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~  238 (266)
                                               .++++|+.||+++|.+.+--. ..+..+..|+.|+|.||++-
T Consensus       251 -------------------------e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  251 -------------------------ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             -------------------------HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence                                     125677777788777663211 12455677777888887766

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.52  E-value=1.7e-08  Score=87.97  Aligned_cols=197  Identities=24%  Similarity=0.255  Sum_probs=90.9

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      +..++.+.+..|.+.. .-..+..+++|+.|++.+|.|... .. .+..+ .+|++|++++|.+...             
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~-~l~~~-~~L~~L~ls~N~I~~i-------------  133 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-EN-LLSSL-VNLQVLDLSFNKITKL-------------  133 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-cc-chhhh-hcchheeccccccccc-------------
Confidence            3444444455555542 222344555556666666655532 11 13333 5555666655552110             


Q ss_pred             CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCcc-ccCCCCCCEEEccCCeeeecCCc
Q 048681           90 WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSS-IGDLNSLKFLDLSHNQLTGEIPK  168 (266)
Q Consensus        90 ~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~  168 (266)
                           .++..++.|+.|++++|.+. .+. .+.. +.+|+.+++++|.+... ... ...+.+++.+.+..|.+. .+..
T Consensus       134 -----~~l~~l~~L~~L~l~~N~i~-~~~-~~~~-l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i~-~i~~  203 (414)
T KOG0531|consen  134 -----EGLSTLTLLKELNLSGNLIS-DIS-GLES-LKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSIR-EIEG  203 (414)
T ss_pred             -----cchhhccchhhheeccCcch-hcc-CCcc-chhhhcccCCcchhhhh-hhhhhhhccchHHHhccCCchh-cccc
Confidence                 01223344666666666665 222 1211 55666666666666522 221 345566666666666554 2211


Q ss_pred             cccccccchhHHHhhhcccccccccCCCCcCCC--CccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLN--KMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      .  ..+..+..+.+..+..........    ..  .|+.+++.+|.+. .++..+..+..+..+++..|++...
T Consensus       204 ~--~~~~~l~~~~l~~n~i~~~~~l~~----~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  204 L--DLLKKLVLLSLLDNKISKLEGLNE----LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             h--HHHHHHHHhhcccccceeccCccc----chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc
Confidence            0  111111111222222221111111    11  2667777777766 4434456666677777777766633

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=8.6e-10  Score=88.27  Aligned_cols=135  Identities=20%  Similarity=0.183  Sum_probs=87.3

Q ss_pred             CCcEEECCCccCccC-CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           12 NLQELHMGANDLRGT-LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      .|+.+|++...|+.. +...+..+.+|+.|.+.++++.+.+.. .+.+. .+|+.|+++.+.....              
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN-~~L~~lnlsm~sG~t~--------------  249 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKN-SNLVRLNLSMCSGFTE--------------  249 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhcc-ccceeeccccccccch--------------
Confidence            367778887777643 233345678888888888888766665 67777 7888888877763221              


Q ss_pred             cccccCcccccCccEEEccCccccccC-CccccccCCCCcEEEccccccc---ccCCccccCCCCCCEEEccCCee
Q 048681           91 RPFRMPIQSHWHLATLYVSKKFFQGNI-PLEIGVYFPRLMYLNLSRNEFD---GSIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                      +.+..-+.++..|++|++++|...... ...+..--++|+.|+++++.-.   +.+.-....++++..||+++|-.
T Consensus       250 n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~  325 (419)
T KOG2120|consen  250 NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM  325 (419)
T ss_pred             hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence            122233567788999999998876322 1112222457888899888652   12222345788999999988753

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.38  E-value=3.1e-08  Score=78.57  Aligned_cols=142  Identities=20%  Similarity=0.154  Sum_probs=83.4

Q ss_pred             cccccCccEEEccCccccccCCcccc---ccCCCCcEEEcccccccccCCccc-------------cCCCCCCEEEccCC
Q 048681           97 IQSHWHLATLYVSKKFFQGNIPLEIG---VYFPRLMYLNLSRNEFDGSIPSSI-------------GDLNSLKFLDLSHN  160 (266)
Q Consensus        97 ~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~n  160 (266)
                      +-.+++|+.++++.|-+....|+.+.   +....|++|.+.+|.+.......+             ..-|.|+.+.++.|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            34567788888888888766665443   225578888888887752222211             24467888888888


Q ss_pred             eeeecCCccccc---cccchhHHHhhhcccccc--cccCC-CCcCCCCccEEEccCCccccc----CCccccccccCCee
Q 048681          161 QLTGEIPKHLAI---GCFNLEYLVESLMFTTKE--TSYSY-KGKPLNKMYGIDLSCNKLVGE----IPPQIGKLTRVRAL  230 (266)
Q Consensus       161 ~~~~~~~~~~~~---~~~~l~~l~~~~~~~~~~--~~~~~-~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L  230 (266)
                      ++.......+..   .-.+++.+.+..++....  ..+.+ ....+.+|+.||+++|.++-.    +..++..++.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            876322221211   112333333333332222  11111 112368999999999998733    22345567889999


Q ss_pred             eccccccc
Q 048681          231 NLSHNNLT  238 (266)
Q Consensus       231 ~l~~n~l~  238 (266)
                      .+..|-++
T Consensus       248 ~lnDClls  255 (388)
T COG5238         248 RLNDCLLS  255 (388)
T ss_pred             cccchhhc
Confidence            99999877

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.24  E-value=2.1e-06  Score=80.73  Aligned_cols=107  Identities=21%  Similarity=0.153  Sum_probs=50.0

Q ss_pred             CCCCcEEECCCcc--CccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681           10 LRNLQELHMGAND--LRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT   87 (266)
Q Consensus        10 l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~   87 (266)
                      .++|++|-+.+|.  +......-|..++.|+.||+++|.-.+..|+ .+..+ -.|++|+++++.+              
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~L-i~LryL~L~~t~I--------------  607 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGEL-VHLRYLDLSDTGI--------------  607 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhh-hhhhcccccCCCc--------------
Confidence            3345555555553  3322222234455555555555544444555 55555 5555555555443              


Q ss_pred             ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccc
Q 048681           88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN  136 (266)
Q Consensus        88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  136 (266)
                         ..+|.++.++.+|.+|++........+ +++...+.+|++|.+...
T Consensus       608 ---~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  608 ---SHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ---cccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence               334445555555555555544433222 222222555555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.23  E-value=5.1e-07  Score=84.81  Aligned_cols=135  Identities=23%  Similarity=0.283  Sum_probs=103.7

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc--ccccCCCCcchhhcccccccccccchhhhhccCCCC
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ--LTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPN   82 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~   82 (266)
                      +...+....+.+.+-++.+. ..+.+.. .+.|++|-+..|.  +. .++. .|+...+.|+.||+++|.          
T Consensus       517 ~~~~~~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~-~is~-~ff~~m~~LrVLDLs~~~----------  582 (889)
T KOG4658|consen  517 PQVKSWNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLL-EISG-EFFRSLPLLRVLDLSGNS----------  582 (889)
T ss_pred             ccccchhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhh-hcCH-HHHhhCcceEEEECCCCC----------
Confidence            34445566677777777766 3333333 4579999999986  44 4554 555544999999999864          


Q ss_pred             cceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681           83 SFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ  161 (266)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  161 (266)
                            +..++|..++.+.+|++|++++..+. ++|.++.. ++.|.+|++..+.....++.....+.+|++|.+....
T Consensus       583 ------~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  583 ------SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ------ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence                  34678999999999999999999998 99999887 8999999999988765667777779999999987754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=1.4e-06  Score=50.16  Aligned_cols=38  Identities=34%  Similarity=0.561  Sum_probs=32.3

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccc
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR   49 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~   49 (266)
                      ++|++|++++|.|+ .+|..|+++++|++|++++|.|++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            58999999999999 566679999999999999999983

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.19  E-value=1.3e-07  Score=82.42  Aligned_cols=210  Identities=28%  Similarity=0.292  Sum_probs=134.0

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      .+.++.++...+.+....-. ...+..++.+++..|.|+. +-. .+..+ .+|..+++..|.+.               
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~-~l~~~-~~l~~l~l~~n~i~---------------  108 (414)
T KOG0531|consen   48 PSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILN-HLSKL-KSLEALDLYDNKIE---------------  108 (414)
T ss_pred             cchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhc-ccccc-cceeeeeccccchh---------------
Confidence            44555566666655422211 1457788888899999874 222 45666 99999999998841               


Q ss_pred             CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681           90 WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH  169 (266)
Q Consensus        90 ~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  169 (266)
                        .+...+..+++|++|+++.|.++. +. .+. .++.|+.|++.+|.+.. + ..+..+.+|+.+++++|++. .+...
T Consensus       109 --~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~-~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~-~ie~~  180 (414)
T KOG0531|consen  109 --KIENLLSSLVNLQVLDLSFNKITK-LE-GLS-TLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIV-DIEND  180 (414)
T ss_pred             --hcccchhhhhcchheecccccccc-cc-chh-hccchhhheeccCcchh-c-cCCccchhhhcccCCcchhh-hhhhh
Confidence              122224668899999999999984 32 222 36779999999999963 2 34456899999999999997 44431


Q ss_pred             ccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccc--cCCeeeccccccccc---C---
Q 048681          170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLT--RVRALNLSHNNLTGV---I---  241 (266)
Q Consensus       170 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~l~~n~l~~~---~---  241 (266)
                      ....+.++..+.+..+..........    +..+..+++..|.++. +-. +....  +|+.+++.+|.+...   +   
T Consensus       181 ~~~~~~~l~~l~l~~n~i~~i~~~~~----~~~l~~~~l~~n~i~~-~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~  254 (414)
T KOG0531|consen  181 ELSELISLEELDLGGNSIREIEGLDL----LKKLVLLSLLDNKISK-LEG-LNELVMLHLRELYLSGNRISRSPEGLENL  254 (414)
T ss_pred             hhhhccchHHHhccCCchhcccchHH----HHHHHHhhccccccee-ccC-cccchhHHHHHHhcccCcccccccccccc
Confidence            02445566666555554443333222    3445555777777762 222 22233  388888888888754   1   


Q ss_pred             ---CeEEeeCCeee
Q 048681          242 ---PSLDVSYNNLN  252 (266)
Q Consensus       242 ---~~l~l~~n~i~  252 (266)
                         +.+++..|++.
T Consensus       255 ~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  255 KNLPVLDLSSNRIS  268 (414)
T ss_pred             ccccccchhhcccc
Confidence               26777777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=1.3e-06  Score=50.34  Aligned_cols=39  Identities=31%  Similarity=0.685  Sum_probs=32.9

Q ss_pred             CCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          201 NKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       201 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      ++|++|++++|.|+ .+|..++++++|+.|++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            46899999999999 6787799999999999999998843

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.11  E-value=7.4e-07  Score=70.92  Aligned_cols=130  Identities=19%  Similarity=0.153  Sum_probs=78.5

Q ss_pred             ccccCCCCCcEEECCCccCccCCChh----hhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCC
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWC----LENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF   80 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~   80 (266)
                      +++..||+|+.+++|.|.+....|..    +++.+.|++|.+++|.+. .+....+++.   |.+|-.  |.        
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigka---l~~la~--nK--------  151 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKA---LFHLAY--NK--------  151 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHH---HHHHHH--Hh--------
Confidence            35567888888888888888776654    346788888888888764 3333234332   222211  11        


Q ss_pred             CCcceecccCcccccCcccccCccEEEccCccccccCCccc----cccCCCCcEEEcccccccccC-----CccccCCCC
Q 048681           81 PNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI----GVYFPRLMYLNLSRNEFDGSI-----PSSIGDLNS  151 (266)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~-----~~~l~~l~~  151 (266)
                                     -..+.+.|+.+....|++. ..+...    .....+|+++.+.+|.|....     -..+..+.+
T Consensus       152 ---------------Kaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~  215 (388)
T COG5238         152 ---------------KAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHS  215 (388)
T ss_pred             ---------------hhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCc
Confidence                           1234567777777777765 222221    122357788888887775221     123445677


Q ss_pred             CCEEEccCCeeee
Q 048681          152 LKFLDLSHNQLTG  164 (266)
Q Consensus       152 L~~L~l~~n~~~~  164 (266)
                      |+.|++..|.++.
T Consensus       216 LevLDlqDNtft~  228 (388)
T COG5238         216 LEVLDLQDNTFTL  228 (388)
T ss_pred             ceeeeccccchhh
Confidence            8888888877764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=1.2e-07  Score=67.80  Aligned_cols=69  Identities=28%  Similarity=0.531  Sum_probs=58.3

Q ss_pred             ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681          100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA  171 (266)
Q Consensus       100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  171 (266)
                      ...|+.+++++|.+. .+|+.+...++-++.+++..|.++ ..|..+..++.|+.++++.|.+. ..|+.++
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~  120 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIA  120 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHH
Confidence            356778899999997 778877776788999999999997 78888999999999999999997 5666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=1.2e-06  Score=70.69  Aligned_cols=202  Identities=15%  Similarity=0.096  Sum_probs=87.9

Q ss_pred             CCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC----Ccce-----ecccCcccccCcccccCcc
Q 048681           34 ITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP----NSFT-----ITMSWRPFRMPIQSHWHLA  104 (266)
Q Consensus        34 l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~----~~~~-----~~~~~~~l~~~~~~~~~L~  104 (266)
                      ++.++.+||.+|.|.+=..-.++.+.++.|++|+++.|+....+...|    ++.+     ...+|........++++++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            455555666666554311000222223555566666555433333332    1111     2345566666677778888


Q ss_pred             EEEccCcccccc-CCcc-ccccCCCCcEEEccccccccc--CCccccCCCCCCEEEccCCeeeecCCccccccccchhHH
Q 048681          105 TLYVSKKFFQGN-IPLE-IGVYFPRLMYLNLSRNEFDGS--IPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL  180 (266)
Q Consensus       105 ~L~l~~n~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l  180 (266)
                      +|.++.|.+... +.+. ....-+.+.++...+|.....  .-......+++..+-+..|.+.+.-.+.-+..++.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            887777754311 1111 111122344444444443210  111112334555555555544422222222223333333


Q ss_pred             HhhhcccccccccCCCCcCCCCccEEEccCCcccccCC----c--cccccccCCeeeccccccc
Q 048681          181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP----P--QIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~--~~~~l~~L~~L~l~~n~l~  238 (266)
                      .+..+............ .++.|..|-+.++.+.+.+.    .  .++.+++++.|+  |.+++
T Consensus       230 nL~~~~idswasvD~Ln-~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN--GskIs  290 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALN-GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN--GSKIS  290 (418)
T ss_pred             hhcccccccHHHHHHHc-CCchhheeeccCCcccccccCCcceEEEEeeccceEEec--Ccccc
Confidence            33333333332222221 26667777777666543211    1  245566666643  44555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=1.3e-06  Score=70.44  Aligned_cols=195  Identities=17%  Similarity=0.215  Sum_probs=115.6

Q ss_pred             cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCcc
Q 048681           33 NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF  112 (266)
Q Consensus        33 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~  112 (266)
                      ....++-+.+-++.|........|...++.++.+|+.+|.+              ..|.++-.-..+++.|+.|+++.|.
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i--------------SdWseI~~ile~lP~l~~LNls~N~  108 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI--------------SDWSEIGAILEQLPALTTLNLSCNS  108 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh--------------ccHHHHHHHHhcCccceEeeccCCc
Confidence            34455667777777764433335666678999999999874              3344444456788999999999999


Q ss_pred             ccccCCccccccCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCee---ee--cCCcccc--------ccccchh
Q 048681          113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGS-IPSSIGDLNSLKFLDLSHNQL---TG--EIPKHLA--------IGCFNLE  178 (266)
Q Consensus       113 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~---~~--~~~~~~~--------~~~~~l~  178 (266)
                      +...+... .....+|++|-+.+..+... ....+..+|.++.|.|+.|.+   ..  ...+.+.        ..|....
T Consensus       109 L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~  187 (418)
T KOG2982|consen  109 LSSDIKSL-PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL  187 (418)
T ss_pred             CCCccccC-cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH
Confidence            87432211 12267899999988887633 334566788888999988833   21  0111111        1222222


Q ss_pred             HHHhh---hccc---------cc--ccccCCCCcCCCCccEEEccCCccccc-CCccccccccCCeeecccccccccCC
Q 048681          179 YLVES---LMFT---------TK--ETSYSYKGKPLNKMYGIDLSCNKLVGE-IPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       179 ~l~~~---~~~~---------~~--~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      ++..-   +...         +.  ...-.....+++.+..|.|+.+.|... ..+++.++++|+-|.+.++++.+.+.
T Consensus       188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            21110   0000         00  111122233456666777888777632 44567778888888888888776544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=5.1e-08  Score=78.32  Aligned_cols=139  Identities=20%  Similarity=0.059  Sum_probs=74.8

Q ss_pred             cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccC--CccccCCCCCCEEEccCCeeeec-CCcccccc
Q 048681           97 IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSI--PSSIGDLNSLKFLDLSHNQLTGE-IPKHLAIG  173 (266)
Q Consensus        97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~  173 (266)
                      ++.+.+|+.|.+.++++.+.+...+.. -.+|+.++++.|.--...  .-.+..++.|..|++++|.+... +...+..-
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi  284 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI  284 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence            445566777777777776665555555 457777777766431111  12345667777777777765432 12222223


Q ss_pred             ccchhHHHhhhcccccc-cccCCCCcCCCCccEEEccCCc-ccccCCccccccccCCeeeccccc
Q 048681          174 CFNLEYLVESLMFTTKE-TSYSYKGKPLNKMYGIDLSCNK-LVGEIPPQIGKLTRVRALNLSHNN  236 (266)
Q Consensus       174 ~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~  236 (266)
                      -.++..|.++.+..+-. .+.......++.|..|||++|. ++...-..|.+++.|++|+++.|.
T Consensus       285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            34555555544332211 1222222346777777777764 332222345666777777776665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.91  E-value=1.3e-07  Score=84.41  Aligned_cols=117  Identities=26%  Similarity=0.215  Sum_probs=80.1

Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccE
Q 048681          126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYG  205 (266)
Q Consensus       126 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~  205 (266)
                      ..|.+.+.++|.+. .+...+.-++.+++|++++|++. .+.  ....+.++++||+.++.....+.+...+  + .|..
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~g--c-~L~~  236 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVG--C-KLQL  236 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhh--h-hhee
Confidence            35666777777765 45556666677777777777776 332  3356667777777666655554444333  2 3889


Q ss_pred             EEccCCcccccCCccccccccCCeeecccccccccCC-----------eEEeeCCee
Q 048681          206 IDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-----------SLDVSYNNL  251 (266)
Q Consensus       206 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~l~l~~n~i  251 (266)
                      |.+.+|.++. +- .+.++++|..||++.|-+.+--+           .|+|.+|++
T Consensus       237 L~lrnN~l~t-L~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  237 LNLRNNALTT-LR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eeecccHHHh-hh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            9999998883 33 37889999999999998885433           788888876

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=7e-05  Score=64.11  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=37.6

Q ss_pred             cCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681            8 FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         8 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ..+++++.|++++|.++ .+|. +  -.+|++|.+++|.-...+|. .   ++.+|+.|++++|.
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~-~---LP~nLe~L~Ls~Cs  105 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPG-S---IPEGLEKLTVCHCP  105 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCc-h---hhhhhhheEccCcc
Confidence            34678888888888777 4452 2  24688888887654334554 2   34678888888764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.75  E-value=6.9e-05  Score=57.30  Aligned_cols=56  Identities=25%  Similarity=0.267  Sum_probs=29.9

Q ss_pred             CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccc
Q 048681           12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNY   71 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~   71 (266)
                      ....+|+++|.+..  -+.|..++.|.+|.+.+|+|+...|  .+..+.++|+.|.+.+|
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p--~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDP--DLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeecc--chhhhccccceEEecCc
Confidence            34456666666652  2345566667777777777764333  34444344444443333

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.74  E-value=2.3e-06  Score=61.25  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=16.7

Q ss_pred             CCCccEEEccCCcccccCCccccccccCCeeeccccc
Q 048681          200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN  236 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  236 (266)
                      ++.|+.+.++.|.+. ..|..+..+.++..|+..+|-
T Consensus        99 m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   99 MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            344444555555544 334444444444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.67  E-value=5.2e-05  Score=57.94  Aligned_cols=105  Identities=20%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             CccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHH
Q 048681          102 HLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV  181 (266)
Q Consensus       102 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~  181 (266)
                      ....+++++|.+. .++ .+. .++.|++|.+.+|.++...|.--..+++|+.|.+.+|++. .+               
T Consensus        43 ~~d~iDLtdNdl~-~l~-~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l---------------  103 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD-NLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-EL---------------  103 (233)
T ss_pred             ccceecccccchh-hcc-cCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchh-hh---------------
Confidence            4556667776665 322 222 2667777777777776444444445566777777776654 11               


Q ss_pred             hhhcccccccccCCCCcCCCCccEEEccCCcccccCCc----cccccccCCeeeccccc
Q 048681          182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP----QIGKLTRVRALNLSHNN  236 (266)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~l~~n~  236 (266)
                               ..+.... .+++|++|.+-+|.++.. ..    .+..+++|+.||+++=+
T Consensus       104 ---------~dl~pLa-~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  104 ---------GDLDPLA-SCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ---------hhcchhc-cCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhhhh
Confidence                     1111111 267899999999988732 22    34668899998886543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.44  E-value=2.3e-05  Score=72.05  Aligned_cols=151  Identities=21%  Similarity=0.202  Sum_probs=73.6

Q ss_pred             CCCcEEECCCccCc-cCCChhhh-cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681           11 RNLQELHMGANDLR-GTLPWCLE-NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM   88 (266)
Q Consensus        11 ~~L~~L~l~~n~i~-~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~   88 (266)
                      .+|+.|+++|...- ..-|..++ -+|+|++|.+++=.+...-=. .+.+-+++|..||++++.+..             
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~n-------------  187 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISN-------------  187 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccC-------------
Confidence            34556666654322 11222333 356666666666544321000 122223566666666655210             


Q ss_pred             cCcccccCcccccCccEEEccCcccccc-CCccccccCCCCcEEEccccccccc------CCccccCCCCCCEEEccCCe
Q 048681           89 SWRPFRMPIQSHWHLATLYVSKKFFQGN-IPLEIGVYFPRLMYLNLSRNEFDGS------IPSSIGDLNSLKFLDLSHNQ  161 (266)
Q Consensus        89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~l~~l~~L~~L~l~~n~  161 (266)
                          + .+++++++|+.|.+.+-.+... .-..++. +++|++||++.......      ..+....+|.|++||++++.
T Consensus       188 ----l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  188 ----L-SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             ----c-HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence                1 2345666666666665444311 1123444 67777777776654311      11122346788888888877


Q ss_pred             eeecCCccccccccchhHHH
Q 048681          162 LTGEIPKHLAIGCFNLEYLV  181 (266)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~l~  181 (266)
                      +....-+.+...-++++.+.
T Consensus       262 i~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  262 INEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             hhHHHHHHHHHhCccHhhhh
Confidence            66444344433344444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.34  E-value=7.1e-05  Score=68.93  Aligned_cols=63  Identities=22%  Similarity=0.312  Sum_probs=35.0

Q ss_pred             cccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681           99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus        99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                      .+|.|+.|.+.+-.+...--..++..+++|..||+++++++..  ..+..+++|+.|.|.+=.+.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e  208 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFE  208 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCC
Confidence            3566777766664443111112334466777777777766522  45566666666666654443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.27  E-value=0.00087  Score=57.57  Aligned_cols=34  Identities=9%  Similarity=0.011  Sum_probs=25.4

Q ss_pred             cCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681           33 NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus        33 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      .+.+++.|++++|.++ .+|     .++.+|+.|++.++.
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP-----~LP~sLtsL~Lsnc~   83 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLP-----VLPNELTEITIENCN   83 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccC-----CCCCCCcEEEccCCC
Confidence            4788999999999877 344     355678888887754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.23  E-value=0.0013  Score=47.33  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=21.8

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCC
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLN   45 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n   45 (266)
                      ..|.++.+|+.+.+.. .+..+...+|.++.+|+.+.+..+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~   45 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN   45 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc
Confidence            3566777777777764 455566667777777777777664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.00014  Score=58.46  Aligned_cols=101  Identities=22%  Similarity=0.192  Sum_probs=61.4

Q ss_pred             ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhH
Q 048681          100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY  179 (266)
Q Consensus       100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~  179 (266)
                      +.+.+.|++.+|++.+   -.++..++.|++|.|+-|.++.  ...+..|++|++|++..|.+.                
T Consensus        18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~----------------   76 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE----------------   76 (388)
T ss_pred             HHHhhhhcccCCCccH---HHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc----------------
Confidence            4455666666666652   1334446666666666666652  234456666666666666665                


Q ss_pred             HHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCc-----cccccccCCeee
Q 048681          180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP-----QIGKLTRVRALN  231 (266)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~  231 (266)
                               ++.++... ..+++|+.|.|..|..++..+.     .+.-+++|+.||
T Consensus        77 ---------sldEL~YL-knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   77 ---------SLDELEYL-KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ---------cHHHHHHH-hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence                     22222111 1378999999999988766443     356788999876

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=4.6e-05  Score=61.12  Aligned_cols=59  Identities=31%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             ccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCc-----cccCCCCCCEEE
Q 048681           98 QSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPS-----SIGDLNSLKFLD  156 (266)
Q Consensus        98 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~  156 (266)
                      .++++|++|++..|.+.+.-.-.....+++|..|+|..|...+.-+.     ++..+|+|+.||
T Consensus        60 ~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   60 QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            34455666666666655221112223366666666666665433222     344556666555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.00094  Score=53.13  Aligned_cols=69  Identities=26%  Similarity=0.380  Sum_probs=40.4

Q ss_pred             CCccccCCCCCcEEECCCc--cCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681            3 SISGLFRLRNLQELHMGAN--DLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         3 ~~~~~~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ...+|..+++|++|.++.|  ++.+.++--...+++|+++++++|+|.....-.....+ .+|..|++..|.
T Consensus        57 t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l-~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   57 TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL-ENLKSLDLFNCS  127 (260)
T ss_pred             ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh-cchhhhhcccCC
Confidence            3456667777777777777  55544444444567777778777777631111123333 555566665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.62  E-value=0.0013  Score=52.40  Aligned_cols=62  Identities=26%  Similarity=0.327  Sum_probs=37.4

Q ss_pred             cccCccEEEccCccccccCCccccccCCCCcEEEcccc--cccccCCccccCCCCCCEEEccCCeee
Q 048681           99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN--EFDGSIPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus        99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                      .+..|+.+.+.+..++ .+- .+. .+++|++|.++.|  .+...+......+++|++++++.|++.
T Consensus        41 ~~~~le~ls~~n~glt-t~~-~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   41 EFVELELLSVINVGLT-TLT-NFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccchhhhhhhcccee-ecc-cCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3455666666666665 222 122 2678888888887  333334333445588888888888775

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.43  E-value=3.5e-05  Score=64.94  Aligned_cols=64  Identities=19%  Similarity=0.134  Sum_probs=26.5

Q ss_pred             CCCCCCEEEccCCe-eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCC
Q 048681          148 DLNSLKFLDLSHNQ-LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCN  211 (266)
Q Consensus       148 ~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n  211 (266)
                      ...+|+++-+..|+ +++.-...+...+..+..++.-.++......+.....+++.|+.+.+++|
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc  382 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC  382 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence            33555555555553 22111122233444444444444433333333333334444555555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.38  E-value=7e-05  Score=63.18  Aligned_cols=231  Identities=15%  Similarity=0.045  Sum_probs=124.2

Q ss_pred             cCCCCCcEEECCCc-cCccCCChhhh-cCCCCcEEeccCC-cccccCCCCcchhhcccccccccccchhhhh------cc
Q 048681            8 FRLRNLQELHMGAN-DLRGTLPWCLE-NITSLKVLDLYLN-QLTRNISSSPLLHLITSIEYLSTLNYLVLVS------ML   78 (266)
Q Consensus         8 ~~l~~L~~L~l~~n-~i~~~~~~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~------~~   78 (266)
                      .++|+++.|.+.+| .++...-.+++ .+.+|+.+++..| .+|+..-. .+.+-|++|++|+++++....+      .-
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~gC~kL~~lNlSwc~qi~~~gv~~~~r  239 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK-YLAEGCRKLKYLNLSWCPQISGNGVQALQR  239 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH-HHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence            46677777777776 33333333333 4677777777774 35543333 3445568888888888772221      01


Q ss_pred             CCCC---ccee------------------------cccCccccc-----CcccccCccEEEccCcccccc-CCccccccC
Q 048681           79 HFPN---SFTI------------------------TMSWRPFRM-----PIQSHWHLATLYVSKKFFQGN-IPLEIGVYF  125 (266)
Q Consensus        79 ~~~~---~~~~------------------------~~~~~~l~~-----~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~  125 (266)
                      +...   +...                        ..++..+.+     .-....+|+.++.+++...+. +-..+....
T Consensus       240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~  319 (483)
T KOG4341|consen  240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC  319 (483)
T ss_pred             cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence            1111   0000                        000111111     111245677777776554322 223344546


Q ss_pred             CCCcEEEccccccccc--CCccccCCCCCCEEEccCCeeeecC-CccccccccchhHHHhhhcccccc---cccCCCCcC
Q 048681          126 PRLMYLNLSRNEFDGS--IPSSIGDLNSLKFLDLSHNQLTGEI-PKHLAIGCFNLEYLVESLMFTTKE---TSYSYKGKP  199 (266)
Q Consensus       126 ~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~  199 (266)
                      .+|+.+-+.+|+--+.  +...-..++.|+.+++..+...... -......++.++.+.++.+.....   .........
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            6888888888874211  1122236678888888877654222 234446777888777774433211   222332234


Q ss_pred             CCCccEEEccCCccc-ccCCccccccccCCeeeccccc-ccc
Q 048681          200 LNKMYGIDLSCNKLV-GEIPPQIGKLTRVRALNLSHNN-LTG  239 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~-l~~  239 (266)
                      +..|+.+.|.++... +.....+..+++|+.+++..+. ++.
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence            677788888887643 3344456777888888887763 443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.26  E-value=0.0079  Score=43.10  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=29.6

Q ss_pred             cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681           97 IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH  159 (266)
Q Consensus        97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  159 (266)
                      +..+.+|+.+.+.. .+. .++...+....+++.+.+..+ +.......+..+++++.+.+..
T Consensus         8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            45556677777664 344 555555555557777777664 4433445566666677777754

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.66  E-value=0.0037  Score=29.92  Aligned_cols=16  Identities=56%  Similarity=0.605  Sum_probs=8.6

Q ss_pred             CcEEeccCCcccccCCC
Q 048681           37 LKVLDLYLNQLTRNISS   53 (266)
Q Consensus        37 L~~L~l~~n~i~~~~~~   53 (266)
                      |++||+++|+++ .+|.
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            455555555555 4444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.60  E-value=0.0064  Score=29.06  Aligned_cols=18  Identities=39%  Similarity=0.553  Sum_probs=9.4

Q ss_pred             ccEEEccCCcccccCCccc
Q 048681          203 MYGIDLSCNKLVGEIPPQI  221 (266)
Q Consensus       203 L~~L~L~~n~i~~~~~~~~  221 (266)
                      |++||+++|.++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.58  E-value=0.0018  Score=57.46  Aligned_cols=30  Identities=10%  Similarity=0.051  Sum_probs=16.0

Q ss_pred             cCCCCccEEEccCCcccccC-CccccccccC
Q 048681          198 KPLNKMYGIDLSCNKLVGEI-PPQIGKLTRV  227 (266)
Q Consensus       198 ~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L  227 (266)
                      ..++.++.+.+.++...... ...+.+++.|
T Consensus       359 ~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             hcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            34677777777776633221 1334555555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.15  E-value=0.0073  Score=53.52  Aligned_cols=201  Identities=22%  Similarity=0.127  Sum_probs=104.9

Q ss_pred             ccCCCCCcEEECCCc-cCccCCC----hhhhcCCCCcEEeccCCc-ccccCCCCcchhhcccccccccccchhhhhccCC
Q 048681            7 LFRLRNLQELHMGAN-DLRGTLP----WCLENITSLKVLDLYLNQ-LTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF   80 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n-~i~~~~~----~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~   80 (266)
                      ...+++|++|+++++ ......+    .....+.+|+.|+++.+. +++..-. .+...+++|++|.+.++....+    
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-~l~~~c~~L~~L~l~~c~~lt~----  284 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-ALASRCPNLETLSLSNCSNLTD----  284 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-HHHhhCCCcceEccCCCCccch----
Confidence            357899999999873 2211111    223356889999999988 6644333 4444457899998665552111    


Q ss_pred             CCcceecccCcccccCcccccCccEEEccCccccc-c-CCccccccCCCCcEEEccccc----cc-------------cc
Q 048681           81 PNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG-N-IPLEIGVYFPRLMYLNLSRNE----FD-------------GS  141 (266)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~-~-~~~~~~~~~~~L~~L~l~~~~----~~-------------~~  141 (266)
                                ..+-.....++.|++|+++++.... . +... ....++++.+.+....    ++             ..
T Consensus       285 ----------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~  353 (482)
T KOG1947|consen  285 ----------EGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDL  353 (482)
T ss_pred             ----------hHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhH
Confidence                      1111123456679999998877541 1 2222 2235555554433332    11             00


Q ss_pred             CCccccCCCCCCEEEccCCeeeecCC-ccccccccch-hHHHhhhcccccccccCCCCcCCCCccEEEccCCccc-ccCC
Q 048681          142 IPSSIGDLNSLKFLDLSHNQLTGEIP-KHLAIGCFNL-EYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV-GEIP  218 (266)
Q Consensus       142 ~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~  218 (266)
                      ..-....++.++.+.+..+... ... .....+|..+ ..+......             ...++.|+++.+... ....
T Consensus       354 ~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~~~l~~~~~~-------------~~~l~~L~l~~~~~~t~~~l  419 (482)
T KOG1947|consen  354 AELILRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNLTESLELRLCR-------------SDSLRVLNLSDCRLVTDKGL  419 (482)
T ss_pred             hHHHHhcCCCcchhhhhhhhcc-CcchHHHhcCCcccchHHHHHhcc-------------CCccceEecccCccccccch
Confidence            1112345566777777766633 222 3444555555 222222111             222778888877643 2222


Q ss_pred             ccccc-cccCCeeecccccc
Q 048681          219 PQIGK-LTRVRALNLSHNNL  237 (266)
Q Consensus       219 ~~~~~-l~~L~~L~l~~n~l  237 (266)
                      ..... +..++.+++.++..
T Consensus       420 ~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  420 RCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             HHHhhhhhccccCCccCccc
Confidence            22222 55667777777653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.13  E-value=0.031  Score=24.81  Aligned_cols=13  Identities=54%  Similarity=0.697  Sum_probs=5.9

Q ss_pred             CCcEEeccCCccc
Q 048681           36 SLKVLDLYLNQLT   48 (266)
Q Consensus        36 ~L~~L~l~~n~i~   48 (266)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666554

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.73  E-value=0.062  Score=26.63  Aligned_cols=16  Identities=38%  Similarity=0.561  Sum_probs=7.8

Q ss_pred             CCCcEEECCCccCccC
Q 048681           11 RNLQELHMGANDLRGT   26 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~   26 (266)
                      ++|++|++++|.+...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.73  E-value=0.062  Score=26.63  Aligned_cols=16  Identities=38%  Similarity=0.561  Sum_probs=7.8

Q ss_pred             CCCcEEECCCccCccC
Q 048681           11 RNLQELHMGANDLRGT   26 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~   26 (266)
                      ++|++|++++|.+...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555533

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.24  E-value=0.00037  Score=61.57  Aligned_cols=187  Identities=23%  Similarity=0.205  Sum_probs=93.6

Q ss_pred             CcEEECCCccCccCCCh----hhhcCCCCcEEeccCCcccccCCCCcchhhccc-------ccccccccchhhhhccCCC
Q 048681           13 LQELHMGANDLRGTLPW----CLENITSLKVLDLYLNQLTRNISSSPLLHLITS-------IEYLSTLNYLVLVSMLHFP   81 (266)
Q Consensus        13 L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~-------L~~L~~~~~~~~~~~~~~~   81 (266)
                      +..+.+.+|.+......    .+...+.|+.|++++|.+.+.    +...++..       +++|++..|..        
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~----g~~~l~~~l~~~~~~l~~L~l~~c~l--------  156 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE----GARLLCEGLRLPQCLLQTLELVSCSL--------  156 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH----hHHHHHhhcccchHHHHHHHhhcccc--------
Confidence            66778888888765333    344578899999999988742    22222222       22333333321        


Q ss_pred             CcceecccCcccccCcccccCccEEEccCccccc----cCCccccc---cCCCCcEEEccccccccc----CCccccCCC
Q 048681           82 NSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG----NIPLEIGV---YFPRLMYLNLSRNEFDGS----IPSSIGDLN  150 (266)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~---~~~~L~~L~l~~~~~~~~----~~~~l~~l~  150 (266)
                          ..-....+...+.....++.++++.|.+..    .++..+..   ....+++|.+.+|.++..    ....+...+
T Consensus       157 ----~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~  232 (478)
T KOG4308|consen  157 ----TSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE  232 (478)
T ss_pred             ----cccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence                001112223334445566666666666531    01111111   244566666666665421    112233333


Q ss_pred             C-CCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCC-CCccEEEccCCcccccCC----cccccc
Q 048681          151 S-LKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPL-NKMYGIDLSCNKLVGEIP----PQIGKL  224 (266)
Q Consensus       151 ~-L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~----~~~~~l  224 (266)
                      + +..+++.+|++.+.......                       .....+ ..++.+++.+|.+++...    ..+..+
T Consensus       233 ~~~~el~l~~n~l~d~g~~~L~-----------------------~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~  289 (478)
T KOG4308|consen  233 SLLRELDLASNKLGDVGVEKLL-----------------------PCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSC  289 (478)
T ss_pred             hhhHHHHHHhcCcchHHHHHHH-----------------------HHhcccchhhhhhhhhcCCccccchHHHHHHHhhh
Confidence            3 44466666655532111111                       111112 466777777777764422    334555


Q ss_pred             ccCCeeeccccccc
Q 048681          225 TRVRALNLSHNNLT  238 (266)
Q Consensus       225 ~~L~~L~l~~n~l~  238 (266)
                      ++++++.++.|++.
T Consensus       290 ~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  290 RQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHhhcccCccc
Confidence            67777777777766

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.72  E-value=0.038  Score=26.85  Aligned_cols=15  Identities=47%  Similarity=0.567  Sum_probs=7.6

Q ss_pred             CCCcEEeccCCcccc
Q 048681           35 TSLKVLDLYLNQLTR   49 (266)
Q Consensus        35 ~~L~~L~l~~n~i~~   49 (266)
                      ++|++|++++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            456666666666553

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.69  E-value=0.045  Score=42.22  Aligned_cols=86  Identities=19%  Similarity=0.135  Sum_probs=58.3

Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccE
Q 048681          126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYG  205 (266)
Q Consensus       126 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~  205 (266)
                      ..++.++-+++.+......-+..++.++.+.+.+|+.-+    .+.                     +.......++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d----D~~---------------------L~~l~~~~~~L~~  155 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD----DWC---------------------LERLGGLAPSLQD  155 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh----hHH---------------------HHHhcccccchhe
Confidence            367888888888765555667777888888887775432    110                     0111113689999


Q ss_pred             EEccCCc-ccccCCccccccccCCeeeccccc
Q 048681          206 IDLSCNK-LVGEIPPQIGKLTRVRALNLSHNN  236 (266)
Q Consensus       206 L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~  236 (266)
                      |++++|. |++.....+..+++|+.|.+.+=+
T Consensus       156 L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  156 LDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             eeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            9999884 776556667888889888876643

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.25  E-value=1.1  Score=22.35  Aligned_cols=15  Identities=40%  Similarity=0.598  Sum_probs=12.3

Q ss_pred             CCCCcEEeccCCccc
Q 048681           34 ITSLKVLDLYLNQLT   48 (266)
Q Consensus        34 l~~L~~L~l~~n~i~   48 (266)
                      +.+|+.|+++.|.|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            467888999999886

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.07  E-value=0.1  Score=41.43  Aligned_cols=47  Identities=21%  Similarity=0.188  Sum_probs=30.2

Q ss_pred             CccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681           23 LRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus        23 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ++.+....++.+...+.||++.|+... ... -|..+ +.+..|+++.++
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn-~~~-n~s~~-t~~~rl~~sknq   76 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVN-LGK-NFSIL-TRLVRLDLSKNQ   76 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHh-hcc-chHHH-HHHHHHhccHhh
Confidence            333445566777777778888777653 333 45555 777777777776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-14
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-08
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-14
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-07

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 124/307 (40%), Gaps = 72/307 (23%)
Query: 13  LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72
           L  LH+  N L GT+P  L +++ L+ L L+LN L   I           + Y+ TL  L
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE--------LMYVKTLETL 471
Query: 73  VLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLN 132
           +L         F       P  +   +  +L  + +S     G IP  IG     L  L 
Sbjct: 472 IL--------DFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILK 520
Query: 133 LSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL---------------------- 170
           LS N F G+IP+ +GD  SL +LDL+ N   G IP  +                      
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 171 ---AIGCFNLEYLVESLMFTTKETSYSYKGKPLN---KMYG---------------IDLS 209
                 C     L+E     +++ +      P N   ++YG               +D+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 210 CNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQL 259
            N L G IP +IG +  +  LNL HN+++G IP           LD+S N L+G+IP  +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 260 VELNALA 266
             L  L 
Sbjct: 701 SALTMLT 707

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFT 187
           +M+L++S N   G IP  IG +  L  L+L HN ++G IP  +                 
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG---------------- 677
Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSL 244
                       L  +  +DLS NKL G IP  +  LT +  ++LS+NNL+G IP +
Sbjct: 678 -----------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 124/307 (40%), Gaps = 72/307 (23%)
Query: 13  LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL 72
           L  LH+  N L GT+P  L +++ L+ L L+LN L   I           + Y+ TL  L
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE--------LMYVKTLETL 468
Query: 73  VLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLN 132
           +L         F       P  +   +  +L  + +S     G IP  IG     L  L 
Sbjct: 469 IL--------DFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILK 517
Query: 133 LSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP------------------------- 167
           LS N F G+IP+ +GD  SL +LDL+ N   G IP                         
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLN---KMYG---------------IDLS 209
             +   C     L+E     +++ +      P N   ++YG               +D+S
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 210 CNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQL 259
            N L G IP +IG +  +  LNL HN+++G IP           LD+S N L+G+IP  +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 260 VELNALA 266
             L  L 
Sbjct: 698 SALTMLT 704

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFT 187
           +M+L++S N   G IP  IG +  L  L+L HN ++G IP  +                 
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG---------------- 674
Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSL 244
                       L  +  +DLS NKL G IP  +  LT +  ++LS+NNL+G IP +
Sbjct: 675 -----------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 26/240 (10%)
Query: 5   SGLFRLRNLQELHMGA-NDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI 63
           S L  L  L  L++G  N+L G +P  +  +T L  L      +T    S  +   ++ I
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL-----YITHTNVSGAIPDFLSQI 124
Query: 64  EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV 123
           + L TL++         P S             I S  +L  +        G IP   G 
Sbjct: 125 KTLVTLDFSYNALSGTLPPS-------------ISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES 183
           +      + +SRN   G IP +  +LN L F+DLS N L G+     A   F  +   + 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-----ASVLFGSDKNTQK 225
Query: 184 LMFTTKETSYSYKGKPLNK-MYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242
           +       ++      L+K + G+DL  N++ G +P  + +L  + +LN+S NNL G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 42/161 (26%)
Query: 118 PLEIGVYFPRLMYLNL----SRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG 173
           P  I      L YLN       N   G IP +I  L  L +L ++H  ++G IP  L+  
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-- 122
Query: 174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS 233
              ++ LV                        +D S N L G +PP I  L  +  +   
Sbjct: 123 --QIKTLVT-----------------------LDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 234 HNNLTGVIP-----------SLDVSYNNLNGKIPPQLVELN 263
            N ++G IP           S+ +S N L GKIPP    LN
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  150 bits (382), Expect = 1e-41
 Identities = 68/304 (22%), Positives = 104/304 (34%), Gaps = 85/304 (27%)

Query: 1   MNSISG-----LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSP 55
           +N + G     L  ++ L+ L +  NDL G +P  L N T+L  + L  N+LT  I    
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW- 509

Query: 56  LLHLITSIEYLSTLNYLVLVSMLHFPNSFT--ITMSWRPFRMPIQSHWHLATLYVSKKFF 113
                  I  L  L  L L +     NSF+  I       R        L  L ++   F
Sbjct: 510 -------IGRLENLAILKLSN-----NSFSGNIPAELGDCRS-------LIWLDLNTNLF 550

Query: 114 QGNIPLEIG---------------------VYFPRLMYLNLSRNEFDGSIPSSIGDLNSL 152
            G IP  +                          +  +   +  EF G     +  L++ 
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 153 KFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNK 212
              +++     G                                      M  +D+S N 
Sbjct: 611 NPCNITSRVYGGHTSPTFDN---------------------------NGSMMFLDMSYNM 643

Query: 213 LVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVEL 262
           L G IP +IG +  +  LNL HN+++G IP           LD+S N L+G+IP  +  L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 263 NALA 266
             L 
Sbjct: 704 TMLT 707

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (370), Expect = 5e-40
 Identities = 69/274 (25%), Positives = 109/274 (39%), Gaps = 64/274 (23%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLE---NITSLKVLDLYLNQLTRNISSSPLLHL 59
            +SG  +L +L+ L + AN + G              LK L +  N+++ ++        
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-------- 194

Query: 60  ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPL 119
              +     L +L + S     N+F+  + +      +     L  L +S     G+   
Sbjct: 195 --DVSRCVNLEFLDVSS-----NNFSTGIPF------LGDCSALQHLDISGNKLSGDFSR 241

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
            I      L  LN+S N+F G IP     L SL++L L+ N+ TGEIP  L+  C  L  
Sbjct: 242 AIS-TCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
           L                          DLS N   G +PP  G  + + +L LS NN +G
Sbjct: 299 L--------------------------DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 240 VIP-----------SLDVSYNNLNGKIPPQLVEL 262
            +P            LD+S+N  +G++P  L  L
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (370), Expect = 6e-40
 Identities = 76/290 (26%), Positives = 120/290 (41%), Gaps = 59/290 (20%)

Query: 2   NSISG---LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLH 58
           N ISG   + R  NL+ L + +N+    +P+ L + ++L+ LD+  N+L+ + S +    
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA---- 242

Query: 59  LITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIP 118
               I   + L  L + S     N F   +   P  +       L  L +++  F G IP
Sbjct: 243 ----ISTCTELKLLNISS-----NQFVGPIP--PLPLK-----SLQYLSLAENKFTGEIP 286

Query: 119 LEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE 178
             +      L  L+LS N F G++P   G  + L+ L LS N  +GE+P    +    L+
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 179 YLV-----------ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGK--LT 225
            L            ESL                  +  +DLS N   G I P + +    
Sbjct: 347 VLDLSFNEFSGELPESL------------TNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 226 RVRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQLVELNAL 265
            ++ L L +N  TG IP           L +S+N L+G IP  L  L+ L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (369), Expect = 8e-40
 Identities = 78/281 (27%), Positives = 119/281 (42%), Gaps = 61/281 (21%)

Query: 2   NSISG------LFRLRNLQELHMGANDLRGTLPWCLENIT-SLKVLDLYLNQLTRNISSS 54
           N+ SG      L ++R L+ L +  N+  G LP  L N++ SL  LDL  N  +  I  +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 55  PLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114
              +   +++ L   N           N FT  +              L +L++S  +  
Sbjct: 388 LCQNPKNTLQELYLQN-----------NGFTGKIPPTLSNCS-----ELVSLHLSFNYLS 431

Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
           G IP  +G    +L  L L  N  +G IP  +  + +L+ L L  N LTGEIP  L+  C
Sbjct: 432 GTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NC 489

Query: 175 FNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
            NL ++                           LS N+L GEIP  IG+L  +  L LS+
Sbjct: 490 TNLNWI--------------------------SLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 235 NNLTGVIPS----------LDVSYNNLNGKIPPQLVELNAL 265
           N+ +G IP+          LD++ N  NG IP  + + +  
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (367), Expect = 1e-39
 Identities = 60/282 (21%), Positives = 98/282 (34%), Gaps = 63/282 (22%)

Query: 2   NSISG-----LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPL 56
           N ++G     L    NL  + +  N L G +P  +  + +L +L L  N  + NI +   
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-- 533

Query: 57  LHLITSIEYL------------STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLA 104
           L    S+ +L            + +            N            +         
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA---NFIAGKR---YVYIKNDGMKKEC 587

Query: 105 TLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164
               +   FQG    ++          N++   + G    +  +  S+ FLD+S+N L+G
Sbjct: 588 HGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646

Query: 165 EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKL 224
            IPK +      L  L                          +L  N + G IP ++G L
Sbjct: 647 YIPKEIG-SMPYLFIL--------------------------NLGHNDISGSIPDEVGDL 679

Query: 225 TRVRALNLSHNNLTGVIPS----------LDVSYNNLNGKIP 256
             +  L+LS N L G IP           +D+S NNL+G IP
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  134 bits (340), Expect = 6e-36
 Identities = 62/256 (24%), Positives = 95/256 (37%), Gaps = 47/256 (18%)

Query: 2   NSISG-----LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSS-- 54
           N ++G     + RL NL  L +  N   G +P  L +  SL  LDL  N     I ++  
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 55  ------PLLHLITSI-EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLY 107
                     +      Y+                 F    S +  R+            
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS-----TRNPCN 614

Query: 108 VSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167
           ++ + + G+           +M+L++S N   G IP  IG +  L  L+L HN ++G IP
Sbjct: 615 ITSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673

Query: 168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRV 227
             +     +L  L   L                      DLS NKL G IP  +  LT +
Sbjct: 674 DEVG----DLRGL-NIL----------------------DLSSNKLDGRIPQAMSALTML 706

Query: 228 RALNLSHNNLTGVIPS 243
             ++LS+NNL+G IP 
Sbjct: 707 TEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  134 bits (340), Expect = 6e-36
 Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 58/266 (21%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE 64
           S L  L  L+ L +  + + G++    +   SL  LDL  N L+  +++        S+ 
Sbjct: 71  SSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLT------SLG 123

Query: 65  YLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY 124
             S L +L + S     N+                   L  L +S     G   +   + 
Sbjct: 124 SCSGLKFLNVSS-----NTLDFPGKVSGGL----KLNSLEVLDLSANSISGANVVGWVLS 174

Query: 125 --FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG-CFNLEYLV 181
                L +L +S N+  G +   +    +L+FLD+S N  +  IP    +G C  L++L 
Sbjct: 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHL- 228

Query: 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI 241
                                    D+S NKL G+    I   T ++ LN+S N   G I
Sbjct: 229 -------------------------DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 242 PS--------LDVSYNNLNGKIPPQL 259
           P         L ++ N   G+IP  L
Sbjct: 264 PPLPLKSLQYLSLAENKFTGEIPDFL 289

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (336), Expect = 2e-35
 Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 60/276 (21%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLE--NITSLKVLDLYLNQLTRNISSSPLLHLI 60
           S+SG     +L  L +  N L G +       + + LK L++  N L      S  L L 
Sbjct: 92  SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL- 150

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
            S+E L  L+   +         + ++               L  L +S     G++ + 
Sbjct: 151 NSLEVLD-LSANSISG--ANVVGWVLSDGCG----------ELKHLAISGNKISGDVDV- 196

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180
                  L +L++S N F   IP  +GD ++L+ LD+S N+L+G+  + ++  C  L+ L
Sbjct: 197 --SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLL 252

Query: 181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240
                                     ++S N+ VG IPP    L  ++ L+L+ N  TG 
Sbjct: 253 --------------------------NISSNQFVGPIPPLP--LKSLQYLSLAENKFTGE 284

Query: 241 IPS-----------LDVSYNNLNGKIPPQLVELNAL 265
           IP            LD+S N+  G +PP     + L
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 46/156 (29%)

Query: 127 RLMYLNLSR---NEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF-NLEYLVE 182
           ++  ++LS    N    ++ SS+  L  L+ L LS++ + G +       C  +L  L  
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS---GFKCSASLTSL-- 105

Query: 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP--QIGKLTRVRALNLSHNNLTGV 240
                                   DLS N L G +     +G  + ++ LN+S N L   
Sbjct: 106 ------------------------DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141

Query: 241 IP-----------SLDVSYNNLNGKIPPQLVELNAL 265
                         LD+S N+++G      V  +  
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 43/127 (33%)

Query: 148 DLNSLKFLDLSHNQLT---GEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY 204
             + +  +DLS   L      +   L     +L  L                        
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSL----LSLTGLES---------------------- 81

Query: 205 GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS------------LDVSYNNLN 252
            + LS + + G +         + +L+LS N+L+G + +            L+VS N L+
Sbjct: 82  -LFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

Query: 253 GKIPPQL 259
                  
Sbjct: 140 FPGKVSG 146

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  142 bits (361), Expect = 4e-41
 Identities = 57/272 (20%), Positives = 92/272 (33%), Gaps = 82/272 (30%)

Query: 5   SGLFRLRNLQELHM-GANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI 63
           S L  L  L  L++ G N+L G +P  +  +T L  L +    ++  I           +
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD--------FL 121

Query: 64  EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV 123
             + TL  L         N+ +                             G +P  I  
Sbjct: 122 SQIKTLVTLDFSY-----NALS-----------------------------GTLPPSIS- 146

Query: 124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSL-KFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182
             P L+ +    N   G+IP S G  + L   + +S N+LTG+IP        NL ++  
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP--TFANLNLAFV-- 202

Query: 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242
                                   DLS N L G+     G     + ++L+ N+L   + 
Sbjct: 203 ------------------------DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 243 S---------LDVSYNNLNGKIPPQLVELNAL 265
                     LD+  N + G +P  L +L  L
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (323), Expect = 2e-35
 Identities = 55/251 (21%), Positives = 95/251 (37%), Gaps = 56/251 (22%)

Query: 1   MNSISG-----LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSP 55
           +N++ G     + +L  L  L++   ++ G +P  L  I +L  LD   N L+  +  S 
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS- 144

Query: 56  LLHLITSIEYLSTLNYLVLVSMLHFPNSFT--ITMSWRPFRMPIQSHWHLATLYVSKKFF 113
                  I  L  L  +         N  +  I  S+  F     S      + +S+   
Sbjct: 145 -------ISSLPNLVGITFDG-----NRISGAIPDSYGSFSKLFTS------MTISRNRL 186

Query: 114 QGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG 173
            G IP         L +++LSRN  +G      G   + + + L+ N L  ++ K   +G
Sbjct: 187 TGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VG 241

Query: 174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS 233
               + L                         +DL  N++ G +P  + +L  + +LN+S
Sbjct: 242 --LSKNLNG-----------------------LDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 234 HNNLTGVIPSL 244
            NNL G IP  
Sbjct: 277 FNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  120 bits (304), Expect = 1e-32
 Identities = 54/261 (20%), Positives = 85/261 (32%), Gaps = 63/261 (24%)

Query: 21  NDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF 80
               G L         +  LDL    L +            S+  L  LN+L +      
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS------SLANLPYLNFLYI----GG 85

Query: 81  PNSFTITMSWRPFRMPIQSHW----HLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN 136
            N+            PI         L  LY++     G IP  +      L+ L+ S N
Sbjct: 86  INNLV---------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYN 135

Query: 137 EFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYK 196
              G++P SI  L +L  +    N+++G IP        +   L  S+            
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----GSFSKLFTSM------------ 179

Query: 197 GKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDV 246
                      +S N+L G+IPP    L  +  ++LS N L G              + +
Sbjct: 180 ----------TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 247 SYNNLNGKIPP--QLVELNAL 265
           + N+L   +        LN L
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGL 249

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.1 bits (209), Expect = 4e-19
 Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 36/146 (24%)

Query: 131 LNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKE 190
            +     + G +  +      +  LDLS   L    P   ++   NL YL          
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNF-------- 80

Query: 191 TSYSYKGKPLNKMYGIDLS-CNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS------ 243
                          + +   N LVG IPP I KLT++  L ++H N++G IP       
Sbjct: 81  ---------------LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 244 ----LDVSYNNLNGKIPPQLVELNAL 265
               LD SYN L+G +PP +  L  L
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNL 151

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 13/74 (17%)

Query: 205 GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------------SLDVS-YNNL 251
             D      +G +     +  RV  L+LS  NL    P             L +   NNL
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 252 NGKIPPQLVELNAL 265
            G IPP + +L  L
Sbjct: 90  VGPIPPAIAKLTQL 103

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  104 bits (261), Expect = 1e-25
 Identities = 39/287 (13%), Positives = 77/287 (26%), Gaps = 36/287 (12%)

Query: 2   NSISG----LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLL 57
           N + G          L  L++  N +             ++ L    N+L   I +    
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI--- 395

Query: 58  HLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMP--IQSHWHLATLYVSKKFFQG 115
                 + +S ++ +         N            +        +++++ +S      
Sbjct: 396 ---FDAKSVSVMSAIDFSY-----NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDG-------SIPSSIGDLNSLKFLDLSHNQLTGEIPK 168
               E+      L  +NL  N               +  +   L  +DL  N+LT     
Sbjct: 448 FPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 169 HLAIGCFNLEYL-VESLMFTT--KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLT 225
             A     L  + +    F+    +   S   K        D   N+ + E P  I    
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 226 RVRALNLSHNNLTGVIPS-------LDVSYNNLNGKIPPQLVELNAL 265
            +  L +  N++  V          LD+  N         +      
Sbjct: 567 SLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEA 613

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (260), Expect = 2e-25
 Identities = 32/276 (11%), Positives = 80/276 (28%), Gaps = 41/276 (14%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
               +  L +      G +P  +  +T L+VL L  +    N            I    +
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF----GPKGISANMS 134

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
                 + M +                P +    L    ++    Q +I     +   + 
Sbjct: 135 DEQKQKMRMHYQKTF--------VDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT-LKD 185

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTT 188
             +    N     +  ++  L  L+   + ++    E         +  E    +  + T
Sbjct: 186 TQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEA----WENENSEYAQQYKT 240

Query: 189 KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------ 242
           ++  +      L  +  +++     + ++P  +  L  ++ +N++ N             
Sbjct: 241 EDLKWDN----LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 243 ------------SLDVSYNNL-NGKIPPQLVELNAL 265
                        + + YNNL    +   L ++  L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (250), Expect = 4e-24
 Identities = 39/284 (13%), Positives = 86/284 (30%), Gaps = 44/284 (15%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYL 66
              L++L ++ +        LP  L+ +  ++++++  N+             +      
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 67  STLNYLVL----VSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
             +  + +    +       S          +M       L  L       +G +P   G
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSL--------QKMK-----KLGMLECLYNQLEGKLP-AFG 350

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG-CFNLEYL- 180
               +L  LNL+ N+      +  G    ++ L  +HN+L   IP          +  + 
Sbjct: 351 -SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAID 408

Query: 181 VESLMFTTKETSYSYKGKP----LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN 236
                  + +        P       +  I+LS N++           + + ++NL  N 
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 237 LTGVIP-----------------SLDVSYNNLNGKIPPQLVELN 263
           LT +                   S+D+ +N L   +        
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATT 511

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 4e-23
 Identities = 38/271 (14%), Positives = 87/271 (32%), Gaps = 34/271 (12%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
           +           +  +        T     +N+  L  +++Y       + +   L  + 
Sbjct: 216 SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF--LKALP 273

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSK-KFFQGNIPLE 120
            ++ ++ +     +S     + +                  +  +Y+         +   
Sbjct: 274 EMQLIN-VACNRGISGEQLKDDWQALAD-------APVGEKIQIIYIGYNNLKTFPVETS 325

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180
           +     +L  L    N+ +G +P + G    L  L+L++NQ+T  IP +       +E L
Sbjct: 326 LQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENL 382

Query: 181 -VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG-------EIPPQIGKLTRVRALNL 232
                        +  K   ++ M  ID S N++          + P   K   V ++NL
Sbjct: 383 SFAHNKLKYIPNIFDAKS--VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 233 SHNNLTGVIPS----------LDVSYNNLNG 253
           S+N ++               +++  N L  
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 3e-21
 Identities = 45/274 (16%), Positives = 82/274 (29%), Gaps = 42/274 (15%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI- 63
           + L +++ L  L    N L G LP    +   L  L+L  NQ+T          +  +  
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT---------EIPANFC 373

Query: 64  EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG-------N 116
            +   +  L         N         P     +S   ++ +  S              
Sbjct: 374 GFTEQVENLSFAH-----NKLKYI----PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176
           +          +  +NLS N+            + L  ++L  N LT      L     N
Sbjct: 425 LDPTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 177 LEYLV--ESLMFTT---KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN 231
            +      S+        + S  ++   L  + GIDLS N    + P Q    + ++   
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFG 542

Query: 232 LSHNNLTGVIPSLDVSYNNLNGKIPPQLVELNAL 265
           + +          D   N    + P  +    +L
Sbjct: 543 IRNQ--------RDAQGNRTLREWPEGITLCPSL 568

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 91.3 bits (227), Expect = 5e-21
 Identities = 29/270 (10%), Positives = 79/270 (29%), Gaps = 57/270 (21%)

Query: 2   NSISGLFRLR--NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL 59
             +    R    +L +  + ++  + ++            +    N +T          +
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT---------FV 198

Query: 60  ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPL 119
             ++  L+ L    + +     + F            I   W       ++++      L
Sbjct: 199 SKAVMRLTKLRQFYMGN-----SPFVAE--------NICEAWENENSEYAQQY--KTEDL 243

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
           +       L  + +        +P+ +  L  ++ ++++ N+                  
Sbjct: 244 KWD-NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKL-VGEIPPQIGKLTRVRALNLSHNNLT 238
           + E +                     I +  N L    +   + K+ ++  L   +N L 
Sbjct: 303 VGEKIQI-------------------IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 239 GVIPS---------LDVSYNNLNGKIPPQL 259
           G +P+         L+++YN +   IP   
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITE-IPANF 372

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.1 bits (211), Expect = 6e-19
 Identities = 31/242 (12%), Positives = 61/242 (25%), Gaps = 46/242 (19%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
                 F+  N+  +++  N +           + L  ++L  N LT  I  + L     
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI 121
           + +    L  + L       N  T             +  +L  + +S   F    P + 
Sbjct: 483 NFKNTYLLTSIDLRF-----NKLTKL----SDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 122 G-----VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176
                   F      +   N      P  I    SL  L +  N +   + + +     N
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI---TPN 588

Query: 177 LEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN 236
           +  L                          D+  N  +      +          L ++ 
Sbjct: 589 ISVL--------------------------DIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

Query: 237 LT 238
             
Sbjct: 623 TQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 14/133 (10%), Positives = 26/133 (19%), Gaps = 38/133 (28%)

Query: 132 NLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET 191
           N   + +      S+     +  L L     +G +P  +      LE L           
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVL----------- 110

Query: 192 SYSYKGKPLNKMYGIDLSCNKLVG----EIPPQIGKLTRVRALNLSHNNLTGVIPS---- 243
                           L  +          P  I              +           
Sbjct: 111 ---------------ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 244 ---LDVSYNNLNG 253
               D+  + +N 
Sbjct: 156 EDFSDLIKDCINS 168

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (258), Expect = 3e-25
 Identities = 50/273 (18%), Positives = 88/273 (32%), Gaps = 57/273 (20%)

Query: 2   NSISGL--FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL 59
                    +L++L+ L       +G   +   ++ SL+ LDL  N L+     S     
Sbjct: 314 CKFGQFPTLKLKSLKRLTF--TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 60  ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPL 119
            TS++YL           L F    T++ ++            L  L       +     
Sbjct: 372 TTSLKYLD----------LSFNGVITMSSNFLGLE-------QLEHLDFQHSNLKQMSEF 414

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
            + +    L+YL++S      +       L+SL+ L ++ N         +     NL +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
           L                          DLS  +L    P     L+ ++ LN+SHNN   
Sbjct: 475 L--------------------------DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 240 VIPS----------LDVSYNNLNGKIPPQLVEL 262
           +             LD S N++      +L   
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 45/266 (16%), Positives = 83/266 (31%), Gaps = 58/266 (21%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYL 66
            F   +L+ L +  N +  T+      +  L+ LD   + L +    S  L L       
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL------- 420

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFP 126
             L YL +           +  +     +       L  L ++   FQ N   +I     
Sbjct: 421 RNLIYLDISH-----THTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELR 470

Query: 127 RLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMF 186
            L +L+LS+ + +   P++   L+SL+ L++SHN               +L+ L      
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVL------ 523

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKL-TRVRALNLSHNNLTGVIPS-- 243
                               D S N ++     ++    + +  LNL+ N+         
Sbjct: 524 --------------------DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563

Query: 244 ----------LDVSYNNLNGKIPPQL 259
                     L V    +    P   
Sbjct: 564 FLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 5e-20
 Identities = 47/281 (16%), Positives = 73/281 (25%), Gaps = 60/281 (21%)

Query: 10  LRNLQELHMGANDLR------GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT-- 61
           L  L  L +    L         +      +T++    L    + R    S         
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 62  ----SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVS--KKFFQG 115
                     TL    L  +    N      S             L  L +S     F+G
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-------EVDLPSLEFLDLSRNGLSFKG 363

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF 175
                       L YL+LS N    ++ S+   L  L+ LD  H+ L       + +   
Sbjct: 364 CCSQSDFGT-TSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 176 NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHN 235
           NL YL                          D+S              L+ +  L ++ N
Sbjct: 422 NLIYL--------------------------DISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 236 NLTGVIPS-----------LDVSYNNLNGKIPPQLVELNAL 265
           +                  LD+S   L    P     L++L
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 43/288 (14%)

Query: 2   NSISGLFR-----LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPL 56
             I  +       L +L  L +  N ++         ++SL+ L      L    +    
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-- 119

Query: 57  LHLITSIEYLS-TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
           +  + +++ L+   N +        P  F              +  +L  L +S    Q 
Sbjct: 120 IGHLKTLKELNVAHNLI---QSFKLPEYF-------------SNLTNLEHLDLSSNKIQS 163

Query: 116 NIPLEIGVYF---PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI 172
               ++ V        + L+LS N  +   P +  ++  L  L L +N  +  + K    
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQ 222

Query: 173 GCFNLEYLVESLM----FTTKETSYSYKGKPLNKMYGIDLSCNKL---VGEIPPQIGKLT 225
           G   LE     L         E       + L  +   +     L   + +I      LT
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 226 RVRALNLSHNNLTGVIP--------SLDVSYNNLNGKIPPQLVELNAL 265
            V + +L    +  V           L++           +L  L  L
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 39/274 (14%), Positives = 84/274 (30%), Gaps = 31/274 (11%)

Query: 4   ISGLFRLRNLQELHMGANDLRGTLP-WCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
             G F+   L +L +  N     +   C++ +  L+V  L L +     +          
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 63  IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
                T+    L  + ++ +      +            ++++  +     +        
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNC---------LTNVSSFSLVSVTIERVKDFS-- 301

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182
            Y     +L L   +F       +  L  L F          E      +   +LE+L  
Sbjct: 302 -YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE------VDLPSLEFLDL 354

Query: 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242
           S    + +   S        +  +DLS N ++  +      L ++  L+  H+NL  +  
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 243 -----------SLDVSYNNLNGKIPPQLVELNAL 265
                       LD+S+ +           L++L
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 49/267 (18%), Positives = 85/267 (31%), Gaps = 55/267 (20%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLN 70
            + + L +  N LR    +   +   L+VLDL   ++              + + LS L+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--------AYQSLSHLS 79

Query: 71  YLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMY 130
            L+L       N    +++   F         L  L   +          IG +   L  
Sbjct: 80  TLILTG-----NPIQ-SLALGAFSGLS----SLQKLVAVETNLASLENFPIG-HLKTLKE 128

Query: 131 LNLSRNEFDG-SIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTK 189
           LN++ N      +P    +L +L+ LDLS N++       L      +  L  SL     
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSL----- 182

Query: 190 ETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS------ 243
                            DLS N +   I P   K  R+  L L +N  +  +        
Sbjct: 183 -----------------DLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 244 -----LDVSYNNLNGKIPPQLVELNAL 265
                  +       +   +  + +AL
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSAL 251

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 44/243 (18%), Positives = 71/243 (29%), Gaps = 47/243 (19%)

Query: 4   ISGLFRLRNLQELHMGANDLRGTLP-WCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
            S    L  L+ L    ++L+         ++ +L  LD+         +          
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-------- 440

Query: 63  IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
              LS+L  L +       NSF        F        +L  L +S+   +   P    
Sbjct: 441 FNGLSSLEVLKMAG-----NSFQENFLPDIF----TELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182
                L  LN+S N F          LNSL+ LD S N +     + L     +L +L  
Sbjct: 492 -SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL-- 548

Query: 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ--IGKLTRVRALNLSHNNLTGV 240
                                   +L+ N        Q  +  +   R L +    +   
Sbjct: 549 ------------------------NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584

Query: 241 IPS 243
            PS
Sbjct: 585 TPS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 25/152 (16%), Positives = 41/152 (26%), Gaps = 38/152 (25%)

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
                 L+LS N        S      L+ LDLS  ++             +L  L    
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTL---- 81

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS- 243
                                  L+ N +          L+ ++ L     NL  +    
Sbjct: 82  ----------------------ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 244 ---------LDVSYNNLNG-KIPPQLVELNAL 265
                    L+V++N +   K+P     L  L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 30/180 (16%)

Query: 2   NSISGLFR-----LRNLQELHMGANDLRGTLPWC-LENITSLKVLDLYLNQLTRNISSSP 55
                 F      L +L+ L M  N  +          + +L  LDL   QL +   ++ 
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA- 489

Query: 56  LLHLITSIEYLSTLNYLVLVSMLHFPNSFT--ITMSWRPFRMPIQSHWHLATLYVSKKFF 113
                     LS+L  L +       N+F    T  ++           L  L  S    
Sbjct: 490 -------FNSLSSLQVLNMSH-----NNFFSLDTFPYKCLN-------SLQVLDYSLNHI 530

Query: 114 QGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSS--IGDLNSLKFLDLSHNQLTGEIPKHLA 171
             +   E+  +   L +LNL++N+F  +      +  +   + L +   ++    P    
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.1 bits (237), Expect = 2e-22
 Identities = 51/285 (17%), Positives = 95/285 (33%), Gaps = 57/285 (20%)

Query: 2   NSISGL-----FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPL 56
           N+++ +       L  L+   +  N+++      L  + +++ L+L  +   ++IS + L
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 57  LHLI-TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
             +   S ++L  L +L +       N      S     +      +L  L +S  F   
Sbjct: 318 PKIDDFSFQWLKCLEHLNMED-----NDIPGIKSNMFTGLI-----NLKYLSLSNSFTSL 367

Query: 116 NIPLE---IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI 172
                   + +    L  LNL++N+       +   L  L+ LDL  N++  E+      
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 173 GCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNL 232
           G  N+  +                           LS NK +         +  ++ L L
Sbjct: 428 GLENIFEI--------------------------YLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 233 SHNNLTGVIPS------------LDVSYNNLNGKIPPQLVELNAL 265
               L  V  S            LD+S NN+       L  L  L
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.3 bits (235), Expect = 4e-22
 Identities = 46/263 (17%), Positives = 82/263 (31%), Gaps = 49/263 (18%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS- 67
               L  L++  N +          +  L+VLDL LN++ + ++      L  +I  +  
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-ENIFEIYL 437

Query: 68  TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG-NIPLEIGVYFP 126
           + N  + +      NSF +  S             L  L + +   +  +          
Sbjct: 438 SYNKYLQL----TRNSFALVPS-------------LQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 127 RLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMF 186
            L  L+LS N         +  L  L+ LDL HN L                     L  
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-------------------RLWK 521

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS--- 243
                   Y  K L+ ++ ++L  N            L  ++ ++L  NNL  +  S   
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 244 -------LDVSYNNLNGKIPPQL 259
                  L++  N +        
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.4 bits (225), Expect = 8e-21
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 24/245 (9%)

Query: 4   ISGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
              L + L  L+ L++  N+L           T+L  L L  N + + I ++P +    +
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQ-KN 122

Query: 63  IEYLS-TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI 121
           +  L  + N L    +                        +L  L +S    Q     E+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLE-----------------NLQELLLSNNKIQALKSEEL 165

Query: 122 GVYF-PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN--LE 178
            ++    L  L LS N+     P     +  L  L L++ QL   + + L +   N  + 
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

Query: 179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238
            L  S    +  ++ ++ G     +  +DLS N L          L ++    L +NN+ 
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285

Query: 239 GVIPS 243
            +   
Sbjct: 286 HLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.7 bits (210), Expect = 9e-19
 Identities = 60/285 (21%), Positives = 93/285 (32%), Gaps = 40/285 (14%)

Query: 1   MNSISGL-----FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSP 55
            N +  L      R   L  L +G N +    P   + +  LKVL+L  N+L++      
Sbjct: 34  HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK-- 91

Query: 56  LLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
                 +  + + L  L L+S     NS       +    P     +L TL +S      
Sbjct: 92  ------TFAFCTNLTELHLMS-----NSIQ-----KIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLN--SLKFLDLSHNQLTGEIPKHLAIG 173
                       L  L LS N+        +      SLK L+LS NQ+    P      
Sbjct: 136 TKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-A 193

Query: 174 CFNLEYL-VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIG--KLTRVRAL 230
              L  L + ++      T           +  + LS ++L           K T +  L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 231 NLSHNNLTGVIPS----------LDVSYNNLNGKIPPQLVELNAL 265
           +LS+NNL  V               + YNN+       L  L  +
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 39/240 (16%), Positives = 64/240 (26%), Gaps = 45/240 (18%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-- 67
           L N+ E+++  N            + SL+ L L    L    SS      + ++  L   
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 68  --TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYF 125
              +  +    +        + +        +   W  A       F +G          
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQ----HNNLARLWKHANPGGPIYFLKG---------L 535

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLM 185
             L  LNL  N FD        DL  LK +DL  N L             +L+ L     
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN-NQVSLKSL----- 589

Query: 186 FTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGK-LTRVRALNLSHNNLTGVIPSL 244
                                +L  N +        G     +  L++  N       S+
Sbjct: 590 ---------------------NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 46/268 (17%), Positives = 86/268 (32%), Gaps = 59/268 (22%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
             N+  L++  N LR          + L  LD+  N +++              + L  L
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE--------LCQKLPML 75

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
             L L       N  +  +S + F        +L  L++     Q             L+
Sbjct: 76  KVLNLQH-----NELS-QLSDKTFAFCT----NLTELHLMSNSIQKIKNNPFV-KQKNLI 124

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI-GCFNLEYLVESLMFTT 188
            L+LS N    +   +   L +L+ L LS+N++     + L I    +L+ L        
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL-------- 176

Query: 189 KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------ 242
                             +LS N++    P     + R+  L L++  L   +       
Sbjct: 177 ------------------ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 243 -------SLDVSYNNLNGKIPPQLVELN 263
                  +L +S + L+       + L 
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLK 246

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 16/176 (9%)

Query: 102 HLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161
           ++  L ++    +          + +L  L++  N      P     L  LK L+L HN+
Sbjct: 26  NITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI 221
           L+    K  A  C NL  L   LM  + +   +        +  +DLS N L        
Sbjct: 85  LSQLSDKTFA-FCTNLTEL--HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 222 GKLTRVRALNLSHNNLTGVIP------------SLDVSYNNLNGKIPPQLVELNAL 265
            +L  ++ L LS+N +  +               L++S N +    P     +  L
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 40/159 (25%)

Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176
           +P ++      +  LNL+ N+      ++    + L  LD+  N ++   P+        
Sbjct: 19  VPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPM 74

Query: 177 LEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN 236
           L+ L                          +L  N+L           T +  L+L  N+
Sbjct: 75  LKVL--------------------------NLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

Query: 237 LTGVIP----------SLDVSYNNLNGKIPPQLVELNAL 265
           +  +            +LD+S+N L+       V+L  L
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 18/179 (10%)

Query: 1   MNSISGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL 59
           ++S    F+ LRNL  L +  N++       LE +  L++LDL  N L R    +     
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 60  ITSIEYLSTLNYLVL-------VSMLHFPNSFTIT---MSWRPFRMPIQSHWH----LAT 105
           I  ++ LS L+ L L       + +  F + F +    +          S ++    L +
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 106 LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164
           L + K           G  F  L  L++  N FD +   SI     + +++ +H  +  
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE-SIAWF--VNWINETHTNIPE 644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.2 bits (234), Expect = 5e-22
 Identities = 39/267 (14%), Positives = 81/267 (30%), Gaps = 32/267 (11%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
            +        L +L +  N +             ++ L    N+L       P +    S
Sbjct: 587 HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK----YIPNIFNAKS 642

Query: 63  IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
           +  + +++         + N            M      + +T+ +S    Q   P E+ 
Sbjct: 643 VYVMGSVD-------FSY-NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELF 693

Query: 123 VYFPRLMYLNLSRNEFD-------GSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG-C 174
                +  + LS N               +  +   L  +DL  N+LT  +         
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752

Query: 175 FNLEYL-VESLMFTT--KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN 231
             L  + V    F++   +   S + K     +  D   N+++ + P  I     +  L 
Sbjct: 753 PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 232 LSHNNLTGVIPS-------LDVSYNNL 251
           +  N++  V          LD++ N  
Sbjct: 813 IGSNDIRKVDEKLTPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.4 bits (232), Expect = 1e-21
 Identities = 28/256 (10%), Positives = 76/256 (29%), Gaps = 27/256 (10%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
              +  L +     +G +P  +  +T LKVL    +  T +        L   +      
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
              +    +       + +S             L    +++      I  +  +      
Sbjct: 382 RIRMHYKKMFLDYDQRLNLS------------DLLQDAINRNPEMKPIKKDSRISLKDTQ 429

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTK 189
             NL+ N     I  +I  L  L+ +  +++  T +           +++   +  +  +
Sbjct: 430 IGNLT-NRI-TFISKAIQRLTKLQIIYFANSPFTYDNIA--------VDWEDANSDYAKQ 479

Query: 190 ETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYN 249
             +       L  +  ++L     + ++P  +  L  +++LN++ N              
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL-----K 534

Query: 250 NLNGKIPPQLVELNAL 265
               ++         +
Sbjct: 535 ADWTRLADDEDTGPKI 550

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.9 bits (215), Expect = 2e-19
 Identities = 47/288 (16%), Positives = 86/288 (29%), Gaps = 50/288 (17%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE 64
           + L ++  L  L    N +R  L         L  L L  NQ+   I           +E
Sbjct: 567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED-FCAFTDQVE 622

Query: 65  YLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY 124
            L   ++          N         P     +S + + ++  S           I   
Sbjct: 623 GLG-FSH----------NKLKYI----PNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCS 666

Query: 125 FP-----RLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
                      + LS NE            + +  + LS+N +T      L     N + 
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 180 LV--ESLMFTT---KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
                ++          S  ++   L  +  +D+S N      P Q    ++++A  + H
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRH 785

Query: 235 ------NNLTGVIPS----------LDVSYNNLNG---KIPPQLVELN 263
                 N +    P+          L +  N++     K+ PQL  L+
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILD 833

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 35/282 (12%), Positives = 77/282 (27%), Gaps = 58/282 (20%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
           +  +      + ++ +               N+  L  ++LY       +          
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-------- 509

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI 121
            +  L  L  L + +     ++  +   W        +   +   Y+     +   P   
Sbjct: 510 FLYDLPELQSLNI-ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASA 567

Query: 122 GV-YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180
            +    +L  L+   N+       + G    L  L L +NQ+  EIP+        +E L
Sbjct: 568 SLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624

Query: 181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP--QIGKLTRVRALNLSHNNLT 238
                                       S NKL   IP       +  + +++ S+N + 
Sbjct: 625 --------------------------GFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 239 GVIP---------------SLDVSYNNLNGKIPPQLVELNAL 265
                              ++ +SYN +           + +
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 30/254 (11%), Positives = 74/254 (29%), Gaps = 74/254 (29%)

Query: 6   GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEY 65
             ++  N   + +  N+++          + +  + L  N +T +I  + L     + + 
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN 726

Query: 66  LSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV-Y 124
              L  + L       N  T                              ++  +     
Sbjct: 727 TYLLTTIDLRF-----NKLT------------------------------SLSDDFRATT 751

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH------NQLTGEIPKHLAIGCFNLE 178
            P L  +++S N F  S P+   + + LK   + H      N++  + P  +   C +L 
Sbjct: 752 LPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLI 809

Query: 179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238
            L                           +  N +  ++  ++    ++  L+++ N   
Sbjct: 810 QL--------------------------QIGSNDI-RKVDEKL--TPQLYILDIADNPNI 840

Query: 239 GVIPSLDVSYNNLN 252
            +  +    Y    
Sbjct: 841 SIDVTSVCPYIEAG 854

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 3e-15
 Identities = 36/264 (13%), Positives = 76/264 (28%), Gaps = 52/264 (19%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYL 66
           L   + L    +  + +       ++ I     + L   Q+     ++ +  +  +I+ L
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQI--GNLTNRITFISKAIQRL 447

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFP 126
           + L  +   +     + FT                              N  L       
Sbjct: 448 TKLQIIYFAN-----SPFTY----------DNIAVDWEDANSDYAKQYENEELSWS-NLK 491

Query: 127 RLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMF 186
            L  + L        +P  + DL  L+ L+++ N+         A    +   L +    
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-----AAQLKADWTRLADDEDT 546

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP--QIGKLTRVRALNLSHNNLTGVIPS- 243
                          K+    +  N L  E P    + K+ ++  L+  HN +   + + 
Sbjct: 547 -------------GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAF 591

Query: 244 --------LDVSYNNLNGKIPPQL 259
                   L + YN +   IP   
Sbjct: 592 GTNVKLTDLKLDYNQIEE-IPEDF 614

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 34/275 (12%), Positives = 62/275 (22%), Gaps = 98/275 (35%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE 64
             + RL  LQ ++   +                +  +    +   N           S  
Sbjct: 442 KAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEEL--------SWS 488

Query: 65  YLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY 124
            L  L  + L +  +                                     +P  +   
Sbjct: 489 NLKDLTDVELYNCPNM----------------------------------TQLPDFLY-D 513

Query: 125 FPRLMYLNLSRNEFDG---------SIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG-C 174
            P L  LN++ N              +         ++   + +N L  E P   ++   
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM 572

Query: 175 FNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
             L  L                          D   NK+        G   ++  L L +
Sbjct: 573 VKLGLL--------------------------DCVHNKV--RHLEAFGTNVKLTDLKLDY 604

Query: 235 NNLTGVIPS----------LDVSYNNLNGKIPPQL 259
           N +  +             L  S+N L   IP   
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIF 638

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 55/291 (18%), Positives = 84/291 (28%), Gaps = 66/291 (22%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL----- 59
           SGL  L  L++L + AN           N  SL  L +  N     + +  L +L     
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 60  -------ITSIEY-------LSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLAT 105
                  I + +        LS L  L L       N      +      P      L  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-----NEPLSLKTEAFKECP-----QLEL 404

Query: 106 LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE 165
           L ++    +             L  LNLS +  D S       L +L+ L+L  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 166 IPKHLAI--GCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGK 223
             +          LE L                           LS   L          
Sbjct: 465 NIQKTNSLQTLGRLEIL--------------------------VLSFCDLSSIDQHAFTS 498

Query: 224 LTRVRALNLSHNNLTGVIPS---------LDVSYNNLNGKIPPQLVELNAL 265
           L  +  ++LSHN LT              L+++ N+++  +P  L  L+  
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQ 549

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 9e-18
 Identities = 48/274 (17%), Positives = 87/274 (31%), Gaps = 31/274 (11%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLEN--ITSLKVLDLYLNQLTRNISSSPLLHLITS 62
            G F     Q L+ G       +   L+N  I SL +             +        S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 63  IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
           +E ++ L      ++    N+F        F         L  L ++       +P  + 
Sbjct: 256 VESIN-LQKHYFFNIS--SNTF------HCFS-------GLQELDLTATHLS-ELPSGLV 298

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182
                L  L LS N+F+     S  +  SL  L +  N    E+         NL  L  
Sbjct: 299 -GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242
           S          + + + L+ +  ++LS N+ +        +  ++  L+L+   L     
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 243 -----------SLDVSYNNLNGKIPPQLVELNAL 265
                       L++S++ L+         L AL
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 40/268 (14%), Positives = 76/268 (28%), Gaps = 32/268 (11%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-T 68
              L  L + AN L       L    +LK L      ++  I   PL +   ++E L   
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQ-KTLESLYLG 137

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV-YFPR 127
            N++  + +     +                   L  L             ++       
Sbjct: 138 SNHISSIKLPKGFPTE-----------------KLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA-IGCFNLEYLVESLMF 186
            + LNL+ N+    I     D    + L+    Q    I K L      +L       M 
Sbjct: 181 NLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS--- 243
               +   ++G     +  I+L  +             + ++ L+L+  +L+ +      
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG 299

Query: 244 ------LDVSYNNLNGKIPPQLVELNAL 265
                 L +S N              +L
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSL 327

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 46/235 (19%), Positives = 80/235 (34%), Gaps = 47/235 (20%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYL 66
           L  L +LQ L++  N+         +    L++LDL   +L    + SP  +L       
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL------- 424

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV--Y 124
             L  L L       +   I+       +P      L  L +    F      +      
Sbjct: 425 HLLKVLNLSH-----SLLDISSEQLFDGLP-----ALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
             RL  L LS  +       +   L  +  +DLSHN+LT    + L+    +L+ +    
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS----HLKGIY--- 527

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
                                ++L+ N +   +P  +  L++ R +NL  N L  
Sbjct: 528 ---------------------LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 44/272 (16%), Positives = 83/272 (30%), Gaps = 38/272 (13%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS- 67
           RL NL  L +    +        ++   L  L L  N L   ++ + L     ++++L  
Sbjct: 55  RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGP-KALKHLFF 112

Query: 68  TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPR 127
               +  +  +   N                    L +LY+       +I L  G    +
Sbjct: 113 IQTGISSIDFIPLHNQK-----------------TLESLYLGSNHIS-SIKLPKGFPTEK 154

Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLK--FLDLSHNQLTGEIPKHLAIGCFNLEYLVESLM 185
           L  L+   N         +  L       L+L+ N + G  P   A      + L     
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG--AFDSAVFQSLNFGGT 212

Query: 186 FTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR--VRALNLSHNNLTGVIPS 243
                     K   +  ++             P     L    V ++NL  +    +  +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 244 ----------LDVSYNNLNGKIPPQLVELNAL 265
                     LD++  +L+ ++P  LV L+ L
Sbjct: 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 37/151 (24%)

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
                 L  S N       ++   L +L FLDL+  Q+              L+ L    
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ-SQHRLDTL---- 86

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-- 242
                                  L+ N L+      +     ++ L      ++ +    
Sbjct: 87  ----------------------VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124

Query: 243 --------SLDVSYNNLNGKIPPQLVELNAL 265
                   SL +  N+++    P+      L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 51/266 (19%), Positives = 84/266 (31%), Gaps = 55/266 (20%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
           L  L+ L +  N  +G++ +    + SL  LDL  N L+ +   S       S+ +L  L
Sbjct: 327 LPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD-L 383

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
           ++          N   I  +             L  L       +        +   +L+
Sbjct: 384 SF----------NGAIIMSAN------FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTK 189
           YL++S              L SL  L ++ N        ++     NL +L         
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL--------- 478

Query: 190 ETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS------ 243
                            DLS  +L          L R++ LN+SHNNL  +  S      
Sbjct: 479 -----------------DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 244 ----LDVSYNNLNGKIPPQLVELNAL 265
               LD S+N +            +L
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSL 547

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 46/287 (16%), Positives = 89/287 (31%), Gaps = 42/287 (14%)

Query: 2   NSISGLFR-----LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPL 56
             I  +       L +L  L +  N ++   P     +TSL+ L     +L  ++ S P+
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPI 124

Query: 57  LHLITSIEYLS-TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
             L  +++ L+   N++        P  F+         +      +L  + +S  + Q 
Sbjct: 125 GQL-ITLKKLNVAHNFI---HSCKLPAYFS--------NLT-----NLVHVDLSYNYIQT 167

Query: 116 NIPLEIGVYF---PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI 172
               ++          + L++S N     I         L  L L  N  +  I K    
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 173 GCFNLEYLVESLMFTTKETSYSY------KGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR 226
               L      L     E +         +G     +    L+      +   +   L  
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 227 VRALNLSHNNLTGVIP--------SLDVSYNNLNGKIPPQLVELNAL 265
           V A++L+  ++  +          SL +    L       L  L +L
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL 333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 40/232 (17%), Positives = 72/232 (31%), Gaps = 47/232 (20%)

Query: 8   FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS 67
               +L+ L +  N     +      +  L+ LD   + L R    S  L L   + YL 
Sbjct: 373 LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLD 430

Query: 68  -TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFP 126
            +     +     F   F                  L TL ++   F+ N    +     
Sbjct: 431 ISYTNTKID----FDGIF-------------LGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 127 RLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMF 186
            L +L+LS+ + +         L+ L+ L++SHN L      H     ++L  L      
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTL------ 526

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238
                               D S N++             +   NL++N++ 
Sbjct: 527 --------------------DCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 36/281 (12%)

Query: 1   MNSIS----GLFRLRNLQELHMGANDLRGTLPW-CLENITSLKVLDLYLNQLTRNISSSP 55
           +N I       F+   L EL +  N     +   CL+N+  L V  L L +     +   
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 56  LLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
                + +E L  +       + +  +     + +           +++ + ++    + 
Sbjct: 250 FEP--SIMEGLCDVTIDEF-RLTYTNDFSDDIVKFHCLA-------NVSAMSLAGVSIKY 299

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF 175
              LE      +   L++ R +     P+   DL  LK L L+ N+ +    K   +   
Sbjct: 300 ---LEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLTMNKGSISFKK---VALP 350

Query: 176 NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHN 235
           +L YL  S    +     SY     N +  +DLS N  +  +      L  ++ L+  H+
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHS 409

Query: 236 NLTGVIP-----------SLDVSYNNLNGKIPPQLVELNAL 265
            L  V              LD+SY N         + L +L
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 38/152 (25%)

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
           F  L +L+LSR E +     +   L+ L  L L+ N +    P   + G  +LE L    
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENL---- 109

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS- 243
                                      KL       IG+L  ++ LN++HN +       
Sbjct: 110 ----------------------VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 244 ----------LDVSYNNLNGKIPPQLVELNAL 265
                     +D+SYN +       L  L   
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 46/235 (19%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-TL 69
            + + + +  N L+    +   N + L+ LDL   ++      +   H +  +  L  T 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA--WHGLHHLSNLILTG 89

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
           N +   S    P SF+   S             L  L   +          IG     L 
Sbjct: 90  NPIQSFS----PGSFSGLTS-------------LENLVAVETKLASLESFPIG-QLITLK 131

Query: 130 YLNLSRNEFDG-SIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTT 188
            LN++ N      +P+   +L +L  +DLS+N +       L         +  SL    
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENPQVNLSL---- 186

Query: 189 KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS 243
                             D+S N +   I  Q  +  ++  L L  N  +  I  
Sbjct: 187 ------------------DMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 38/152 (25%)

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
                 ++LS N        S  + + L++LDLS  ++     K    G  +L  L    
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNL---- 85

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS- 243
                                  L+ N +    P     LT +  L      L  +    
Sbjct: 86  ----------------------ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

Query: 244 ---------LDVSYNNLNG-KIPPQLVELNAL 265
                    L+V++N ++  K+P     L  L
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 18/163 (11%)

Query: 1   MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
           +   S    L  L  L +   + +         +TSL  L +  N    N  S+   +  
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT- 472

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
           T++ +L  L+                 +SW  F     +   L  L +S       +   
Sbjct: 473 TNLTFLD-LSK----------CQLE-QISWGVF----DTLHRLQLLNMSHNNLLF-LDSS 515

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163
                  L  L+ S N  + S         SL F +L++N + 
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 17/136 (12%)

Query: 140 GSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKP 199
           GS+   I  + ++        +L+ ++P  +     + + +  S        SYS+    
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSN-- 54

Query: 200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYN 249
            +++  +DLS  ++          L  +  L L+ N +    P          +L     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 250 NLNGKIPPQLVELNAL 265
            L       + +L  L
Sbjct: 115 KLASLESFPIGQLITL 130

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 35/275 (12%), Positives = 75/275 (27%), Gaps = 49/275 (17%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
               + L+   +          + ++  +           +       +         T 
Sbjct: 11  SSGRENLYFQGSTALRPYH---DVLSQWQRHYNADRNRWHSAWRQANSNNPQ--IETRTG 65

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
             L                      +   +      L +         P +       L 
Sbjct: 66  RALKAT----------------ADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSHLQ 107

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP---------KHLAI-GCFNLEY 179
           ++ +        +P ++     L+ L L+ N L   +P         + L+I  C  L  
Sbjct: 108 HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
           L E L      T  S + + L  +  + L    +   +P  I  L  +++L + ++ L+ 
Sbjct: 166 LPEPL----ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220

Query: 240 VIPS---------LDVSYNNLNGKIPPQLVELNAL 265
           + P+         LD+         PP       L
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 50/271 (18%), Positives = 81/271 (29%), Gaps = 75/271 (27%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE 64
              FRL +LQ + + A  L   LP  ++    L+ L L  N L           L  SI 
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---------ALPASIA 147

Query: 65  YLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY 124
            L+ L  L     +      T                      + +     +   E    
Sbjct: 148 SLNRLREL----SIRACPELT---------------------ELPEPLASTDASGEHQ-G 181

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
              L  L L       S+P+SI +L +LK L + ++ L+  +   +      LE L    
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEEL---- 234

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS- 243
                                 DL     +   PP  G    ++ L L   +    +P  
Sbjct: 235 ----------------------DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 244 ---------LDVSYNNLNGKIPPQLVELNAL 265
                    LD+       ++P  + +L A 
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 52/247 (21%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDL-YLNQLTR---NISSSPLLHLITS 62
           + +   L+ L +  N LR  LP  + ++  L+ L +    +LT     ++S+        
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 63  IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
           +  L +L  L    +   P S             I +  +L +L +        +   I 
Sbjct: 182 LVNLQSL-RLEWTGIRSLPAS-------------IANLQNLKSLKIRNSPLSA-LGPAIH 226

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH-NQLTGEIPKHLAIG-CFNLEYL 180
            + P+L  L+L       + P   G    LK L L   + L   +P    I     LE L
Sbjct: 227 -HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPL--DIHRLTQLEKL 282

Query: 181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240
                                     DL     +  +P  I +L     + +  +    +
Sbjct: 283 --------------------------DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 241 IPSLDVS 247
                V+
Sbjct: 317 DQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 28/173 (16%)

Query: 1   MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
            ++      L NLQ L +    +R +LP  + N+ +LK L +  + L+          L 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS---------ALG 222

Query: 61  TSIEYLSTLNYLVLV---SMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNI 117
            +I +L  L  L L    ++ ++P                     L  L +        +
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPI-------------FGGRAPLKRLILKDCSNLLTL 269

Query: 118 PLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL 170
           PL+I     +L  L+L        +PS I  L +   + +  +    ++ +H 
Sbjct: 270 PLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA-QLDQHR 320

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 8e-16
 Identities = 58/276 (21%), Positives = 97/276 (35%), Gaps = 39/276 (14%)

Query: 2   NSISGLFR-----LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPL 56
           N I+ +       L NLQ L++  N L          +  +  +DL  N +   I     
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTF 358

Query: 57  LHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGN 116
             L   ++ L  L    L ++   P+   I +S        + +     +++S+   +  
Sbjct: 359 KFL-EKLQTLD-LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416

Query: 117 IPLEIGVYFPRLMYLNLSRNEFDG-SIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF 175
             L   +  P L  L L++N F   S   +  +  SL+ L L  N L       L    F
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 176 NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHN 235
                                 + L+ +  + L+ N L    P     LT +R L+L+ N
Sbjct: 477 ----------------------EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

Query: 236 NLTGVIPS--------LDVSYNNLNGKIPPQLVELN 263
            LT +  +        LD+S N L    P   V L+
Sbjct: 515 RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 44/273 (16%), Positives = 87/273 (31%), Gaps = 47/273 (17%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS- 67
            L NL+ L +G++ +    P   + +  L  L LY   L+  +        + ++  L  
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 68  TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI--GVYF 125
           + N +     L+   SF                  L ++  S       +       +  
Sbjct: 131 SKNQI---RSLYLHPSF-------------GKLNSLKSIDFSSNQIF-LVCEHELEPLQG 173

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLN------SLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
             L + +L+ N     +    G          L+ LD+S N  T +I  + +      + 
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 180 LVESLMFTTKETSYSY-----------KGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVR 228
               L        + +            G   + +  +DLS   +          L  ++
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293

Query: 229 ALNLSHNNLTGVIPS----------LDVSYNNL 251
            LNL++N +  +             L++SYN L
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 40/282 (14%), Positives = 87/282 (30%), Gaps = 52/282 (18%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENI--TSLKVLDLYLNQLTRNISSSPLLHLI 60
               L    ++     G ++++         +  +S++ LDL    +  +++S     L 
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETL- 289

Query: 61  TSIEYLS-TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPL 119
             ++ L+   N +  ++      +F    +             L  L +S       +  
Sbjct: 290 KDLKVLNLAYNKINKIA----DEAFYGLDN-------------LQVLNLSYNLLG-ELYS 331

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG----EIPKHLAIGCF 175
                 P++ Y++L +N        +   L  L+ LDL  N LT          + +   
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391

Query: 176 NLEYLVESLMFTT---------KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLT 225
            L  L +  +            +     Y    +  +  + L+ N+       Q   +  
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451

Query: 226 RVRALNLSHNNLTGVIPS---------------LDVSYNNLN 252
            +  L L  N L     +               L +++N LN
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 41/273 (15%), Positives = 78/273 (28%), Gaps = 53/273 (19%)

Query: 2   NSISGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
            +++ + + L   + L +  N +R         +  L++L+L        I      +  
Sbjct: 14  CNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-- 71

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
                L  L  L L S     +                        ++    FQG     
Sbjct: 72  -----LPNLRILDLGS-----SKIY---------------------FLHPDAFQGL---- 96

Query: 121 IGVYFPRLMYLNLSRNEFDGSI--PSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE 178
                  L  L L       ++       +L +L  LDLS NQ+             +L+
Sbjct: 97  -----FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKL------TRVRALNL 232
            +  S         +  +      +    L+ N L   +    GK         +  L++
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

Query: 233 SHNNLTGVIPSLDVSYNNLNGKIPPQLVELNAL 265
           S N  T  I       N ++      L+  + +
Sbjct: 212 SGNGWTVDITGN--FSNAISKSQAFSLILAHHI 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 50/272 (18%), Positives = 86/272 (31%), Gaps = 61/272 (22%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
             N++EL +  N L       L   T L++L+L  N L               +E LSTL
Sbjct: 33  AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE----------TLDLESLSTL 82

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
             L L +     N              +     + TL+ +       +            
Sbjct: 83  RTLDLNN-----NYVQE----------LLVGPSIETLHAANNNIS-RVSCSR---GQGKK 123

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL--------- 180
            + L+ N+         G  + +++LDL  N++       LA     LE+L         
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240
           V+  +                K+  +DLS NKL   + P+      V  ++L +N L  +
Sbjct: 184 VKGQVV-------------FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI 229

Query: 241 IPS---------LDVSYNNLNGKIPPQLVELN 263
             +          D+  N  +          N
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 35/143 (24%)

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
           EI     R     ++ +    ++ S      ++K LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
           L                          +LS N L       +  L+ +R L+L++N +  
Sbjct: 63  L--------------------------NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE 94

Query: 240 VIP-----SLDVSYNNLNGKIPP 257
           ++      +L  + NN++ ++  
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSC 116

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 36/132 (27%)

Query: 141 SIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPL 200
           +I     + N  K   ++ + L  +    L    +N++ L                    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKEL-------------------- 39

Query: 201 NKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLN 252
                 DLS N L       +   T++  LNLS N L   +         +LD++ N + 
Sbjct: 40  ------DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ 93

Query: 253 G-KIPPQLVELN 263
              + P +  L+
Sbjct: 94  ELLVGPSIETLH 105

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 45/146 (30%)

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP--KHLAIG 173
                +      +  L+LS N       + +     L+ L+LS N L  E    + L+  
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESLS-- 80

Query: 174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS 233
              L  L                          DL+ N +      ++     +  L+ +
Sbjct: 81  --TLRTL--------------------------DLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 234 HNNLTGVIPS-------LDVSYNNLN 252
           +NN++ V  S       + ++ N + 
Sbjct: 108 NNNISRVSCSRGQGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 36/253 (14%), Positives = 76/253 (30%), Gaps = 62/253 (24%)

Query: 32  ENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-TLNYLVLVSMLHFPNSFTITMSW 90
           +N    K+  +  + L + ++S  L     +++ L  + N L  +S              
Sbjct: 7   QNGNRYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQISAADLAPFT------ 58

Query: 91  RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLN 150
                       L  L +S       + LE       L  L+L+ N         +    
Sbjct: 59  -----------KLELLNLSSNVLYETLDLE---SLSTLRTLDLNNNYV-----QELLVGP 99

Query: 151 SLKFLDLSHNQLTGEIPKHLAIGCFNLEYL---------VESLMFTTKETSYSYKGKPLN 201
           S++ L  ++N ++  +           + +         +  L                +
Sbjct: 100 SIETLHAANNNIS-RVSCSRGQ---GKKNIYLANNKITMLRDLDEGC-----------RS 144

Query: 202 KMYGIDLSCNKLVG-EIPPQIGKLTRVRALNLSHNNLTGVIPS--------LDVSYNNLN 252
           ++  +DL  N++              +  LNL +N +  V           LD+S N L 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 253 GKIPPQLVELNAL 265
             + P+      +
Sbjct: 205 -FMGPEFQSAAGV 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 44/281 (15%), Positives = 82/281 (29%), Gaps = 79/281 (28%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL---------I 60
             N++EL +  N L       L   T L++L+L  N L   +    L  L         +
Sbjct: 33  AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
             +    ++  L   +     N+ +                               +   
Sbjct: 93  QELLVGPSIETLHAAN-----NNIS------------------------------RVSCS 117

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180
                     + L+ N+         G  + +++LDL  N++       LA     LE+L
Sbjct: 118 R---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 181 ---------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN 231
                    V+  +                K+  +DLS NKL   + P+      V  ++
Sbjct: 175 NLQYNFIYDVKGQVV-------------FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 232 LSHNNLTGVIPS---------LDVSYNNLNGKIPPQLVELN 263
           L +N L  +  +          D+  N  +          N
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 34/151 (22%)

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
           EI     R     ++ +    ++ S      ++K LDLS N L+      LA     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
           L                          +LS N L       +  L+ +R L+L++N +  
Sbjct: 63  L--------------------------NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE 94

Query: 240 VIP-----SLDVSYNNLNGKIPPQLVELNAL 265
           ++      +L  + NN++     +      +
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSRGQGKKNI 125

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 7e-09
 Identities = 34/276 (12%), Positives = 86/276 (31%), Gaps = 48/276 (17%)

Query: 2   NSISGL--FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL 59
           N+IS +   R +  + +++  N +           + ++ LDL LN++   ++ + L   
Sbjct: 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAAS 167

Query: 60  ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPL 119
             ++E+L+ L Y  +                            L TL +S       +  
Sbjct: 168 SDTLEHLN-LQYNFIYD---VKGQVVFA--------------KLKTLDLSSNKLA-FMGP 208

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
           E       + +++L  N+    I  ++    +L+  DL  N       +        ++ 
Sbjct: 209 EFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 180 LVE--------------SLMFTTKETSYSYKGKP---LNKMYGIDLSCNKL-------VG 215
           + +              ++       +Y  +  P    +++  +    + L         
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 216 EIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNNL 251
            +  +     R R ++        VI  + +     
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAK 362

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 36/132 (27%)

Query: 141 SIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPL 200
           +I     + N  K   ++ + L  +    L    +N++ L                    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKEL-------------------- 39

Query: 201 NKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLN 252
                 DLS N L       +   T++  LNLS N L   +         +LD++ N + 
Sbjct: 40  ------DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ 93

Query: 253 G-KIPPQLVELN 263
              + P +  L+
Sbjct: 94  ELLVGPSIETLH 105

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 43/158 (27%)

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP-KHLAIGC 174
                +      +  L+LS N       + +     L+ L+LS N L   +  + L+   
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLS--- 80

Query: 175 FNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
             L  L                          DL+ N +      ++     +  L+ ++
Sbjct: 81  -TLRTL--------------------------DLNNNYVQ-----ELLVGPSIETLHAAN 108

Query: 235 NNLTGVIPS-------LDVSYNNLNGKIPPQLVELNAL 265
           NN++ V  S       + ++ N +           + +
Sbjct: 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRV 146

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 36/253 (14%), Positives = 75/253 (29%), Gaps = 62/253 (24%)

Query: 32  ENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-TLNYLVLVSMLHFPNSFTITMSW 90
           +N    K+  +  + L + ++S  L     +++ L  + N L  +S              
Sbjct: 7   QNGNRYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQIS----AADLAPFTK- 59

Query: 91  RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLN 150
                       L  L +S       + LE       L  L+L+ N         +    
Sbjct: 60  ------------LELLNLSSNVLYETLDLE---SLSTLRTLDLNNNYV-----QELLVGP 99

Query: 151 SLKFLDLSHNQLTGEIPKHLAIGCFNLEYL---------VESLMFTTKETSYSYKGKPLN 201
           S++ L  ++N ++              + +         +  L                +
Sbjct: 100 SIETLHAANNNISRVSCSRGQ----GKKNIYLANNKITMLRDLDEGC-----------RS 144

Query: 202 KMYGIDLSCNKLVG-EIPPQIGKLTRVRALNLSHNNLTGVIPS--------LDVSYNNLN 252
           ++  +DL  N++              +  LNL +N +  V           LD+S N L 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 253 GKIPPQLVELNAL 265
             + P+      +
Sbjct: 205 -FMGPEFQSAAGV 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 21/245 (8%), Positives = 58/245 (23%), Gaps = 18/245 (7%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL----- 59
                   +  + +  N L   +   L    +L+  DL  N                   
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 60  -----ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114
                +  +   +     V     +         +    R+        A L       +
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
             +  E      R   ++  + ++   I        +   L+     L  ++        
Sbjct: 327 -RLECER-ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR--- 381

Query: 175 FNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV-GEIPPQIGKLTRVRALNLS 233
                L  +L     +    +  +  + +  +     +     +  Q  +   +R  ++ 
Sbjct: 382 -AHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMY 440

Query: 234 HNNLT 238
            +  T
Sbjct: 441 QHKET 445

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.0 bits (175), Expect = 2e-14
 Identities = 58/268 (21%), Positives = 106/268 (39%), Gaps = 41/268 (15%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISS-SPLLHL- 59
             IS L  L NL+EL++  +++    P  L N+T +  L+L  N    ++S  S +  L 
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158

Query: 60  --------ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKK 111
                   +  +  ++ L  L     L    +    +S      P+ S   L        
Sbjct: 159 YLTVTESKVKDVTPIANLTDLY---SLSLNYNQIEDIS------PLASLTSLHYFTAYVN 209

Query: 112 FFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171
                 P+       RL  L +  N+     P  + +L+ L +L++  NQ++  I    A
Sbjct: 210 QITDITPVA---NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN---A 260

Query: 172 IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN 231
           +   +L  L    + + + +  S     L+++  + L+ N+L  E    IG LT +  L 
Sbjct: 261 VK--DLTKLKMLNVGSNQISDISVLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 232 LSHNNLTGVIP--------SLDVSYNNL 251
           LS N++T + P        S D +   +
Sbjct: 318 LSQNHITDIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 6e-12
 Identities = 52/274 (18%), Positives = 86/274 (31%), Gaps = 49/274 (17%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
           N I     L       +    +   +    E + S+  L +   ++            I 
Sbjct: 13  NQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS----------IQ 60

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI 121
            IEYL+ L YL L       N  T          P+ +   L  LY+          L+ 
Sbjct: 61  GIEYLTNLEYLNLNG-----NQITDI-------SPLSNLVKLTNLYIGTNKITDISALQ- 107

Query: 122 GVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV 181
                 L  L L+ +      P  + +L  +  L+L  N         L+     L YL 
Sbjct: 108 --NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLS-NMTGLNYLT 161

Query: 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI 241
              +  +K    +     L  +Y + L+ N++    P  +  LT +       N +T + 
Sbjct: 162 ---VTESKVKDVTPIAN-LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 242 P--------SLDVSYNNLNGKIP----PQLVELN 263
           P        SL +  N +    P     QL  L 
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLE 249

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 54/244 (22%)

Query: 4   ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL---- 59
           +S L  +  L  L +  + ++   P  + N+T L  L L  NQ+      + L  L    
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFT 205

Query: 60  -----ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114
                IT I  ++ +  L  + + +  N  T          P+ +   L  L +      
Sbjct: 206 AYVNQITDITPVANMTRLNSLKIGN--NKITDLS-------PLANLSQLTWLEIGTNQIS 256

Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
               ++      +L  LN+  N+   S  S + +L+ L  L L++NQL  E  + +  G 
Sbjct: 257 DINAVK---DLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIG-GL 310

Query: 175 FNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
            NL  L                           LS N +    P  +  L+++ + + ++
Sbjct: 311 TNLTTL--------------------------FLSQNHITDIRP--LASLSKMDSADFAN 342

Query: 235 NNLT 238
             + 
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 46/270 (17%), Positives = 95/270 (35%), Gaps = 87/270 (32%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
            SI G+  L NL+ L++  N +    P  L N+  L  L +  N++T           I+
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD----------IS 104

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI 121
           +++ L+ L  L L                        +  +++ +           PL  
Sbjct: 105 ALQNLTNLRELYL------------------------NEDNISDI----------SPLA- 129

Query: 122 GVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP-KHLAIGCFNLEYL 180
                ++  LNL  N    S  S + ++  L +L ++ +++    P  +L     +L  L
Sbjct: 130 --NLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLT----DLYSL 182

Query: 181 ---------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN 231
                    +  L               L  ++      N++    P  +  +TR+ +L 
Sbjct: 183 SLNYNQIEDISPL-------------ASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227

Query: 232 LSHNNLTGVIP--------SLDVSYNNLNG 253
           + +N +T + P         L++  N ++ 
Sbjct: 228 IGNNKITDLSPLANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 25/172 (14%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL-- 59
             IS L  L +L       N +    P  + N+T L  L +  N++T     + L  L  
Sbjct: 190 EDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTW 247

Query: 60  -------ITSIEYLSTLNYLVLVSMLHFPNSFT-ITMSWRPFRMPIQSHWHLATLYVSKK 111
                  I+ I  +  L  L ++++    N  + I+         + +   L +L+++  
Sbjct: 248 LEIGTNQISDINAVKDLTKLKMLNVGS--NQISDIS--------VLNNLSQLNSLFLNNN 297

Query: 112 FFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163
                    IG     L  L LS+N      P  +  L+ +   D ++  + 
Sbjct: 298 QLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 23/152 (15%)

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF-NLEYLVES 183
               +   L +      +     +L S+  L ++  ++   I     I    NLEYL  +
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ---GIEYLTNLEYLNLN 74

Query: 184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP- 242
               T  +  S     L K+  + +  NK+       +  LT +R L L+ +N++ + P 
Sbjct: 75  GNQITDISPLSN----LVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPL 128

Query: 243 -------SLDVSYNNLNGKIPP--QLVELNAL 265
                  SL++  N+    + P   +  LN L
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 53/278 (19%), Positives = 92/278 (33%), Gaps = 76/278 (27%)

Query: 2   NSISGL-FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL- 59
           N+++ L      L+ L +  N L  +LP     +  L +    L  L    S    L + 
Sbjct: 71  NNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIF 129

Query: 60  ---ITSI-EYLSTLNYLVLVSML--HFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFF 113
              +TS+      L  L +        P   +                 L  L+      
Sbjct: 130 GNQLTSLPVLPPGLQELSVSDNQLASLPALPS----------------ELCKLWAYNNQL 173

Query: 114 QGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG 173
             ++P+        L  L++S N+   S+P+       L  L   +N+LT  +P   +  
Sbjct: 174 T-SLPMLPS----GLQELSVSDNQL-ASLPTLPS---ELYKLWAYNNRLT-SLPALPS-- 221

Query: 174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS 233
              L+ L                           +S N+L   +P    +L     L +S
Sbjct: 222 --GLKEL--------------------------IVSGNRL-TSLPVLPSELKE---LMVS 249

Query: 234 HNNLTGV------IPSLDVSYNNLNGKIPPQLVELNAL 265
            N LT +      + SL V  N L  ++P  L+ L++ 
Sbjct: 250 GNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSE 286

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 39/141 (27%)

Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFT 187
              LN+  +    ++P  +     +  L +  N LT  +P         L  L       
Sbjct: 42  NAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPP----ELRTL------- 86

Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS---L 244
                              ++S N+L   +P     L  +   +    +L  +      L
Sbjct: 87  -------------------EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

Query: 245 DVSYNNLNGKIPPQLVELNAL 265
            +  N L   +P     L  L
Sbjct: 127 WIFGNQLT-SLPVLPPGLQEL 146

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 6e-10
 Identities = 36/173 (20%), Positives = 53/173 (30%), Gaps = 37/173 (21%)

Query: 102 HLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ 161
           H+ TL +       ++P         L  L +S N+   S+P     L  L         
Sbjct: 62  HITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 162 LTGEIP--KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP 219
           L         L I    L  L                      +  + +S N+L   +P 
Sbjct: 116 LPALPSGLCKLWIFGNQLTSLPVL----------------PPGLQELSVSDNQL-ASLPA 158

Query: 220 QIGKLTRVRALNLSHNNLTGVIP-------SLDVSYNNLNGKIPPQLVELNAL 265
              +L +   L   +N LT  +P        L VS N L   +P    EL  L
Sbjct: 159 LPSELCK---LWAYNNQLT-SLPMLPSGLQELSVSDNQLA-SLPTLPSELYKL 206

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 36/154 (23%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
              LQEL +  N L  +LP      + L  L  Y N+LT       L  L + ++ L  +
Sbjct: 180 PSGLQELSVSDNQLA-SLP---TLPSELYKLWAYNNRLTS------LPALPSGLKEL-IV 228

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
           +   L S    P   +                 L  L VS      ++P+        L+
Sbjct: 229 SGNRLTS---LPVLPS----------------ELKELMVSGNRLT-SLPMLPS----GLL 264

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163
            L++ RN+    +P S+  L+S   ++L  N L+
Sbjct: 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 47/253 (18%), Positives = 70/253 (27%), Gaps = 69/253 (27%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR-----------NISSSPLLH 58
              LQEL +  N L  +LP      + L  L  Y NQLT            ++S + L  
Sbjct: 140 PPGLQELSVSDNQLA-SLP---ALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195

Query: 59  LITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIP 118
           L T    L  L       +   P   +                 L  L VS      ++P
Sbjct: 196 LPTLPSELYKLWAYNN-RLTSLPALPS----------------GLKELIVSGNRLT-SLP 237

Query: 119 LEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE 178
           +        L  L +S N    S+P        L  L +  NQLT  +P+ L     +  
Sbjct: 238 VLPS----ELKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLI-HLSSET 287

Query: 179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238
            +                          +L  N L       + ++T     +       
Sbjct: 288 TV--------------------------NLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 239 GVIPSLDVSYNNL 251
               S       L
Sbjct: 322 MAGASAPRETRAL 334

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 1e-13
 Identities = 54/271 (19%), Positives = 84/271 (30%), Gaps = 27/271 (9%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
            R+L+ L    +       +       +K L L    +      S +L     +  +S L
Sbjct: 42  GRSLEYLLKRVDTEADLGQF----TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
             L L +        T T               L    VS       +        P L 
Sbjct: 98  QELTLEN-----LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE----SLM 185
            L++++          +    +L  LDLS N   GE     A+       L      +  
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 186 FTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIP-- 242
             T     S       ++ G+DLS N L            +++ +LNLS   L  V    
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272

Query: 243 -----SLDVSYNNLNGKIP-----PQLVELN 263
                 LD+SYN L+   P     PQ+  L+
Sbjct: 273 PAKLSVLDLSYNRLDR-NPSPDELPQVGNLS 302

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 49/246 (19%), Positives = 77/246 (31%), Gaps = 27/246 (10%)

Query: 1   MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
           +     +  +  LQEL +   ++ GT P  L   T   +  L L  ++     + L  L 
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
             ++    +  +     L+F                      L+TL +S     G   L 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFP------------ALSTLDLSDNPELGERGLI 192

Query: 121 ---IGVYFPRLMYLNLSRNEF---DGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
                + FP L  L L         G   +       L+ LDLSHN L            
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 175 FNLEYL-VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS 233
             L  L +                    K+  +DLS N+L  +  P   +L +V  L+L 
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLP------AKLSVLDLSYNRL--DRNPSPDELPQVGNLSLK 304

Query: 234 HNNLTG 239
            N    
Sbjct: 305 GNPFLD 310

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 54/288 (18%), Positives = 95/288 (32%), Gaps = 34/288 (11%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
           +R++  L +  ++    L    + ++S++ L+L    L R   S   +  ++S       
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 70  NYLVLV--SMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSK----------------- 110
              VL   S           +          +   L     S+                 
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 111 ----KFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI 166
               +F+       +     ++  + +  ++      S    L SL+FLDLS N +  E 
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 167 PKHLAI--GCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKL 224
            K+ A      +L+ LV S                L  +  +D+S N     +P      
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWP 409

Query: 225 TRVRALNLSHNNLTGV-------IPSLDVSYNNLNGKIPPQLVELNAL 265
            ++R LNLS   +  V       +  LDVS NNL+      L  L  L
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 44/256 (17%), Positives = 90/256 (35%), Gaps = 41/256 (16%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
               ++ LH+    L   L      +  +K + +  +++   +  S   HL  S+E+L  
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL-KSLEFLD- 340

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV--YFP 126
           L+  ++V      ++                   L TL +S+   + ++     +     
Sbjct: 341 LSENLMVEEYLKNSACKGAWP------------SLQTLVLSQNHLR-SMQKTGEILLTLK 387

Query: 127 RLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMF 186
            L  L++SRN F   +P S      ++FL+LS   +   +   +      LE L  S   
Sbjct: 388 NLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ---TLEVLDVS--- 439

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV------ 240
                +       L ++  + +S NKL  +  P       +  + +S N L  V      
Sbjct: 440 ---NNNLDSFSLFLPRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFD 494

Query: 241 ----IPSLDVSYNNLN 252
               +  + +  N  +
Sbjct: 495 RLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 50/264 (18%), Positives = 88/264 (33%), Gaps = 28/264 (10%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
              NLQ L + ++ +         ++ SL+ LDL  N L+ ++SSS           LS+
Sbjct: 48  ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGP-------LSS 99

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
           L YL L+      N +        F     +  +L TL +        I          L
Sbjct: 100 LKYLNLMG-----NPYQTLGVTSLF----PNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL-------- 180
             L +           S+  +  +  L L  ++    + +  A    ++ YL        
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209

Query: 181 -VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
             +       E S   K          D S N+L+ ++   I +L+ V   + + N L  
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDCTLNGLGD 268

Query: 240 VIPSLDVSYNNLNGKIPPQLVELN 263
             PS     + L       +  L+
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLH 292

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 36/289 (12%), Positives = 79/289 (27%), Gaps = 34/289 (11%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE-YLST 68
           L +L+ L +  N L          ++SLK L+L  N       +S   +L       +  
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 69  LNYLVLVSMLHFPNSF---TITMSWRPFRM----PIQSHWHLATLYVSKKFFQGNIPLEI 121
           +     +  + F        + +     R      ++S   +  L +        +    
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIF 191

Query: 122 GVYFPRLMYLNLSRNEFDGSIPSSIG-----------DLNSLKFLDLSHNQLTGEIPKHL 170
                 + YL L          S +                    D S N+L   +   L
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 171 AIGCFNLEYL----VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR 226
            +     +      +     +  +            +  + +    L  ++      L +
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 227 VRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQLVELNAL 265
           V+ + + ++ +  V  S          LD+S N +  +         A 
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 53/272 (19%), Positives = 91/272 (33%), Gaps = 48/272 (17%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
            +  L  L  L+ L + +N +       L  +T+L+ L    NQ++           IT 
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD----------ITP 216

Query: 63  IEYLSTLNYLVLVSMLHFPNSFT-ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI 121
           +  L+ L+ L L       N    I          + S  +L  L ++        PL  
Sbjct: 217 LGILTNLDELSLNG-----NQLKDIG--------TLASLTNLTDLDLANNQISNLAPLS- 262

Query: 122 GVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV 181
                +L  L L  N+     P  +  L +L  L+L+ NQL    P        NL YL 
Sbjct: 263 --GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS---NLKNLTYLT 315

Query: 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI 241
                 +  +  S     L K+  +    NK+       +  LT +  L+  HN ++ + 
Sbjct: 316 LYFNNISDISPVSS----LTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLT 369

Query: 242 P--------SLDVSYNNLNGKIPPQLVELNAL 265
           P         L ++              ++  
Sbjct: 370 PLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 58/280 (20%), Positives = 106/280 (37%), Gaps = 41/280 (14%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
            SI G+  L NL +++   N L    P  L+N+T L  + +  NQ+      + L +L  
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTG 116

Query: 62  ------SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
                  I  +  L  L  ++ L   ++    +S       +     L  L    +    
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQV-TD 169

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF 175
             PL        L  L++S N+   S  S +  L +L+ L  ++NQ++   P        
Sbjct: 170 LKPLA---NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG---ILT 221

Query: 176 NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHN 235
           NL+ L  +        + +     L  +  +DL+ N++    P  +  LT++  L L  N
Sbjct: 222 NLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275

Query: 236 NLTGVIP--------SLDVSYNNLNGKIP----PQLVELN 263
            ++ + P        +L+++ N L    P      L  L 
Sbjct: 276 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 315

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 52/274 (18%), Positives = 93/274 (33%), Gaps = 43/274 (15%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL-- 59
           + I+ L  L NL EL +  N L       L ++T+L  LDL  NQ++     S L  L  
Sbjct: 212 SDITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 269

Query: 60  -------ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF 112
                  I++I  L+ L  L  + +    N             PI +  +L  L +    
Sbjct: 270 LKLGANQISNISPLAGLTALTNLELNE--NQLEDIS-------PISNLKNLTYLTLYFNN 320

Query: 113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI 172
                P+       +L  L    N+   S  SS+ +L ++ +L   HNQ++   P     
Sbjct: 321 ISDISPVS---SLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP---LA 372

Query: 173 GCFNLEYL-VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN 231
               +  L +    +T    +Y       N +  +      L+   P  I         +
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT---GALI--APATISDGGSYTEPD 427

Query: 232 LSHNNLTGV---------IPSLDVSYNNLNGKIP 256
           ++ N  +             ++       +G + 
Sbjct: 428 ITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 47/261 (18%), Positives = 91/261 (34%), Gaps = 49/261 (18%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
           N I     L    +  +G  ++  T+     ++  +  L      +            I 
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS----------ID 62

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFT-ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
            +EYL+ L  +   +     N  T IT        P+++   L  + ++        PL 
Sbjct: 63  GVEYLNNLTQINFSN-----NQLTDIT--------PLKNLTKLVDILMNNNQIADITPLA 109

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180
                  L  L L  N+   +    + +L +L  L+LS N ++         G  +L+ L
Sbjct: 110 ---NLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDISALS---GLTSLQQL 161

Query: 181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240
                 T  +         L  +  +D+S NK+       + KLT + +L  ++N ++ +
Sbjct: 162 SFGNQVTDLKPL-----ANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 214

Query: 241 IP--------SLDVSYNNLNG 253
            P         L ++ N L  
Sbjct: 215 TPLGILTNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 21/132 (15%)

Query: 144 SSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKM 203
            +   L       L    +T  + +        +  L    +         Y    LN +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVEY----LNNL 70

Query: 204 YGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLNGKI 255
             I+ S N+L    P  +  LT++  + +++N +  + P         L +  N +    
Sbjct: 71  TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 128

Query: 256 P----PQLVELN 263
           P      L  L 
Sbjct: 129 PLKNLTNLNRLE 140

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 45/255 (17%), Positives = 87/255 (34%), Gaps = 57/255 (22%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
           +L++L+ L   +N           ++ SL+ LDL  N L+     S      TS++YL  
Sbjct: 323 KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD- 379

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
           L++  +++M    ++F                  L  L       +      + +    L
Sbjct: 380 LSFNGVITM---SSNFLGLEQ-------------LEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTT 188
           +YL++S      +       L+SL+ L ++ N         +     NL +L        
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-------- 475

Query: 189 KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIPS---- 243
                             DLS  +L  ++ P     L+ ++ LN++ N L  V       
Sbjct: 476 ------------------DLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 244 ------LDVSYNNLN 252
                 + +  N  +
Sbjct: 517 LTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 51/283 (18%), Positives = 92/283 (32%), Gaps = 39/283 (13%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPW-CLENITSLKVLDLYLNQLTRN-----ISSSPLLH 58
            G F+   L +L +  N     +   C++ +  L+V  L L +            S L  
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 59  LITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRM---------PIQSHWHLATLYVS 109
           L         L YL    +    + F    +   F +             ++    L + 
Sbjct: 254 LCNLTIEEFRLAYLDY-YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 110 KKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG-EIPK 168
              F     L+       L  L  + N+  G+  S +  L SL+FLDLS N L+      
Sbjct: 313 NCKFGQFPTLK----LKSLKRLTFTSNKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366

Query: 169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI--GKLTR 226
               G  +L+YL    +      + S     L ++  +D   + L  ++        L  
Sbjct: 367 QSDFGTTSLKYLD---LSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRN 422

Query: 227 VRALNLSHNNLTGVIPS----------LDVSYNNLNGKIPPQL 259
           +  L++SH +                 L ++ N+      P +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 46/247 (18%), Positives = 78/247 (31%), Gaps = 49/247 (19%)

Query: 2   NSISGLFRLRNLQELHMGANDLR--GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL 59
            +      L +L+ L +  N L   G         TSLK LDL  N +           +
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---------TM 388

Query: 60  ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPL 119
            ++   L  L +L         ++      +  F         L  L +S    +     
Sbjct: 389 SSNFLGLEQLEHLDFQH-----SNLKQMSEFSVFLSLRN----LIYLDISHTHTR-VAFN 438

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE 178
            I      L  L ++ N F  +    I  +L +L FLDLS  QL  ++         +L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 497

Query: 179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238
            L                          +++ N+L         +LT ++ + L  N   
Sbjct: 498 VL--------------------------NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

Query: 239 GVIPSLD 245
              P +D
Sbjct: 532 CSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
           FP L  L+LSR E       +   L+ L  L L+ N +   +      G  +L+ LV   
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 109

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKL-VGEIPPQIGKLTRVRALNLSHNNLTGVIP- 242
                  ++      L  +  ++++ N +   ++P     LT +  L+LS N +  +   
Sbjct: 110 TNLASLENFPIGH--LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 243 -------------SLDVSYNNLNGKIPP 257
                        SLD+S N +N  I P
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 44/310 (14%), Positives = 92/310 (29%), Gaps = 53/310 (17%)

Query: 5   SGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI 63
            G F  L +LQ+L     +L     + + ++ +LK L++  N +            +T++
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNL 151

Query: 64  EYLS-TLNYLVLVSMLHFPNSFTITMSWRPFRM---PIQS-------HWHLATLYVSKKF 112
           E+L  + N +  +          + +      +   P+            L  L +   F
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLN--------SLKFLDLSHNQLTG 164
              N+          L    L   EF         D +        +++   L++     
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 165 EIPKHLAIGCFNLEYL---------VESLMFTTKETSYSYKGKPLNKMYGI--------D 207
           +    L     N+            V+   +               +   +         
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 208 LSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV------------IPSLDVSYNNLNGKI 255
            + NK  G    ++  L  +  L+LS N L+              +  LD+S+N +   +
Sbjct: 332 FTSNKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 256 PPQLVELNAL 265
               + L  L
Sbjct: 389 SSNFLGLEQL 398

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 46/235 (19%), Positives = 76/235 (32%), Gaps = 46/235 (19%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-TL 69
            + + L +  N LR    +   +   L+VLDL   ++   I       L + +  L  T 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSL-SHLSTLILTG 85

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
           N +  +++  F                      L  L   +          IG +   L 
Sbjct: 86  NPIQSLALGAFSGLS-----------------SLQKLVAVETNLASLENFPIG-HLKTLK 127

Query: 130 YLNLSRNEF-DGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTT 188
            LN++ N      +P    +L +L+ LDLS N++   I          +  L  SL    
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSL---- 182

Query: 189 KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS 243
                             DLS N +   I P   K  R+  L L +N  +  +  
Sbjct: 183 ------------------DLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 46/276 (16%), Positives = 88/276 (31%), Gaps = 40/276 (14%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-T 68
           L +L  L +  N ++         ++SL+ L      L  ++ + P+ HL  +++ L+  
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL-KTLKELNVA 132

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
            N +    +  + ++ T                +L  L +S    Q +I         ++
Sbjct: 133 HNLIQSFKLPEYFSNLT----------------NLEHLDLSSNKIQ-SIYCTDLRVLHQM 175

Query: 129 ----MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL---- 180
               + L+LS N  +  I         L  L L +N  +  + K    G   LE      
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKL---VGEIPPQIGKLTRVRALNLSHNNL 237
            E       E       + L  +   +     L   + +I      LT V + +L    +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 238 TGVIP--------SLDVSYNNLNGKIPPQLVELNAL 265
             V           L++           +L  L  L
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 35/169 (20%)

Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176
           IP  +         L+LS N        S      L+ LDLS  ++   I         +
Sbjct: 22  IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 177 LEYL---------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRV 227
           L  L         +    F             L+ +  +      L       IG L  +
Sbjct: 78  LSTLILTGNPIQSLALGAF-----------SGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 228 RALNLSHNNLTGVIPS-----------LDVSYNNLNGKIPPQLVELNAL 265
           + LN++HN +                 LD+S N +       L  L+ +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 63/265 (23%)

Query: 5   SGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL---- 59
            G+F     L  L M  N+L        +  TSL+ L L  N+LT  +  S +  L    
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHAN 192

Query: 60  -----ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114
                ++++     +  L         NS           +    +  L  L +      
Sbjct: 193 VSYNLLSTLAIPIAVEELDASH-----NSIN--------VVRGPVNVELTILKLQHNNLT 239

Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
            +    +   +P L+ ++LS NE +  +      +  L+ L +S+N+L   +  +     
Sbjct: 240 -DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PI 294

Query: 175 FNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
             L+ L                          DLS N L+  +     +  R+  L L H
Sbjct: 295 PTLKVL--------------------------DLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 235 NNLTGV-------IPSLDVSYNNLN 252
           N++  +       + +L +S+N+ +
Sbjct: 328 NSIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 48/264 (18%), Positives = 84/264 (31%), Gaps = 80/264 (30%)

Query: 8   FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS 67
             L N + +    + +R      L++   +++L+L   Q+   I +        +  Y  
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTY-------AFAYAH 93

Query: 68  TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPR 127
           T+  L +       N+                                 +P  +    P 
Sbjct: 94  TIQKLYMGF-----NAIR------------------------------YLPPHVFQNVPL 118

Query: 128 LMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMF 186
           L  L L RN+   S+P  I  +   L  L +S+N L   I         +L+ L      
Sbjct: 119 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL------ 170

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---- 242
                                LS N+L   +      +  +   N+S+N L+ +      
Sbjct: 171 --------------------QLSSNRLT-HVDL--SLIPSLFHANVSYNLLSTLAIPIAV 207

Query: 243 -SLDVSYNNLNGKIPPQLVELNAL 265
             LD S+N++N    P  VEL  L
Sbjct: 208 EELDASHNSINVVRGPVNVELTIL 231

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 22/149 (14%), Positives = 51/149 (34%), Gaps = 34/149 (22%)

Query: 131 LNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL---------V 181
           +++     D         LN+ K +   ++ +  ++P  L      +E L         +
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGV 240
           ++  F              + +  + +  N +   +PP +   +  +  L L  N+L+ +
Sbjct: 85  DTYAF-----------AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 241 IP----------SLDVSYNNLNGKIPPQL 259
                       +L +S NNL  +I    
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 50/246 (20%), Positives = 85/246 (34%), Gaps = 45/246 (18%)

Query: 5   SGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI 63
            G+F  L NL +L +  N +   L +  +++ +LK L++  N L   IS      L  S+
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGL-NSL 154

Query: 64  EYLS-TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
           E L+     L  +       + +         +       L  L +        I     
Sbjct: 155 EQLTLEKCNLTSIP----TEALS--------HLH-----GLIVLRLRHLNIN-AIRDYSF 196

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL-- 180
               RL  L +S   +  ++  +     +L  L ++H  LT  +P         L +L  
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNL 255

Query: 181 -------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNL 232
                  +E  M              L ++  I L   +L   + P     L  +R LN+
Sbjct: 256 SYNPISTIEGSML-----------HELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNV 303

Query: 233 SHNNLT 238
           S N LT
Sbjct: 304 SGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 48/257 (18%), Positives = 87/257 (33%), Gaps = 60/257 (23%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYL 66
                +L+EL +  N +    P    N+ +L+ L L  N+L   I       L +++  L
Sbjct: 52  FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGL-SNLTKL 109

Query: 67  S-TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYF 125
             + N +V++        F             Q  ++L +L V        I        
Sbjct: 110 DISENKIVILL----DYMF-------------QDLYNLKSLEVGDNDLV-YISHRAFSGL 151

Query: 126 PRLMYLNLSRNEFDGSIPS-SIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
             L  L L +     SIP+ ++  L+ L  L L H  +   I  +     + L+ L    
Sbjct: 152 NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVL---- 205

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-- 242
                                 ++S    +  + P       + +L+++H NLT V    
Sbjct: 206 ----------------------EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 243 --------SLDVSYNNL 251
                    L++SYN +
Sbjct: 244 VRHLVYLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 34/154 (22%)

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL---- 180
                 L+L +N               L+ L+L+ N ++  +        FNL  L    
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 181 -----VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSH 234
                +   +F             L+ +  +D+S NK+V  +   +   L  +++L +  
Sbjct: 90  NRLKLIPLGVF-----------TGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGD 137

Query: 235 NNLTGVIP----------SLDVSYNNLNGKIPPQ 258
           N+L  +             L +   NL   IP +
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTE 170

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 45/159 (28%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE 64
                  NL  L +   +L       + ++  L+ L+L  N ++  I  S L        
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHE------ 270

Query: 65  YLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY 124
            L  L  + LV                                V    F+G         
Sbjct: 271 -LLRLQEIQLVG-----GQLA---------------------VVEPYAFRG--------- 294

Query: 125 FPRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQL 162
              L  LN+S N+   ++  S+   + +L+ L L  N L
Sbjct: 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 63/265 (23%)

Query: 5   SGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL---- 59
            G+F     L  L M  N+L        +  TSL+ L L  N+LT  +  S +  L    
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHAN 198

Query: 60  -----ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114
                ++++     +  L         NS           +    +  L  L +      
Sbjct: 199 VSYNLLSTLAIPIAVEELDASH-----NSIN--------VVRGPVNVELTILKLQHNNLT 245

Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
            +    +   +P L+ ++LS NE +  +      +  L+ L +S+N+L   +  +     
Sbjct: 246 -DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PI 300

Query: 175 FNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
             L+ L                          DLS N L+  +     +  R+  L L H
Sbjct: 301 PTLKVL--------------------------DLSHNHLL-HVERNQPQFDRLENLYLDH 333

Query: 235 NNLTGV-------IPSLDVSYNNLN 252
           N++  +       + +L +S+N+ +
Sbjct: 334 NSIVTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 56/269 (20%), Positives = 101/269 (37%), Gaps = 53/269 (19%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-T 68
              +Q+L+MG N +R   P   +N+  L VL L  N L+ ++      +    +  LS +
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT-PKLTTLSMS 155

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
            N L  +    F                 Q+   L  L +S      ++ L +    P L
Sbjct: 156 NNNLERIEDDTF-----------------QATTSLQNLQLSSNRLT-HVDLSL---IPSL 194

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL-VESLMFT 187
            + N+S N       S++    +++ LD SHN +   +   +      L  L ++    T
Sbjct: 195 FHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLT 245

Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIPS--- 243
                          +  +DLS N+L  +I      K+ R+  L +S+N L   +     
Sbjct: 246 DTAWL-----LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 244 -------LDVSYNNLNGKIPPQLVELNAL 265
                  LD+S+N+L   +     + + L
Sbjct: 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRL 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 48/263 (18%), Positives = 84/263 (31%), Gaps = 80/263 (30%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
            L N + +    + +R      L++   +++L+L   Q+   I +        +  Y  T
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTY-------AFAYAHT 100

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
           +  L +       N+                                 +P  +    P L
Sbjct: 101 IQKLYMGF-----NAIR------------------------------YLPPHVFQNVPLL 125

Query: 129 MYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFT 187
             L L RN+   S+P  I  +   L  L +S+N L   I         +L+ L       
Sbjct: 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL------- 176

Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----- 242
                               LS N+L   +      +  +   N+S+N L+ +       
Sbjct: 177 -------------------QLSSNRLT-HVDL--SLIPSLFHANVSYNLLSTLAIPIAVE 214

Query: 243 SLDVSYNNLNGKIPPQLVELNAL 265
            LD S+N++N    P  VEL  L
Sbjct: 215 ELDASHNSINVVRGPVNVELTIL 237

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 33/141 (23%)

Query: 131 LNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL---------V 181
           +++     D         LN+ K +   ++ +  ++P  L      +E L         +
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGV 240
           ++  F              + +  + +  N +   +PP +   +  +  L L  N+L+ +
Sbjct: 91  DTYAF-----------AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL 138

Query: 241 IPS----------LDVSYNNL 251
                        L +S NNL
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNL 159

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 47/251 (18%), Positives = 86/251 (34%), Gaps = 55/251 (21%)

Query: 12  NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNY 71
           +   L + +N L+       + +T L  L L  N L+     S      TS++YL  L++
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD-LSF 87

Query: 72  LVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYL 131
             +++M    ++F                  L  L       +      + +    L+YL
Sbjct: 88  NGVITM---SSNFLGLEQ-------------LEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 132 NLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET 191
           ++S      +       L+SL+ L ++ N         +     NL +L           
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL----------- 180

Query: 192 SYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIP-------- 242
                          DLS  +L  ++ P     L+ ++ LN+SHNN   +          
Sbjct: 181 ---------------DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 243 --SLDVSYNNL 251
              LD S N++
Sbjct: 225 LQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 42/236 (17%), Positives = 69/236 (29%), Gaps = 73/236 (30%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYL 66
            F   +L+ L +  N +  T+      +  L+ LD   + L +    S  L        L
Sbjct: 74  DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-------L 125

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFP 126
             L YL +                        SH H          F G           
Sbjct: 126 RNLIYLDI------------------------SHTHTRVA--FNGIFNG---------LS 150

Query: 127 RLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLM 185
            L  L ++ N F  +    I  +L +L FLDLS  QL  ++         +L+ L     
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVL----- 204

Query: 186 FTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGV 240
                                ++S N     +       L  ++ L+ S N++   
Sbjct: 205 ---------------------NMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 42/147 (28%)

Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT-GEIPKHLAIGCF 175
           +P  I         L L  N+           L  L  L LS N L+          G  
Sbjct: 22  VPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 176 NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHN 235
           +L+YL                          DLS N ++  +      L ++  L+  H+
Sbjct: 79  SLKYL--------------------------DLSFNGVI-TMSSNFLGLEQLEHLDFQHS 111

Query: 236 NLTGVIP-----------SLDVSYNNL 251
           NL  +              LD+S+ + 
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHT 138

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 33/159 (20%), Positives = 44/159 (27%), Gaps = 43/159 (27%)

Query: 6   GLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE 64
            +F  LRNL  L +     R         ++SL+VL +  N    N              
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------ 173

Query: 65  YLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY 124
            L  L +L L                                 +S   F           
Sbjct: 174 -LRNLTFLDLSQ-----CQLE---------------------QLSPTAFNS--------- 197

Query: 125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163
              L  LN+S N F          LNSL+ LD S N + 
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 51/261 (19%), Positives = 85/261 (32%), Gaps = 50/261 (19%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
             +L+ L    N L   LP   +++ SL V +  L  L+       L +L  S   L  L
Sbjct: 90  PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL--LEYLGVSNNQLEKL 146

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
                                      +Q+   L  + V     +  +P       P L 
Sbjct: 147 P-------------------------ELQNSSFLKIIDVDNNSLK-KLPDLP----PSLE 176

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTK 189
           ++    N+        + +L  L  +   +N L  ++P        +LE +V       +
Sbjct: 177 FIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLP----LSLESIVAGNNILEE 229

Query: 190 ETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS---LDV 246
                     L  +  I    N L   +P     L  +   +    +L  +  S   LDV
Sbjct: 230 LPELQN----LPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284

Query: 247 SYNNLNG--KIPPQLVELNAL 265
           S N  +G  ++PP L  LNA 
Sbjct: 285 SENIFSGLSELPPNLYYLNAS 305

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 41/266 (15%), Positives = 77/266 (28%), Gaps = 65/266 (24%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
              LQE    +++L   +P   EN+ S        ++  RN           ++  L   
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
                                               L ++      ++P         L 
Sbjct: 69  LDR-----------------------------QAHELELNNLGLS-SLPELPP----HLE 94

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP--KHLAIGCFNLEYLVESLMFT 187
            L  S N     +P     L SL   + +   L+   P  ++L +    LE L E     
Sbjct: 95  SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL---- 149

Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----- 242
                     +  + +  ID+  N L  ++P     L     +   +N L  +       
Sbjct: 150 ----------QNSSFLKIIDVDNNSLK-KLPDLPPSLEF---IAAGNNQLEELPELQNLP 195

Query: 243 ---SLDVSYNNLNGKIPPQLVELNAL 265
              ++    N+L  K+P   + L ++
Sbjct: 196 FLTAIYADNNSLK-KLPDLPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 51/249 (20%), Positives = 78/249 (31%), Gaps = 35/249 (14%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
            +  L  L  L  ++   N L+ TLP    ++ +L V D YL  L     S  L  L  S
Sbjct: 229 ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQS--LTFLDVS 285

Query: 63  IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
               S L+ L        PN + +  S    R        L  L VS       +P    
Sbjct: 286 ENIFSGLSEL-------PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP 337

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182
               RL  L  S N     +P       +LK L + +N L  E P        ++E L  
Sbjct: 338 ----RLERLIASFNHL-AEVPELPQ---NLKQLHVEYNPLR-EFPDIPE----SVEDLRM 384

Query: 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP 242
           +                   +  + +  N L  E P     +     L ++   +     
Sbjct: 385 NSHLAEVPEL-------PQNLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYE 433

Query: 243 SLDVSYNNL 251
               + + L
Sbjct: 434 FAHETTDKL 442

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 42/271 (15%), Positives = 84/271 (30%), Gaps = 69/271 (25%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR----NISSSPLLHLI 60
                +++  E +   ++     P        + V  L      +     +++  L  L 
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
               +L +L      S+   P                     L +L V            
Sbjct: 88  ELPPHLESL-VASCNSLTELPELPQ----------------SLKSLLVD--NNNLK---A 125

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180
           +    P L YL +S N+ +  +P  + + + LK +D+ +N L  ++P        +LE++
Sbjct: 126 LSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFI 178

Query: 181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240
                                         N+L  E  P++  L  + A+   +N+L  +
Sbjct: 179 --------------------------AAGNNQL--EELPELQNLPFLTAIYADNNSLKKL 210

Query: 241 IPS------LDVSYNNLNGKIPPQLVELNAL 265
                    +    N L  +  P+L  L  L
Sbjct: 211 PDLPLSLESIVAGNNIL--EELPELQNLPFL 239

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 57/280 (20%), Positives = 84/280 (30%), Gaps = 82/280 (29%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR------------- 49
            +  L  L  L  ++   N L+  LP   +   SL+ +    N L               
Sbjct: 187 ELPELQNLPFLTAIYADNNSLK-KLP---DLPLSLESIVAGNNILEELPELQNLPFLTTI 242

Query: 50  NISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVS 109
              ++ L  L      L  LN      +   P                     L  L VS
Sbjct: 243 YADNNLLKTLPDLPPSLEALNVRDN-YLTDLPELPQ----------------SLTFLDVS 285

Query: 110 KKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH 169
           +  F       +    P L YLN S NE    I S      SL+ L++S+N+L  E+P  
Sbjct: 286 ENIFS-----GLSELPPNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKLI-ELPAL 335

Query: 170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRA 229
                  LE L                            S N L  E+P     L +   
Sbjct: 336 PP----RLERL--------------------------IASFNHLA-EVPELPQNLKQ--- 361

Query: 230 LNLSHNNLTGVIPSL----DVSYNNLNGKIPPQLVELNAL 265
           L++ +N L           D+  N+   ++P     L  L
Sbjct: 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 52/262 (19%)

Query: 1   MNSISGL-----FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLT------- 48
            N I+ +      R  NLQ L + +N +         ++ SL+ LDL  N L+       
Sbjct: 61  NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120

Query: 49  RNISSSPLLHL----ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLA 104
           + +SS   L+L      ++   S  ++L  + +L   N  T T                 
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT----------------- 163

Query: 105 TLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164
              + +K F G            L  L +  ++     P S+  + ++  L L   Q   
Sbjct: 164 --KIQRKDFAG---------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI- 211

Query: 165 EIPKHLAIGCFNLEYL------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP 218
            + +       ++E L      +++  F+   T  +           + ++   L  ++ 
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 219 PQIGKLTRVRALNLSHNNLTGV 240
             + +++ +  L  S N L  V
Sbjct: 271 KLLNQISGLLELEFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 5   SGLF-RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI 63
              F  L  L+EL + A+DL+   P  L++I ++  L L++ Q    +           +
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEI-------FV 218

Query: 64  EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV 123
           +  S++  L L         F+  +S       I+  +    + ++ +     + L   +
Sbjct: 219 DVTSSVECLELRDTDLDTFHFS-ELSTGETNSLIKK-FTFRNVKITDESLFQVMKLLNQI 276

Query: 124 YFPRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHN 160
               L+ L  SRN+   S+P  I   L SL+ + L  N
Sbjct: 277 --SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 42/230 (18%), Positives = 65/230 (28%), Gaps = 66/230 (28%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS-T 68
              +  L +  N L  +LP   E   SL+ LD   N+L+       L  L  S+++L   
Sbjct: 79  PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST------LPELPASLKHLDVD 128

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
            N L        P                     L  +          +P         L
Sbjct: 129 NNQLT-----MLPELPA----------------LLEYINADNNQLT-MLPELPT----SL 162

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTT 188
             L++  N+    +P       SL+ LD+S N L   +P        + E          
Sbjct: 163 EVLSVRNNQL-TFLPELPE---SLEALDVSTNLLE-SLPAVPV-RNHHSEETEIFF---- 212

Query: 189 KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238
                                 N++   IP  I  L     + L  N L+
Sbjct: 213 ------------------RCRENRIT-HIPENILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 42/280 (15%), Positives = 74/280 (26%), Gaps = 91/280 (32%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLT---RNISSSPLLH 58
           +  S   +           N+    L  CL  I     L L    L+    N+    +  
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLPPQ-ITV 84

Query: 59  LITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIP 118
           L  +   L +L           P                     L  L          +P
Sbjct: 85  LEITQNALISL-----------PELPA----------------SLEYLDACDNRLS-TLP 116

Query: 119 LEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE 178
                    L +L++  N+    +P        L++++  +NQLT  +P+       +LE
Sbjct: 117 ELPA----SLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPT----SLE 163

Query: 179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238
            L                           +  N+L   +P     L     L++S N L 
Sbjct: 164 VL--------------------------SVRNNQL-TFLPELPESLEA---LDVSTNLLE 193

Query: 239 GV-------------IPSLDVSYNNLNGKIPPQLVELNAL 265
            +                     N +   IP  ++ L+  
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 45/267 (16%), Positives = 75/267 (28%), Gaps = 48/267 (17%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
             +L+ L +  N L   LP   E    L+ ++   NQLT       L  L TS+E LS +
Sbjct: 119 PASLKHLDVDNNQLT-MLP---ELPALLEYINADNNQLTM------LPELPTSLEVLS-V 167

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYF---P 126
               L  +   P S                   L  L VS    + ++P           
Sbjct: 168 RNNQLTFLPELPES-------------------LEALDVSTNLLE-SLPAVPVRNHHSEE 207

Query: 127 RLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMF 186
             ++     N     IP +I  L+    + L  N L+  I + L     + +        
Sbjct: 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL-----SQQTAQPDYHG 261

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDV 246
                S S   +        D             + ++          N  +  +  L  
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD 321

Query: 247 SYNNLNGK--------IPPQLVELNAL 265
           + +  N             +L     L
Sbjct: 322 TVSARNTSGFREQVAAWLEKLSASAEL 348

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 53/236 (22%), Positives = 80/236 (33%), Gaps = 59/236 (25%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
            L +L+ L +G N +R         + SL  L+L+ N LT  I S        + EYLS 
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSG-------AFEYLSK 148

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHW-----HLATLYVSKKFFQGNIPLEIGV 123
           L  L L +     N              I S+       L  L + +      I      
Sbjct: 149 LRELWLRN-----NPIES----------IPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES 183
               L YLNL        +P+ +  L  L+ L++S N    EI      G  +L+ L   
Sbjct: 194 GLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKL--- 247

Query: 184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ-IGKLTRVRALNLSHNNLT 238
                                   +  +++   I       L  +  LNL+HNNL+
Sbjct: 248 -----------------------WVMNSQVS-LIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 43/173 (24%)

Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176
           +P  I        YLNL  N        +   L+ L+ L L  N +  +I      G  +
Sbjct: 69  VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 177 LEYL---------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTR 226
           L  L         + S  F             L+K+  + L  N +   IP     ++  
Sbjct: 125 LNTLELFDNWLTVIPSGAFE-----------YLSKLRELWLRNNPIE-SIPSYAFNRVPS 172

Query: 227 VRALNLSHNNLTGVIP-----------SLDVSYNNLNGKIP-----PQLVELN 263
           +  L+L        I             L++   N+   +P       L EL 
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELE 224

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 43/173 (24%), Positives = 63/173 (36%), Gaps = 25/173 (14%)

Query: 5   SGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLY-LNQLTRNISSSPLLHLITS 62
           SG F  L  L+EL +  N +     +    + SL  LDL  L +L   IS      L  +
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-ISEGAFEGL-FN 197

Query: 63  IEYLSTLNYLVLVSMLHF---PNSFTITMSWRPFRMPIQSHW-----HLATLYVSKKFFQ 114
           ++YL+ L    +  M +         + MS   F   I+         L  L+V      
Sbjct: 198 LKYLN-LGMCNIKDMPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVM----- 250

Query: 115 GN----IPLEIGVYFPRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQL 162
            +    I          L+ LNL+ N    S+P  +   L  L  L L HN  
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 44/235 (18%), Positives = 73/235 (31%), Gaps = 35/235 (14%)

Query: 8   FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS 67
            RL ++    M    L           TS+  LDL  N    +++      +  +     
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 68  TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPR 127
            L+    +       +F    ++    +       + T  +SK      +   +  +F  
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG---VKTCDLSKSKIF-ALLKSVFSHFTD 300

Query: 128 LMYLNLSRNEFDGSIPSSIGD-LNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMF 186
           L  L L++NE +  I  +    L  L  L+LS N L   I   +      LE L      
Sbjct: 301 LEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVL------ 352

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGV 240
                               DLS N +   +  Q    L  ++ L L  N L  V
Sbjct: 353 --------------------DLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 46/281 (16%), Positives = 83/281 (29%), Gaps = 51/281 (18%)

Query: 5   SGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI 63
           +  FR L +L  L +  N            + +L+VL L    L   + S      +TS+
Sbjct: 72  NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131

Query: 64  EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSK---------KFFQ 114
           E L  L    +  +   P SF + M                 L ++              
Sbjct: 132 EMLV-LRDNNIKKIQ--PASFFLNMR------------RFHVLDLTFNKVKSICEEDLLN 176

Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
                   +    +   +++          +     S+  LDLS N     + K      
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 175 FNLEYLVESLMFTTKETSY------------SYKGKPLNKMYGIDLSCNKLVGEIPPQI- 221
              +     L  +    S             ++KG   + +   DLS +K+   +   + 
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVF 295

Query: 222 GKLTRVRALNLSHNNLTGVIPS-----------LDVSYNNL 251
              T +  L L+ N +   I             L++S N L
Sbjct: 296 SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 55/308 (17%), Positives = 94/308 (30%), Gaps = 61/308 (19%)

Query: 1   MNSISGL-----FRLRNLQELHMGANDLRGTLPW-CLENITSLKVLDLYLNQLTRNISSS 54
           +NSI+ L      RL++LQ L +        +       ++SL +L L  NQ    + + 
Sbjct: 39  LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETG 97

Query: 55  PLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114
               L  ++E L TL    L   +   N F    S             L  L +     +
Sbjct: 98  AFNGL-ANLEVL-TLTQCNLDGAVLSGNFFKPLTS-------------LEMLVLRDNNIK 142

Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGD---LNSLKFLDLSHNQLT-------G 164
              P    +   R   L+L+ N+   SI               L LS   L        G
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 165 EIPKHLAIGCFNLEYL-VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIG- 222
                      ++  L +    F        +      K+  + LS +  +G        
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 223 -----------KLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPP---- 257
                      + + V+  +LS + +  ++            L ++ N +N KI      
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFW 320

Query: 258 QLVELNAL 265
            L  L  L
Sbjct: 321 GLTHLLKL 328

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 22/128 (17%)

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL----- 180
             + Y++LS N       +S   L  L+FL +        I  +   G  +L  L     
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 181 ----VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKL-VGEIPPQI-GKLTRVRALNLSH 234
               +E+  F             L  +  + L+   L    +       LT +  L L  
Sbjct: 90  QFLQLETGAF-----------NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 235 NNLTGVIP 242
           NN+  + P
Sbjct: 139 NNIKKIQP 146

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 50/232 (21%), Positives = 84/232 (36%), Gaps = 51/232 (21%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLS- 67
            LR+L+ L +  N +R         + +L  L+L+ N+LT  I +   ++L + ++ L  
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYL-SKLKELWL 143

Query: 68  TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPR 127
             N +  +       +F         R+P      L  L + +      I          
Sbjct: 144 RNNPIESIP----SYAFN--------RIP-----SLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFT 187
           L YLNL+       IP ++  L  L  LDLS N L+  I      G  +L+ L       
Sbjct: 187 LRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL------- 236

Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ-IGKLTRVRALNLSHNNLT 238
                               +  +++   I       L  +  +NL+HNNLT
Sbjct: 237 -------------------WMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 43/173 (24%)

Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176
           +P  I         LNL  N+      +S   L  L+ L LS N +   I      G  N
Sbjct: 58  VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113

Query: 177 LEYL---------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTR 226
           L  L         + +  F             L+K+  + L  N +   IP     ++  
Sbjct: 114 LNTLELFDNRLTTIPNGAFV-----------YLSKLKELWLRNNPIE-SIPSYAFNRIPS 161

Query: 227 VRALNLSHNNLTGVIP-----------SLDVSYNNLNGKIP-----PQLVELN 263
           +R L+L        I             L+++  NL  +IP      +L EL+
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELD 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 51/254 (20%), Positives = 85/254 (33%), Gaps = 63/254 (24%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLN 70
            N + L++  N ++       +++  L++L L  N +   I       L       + LN
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGL-------ANLN 115

Query: 71  YLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMY 130
            L L       N  T                      +    F             +L  
Sbjct: 116 TLELFD-----NRLT---------------------TIPNGAFVY---------LSKLKE 140

Query: 131 LNLSRNEFDGSIPSSI-GDLNSLKFLDLSH-NQLTGEIPKHLAIGCFNLEYLVESLMFTT 188
           L L  N  + SIPS     + SL+ LDL    +L+  I +    G  NL YL    +   
Sbjct: 141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLN---LAMC 195

Query: 189 KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIP----- 242
                     PL K+  +DLS N L   I P     L  ++ L +  + +  +       
Sbjct: 196 NLREIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 243 -----SLDVSYNNL 251
                 +++++NNL
Sbjct: 254 LQSLVEINLAHNNL 267

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 38/244 (15%), Positives = 75/244 (30%), Gaps = 44/244 (18%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLT-RNISSSPLLHLITSI 63
             + +   LQEL +  N++          +  + V++L  N L    I +     +   +
Sbjct: 117 EKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKL 173

Query: 64  EYLS-TLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
            Y+      +  +     P+                    L  L++        +     
Sbjct: 174 SYIRIADTNITTIPQGLPPS--------------------LTELHLDGNKIT-KVDAASL 212

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL-- 180
                L  L LS N        S+ +   L+ L L++N+L  ++P  LA     ++ +  
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYL 270

Query: 181 -------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKL-VGEIPPQI-GKLTRVRALN 231
                  + S  F     +            G+ L  N +   EI P     +    A+ 
Sbjct: 271 HNNNISAIGSNDFCPPGYNTK-----KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 232 LSHN 235
           L + 
Sbjct: 326 LGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 47/277 (16%), Positives = 87/277 (31%), Gaps = 73/277 (26%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSP----LLHL----I 60
            L+NL  L +  N +    P     +  L+ L L  NQL       P     L +    I
Sbjct: 74  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133

Query: 61  TSI-----EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
           T +       L+ +  + L                            L +  +    FQG
Sbjct: 134 TKVRKSVFNGLNQMIVVEL------------------------GTNPLKSSGIENGAFQG 169

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF 175
                      +L Y+ ++      +IP  +    SL  L L  N++T ++      G  
Sbjct: 170 ---------MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLN 216

Query: 176 NLEYL---------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR 226
           NL  L         V++                   +  + L+ NKLV ++P  +     
Sbjct: 217 NLAKLGLSFNSISAVDNGSLAN-----------TPHLRELHLNNNKLV-KVPGGLADHKY 264

Query: 227 VRALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELN 263
           ++ + L +NN++ +  +          K       ++
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKK--ASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 42/165 (25%)

Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176
           +P ++    P    L+L  N+          +L +L  L L +N+++ +I          
Sbjct: 46  VPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVK 101

Query: 177 LEYL---------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTR 226
           LE L         +   M  T +               + +  N++  ++   +   L +
Sbjct: 102 LERLYLSKNQLKELPEKMPKTLQE--------------LRVHENEIT-KVRKSVFNGLNQ 146

Query: 227 VRALNLSHNNLTGV-IPS-----------LDVSYNNLNGKIPPQL 259
           +  + L  N L    I +           + ++  N+   IP  L
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 45/246 (18%), Positives = 75/246 (30%), Gaps = 56/246 (22%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSP----LLHL----I 60
            L++L  L +  N +          +  L+ L +  N L     + P     L +    I
Sbjct: 76  GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRI 135

Query: 61  TSI-----EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
             +       L  +N + +       N    +     F         L  L +S+     
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGG-----NPLENS----GFEPGAFDGLKLNYLRISEAKLT- 185

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPS-SIGDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
            IP ++      L  L+L  N+   +I    +   + L  L L HNQ+   I        
Sbjct: 186 GIPKDL---PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFL 240

Query: 175 FNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH 234
             L  L                           L  NKL   +P  +  L  ++ + L  
Sbjct: 241 PTLREL--------------------------HLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 235 NNLTGV 240
           NN+T V
Sbjct: 274 NNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 45/243 (18%), Positives = 77/243 (31%), Gaps = 43/243 (17%)

Query: 5   SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRN-ISSSPLLHLITSI 63
             L    +L EL +  N +R         + ++  +++  N L  +         L    
Sbjct: 119 PNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---- 172

Query: 64  EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV 123
                LNYL +          T         +P      L  L++     Q  I LE  +
Sbjct: 173 ----KLNYLRISE-----AKLT--------GIPKDLPETLNELHLDHNKIQ-AIELEDLL 214

Query: 124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL--- 180
            + +L  L L  N+       S+  L +L+ L L +N+L+  +P  L      L+ +   
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLH 272

Query: 181 ------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKL-VGEIPPQI-GKLTRVRALNL 232
                 V    F                  GI L  N +   E+ P     +T   A+  
Sbjct: 273 TNNITKVGVNDFCPVGFGVK-----RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 233 SHN 235
            + 
Sbjct: 328 GNY 330

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 7e-09
 Identities = 37/261 (14%), Positives = 77/261 (29%), Gaps = 33/261 (12%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR--NISSSP-LLH 58
             I          + ++    +   +      + S+  +    + +     I   P +  
Sbjct: 12  KQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTK 69

Query: 59  L------ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF 112
           L      +T I+ L+ L  L     L    +    +S       ++    L +L +    
Sbjct: 70  LFLNGNKLTDIKPLTNLKNLG---WLFLDENKIKDLS------SLKDLKKLKSLSLEHNG 120

Query: 113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI 172
                 L    + P+L  L L  N+   +  + +  L  L  L L  NQ++ +I      
Sbjct: 121 ISDINGLV---HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV----- 169

Query: 173 GCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNL 232
               L  L    +     +        L  +  ++L   + + +       L     +  
Sbjct: 170 PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 233 SHNNLTGVIP-SLDVSYNNLN 252
           +  +L      S D  Y   N
Sbjct: 229 TDGSLVTPEIISDDGDYEKPN 249

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 23/243 (9%)

Query: 1   MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
              I  L     +    +    L+G L +   + +   +  L ++Q+  ++   P  ++ 
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
                ++  N+ V  + +      +                    L  S      +   E
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISP-------------FLHLDFSNNLLT-DTVFE 342

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIG---DLNSLKFLDLSHNQLTGEIPKHLAIGCFNL 177
              +   L  L L  N+    +         + SL+ LD+S N ++ +  K       +L
Sbjct: 343 NCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 178 EYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNL 237
             L    M +   T  +       ++  +DL  NK+   IP Q+ KL  ++ LN++ N L
Sbjct: 402 LSLN---MSSNILTD-TIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

Query: 238 TGV 240
             V
Sbjct: 457 KSV 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
           ++     L    N L  T+     ++T L+ L L +NQL        L  +      + +
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE------LSKIAEMTTQMKS 375

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
           L  L +       NS +                 L +L +S       I        PR+
Sbjct: 376 LQQLDISQ-----NSVSYDEKKGDCSWTKS----LLSLNMSSNILTDTIF---RCLPPRI 423

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180
             L+L  N+   SIP  +  L +L+ L+++ NQL   +P  +     +L+ +
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKI 473

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 29/255 (11%), Positives = 70/255 (27%), Gaps = 19/255 (7%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST 68
            +  L+ L +    L  +    + ++   KVL +             L    T   ++  
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL 128
                   +L          +     +                     +     +    L
Sbjct: 173 PTNKEFHFILDVSVK-----TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

Query: 129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN-LEYL-VESLMF 186
             +  + N F       +    ++ +  +S+ +L G++           L+ L +  ++ 
Sbjct: 228 NNIETTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS--- 243
                  SY  +  + M   + + +           K++    L+ S+N LT  +     
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 244 -------LDVSYNNL 251
                  L +  N L
Sbjct: 346 HLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 52/272 (19%), Positives = 94/272 (34%), Gaps = 49/272 (18%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
            +    +L NL   ++            L   T++    +   +L   +      +  TS
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 63  IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
           ++ LS     V+  +  FP S+            I S+ ++    VS       + +   
Sbjct: 275 LKALSIHQ--VVSDVFGFPQSYI---------YEIFSNMNIKNFTVSGTRM---VHMLCP 320

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE 182
                 ++L+ S N    ++  + G L  L+ L L  NQL  E+ K              
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSK-------------I 366

Query: 183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVI 241
           + M              +  +  +D+S N +  +           + +LN+S N LT  I
Sbjct: 367 AEMT-----------TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 242 PS--------LDVSYNNLNGKIPPQLVELNAL 265
                     LD+  N +   IP Q+V+L AL
Sbjct: 416 FRCLPPRIKVLDLHSNKIK-SIPKQVVKLEAL 446

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 19/116 (16%)

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV------ES 183
            LN+S+N       S I  L+ L+ L +SHN++   +   +      LEYL         
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK 83

Query: 184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKL-VGEIPPQIGKLTRVRALNLSHNNLT 238
           +              P   +  +DLS N      I  + G +++++ L LS  +L 
Sbjct: 84  ISC-----------HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 51/245 (20%), Positives = 78/245 (31%), Gaps = 78/245 (31%)

Query: 1   MNSIS----GLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSP 55
            N IS      FR  RNL  L + +N L          +  L+ LDL  N   R++  + 
Sbjct: 41  GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA- 99

Query: 56  LLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQG 115
                 +   L  L+ L L                   R  +Q         +    F+G
Sbjct: 100 ------TFHGLGRLHTLHL------------------DRCGLQE--------LGPGLFRG 127

Query: 116 NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
                       L YL L  N    ++P     DL +L  L L  N+++  +P+    G 
Sbjct: 128 ---------LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL 176

Query: 175 FNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLS 233
            +L+ L                           L  N++   + P     L R+  L L 
Sbjct: 177 HSLDRL--------------------------LLHQNRVA-HVHPHAFRDLGRLMTLYLF 209

Query: 234 HNNLT 238
            NNL+
Sbjct: 210 ANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 29/144 (20%), Positives = 41/144 (28%), Gaps = 41/144 (28%)

Query: 126 PRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
             L  L+LS N    S+  +    L  L  L L    L  E+   L  G   L+YL    
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL---- 134

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIP- 242
                                  L  N L   +P      L  +  L L  N ++ V   
Sbjct: 135 ----------------------YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 243 ---------SLDVSYNNLNGKIPP 257
                     L +  N +   + P
Sbjct: 172 AFRGLHSLDRLLLHQNRVA-HVHP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 39/157 (24%)

Query: 117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN 176
           +P+ I         + L  N       +S     +L  L L  N L   I      G   
Sbjct: 26  VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 177 LEYL----------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLT 225
           LE L          V+   F             L +++ + L    L  E+ P +   L 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFH-----------GLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 226 RVRALNLSHNNLTGVIPS-----------LDVSYNNL 251
            ++ L L  N L   +P            L +  N +
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 36/136 (26%)

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLM 185
             L  L +   +       ++  L SL  LD+SH+     I   +      +  +     
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSI----- 141

Query: 186 FTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--- 242
                                DLS N  + +I P +  L  +++LN+  + +        
Sbjct: 142 ---------------------DLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIED 179

Query: 243 -----SLDVSYNNLNG 253
                 L      + G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 25/165 (15%), Positives = 60/165 (36%), Gaps = 26/165 (15%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
             ++G+    N+++L +         P  +  +++L+ L +    +T +         I 
Sbjct: 57  TDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDK--------IP 106

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNI-PLE 120
           ++  L++L  L +       ++   ++        I +   + ++ +S      +I PL+
Sbjct: 107 NLSGLTSLTLLDISH-----SAHDDSIL-----TKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE 165
                P L  LN+  +         I D   L  L      + G+
Sbjct: 157 ---TLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 28/137 (20%)

Query: 145 SIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV--ESLMFT-TKETSYSYKGKPLN 201
           +   +NSL ++ L++  +T ++          +EY    + L       T+Y+     L+
Sbjct: 39  TEAQMNSLTYITLANINVT-DLT--------GIEYAHNIKDLTINNIHATNYNPISG-LS 88

Query: 202 KMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS----------LDVSYNNL 251
            +  + +    +  +  P +  LT +  L++SH+     I +          +D+SYN  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 252 NGKIPP-----QLVELN 263
              I P     +L  LN
Sbjct: 149 ITDIMPLKTLPELKSLN 165

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 40/236 (16%), Positives = 70/236 (29%), Gaps = 42/236 (17%)

Query: 9   RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLY--LNQLTRNISSSPLLHLITSIEYL 66
               L    +        L   LE+   L+ L+       LT  +    L  L+   E L
Sbjct: 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLAT-LYVSKKFFQGNIPLEIGVYF 125
              + L  V  +       +   +      ++  +     L+++ K       LE     
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE---QL 462

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT--GEIPKHLAIGCFNLEYLVES 183
             + +L+LS N    ++P ++  L  L+ L  S N L     +          L+ L   
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVAN-----LPRLQEL--- 513

Query: 184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG-EIPPQIGKLTRVRALNLSHNNLT 238
                                   L  N+L        +    R+  LNL  N+L 
Sbjct: 514 -----------------------LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
            +  L +L  +  L +  N LR  LP  L  +  L+VL    N L            +  
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN----------VDG 503

Query: 63  IEYLSTLNYLVL 74
           +  L  L  L+L
Sbjct: 504 VANLPRLQELLL 515

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 7e-07
 Identities = 49/312 (15%), Positives = 83/312 (26%), Gaps = 91/312 (29%)

Query: 28  PWCLENITSLKVLDLYLNQLTR-----------NISS-SPLLHLITSIEYLSTLNYLVLV 75
           P   E      +  +Y+ Q  R           N+S   P L L  ++  L     +++ 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 76  SMLHFPNSFTITMSWRPFR----MPIQSHW--------------HLATLY--VSKKFFQG 115
            +L    ++        ++    M  +  W               L  L   +   +   
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 116 -----NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL 170
                NI L I      L  L L    ++          N L  L    N    +     
Sbjct: 217 SDHSSNIKLRIHSIQAELRRL-LKSKPYE----------NCLLVLL---NVQNAKAWNAF 262

Query: 171 AIGCFNL-----EYLVESLMF-TTKETSYSYKGKPLNKMYGIDLSCNKL---VGEIPPQ- 220
            + C  L     + + + L   TT   S  +    L       L    L     ++P + 
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 221 ----------IGKLTRV---RALNLSHNNLTGVIPSLDVSYNNL---------------- 251
                     I +  R       N  H N   +   ++ S N L                
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 252 -NGKIPPQLVEL 262
            +  IP  L+ L
Sbjct: 383 PSAHIPTILLSL 394

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 31/128 (24%)

Query: 126 PRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
             L  L LS N  +  I S     + +L++LDLS N L   + + L      LE L    
Sbjct: 64  TNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL---- 117

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIPS 243
                                  L  N +V  +       + +++ L LS N ++     
Sbjct: 118 ----------------------LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 244 LDVSYNNL 251
           L    N L
Sbjct: 155 LIKDGNKL 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 45/239 (18%), Positives = 72/239 (30%), Gaps = 71/239 (29%)

Query: 5   SGLF-RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSI 63
           S  F     LQ L +   +++       ++++ L  L L  N +  +++         + 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLAL-------GAF 96

Query: 64  EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV 123
             LS+L  LV V                     + S  +                     
Sbjct: 97  SGLSSLQKLVAVE-----T-------------NLASLENFP--------IGH-------- 122

Query: 124 YFPRLMYLNLSRNEFDGSIPSS--IGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV 181
               L  LN++ N    S        +L +L+ LDLS N++   I          +  L 
Sbjct: 123 -LKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179

Query: 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240
            SL                      DLS N +   I P   K  R++ L L  N L  V
Sbjct: 180 LSL----------------------DLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSV 215

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 38/243 (15%), Positives = 79/243 (32%), Gaps = 23/243 (9%)

Query: 1   MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
              +   F  R ++ L++    +   +       +   +  L +  +   +       L 
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
           +    ++          L   ++  I M       P         L  ++  F  +   +
Sbjct: 326 SVFAEMNIKM-------LSISDTPFIHMV--CPPSPSS----FTFLNFTQNVFT-DSVFQ 371

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIG---DLNSLKFLDLSHNQLTGEIPKHLAIGCFNL 177
                 RL  L L RN    +         +++SL+ LD+S N L             ++
Sbjct: 372 GCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 178 EYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNL 237
             L    + +   T   ++  P      +DL  N++   IP  +  L  ++ LN++ N L
Sbjct: 431 LVL---NLSSNMLTGSVFRCLPPKVKV-LDLHNNRI-MSIPKDVTHLQALQELNVASNQL 485

Query: 238 TGV 240
             V
Sbjct: 486 KSV 488

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 15/186 (8%)

Query: 5   SGLFR-LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSP-----LLH 58
             L+     +    +  +D       C  + +S   L+   N  T ++         L  
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 59  LITSIEYLSTL----NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114
           LI     L            +S L   +    +++   +         +  L +S     
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGC 174
           G++   +    P++  L+L  N    SIP  +  L +L+ L+++ NQL   +P  +    
Sbjct: 442 GSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL 496

Query: 175 FNLEYL 180
            +L+Y+
Sbjct: 497 TSLQYI 502

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 44/263 (16%), Positives = 85/263 (32%), Gaps = 45/263 (17%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
                   L  +  L      +       ++ + +L  L+L  NQ+T           + 
Sbjct: 32  TDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITD----------LA 79

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI 121
            ++ L+ +  L L       N     +S       I     + TL ++        PL  
Sbjct: 80  PLKNLTKITELELSG-----NPLK-NVS------AIAGLQSIKTLDLTSTQITDVTPLA- 126

Query: 122 GVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV 181
                 L  L L  N+   +  S +  L +L++L + + Q++   P  LA    NL  L 
Sbjct: 127 --GLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LA----NLSKLT 176

Query: 182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT--- 238
                  K +  S     L  +  + L  N++    P  +   + +  + L++  +T   
Sbjct: 177 TLKADDNKISDISPLAS-LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233

Query: 239 ----GVIPSLDVSYNNLNGKIPP 257
                 +   +V        I P
Sbjct: 234 VFYNNNLVVPNVVKGPSGAPIAP 256

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 51/260 (19%), Positives = 91/260 (35%), Gaps = 50/260 (19%)

Query: 1   MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
             S +  F   N       A +++ T     E + +L  LD + + +T           +
Sbjct: 8   TQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD----------M 57

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
           T IE L+ L  L+  S     N+ T         + +  + +L  L         N+ + 
Sbjct: 58  TGIEKLTGLTKLICTS-----NNITT--------LDLSQNTNLTYLACDSNKLT-NLDVT 103

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG-CFNLEY 179
                 +L YLN   N+        +     L +L+ + N LT      + +     L  
Sbjct: 104 ---PLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT-----EIDVSHNTQLTE 152

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
           L   L     +   +    P  ++  +D S NK+  E+   + +   +  LN   NN+T 
Sbjct: 153 LDCHLNKKITKLDVT----PQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITK 205

Query: 240 VIPS-------LDVSYNNLN 252
           +  +       LD S N L 
Sbjct: 206 LDLNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 39/276 (14%), Positives = 83/276 (30%), Gaps = 54/276 (19%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR-NISSSPLLH--- 58
           +   +     L  L    N +   L   +     L  L+   N +T+ +++ +  L    
Sbjct: 162 TKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLD 218

Query: 59  ----LITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ 114
                +T I+ ++ L  L         N  T         + + +   L TL+  +    
Sbjct: 219 CSSNKLTEID-VTPLTQLTYFDCSV--NPLT--------ELDVSTLSKLTTLHCIQTDLL 267

Query: 115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG- 173
             I L    +  +L+Y           +   +     L  LD     +T      L +  
Sbjct: 268 -EIDLT---HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-----ELDLSQ 316

Query: 174 CFNLEYL------VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRV 227
              L YL      +  L  +              K+  +      +  +    +GK+  +
Sbjct: 317 NPKLVYLYLNNTELTELDVS-----------HNTKLKSLSCVNAHIQ-DFSS-VGKIPAL 363

Query: 228 RALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELN 263
                +       +P   ++ N+L   + P L++  
Sbjct: 364 NNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 48/252 (19%), Positives = 83/252 (32%), Gaps = 49/252 (19%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT-------- 61
              L  L+   N L   +   + + T L  LD +LN+    +  +P   L T        
Sbjct: 126 NPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182

Query: 62  ---SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIP 118
               +     LN L   +     N+ T        ++ +  +  L  L  S       I 
Sbjct: 183 TELDVSQNKLLNRLNCDT-----NNIT--------KLDLNQNIQLTFLDCSSNKLT-EID 228

Query: 119 LEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE 178
           +       +L Y + S N     +   +  L+ L  L      L  EI          L 
Sbjct: 229 VT---PLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID---LTHNTQLI 278

Query: 179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT 238
           Y         KE   ++      ++Y +D     +  E+   + +  ++  L L++  LT
Sbjct: 279 YFQAEGCRKIKELDVTH----NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331

Query: 239 GVIPSLDVSYNN 250
                LDVS+N 
Sbjct: 332 ----ELDVSHNT 339

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 45/257 (17%), Positives = 80/257 (31%), Gaps = 40/257 (15%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR-NISSSPLLHLITSIEYLST 68
           L  L  L+   N L   L   +     L  L+   N LT  ++S +  L  +        
Sbjct: 105 LTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTEL----DCHL 157

Query: 69  LNYLVLVSMLHFPNSFTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPR 127
              +  + +       T+  S+     + +  +  L  L          + L       +
Sbjct: 158 NKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNIT-KLDLN---QNIQ 213

Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL-VESLMF 186
           L +L+ S N+    I   +  L  L + D S N LT E+          L  L       
Sbjct: 214 LTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDL 266

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDV 246
              + ++        ++  I              +   T++  L+     +T     LD+
Sbjct: 267 LEIDLTH------NTQL--IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT----ELDL 314

Query: 247 SYNNLNGKIPPQLVELN 263
           S N       P+LV L 
Sbjct: 315 SQN-------PKLVYLY 324

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 39/239 (16%), Positives = 83/239 (34%), Gaps = 29/239 (12%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIE-YLSTL 69
           RN  EL      LR            L+ +++  N +   I +    +L    E  +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
           N L+ ++    P +F    +             L  L +S    + ++P    ++  + +
Sbjct: 90  NNLLYIN----PEAFQNLPN-------------LQYLLISNTGIK-HLPDVHKIHSLQKV 131

Query: 130 YLNLSRNEFDGSIPSSI--GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFT 187
            L++  N    +I  +   G       L L+ N +  EI      G    E  +      
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL 190

Query: 188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGVIPSLD 245
            +  +  + G   +    +D+S  ++   +P      L ++RA +  +      +P+L+
Sbjct: 191 EELPNDVFHG--ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPTLE 243

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 24/125 (19%)

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV---- 181
           P L  L+LS N+   S+P     L +L  LD+S N+LT  +P     G   L+ L     
Sbjct: 77  PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134

Query: 182 --ESL---MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHN 235
             ++L   + T           P  K+  + L+ N L  E+P  +   L  +  L L  N
Sbjct: 135 ELKTLPPGLLT-----------PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

Query: 236 NLTGV 240
           +L  +
Sbjct: 183 SLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 33/162 (20%), Positives = 54/162 (33%), Gaps = 46/162 (28%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
            +     L  L  L +  N L+ +LP   + + +L VLD+  N+LT ++    L      
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG---- 122

Query: 63  IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
              L  L  L L       N                                  +P  + 
Sbjct: 123 ---LGELQELYLKG-----NELK------------------------------TLPPGLL 144

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGD-LNSLKFLDLSHNQLT 163
              P+L  L+L+ N     +P+ + + L +L  L L  N L 
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 35/261 (13%), Positives = 76/261 (29%), Gaps = 33/261 (12%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL-- 59
             I          + ++    +   +      + S+  +    + +        L ++  
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTK 72

Query: 60  -------ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF 112
                  +T I+ L+ L  L     L    +    +S       ++    L +L +    
Sbjct: 73  LFLNGNKLTDIKPLANLKNLG---WLFLDENKVKDLS------SLKDLKKLKSLSLEHNG 123

Query: 113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI 172
                 L    + P+L  L L  N+   +  + +  L  L  L L  NQ++ +I      
Sbjct: 124 ISDINGLV---HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV----- 172

Query: 173 GCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNL 232
               L  L    +     +        L  +  ++L   + + +       L     +  
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRALAG-LKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 233 SHNNLTGVIP-SLDVSYNNLN 252
           +  +L      S D  Y   N
Sbjct: 232 TDGSLVTPEIISDDGDYEKPN 252

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 31/117 (26%)

Query: 126 PRLMYLNLSRNEFDGSIPSSIGD-LNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
           P+L  +N S N+    I     +  + +  + L+ N+L   +   +  G  +L+ L    
Sbjct: 57  PQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTL---- 110

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGV 240
                                  L  N++   +       L+ VR L+L  N +T V
Sbjct: 111 ----------------------MLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTV 144

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 26/171 (15%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL-- 59
           N +     L N  + ++G   +   +    + ++ ++  +   + +          +L  
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTNLKE 67

Query: 60  -------ITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF 112
                  I+ +  L  L  L  +S+    N            +       L+ L++    
Sbjct: 68  LHLSHNQISDLSPLKDLTKLEELSVNR--NRLK--------NLNGIPSACLSRLFLDNNE 117

Query: 113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT 163
            +    L    +   L  L++  N+   SI   +G L+ L+ LDL  N++T
Sbjct: 118 LRDTDSLI---HLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT 163

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 19/165 (11%), Positives = 48/165 (29%), Gaps = 38/165 (23%)

Query: 88  MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV-YFPRLMYLNLSRNEFDGSIPSSI 146
                  +  +   +L +L +       ++  +I     P L  L L     D      +
Sbjct: 180 KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239

Query: 147 GDLN---------SLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKG 197
                        +LK+L +   +    + +                           + 
Sbjct: 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL------------------------ES 275

Query: 198 KPLNKMYGIDLSCNKL----VGEIPPQIGKLTRVRALNLSHNNLT 238
             L ++  +D+S   L       +   + K+  ++ +N+ +N L+
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 126 PRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171
           P+L  +++S           +   +  +  LKF+++ +N L+ E+ K L 
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 24/185 (12%), Positives = 56/185 (30%), Gaps = 23/185 (12%)

Query: 11  RNLQELHMGANDLRGTLPWCLENIT------------SLKVLDLYLNQLTRNISSSPLLH 58
           + L+ L +        +      ++             L+ + +Y++ +T    +  L  
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT----NESLES 397

Query: 59  LITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ-GNI 117
           + T ++ L     ++L          T        R  +     L       +     ++
Sbjct: 398 IGTYLKNLCDFRLVLLDR----EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453

Query: 118 PLE-IGVYFPRLMYLNLSRNEF-DGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCF 175
            L  IG Y P + ++ L      D  +        +L+ L++     +            
Sbjct: 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513

Query: 176 NLEYL 180
           +L YL
Sbjct: 514 SLRYL 518

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 31/117 (26%)

Query: 126 PRLMYLNLSRNEFDGSIPSSIGD-LNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
            +L  ++LS N+    +       L SL  L L  N++T E+PK L  G F+L+ L    
Sbjct: 56  KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL---- 109

Query: 185 MFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI-GKLTRVRALNLSHNNLTGV 240
                                  L+ NK+   +       L  +  L+L  N L  +
Sbjct: 110 ----------------------LLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTI 143

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 125 FPRLMYLNLSRNEFDGSIPSSI-GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES 183
            P +  + +S +     + S    +L+ +  +++ + +    I          L++L   
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL--G 111

Query: 184 LMFTT-KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQI--GKLTRVRALNLSHNNLTGV 240
           +  T  K      K    +  + ++++ N  +  IP     G       L L +N  T V
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171

Query: 241 ---------IPSLDVSYNNLNGKIPP 257
                    + ++ ++ N     I  
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDK 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 52/212 (24%), Positives = 79/212 (37%), Gaps = 58/212 (27%)

Query: 35  TSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFR 94
              K LDL  N+L+ ++ S     L T +  L  LN   L ++      F    +     
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRL-TKLRLLY-LNDNKLQTLP--AGIFKELKN----- 86

Query: 95  MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGD-LNSLK 153
                   L TL+V+    Q  +P+ +      L  L L RN+   S+P  + D L  L 
Sbjct: 87  --------LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLT 136

Query: 154 FLDLSHNQLTGEIPKHLAIGCF----NLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLS 209
           +L L +N+L   +PK    G F    +L+ L                           L 
Sbjct: 137 YLSLGYNELQ-SLPK----GVFDKLTSLKEL--------------------------RLY 165

Query: 210 CNKLVGEIPPQI-GKLTRVRALNLSHNNLTGV 240
            N+L   +P     KLT ++ L L +N L  V
Sbjct: 166 NNQL-KRVPEGAFDKLTELKTLKLDNNQLKRV 196

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 43/295 (14%), Positives = 81/295 (27%), Gaps = 78/295 (26%)

Query: 4   ISGLFRLRNLQELHMGANDL--RGT--LPWCLENITSLKVLDLYLNQLTRNISSSP--LL 57
            + L    +++E+ +  N +       L   + +   L++ +       R     P  L 
Sbjct: 25  FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84

Query: 58  HLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSK------- 110
            L+ ++     L+ + L       N+F    +  P    +  H  L  LY+         
Sbjct: 85  LLLQALLKCPKLHTVRLSD-----NAFG-PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138

Query: 111 -----KFFQGNIPLEIGVYFPRLMYLNLSRNEFDG----SIPSSIGDLNSLKFLDLSHNQ 161
                +  Q     +     P L  +   RN  +         +      L  + +  N 
Sbjct: 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 162 LTGE-IPKHLAIG---CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKL---- 213
           +  E I   L  G   C  L+ L                          DL  N      
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVL--------------------------DLQDNTFTHLG 232

Query: 214 VGEIPPQIGKLTRVRALNLSHNNLT--GVIP--------------SLDVSYNNLN 252
              +   +     +R L L+   L+  G                 +L + YN + 
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.32

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1.1e-28  Score=228.64  Aligned_cols=253  Identities=30%  Similarity=0.391  Sum_probs=182.4

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcce
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSFT   85 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~~   85 (266)
                      +++|++|++++|.+.+..|..|.++++|++|++++|.+++.+|. .+..+ ++|+.|++++|..    +..+..++.+..
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence            67788888888888878888888888888888888888877777 77777 8888888888872    333445555544


Q ss_pred             ecccCc----ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681           86 ITMSWR----PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ  161 (266)
Q Consensus        86 ~~~~~~----~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  161 (266)
                      .+.+.+    .+|..+..+++|++|++++|++++.+|..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            443332    46777888999999999999998888887776 8899999999999988889999999999999999999


Q ss_pred             eeecCCccccccccchhHHHhhh--------------------------------------cc------cccccccCCCC
Q 048681          162 LTGEIPKHLAIGCFNLEYLVESL--------------------------------------MF------TTKETSYSYKG  197 (266)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~l~~~~--------------------------------------~~------~~~~~~~~~~~  197 (266)
                      +.+.+|..++.... ...+....                                      ..      ..-....+...
T Consensus       550 l~g~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          550 FNGTIPAAMFKQSG-KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EESBCCGGGGTTTT-CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             cCCcCChHHhcccc-hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            98888876643111 00000000                                      00      00000111223


Q ss_pred             cCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccCC
Q 048681          198 KPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       198 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      ..++.|+.||+++|.+++.+|..++.+++|+.|++++|.++|.+|          .||+++|.++|.+|+++.++++|+
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            345677778888877777777777777777778887777777666          677777777777777777777653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2.9e-28  Score=203.07  Aligned_cols=223  Identities=27%  Similarity=0.385  Sum_probs=109.3

Q ss_pred             CCCcEEECCCccCcc--CCChhhhcCCCCcEEeccC-CcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681           11 RNLQELHMGANDLRG--TLPWCLENITSLKVLDLYL-NQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT   87 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~   87 (266)
                      .+++.|++++|.+.+  .+|..|.++++|++|++++ |.+++.+|. .+..+ ++|++|++++|....            
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l-~~L~~L~Ls~n~l~~------------  115 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKL-TQLHYLYITHTNVSG------------  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGC-TTCSEEEEEEECCEE------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcC-CCCCEEECcCCeeCC------------
Confidence            466777777777766  5667777777777777773 666666666 66666 777777777665310            


Q ss_pred             ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCC-CCCEEEccCCeeeecC
Q 048681           88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLN-SLKFLDLSHNQLTGEI  166 (266)
Q Consensus        88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~  166 (266)
                          .+|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..++ +|+.|++++|++++.+
T Consensus       116 ----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~  190 (313)
T 1ogq_A          116 ----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             ----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred             ----cCCHHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence                12333344444444444444444334433333 44444444444444434444444443 4444444444444333


Q ss_pred             CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----
Q 048681          167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----  242 (266)
Q Consensus       167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----  242 (266)
                      |..+. .+. ++.+++..+.......  .....++.|+.|++++|.+++.++. +..+++|++|++++|.+++.+|    
T Consensus       191 ~~~~~-~l~-L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~  265 (313)
T 1ogq_A          191 PPTFA-NLN-LAFVDLSRNMLEGDAS--VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             CGGGG-GCC-CSEEECCSSEEEECCG--GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ChHHh-CCc-ccEEECcCCcccCcCC--HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence            33331 111 3333333332222111  1112244555555555555433322 4444555555555555554333    


Q ss_pred             ------eEEeeCCeeeecCCh
Q 048681          243 ------SLDVSYNNLNGKIPP  257 (266)
Q Consensus       243 ------~l~l~~n~i~~~~p~  257 (266)
                            .|++++|.++|.+|+
T Consensus       266 ~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          266 QLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCC
T ss_pred             cCcCCCEEECcCCcccccCCC
Confidence                  455555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1.7e-27  Score=220.51  Aligned_cols=250  Identities=28%  Similarity=0.375  Sum_probs=193.7

Q ss_pred             CCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhcc
Q 048681            3 SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSML   78 (266)
Q Consensus         3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~   78 (266)
                      .|+.|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++.+|. .+..+ ++|++|++++|..    +..+.
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l-~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYV-KTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGC-TTCCEEECCSSCCCSCCCGGGG
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH-HHcCC-CCceEEEecCCcccCcCCHHHh
Confidence            356788999999999999999999999999999999999999999988888 78887 9999999999983    34455


Q ss_pred             CCCCcceecccCc----ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCE
Q 048681           79 HFPNSFTITMSWR----PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKF  154 (266)
Q Consensus        79 ~~~~~~~~~~~~~----~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  154 (266)
                      .++++...+.+.+    .+|.++..+++|++|++++|.+++.+|..+.. +++|+.|++++|.+.+.+|..+.....+..
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~  566 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIA  566 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEECCCCccCCcCChHHhcccchhh
Confidence            5666655444332    56788999999999999999999899988877 899999999999998777766544322221


Q ss_pred             ----------------------------------------------EEccCCeeeecCCccccccccchhHHHhhhcccc
Q 048681          155 ----------------------------------------------LDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTT  188 (266)
Q Consensus       155 ----------------------------------------------L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~  188 (266)
                                                                    ++++.+.+.+.+|..+ ..+.+++.++++.+...
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~-~~l~~L~~LdLs~N~l~  645 (768)
T 3rgz_A          567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLS  645 (768)
T ss_dssp             CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC-SSSBCCCEEECCSSCCB
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh-hccccccEEECcCCccc
Confidence                                                          1222233443333333 34455555555554433


Q ss_pred             cccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChh
Q 048681          189 KETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQ  258 (266)
Q Consensus       189 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~  258 (266)
                      ...  +.....++.|+.|+|++|.+++.+|..++.+++|+.|++++|+++|.+|          .|++++|+++|.+|+.
T Consensus       646 g~i--p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          646 GYI--PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             SCC--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             ccC--CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            222  2223357899999999999999999999999999999999999998887          8999999999999974

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=3.8e-27  Score=196.32  Aligned_cols=210  Identities=25%  Similarity=0.329  Sum_probs=178.2

Q ss_pred             CCCcEEeccCCcccc--cCCCCcchhhccccccccccc-chhhhhccCCCCcceecccCcccccCcccccCccEEEccCc
Q 048681           35 TSLKVLDLYLNQLTR--NISSSPLLHLITSIEYLSTLN-YLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKK  111 (266)
Q Consensus        35 ~~L~~L~l~~n~i~~--~~~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n  111 (266)
                      .+++.|++++|.+++  .+|. .+..+ +.|++|++++ |...                ..+|..+..+++|++|++++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l-~~L~~L~L~~~n~l~----------------~~~p~~l~~l~~L~~L~Ls~n  111 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS-SLANL-PYLNFLYIGGINNLV----------------GPIPPAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG-GGGGC-TTCSEEEEEEETTEE----------------SCCCGGGGGCTTCSEEEEEEE
T ss_pred             ceEEEEECCCCCccCCcccCh-hHhCC-CCCCeeeCCCCCccc----------------ccCChhHhcCCCCCEEECcCC
Confidence            689999999999998  7888 88888 9999999995 5421                245677889999999999999


Q ss_pred             cccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhccccccc
Q 048681          112 FFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET  191 (266)
Q Consensus       112 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  191 (266)
                      .+++.+|..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.....+++.+++..+......
T Consensus       112 ~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~  190 (313)
T 1ogq_A          112 NVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             CCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred             eeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence            999888887776 8999999999999988899999999999999999999998888777533338888888877665333


Q ss_pred             ccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC---------eEEeeCCeeeecCChhhhhc
Q 048681          192 SYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---------SLDVSYNNLNGKIPPQLVEL  262 (266)
Q Consensus       192 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~l~l~~n~i~~~~p~~~~~~  262 (266)
                      ...+  ..++ |+.|++++|.+++..|..+..+++|+.|++++|.+++.+|         +|++++|.+.+.+|..+.++
T Consensus       191 ~~~~--~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  267 (313)
T 1ogq_A          191 PPTF--ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             CGGG--GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             ChHH--hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcC
Confidence            3222  2244 9999999999998888899999999999999999986644         89999999999999999998


Q ss_pred             ccCC
Q 048681          263 NALA  266 (266)
Q Consensus       263 ~~l~  266 (266)
                      ++|+
T Consensus       268 ~~L~  271 (313)
T 1ogq_A          268 KFLH  271 (313)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            8774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6e-27  Score=196.28  Aligned_cols=208  Identities=19%  Similarity=0.238  Sum_probs=170.0

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM   88 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~   88 (266)
                      ..++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|. .+..+ ++|++|++++|..               
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~~~l-~~L~~L~Ls~n~l---------------  139 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TMQQF-AGLETLTLARNPL---------------  139 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCS-CGGGG-TTCSEEEEESCCC---------------
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhH-HHhcc-CCCCEEECCCCcc---------------
Confidence            3588999999999999 77888999999999999999998 7887 88888 9999999999874               


Q ss_pred             cCcccccCcccccCccEEEccCccccccCCccccc--------cCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           89 SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV--------YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                        ..+|..+..+++|++|++++|.+.+.+|..+..        .+++|++|++++|.++ .+|..+..+++|+.|++++|
T Consensus       140 --~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          140 --RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS  216 (328)
T ss_dssp             --CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred             --ccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence              356777888999999999998888788876642        3789999999999998 78888999999999999999


Q ss_pred             eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      +++ .+|..+.                           .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.
T Consensus       217 ~l~-~l~~~l~---------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          217 PLS-ALGPAIH---------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             CCC-CCCGGGG---------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred             CCC-cCchhhc---------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence            998 4555432                           256777777777777767777777777777777777777666


Q ss_pred             CC----------eEEeeCCeeeecCChhhhhcccCC
Q 048681          241 IP----------SLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       241 ~~----------~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      +|          .|++++|.+.+.+|+.++++++|+
T Consensus       269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            55          678888887788888888887663

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=5.6e-26  Score=198.32  Aligned_cols=66  Identities=21%  Similarity=0.206  Sum_probs=32.1

Q ss_pred             ccccCCCCCcEEECCCccCcc-CCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681            5 SGLFRLRNLQELHMGANDLRG-TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      +.|.++++|++|++++|.+.+ ..+..|.++++|++|++++|.+++..|. .+..+ ++|++|++++|.
T Consensus        48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l-~~L~~L~L~~n~  114 (455)
T 3v47_A           48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGL-ANLEVLTLTQCN  114 (455)
T ss_dssp             TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTC-TTCCEEECTTSC
T ss_pred             hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCc-ccCCEEeCCCCC
Confidence            344455555555555554432 2234455555555555555555444344 44444 555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.8e-26  Score=201.53  Aligned_cols=255  Identities=20%  Similarity=0.179  Sum_probs=131.2

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCC
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHF   80 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~   80 (266)
                      +.|.++++|++|++++|.+.+..|.+|.++++|++|++++|.++. ++...|..+ ++|++|++++|.+    ...+..+
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l  127 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGL-SNLTKLDISENKIVILLDYMFQDL  127 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-cCcccccCC-CCCCEEECCCCccccCChhHcccc
Confidence            455666666666666666666666666666666666666666653 333144444 6666666666652    1122333


Q ss_pred             CCcceecccCccc----ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEE
Q 048681           81 PNSFTITMSWRPF----RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLD  156 (266)
Q Consensus        81 ~~~~~~~~~~~~l----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  156 (266)
                      +++.....+.+.+    +..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus       128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred             ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence            3333322222221    234555556666666666555 33333333355566666665555544444555555555555


Q ss_pred             ccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccc
Q 048681          157 LSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN  236 (266)
Q Consensus       157 l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  236 (266)
                      +++|...+.++...+. ..+++.+++..+........  ....++.|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus       207 l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYL--AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ  283 (477)
T ss_dssp             EECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHH--HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred             CCCCccccccCccccc-CccccEEECcCCcccccCHH--HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence            5554433333333221 12344444443332222111  11235566666666666664444556666666666666666


Q ss_pred             ccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681          237 LTGVIP----------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       237 l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      +++..|          .|++++|.+++..+..|.++++|
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  322 (477)
T 2id5_A          284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL  322 (477)
T ss_dssp             CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred             cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence            665433          56666666664444445555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=5.1e-26  Score=205.41  Aligned_cols=256  Identities=22%  Similarity=0.185  Sum_probs=181.6

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh----h-hccCC
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL----V-SMLHF   80 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~----~-~~~~~   80 (266)
                      .|.++++|++|++++|.++ .+|..+..+++|++|++++|.+++..+. .+..+ ++|++|++++|...    . .+..+
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI-SASNF-PSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG-CGGGC-TTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh-hhhcc-CcCCEEECCCCCcccccchhhhhcc
Confidence            3677788888888888877 5677777788888888888887765555 66666 78888888877622    1 13444


Q ss_pred             CCcceecccCccc------ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCc-cccCCCCCC
Q 048681           81 PNSFTITMSWRPF------RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPS-SIGDLNSLK  153 (266)
Q Consensus        81 ~~~~~~~~~~~~l------~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~  153 (266)
                      +++...+.+.+.+      +..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+....+. .+..+++|+
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-CTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-CccCCeEECCCCcCCCcccchhhhCcccCC
Confidence            5554444433332      455777788888888888887554544444 77888888888888655443 477888888


Q ss_pred             EEEccCCeeeecCCccccccccchhHHHhhhccccccc-ccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeec
Q 048681          154 FLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET-SYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNL  232 (266)
Q Consensus       154 ~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  232 (266)
                      .|++++|++.+.. ...+..+.+++.+++..+...... ........+++|+.|++++|.+++..|..+..+++|++|++
T Consensus       429 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          429 VLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             EEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence            8888888887433 344466778888888777654422 22233445788999999999888777788888899999999


Q ss_pred             ccccccccCC---------eEEeeCCeeeecCChhhhhcccCC
Q 048681          233 SHNNLTGVIP---------SLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       233 ~~n~l~~~~~---------~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      ++|++++.+|         .|++++|.+++..|+.+..+++|+
T Consensus       508 s~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSS
T ss_pred             CCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCC
Confidence            9998887654         788899999877777777776653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.5e-25  Score=195.67  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=31.3

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ++|++|++++|.+.+..|..|.++++|++|++++|.+.+.++...|..+ ++|++|++++|.
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L~Ls~n~   90 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLDYNQ   90 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-TTCCEEECTTCT
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc-ccCCEEeCCCCc
Confidence            4455555555555544455555555555555555555433332234444 555555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=1.5e-25  Score=202.43  Aligned_cols=165  Identities=19%  Similarity=0.144  Sum_probs=91.6

Q ss_pred             cccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchh
Q 048681           99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLE  178 (266)
Q Consensus        99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~  178 (266)
                      .+++|++|++++|.++ .+|..+.. +++|++|++++|.+....+..+..+++|+.|++++|.+.+.++...+..+.+++
T Consensus       276 ~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          276 CFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             cccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            3444555555555444 44444333 445555555555554333444445555555555555444344444444555666


Q ss_pred             HHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-----------eEEee
Q 048681          179 YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-----------SLDVS  247 (266)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~l~l~  247 (266)
                      .+++..+........+.....++.|+.|++++|.+.+..|..+..+++|++|++++|++++..+           .|+++
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence            6665555544443333344456777777777777765566666677777777777777664422           66777


Q ss_pred             CCeeeecCChhhhhcccC
Q 048681          248 YNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       248 ~n~i~~~~p~~~~~~~~l  265 (266)
                      +|.+.+..|..+.++++|
T Consensus       434 ~n~l~~~~~~~~~~l~~L  451 (606)
T 3t6q_A          434 HSLLDISSEQLFDGLPAL  451 (606)
T ss_dssp             TCCCBTTCTTTTTTCTTC
T ss_pred             CCccCCcCHHHHhCCCCC
Confidence            777666666666666555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=8.3e-26  Score=205.11  Aligned_cols=260  Identities=16%  Similarity=0.164  Sum_probs=169.6

Q ss_pred             CCcccc--CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-ccc-cCCCCcchhh-----cccccccccccchh
Q 048681            3 SISGLF--RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-LTR-NISSSPLLHL-----ITSIEYLSTLNYLV   73 (266)
Q Consensus         3 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~~-----~~~L~~L~~~~~~~   73 (266)
                      .|+.+.  ++++|++|++++|.+.+.+|..|+++++|++|++++|. +++ .+|. .+..+     +++|++|++++|..
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcC
Confidence            466777  88888889998888888888888888888888888887 776 6666 55553     26777777777762


Q ss_pred             ---hh--hccCCCCcceecccC--------------------------cccccCcccccC-ccEEEccCccccccCCccc
Q 048681           74 ---LV--SMLHFPNSFTITMSW--------------------------RPFRMPIQSHWH-LATLYVSKKFFQGNIPLEI  121 (266)
Q Consensus        74 ---~~--~~~~~~~~~~~~~~~--------------------------~~l~~~~~~~~~-L~~L~l~~n~~~~~~~~~~  121 (266)
                         +.  .+..++++...+.+.                          ..+|..+..+++ |++|++++|.++ .+|..+
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~  396 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF  396 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence               22  233344333222111                          234445555555 666666666665 555443


Q ss_pred             ccc-CCCCcEEEcccccccccCCcccc-------CCCCCCEEEccCCeeeecCCccccccccchhHHHhhhccccccccc
Q 048681          122 GVY-FPRLMYLNLSRNEFDGSIPSSIG-------DLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSY  193 (266)
Q Consensus       122 ~~~-~~~L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  193 (266)
                      ... +++|+.|++++|.+.+..|..+.       .+++|+.|++++|+++ .+|..++..+.+++.+++..+....++..
T Consensus       397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~  475 (636)
T 4eco_A          397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKN  475 (636)
T ss_dssp             CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred             hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence            321 22566666666666555555555       5567777777777776 56666666677777777776655533322


Q ss_pred             CCCC-----cCCCCccEEEccCCcccccCCcccc--ccccCCeeecccccccccCC---------eEEe------eCCee
Q 048681          194 SYKG-----KPLNKMYGIDLSCNKLVGEIPPQIG--KLTRVRALNLSHNNLTGVIP---------SLDV------SYNNL  251 (266)
Q Consensus       194 ~~~~-----~~~~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~---------~l~l------~~n~i  251 (266)
                      .+..     ..++.|+.|++++|.++ .+|..+.  .+++|+.|++++|++++.++         .|++      ++|.+
T Consensus       476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred             HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence            2211     11227888888888888 6777776  78888888888888887432         6777      45777


Q ss_pred             eecCChhhhhcccCC
Q 048681          252 NGKIPPQLVELNALA  266 (266)
Q Consensus       252 ~~~~p~~~~~~~~l~  266 (266)
                      .+.+|.++.++++|+
T Consensus       555 ~~~~p~~l~~l~~L~  569 (636)
T 4eco_A          555 LREWPEGITLCPSLT  569 (636)
T ss_dssp             CCCCCTTGGGCSSCC
T ss_pred             cccChHHHhcCCCCC
Confidence            778888888877764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=1.8e-25  Score=207.59  Aligned_cols=256  Identities=18%  Similarity=0.211  Sum_probs=172.6

Q ss_pred             CCcccc--CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-ccc-cCCCCcchhhcc-------cccccccccc
Q 048681            3 SISGLF--RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-LTR-NISSSPLLHLIT-------SIEYLSTLNY   71 (266)
Q Consensus         3 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~~~~-------~L~~L~~~~~   71 (266)
                      .|+.+.  ++++|++|++++|.+.+.+|..|.++++|++|++++|+ +++ .+|. .+..+ +       +|+.|++++|
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L-~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRL-ADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHH-HHCTTTTTTCCEEECCSS
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhh-hhcccccCCccEEEeeCC
Confidence            466666  99999999999999888999999999999999999998 876 6776 66665 4       8888888888


Q ss_pred             hh---hh--hccCCCCcceecc---cCcccccCcccccCccEEEccCccccccCCccccccCCC-CcEEEcccccccccC
Q 048681           72 LV---LV--SMLHFPNSFTITM---SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPR-LMYLNLSRNEFDGSI  142 (266)
Q Consensus        72 ~~---~~--~~~~~~~~~~~~~---~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~  142 (266)
                      ..   +.  .+..++++..++.   ....+| .+..+++|++|++++|.+. .+|..+.. +++ |+.|++++|.+. .+
T Consensus       559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SC
T ss_pred             cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cC
Confidence            73   32  3444554444322   223455 5566666666666666665 55555544 445 666666666654 44


Q ss_pred             CccccCC-------------------------------CCCCEEEccCCeeeecCCccccccccchhHHHhhhccccccc
Q 048681          143 PSSIGDL-------------------------------NSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKET  191 (266)
Q Consensus       143 ~~~l~~l-------------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  191 (266)
                      |..+...                               ++|+.|++++|+++ .+|..++..+.+++.|+++.+....++
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip  713 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIP  713 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccC
Confidence            4433322                               24555666666555 455555556667777777766555433


Q ss_pred             ccCCCCc-----CCCCccEEEccCCcccccCCcccc--ccccCCeeecccccccccCC---------eEEeeC------C
Q 048681          192 SYSYKGK-----PLNKMYGIDLSCNKLVGEIPPQIG--KLTRVRALNLSHNNLTGVIP---------SLDVSY------N  249 (266)
Q Consensus       192 ~~~~~~~-----~~~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~---------~l~l~~------n  249 (266)
                      ...+...     .++.|+.|+|++|.++ .+|..+.  .+++|+.|++++|.+++.++         .|++++      |
T Consensus       714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N  792 (876)
T 4ecn_A          714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGN  792 (876)
T ss_dssp             TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred             hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccc
Confidence            3322211     1238888888888888 7787776  78888888888888887533         788865      7


Q ss_pred             eeeecCChhhhhcccCC
Q 048681          250 NLNGKIPPQLVELNALA  266 (266)
Q Consensus       250 ~i~~~~p~~~~~~~~l~  266 (266)
                      .+.+.+|.++.++++|+
T Consensus       793 ~l~~~ip~~l~~L~~L~  809 (876)
T 4ecn_A          793 RILRQWPTGITTCPSLI  809 (876)
T ss_dssp             BCCCCCCTTGGGCSSCC
T ss_pred             cccccChHHHhcCCCCC
Confidence            77888888888887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.6e-25  Score=203.17  Aligned_cols=229  Identities=18%  Similarity=0.225  Sum_probs=164.9

Q ss_pred             CCccccCCCCCcEEECCCccCccC-----------------CChhhh--cCCCCcEEeccCCcccccCCCCcchhhcccc
Q 048681            3 SISGLFRLRNLQELHMGANDLRGT-----------------LPWCLE--NITSLKVLDLYLNQLTRNISSSPLLHLITSI   63 (266)
Q Consensus         3 ~~~~~~~l~~L~~L~l~~n~i~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L   63 (266)
                      .|+.|.++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|. .+..+ ++|
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l-~~L  275 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKAL-PEM  275 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTC-SSC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcC-CCC
Confidence            366799999999999999999975                 899988  999999999999999999998 89888 999


Q ss_pred             cccccccch------hhhhccCC------CCcce---ecccCccccc--CcccccCccEEEccCccccccCCccccccCC
Q 048681           64 EYLSTLNYL------VLVSMLHF------PNSFT---ITMSWRPFRM--PIQSHWHLATLYVSKKFFQGNIPLEIGVYFP  126 (266)
Q Consensus        64 ~~L~~~~~~------~~~~~~~~------~~~~~---~~~~~~~l~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  126 (266)
                      ++|++++|.      ++..+..+      +++..   .......+|.  .+..+++|++|++++|.+++.+| .+.. ++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~-l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE-EE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC-CC
Confidence            999999996      23333332      44444   3344557888  88999999999999999998888 5554 78


Q ss_pred             CCcEEEcccccccccCCccccCCCC-CCEEEccCCeeeecCCccccc-cccchhHHHhhhcccccccccCCC-----CcC
Q 048681          127 RLMYLNLSRNEFDGSIPSSIGDLNS-LKFLDLSHNQLTGEIPKHLAI-GCFNLEYLVESLMFTTKETSYSYK-----GKP  199 (266)
Q Consensus       127 ~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~-----~~~  199 (266)
                      +|+.|++++|.+. .+|..+..+++ |+.|++++|+++ .+|..+.. .+.+++.+++..+......+..+.     ...
T Consensus       354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~  431 (636)
T 4eco_A          354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK  431 (636)
T ss_dssp             EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred             CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence            9999999999998 78888888888 999999999988 67765432 233677777666654432221111     012


Q ss_pred             CCCccEEEccCCcccccCCcc-ccccccCCeeeccccccc
Q 048681          200 LNKMYGIDLSCNKLVGEIPPQ-IGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~  238 (266)
                      +++|+.|++++|.++ .+|.. +..+++|++|++++|.++
T Consensus       432 ~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          432 GINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             CCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence            345555555555555 33332 233444444444444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=7.5e-25  Score=192.43  Aligned_cols=250  Identities=16%  Similarity=0.132  Sum_probs=184.8

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh---hhh-ccCCCCcce
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV---LVS-MLHFPNSFT   85 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~---~~~-~~~~~~~~~   85 (266)
                      .++++.|++++|.+.+..+..|.++++|++|++++|.+++..|. .|..+ ++|++|++++|..   +.. +..++++..
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  108 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNL-FNLRTLGLRSNRLKLIPLGVFTGLSNLTK  108 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCC-ccCCEEECCCCcCCccCcccccCCCCCCE
Confidence            36899999999999988899999999999999999999977677 78888 9999999999973   221 234455544


Q ss_pred             ecccCcc----cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681           86 ITMSWRP----FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ  161 (266)
Q Consensus        86 ~~~~~~~----l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  161 (266)
                      .+.+.+.    .+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|+
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            4444333    245567777888888888877744444443 37788888888887764444557777888888888887


Q ss_pred             eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC-ccccccccCCeeeccccccccc
Q 048681          162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP-PQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      +.+ ++...+..+.+++.+++..+.....  .+.......+|+.|++++|.++ .+| ..+..+++|+.|++++|.+++.
T Consensus       188 i~~-~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~  263 (477)
T 2id5_A          188 INA-IRDYSFKRLYRLKVLEISHWPYLDT--MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTI  263 (477)
T ss_dssp             CCE-ECTTCSCSCTTCCEEEEECCTTCCE--ECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred             CcE-eChhhcccCcccceeeCCCCccccc--cCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCcc
Confidence            774 4444446677777777665432221  1111222348999999999998 455 5688999999999999999866


Q ss_pred             CC----------eEEeeCCeeeecCChhhhhcccCC
Q 048681          241 IP----------SLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       241 ~~----------~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      .+          +|++++|.+.+..|..|.++++|+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (477)
T 2id5_A          264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR  299 (477)
T ss_dssp             CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred             ChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence            44          899999999998999999888774

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=9.6e-25  Score=179.32  Aligned_cols=230  Identities=19%  Similarity=0.172  Sum_probs=173.5

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      .++|++|++++|.+....+..|..+++|++|++++|.+++..+. .+..+ ++|++|++++|...               
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~~l---------------   93 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGL-ALLEQLDLSDNAQL---------------   93 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTC-TTCCEEECCSCTTC---------------
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCc-cCCCEEeCCCCCCc---------------
Confidence            56899999999999988888899999999999999999876666 78777 99999999998511               


Q ss_pred             Cccc-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681           90 WRPF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK  168 (266)
Q Consensus        90 ~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  168 (266)
                       ..+ +..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++.
T Consensus        94 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~  170 (285)
T 1ozn_A           94 -RSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE  170 (285)
T ss_dssp             -CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECT
T ss_pred             -cccCHHHhcCCcCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCH
Confidence             122 3456677888888888888874334333 34788888888888887555566778888888888888887 4555


Q ss_pred             cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681          169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------  242 (266)
Q Consensus       169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------  242 (266)
                      ..+..+.+++.+++..+........  ....++.|+.|++++|.+++..+..+..+++|+.|++++|++...-+      
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~  248 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPH--AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA  248 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred             HHhcCccccCEEECCCCcccccCHh--HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence            5456677777777776655444322  23347889999999999886555568888999999999998885433      


Q ss_pred             ---eEEeeCCeeeecCChhhhh
Q 048681          243 ---SLDVSYNNLNGKIPPQLVE  261 (266)
Q Consensus       243 ---~l~l~~n~i~~~~p~~~~~  261 (266)
                         .+..+.+.+....|+.+.+
T Consensus       249 ~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             HHHHCCSEECCCBEEESGGGTT
T ss_pred             HHHhcccccCccccCCchHhCC
Confidence               4566677777778877755

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=2.5e-24  Score=180.63  Aligned_cols=245  Identities=16%  Similarity=0.149  Sum_probs=175.5

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccC-CCCcceecc-
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLH-FPNSFTITM-   88 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~~~~~~~-   88 (266)
                      ++|++|++++|.+....|..|.++++|++|++++|.+++..|. .+..+ ++|++|++++|....-... .+.+...+. 
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~  131 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPL-RKLQKLYISKNHLVEIPPNLPSSLVELRIH  131 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTC-TTCCEEECCSSCCCSCCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCc-CCCCEEECCCCcCCccCccccccCCEEECC
Confidence            6788889998888877778888889999999999888866566 67777 8889999888873211111 123322222 


Q ss_pred             --cCccccc-CcccccCccEEEccCccccc--cCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681           89 --SWRPFRM-PIQSHWHLATLYVSKKFFQG--NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus        89 --~~~~l~~-~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                        ....++. .+..+++|++|++++|.++.  ..+..+.. + +|+.|++++|.+. .+|..+.  ++|+.|++++|+++
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ  206 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCC
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCC
Confidence              2233443 36677888888888887752  23333332 4 7888888888876 4555443  68888889888887


Q ss_pred             ecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-
Q 048681          164 GEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-  242 (266)
Q Consensus       164 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-  242 (266)
                      + ++...+..+.+++.+++..+.........  ...++.|+.|++++|.++ .+|..+..+++|++|++++|++++..+ 
T Consensus       207 ~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          207 A-IELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             C-CCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             c-cCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence            4 44444467788888888877655544322  234789999999999998 788889999999999999999986532 


Q ss_pred             ---------------eEEeeCCeee--ecCChhhhhcccCC
Q 048681          243 ---------------SLDVSYNNLN--GKIPPQLVELNALA  266 (266)
Q Consensus       243 ---------------~l~l~~n~i~--~~~p~~~~~~~~l~  266 (266)
                                     .+++++|++.  +..|..|..+++|+
T Consensus       283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             HccccccccccccccceEeecCcccccccCcccccccchhh
Confidence                           7899999987  56778888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=8.9e-24  Score=177.08  Aligned_cols=245  Identities=15%  Similarity=0.121  Sum_probs=178.2

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhc-cCCCCcceeccc
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSM-LHFPNSFTITMS   89 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-~~~~~~~~~~~~   89 (266)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+++..|. .+..+ ++|++|++++|....-. ...+.+.....+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPL-VKLERLYLSKNQLKELPEKMPKTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTC-TTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCC-CCCCEEECCCCcCCccChhhcccccEEECC
Confidence            6788888888888877777888888888888888888866566 77777 88888888888732111 111233333333


Q ss_pred             C---cccc-cCcccccCccEEEccCccccc--cCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681           90 W---RPFR-MPIQSHWHLATLYVSKKFFQG--NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus        90 ~---~~l~-~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                      .   ..++ ..+..+++|++|++++|.+..  ..+..+. .+++|+.|++++|.+. .+|..+.  ++|+.|++++|+++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~  205 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT  205 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence            2   2222 346778889999999988853  3343444 4889999999999887 4555543  78999999999888


Q ss_pred             ecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-
Q 048681          164 GEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-  242 (266)
Q Consensus       164 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-  242 (266)
                      +..+ ..+..+.+++.+++..+........  ....++.|+.|++++|.++ .+|..+..+++|++|++++|++++..+ 
T Consensus       206 ~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          206 KVDA-ASLKGLNNLAKLGLSFNSISAVDNG--SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             EECT-GGGTTCTTCCEEECCSSCCCEECTT--TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             ccCH-HHhcCCCCCCEEECCCCcCceeChh--hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence            5444 3446778888888877765554432  2334789999999999998 788889999999999999999986532 


Q ss_pred             ---------------eEEeeCCeeee--cCChhhhhcccC
Q 048681          243 ---------------SLDVSYNNLNG--KIPPQLVELNAL  265 (266)
Q Consensus       243 ---------------~l~l~~n~i~~--~~p~~~~~~~~l  265 (266)
                                     .+++++|++..  ..|..|..+.++
T Consensus       282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l  321 (330)
T 1xku_A          282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  321 (330)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             hcCCcccccccccccceEeecCcccccccCccccccccce
Confidence                           79999999863  456677766654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=2e-24  Score=181.00  Aligned_cols=199  Identities=21%  Similarity=0.232  Sum_probs=141.7

Q ss_pred             CCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCC
Q 048681            3 SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPN   82 (266)
Q Consensus         3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~   82 (266)
                      .|+.+.++++|++|++++|.+. .+|..|..+++|++|++++|.++ .+|. .+..+ ++|++|++++|.....+..   
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l-~~L~~L~L~~n~~~~~~p~---  168 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASL-NRLRELSIRACPELTELPE---  168 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGC-TTCCEEEEEEETTCCCCCS---
T ss_pred             cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcC-cCCCEEECCCCCCccccCh---
Confidence            3566888999999999999999 88999999999999999999998 7887 88888 9999999999873222110   


Q ss_pred             cceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681           83 SFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                      .+.    ...++..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+. .+|..+..+++|+.|++++|.+
T Consensus       169 ~~~----~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          169 PLA----STDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA  241 (328)
T ss_dssp             CSE----EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTT
T ss_pred             hHh----hccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcc
Confidence            000    0112233455788888888888887 77777665 788888888888887 5666788888888888888887


Q ss_pred             eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      .+.+|..+ ..                          +++|+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|
T Consensus       242 ~~~~p~~~-~~--------------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          242 LRNYPPIF-GG--------------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             CCBCCCCT-TC--------------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             hhhhHHHh-cC--------------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            76666544 22                          3455555555555444555555555555555555555554444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.4e-24  Score=180.06  Aligned_cols=222  Identities=22%  Similarity=0.224  Sum_probs=114.7

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccC--CCCcchhhcccccccccccchh---hhhccCCCCcce
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNI--SSSPLLHLITSIEYLSTLNYLV---LVSMLHFPNSFT   85 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~~L~~L~~~~~~~---~~~~~~~~~~~~   85 (266)
                      ++|++|++++|.+....+..|+++++|++|++++|.++...  +. .+..+ ++|++|++++|..   +..+..++.+..
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~-~~L~~L~Ls~n~i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGT-TSLKYLDLSFNGVITMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-HHHSC-SCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc-ccccc-cccCEEECCCCccccChhhcCCCCCCCE
Confidence            68999999999998666666889999999999999887421  33 45555 8999999998873   122223333332


Q ss_pred             ecccCc---ccc--cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccc-cCCccccCCCCCCEEEccC
Q 048681           86 ITMSWR---PFR--MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDG-SIPSSIGDLNSLKFLDLSH  159 (266)
Q Consensus        86 ~~~~~~---~l~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~  159 (266)
                      .+.+.+   .++  ..+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+.+ ..|..+..+++|+.|++++
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            222221   122  13444455555555555554332222222 4455555555555542 2444455555555555555


Q ss_pred             CeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccc-cCCeeeccccccc
Q 048681          160 NQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLT-RVRALNLSHNNLT  238 (266)
Q Consensus       160 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~  238 (266)
                      |++++..+.. +..+.+++.+++..+.........+  ..+++|+.|++++|.+++..+..+..++ +|++|++++|+++
T Consensus       185 n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          185 CQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPY--KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECTTSCCSBCCSGGG--TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCcCCcCHHH-hcCCCCCCEEECCCCccCccChhhc--cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            5554322222 2334444444444443332222111  1234444444444444444444444442 4444444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=3.6e-24  Score=193.34  Aligned_cols=138  Identities=22%  Similarity=0.144  Sum_probs=66.8

Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681          125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY  204 (266)
Q Consensus       125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~  204 (266)
                      +++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..+...+..+.+++.+++..+........  ....+++|+
T Consensus       375 ~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~  451 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG--IFLGLTSLN  451 (606)
T ss_dssp             CSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCC
T ss_pred             CCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh--hhcCCCCCC
Confidence            444444444444443 23344555555555555555555433323334455555555554443322211  122345555


Q ss_pred             EEEccCCccccc-CCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681          205 GIDLSCNKLVGE-IPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       205 ~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      .|++++|.+++. +|..+..+++|++|++++|.+++.+|          .|++++|.+++..|..+.++++|
T Consensus       452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence            555555555532 44445555555555555555554433          45555555555445555554444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=8.5e-24  Score=177.21  Aligned_cols=235  Identities=18%  Similarity=0.194  Sum_probs=166.4

Q ss_pred             CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcceec
Q 048681           12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSFTIT   87 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~~~~   87 (266)
                      +++.++++++.+. .+|..+.  +++++|++++|.+++..+. .+..+ ++|++|++++|.+    +..+..++.+...+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDG-DFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTT-TTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChh-hhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            7899999999988 5565554  7899999999999965554 67777 9999999999983    23344555554443


Q ss_pred             cc---CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccc--cCCccccCCCCCCEEEccCCee
Q 048681           88 MS---WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDG--SIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        88 ~~---~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                      .+   ...+|..+.  ++|++|++++|.+. .++...+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|++
T Consensus       107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          107 LSKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CCSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            33   334444443  67888888888877 4444444447788888888888752  4566777888888888888888


Q ss_pred             eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      + .+|....   .+++.+++..+.........  ...++.|+.|++++|.+++..+..+..+++|++|++++|+++..++
T Consensus       184 ~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  257 (330)
T 1xku_A          184 T-TIPQGLP---PSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  257 (330)
T ss_dssp             C-SCCSSCC---TTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             c-cCCcccc---ccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence            7 4655443   56666676666554443222  2346788888888888886666678888888888888888875433


Q ss_pred             ---------eEEeeCCeeeecCChhhh
Q 048681          243 ---------SLDVSYNNLNGKIPPQLV  260 (266)
Q Consensus       243 ---------~l~l~~n~i~~~~p~~~~  260 (266)
                               .|++++|.|++.-+..|.
T Consensus       258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             hhccCCCcCEEECCCCcCCccChhhcC
Confidence                     788888888865555553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=6.8e-25  Score=194.66  Aligned_cols=62  Identities=21%  Similarity=0.164  Sum_probs=35.8

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      .|.++++|++|++++|.+.+..|..|+++++|++|++++|.++ .+|. .  .+ ++|++|++++|.
T Consensus        40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l-~~L~~L~L~~N~  101 (520)
T 2z7x_B           40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC-H--PT-VNLKHLDLSFNA  101 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEEC-C--CC-CCCSEEECCSSC
T ss_pred             hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCc-c--cc-CCccEEeccCCc
Confidence            4556666666666666666555666666666666666666655 3443 2  23 555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=3.5e-24  Score=183.52  Aligned_cols=244  Identities=18%  Similarity=0.129  Sum_probs=140.5

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh----hhccCCCCcc
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL----VSMLHFPNSF   84 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~----~~~~~~~~~~   84 (266)
                      .+++++.++++++.+....+..|..+++|++|++++|.+++..+. .+..+ ++|++|++++|.+.    ..+..++.+.
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-hccCC-CCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            356777777777777755555567777777777777777654444 56565 77777777776621    1122222222


Q ss_pred             eecc---cCcccccC-cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           85 TITM---SWRPFRMP-IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        85 ~~~~---~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                      ..+.   ....+|.. +..+++|++|++++|.+.+ +++..+..+++|+.|++++|.+...   .+..+++|+.+++++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence            2211   22334433 3556667777777766663 3333223366677777777666532   1223333333333333


Q ss_pred             eeee------------------cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcccc
Q 048681          161 QLTG------------------EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIG  222 (266)
Q Consensus       161 ~~~~------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  222 (266)
                      .+++                  .++..   ...+++.+++..+......    ....++.|++|++++|.+++..|..+.
T Consensus       197 ~l~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          197 LLSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             CCSEEECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cccccCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccH----HHcCCCCccEEECCCCcCCCcChhHcc
Confidence            3321                  11111   1123444444444333321    223467888888888888866677788


Q ss_pred             ccccCCeeecccccccccCC---------eEEeeCCeeeecCChhhhhcccCC
Q 048681          223 KLTRVRALNLSHNNLTGVIP---------SLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       223 ~l~~L~~L~l~~n~l~~~~~---------~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      .+++|++|++++|++++.++         .|++++|.+. .+|..+..+++|+
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~  321 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE  321 (390)
T ss_dssp             TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred             ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence            88888888888888875422         7888888887 6777777666653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=2.7e-24  Score=192.67  Aligned_cols=63  Identities=24%  Similarity=0.177  Sum_probs=38.0

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      +.|.++++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|. .  .+ ++|++|++++|.
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l-~~L~~L~Ls~N~  132 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC-C--PM-ASLRHLDLSFND  132 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECS-C--CC-TTCSEEECCSSC
T ss_pred             hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCc-c--cc-ccCCEEECCCCC
Confidence            35566666666666666666666666666666666666666665 3444 2  33 555555555555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=7.9e-24  Score=184.79  Aligned_cols=217  Identities=20%  Similarity=0.204  Sum_probs=141.6

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      +++++|++++|.+.+..+..|.++++|++|++++|.+++..+. .|..+ ++|++|++++|.+                 
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l-----------------  135 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG-AFNGL-ASLNTLELFDNWL-----------------  135 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTC-TTCCEEECCSSCC-----------------
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-hccCc-ccCCEEECCCCcC-----------------
Confidence            5788888888888888888888888888888888888865555 67776 8888888888763                 


Q ss_pred             cccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEccccc-ccccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681           91 RPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNE-FDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK  168 (266)
Q Consensus        91 ~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  168 (266)
                      ..++ ..+..+++|++|++++|.+. .++...+..+++|+.|++++|. +....+..+..+++|+.|++++|+++ .+|.
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~  213 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN  213 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC
T ss_pred             CccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc
Confidence            1222 23556677777777777776 4555444447777777777743 33223345667777777777777776 3432


Q ss_pred             cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681          169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------  242 (266)
Q Consensus       169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------  242 (266)
                        ...+.+++.++++.+.........+  ..+++|+.|++++|.+++..+..|..+++|+.|++++|++++.++      
T Consensus       214 --~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          214 --LTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             --CTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             --ccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence              2344455555555544433322222  235667777777777665556666666777777777776665433      


Q ss_pred             ----eEEeeCCeee
Q 048681          243 ----SLDVSYNNLN  252 (266)
Q Consensus       243 ----~l~l~~n~i~  252 (266)
                          .|++++|++.
T Consensus       290 ~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          290 RYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEccCCCcC
Confidence                5666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=2.8e-25  Score=185.30  Aligned_cols=225  Identities=21%  Similarity=0.186  Sum_probs=170.0

Q ss_pred             ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCccee
Q 048681            7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTI   86 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~   86 (266)
                      +..+++|++|++++|.+....|..|..+++|++|++++|.+++..   .+..+ ++|++|++++|....           
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l-~~L~~L~Ls~n~l~~-----------   94 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESL-STLRTLDLNNNYVQE-----------   94 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---EETTC-TTCCEEECCSSEEEE-----------
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---hhhhc-CCCCEEECcCCcccc-----------
Confidence            346779999999999999888899999999999999999998644   36666 999999999987311           


Q ss_pred             cccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC
Q 048681           87 TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI  166 (266)
Q Consensus        87 ~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  166 (266)
                                +...++|++|++++|.+++ ++..   .+++|+.|++++|.+....+..+..+++|+.|++++|++++..
T Consensus        95 ----------l~~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           95 ----------LLVGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             ----------EEECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             ----------ccCCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence                      1123678888888888773 3322   2567888888888887555666777788888888888887555


Q ss_pred             CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----
Q 048681          167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----  242 (266)
Q Consensus       167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----  242 (266)
                      +..+...+.+++.++++.+.........    .+++|++|++++|.++ .+|..+..+++|++|++++|.+++.++    
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  235 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRF  235 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred             HHHHhhccCcCCEEECCCCcCccccccc----ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhc
Confidence            5555556677777777777655553222    2788999999999998 456668889999999999999886543    


Q ss_pred             -----eEEeeCCeee-ecCChhhhhcccC
Q 048681          243 -----SLDVSYNNLN-GKIPPQLVELNAL  265 (266)
Q Consensus       243 -----~l~l~~n~i~-~~~p~~~~~~~~l  265 (266)
                           .|++++|.+. +.+|..+..++.|
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccc
Confidence                 8999999988 6677766665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=182.46  Aligned_cols=217  Identities=18%  Similarity=0.164  Sum_probs=146.4

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      ++++.|++++|.+....+..|.++++|++|++++|.++...+. .|..+ ++|++|++++|.+                 
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l-~~L~~L~L~~n~l-----------------  124 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-AFNGL-ANLNTLELFDNRL-----------------  124 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-GGTTC-SSCCEEECCSSCC-----------------
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-hccCC-ccCCEEECCCCcC-----------------
Confidence            5688888888888877778888888888888888888754444 66666 8888888888763                 


Q ss_pred             cccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccc-cccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681           91 RPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEF-DGSIPSSIGDLNSLKFLDLSHNQLTGEIPK  168 (266)
Q Consensus        91 ~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  168 (266)
                      ..++ ..+..+++|++|++++|.+. .++...+..+++|+.|++++|.. ....+..+..+++|+.|++++|+++ .+|.
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~  202 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN  202 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC
T ss_pred             CeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc
Confidence            2222 23566677888888888776 45554444477788888877443 3233346677778888888888776 4543


Q ss_pred             cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681          169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------  242 (266)
Q Consensus       169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------  242 (266)
                        +..+.+++.|+++.+........  ....+++|+.|++++|.+++..+..|..+++|+.|++++|++++.++      
T Consensus       203 --~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          203 --LTPLIKLDELDLSGNHLSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             --CTTCSSCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             --cCCCcccCEEECCCCccCccChh--hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence              24455566666655544433322  22336777777777777776666667777777777777777775543      


Q ss_pred             ----eEEeeCCeee
Q 048681          243 ----SLDVSYNNLN  252 (266)
Q Consensus       243 ----~l~l~~n~i~  252 (266)
                          .|++++|++.
T Consensus       279 ~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          279 HHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEcCCCCcc
Confidence                6777777764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=1.5e-23  Score=191.72  Aligned_cols=251  Identities=20%  Similarity=0.124  Sum_probs=132.0

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh---h-hccCCCCccee
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL---V-SMLHFPNSFTI   86 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~---~-~~~~~~~~~~~   86 (266)
                      +++++|++++|.+.+..+..|.++++|++|++++|.+++..|. .+..+ ++|++|++++|...   . .+..++++...
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcc-cCcCEEECCCCccCccChhhhccCCCCCEE
Confidence            6889999999999887777899999999999999999876666 77777 89999999888631   1 12222222222


Q ss_pred             cccC---cccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCcccc--CCCCCCEEEccCC
Q 048681           87 TMSW---RPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIG--DLNSLKFLDLSHN  160 (266)
Q Consensus        87 ~~~~---~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~n  160 (266)
                      +.+.   ..++ ..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+.+..+..+.  .+++|+.|++++|
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            2111   1222 23444444555555554444322222222 44455555554444422222221  2344455555554


Q ss_pred             eeeecCCccccccccchhHHHhhhcccccccccCC-CCcCCCCccEEEccCCcccccCCcccccccc--CCeeecccccc
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSY-KGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR--VRALNLSHNNL  237 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~l~~n~l  237 (266)
                      ++++..+ ..+..+.+++.+.+..+.......... .....+.|+.|++++|.+.+..|..+..++.  |+.|++++|.+
T Consensus       182 ~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          182 QIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             cccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            4442222 211222222222211111000000000 0001245666677777666555666665544  77777777766


Q ss_pred             cccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681          238 TGVIP----------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       238 ~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      ++.++          .|++++|.+.+..|..|.++++|
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  298 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV  298 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence            65533          66777777766666666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=2.6e-24  Score=194.26  Aligned_cols=131  Identities=15%  Similarity=0.127  Sum_probs=75.9

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh----hhccCCC
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL----VSMLHFP   81 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~----~~~~~~~   81 (266)
                      .|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+++..|. .|..+ ++|++|++++|...    ..+..++
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~  128 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGL-TSLENLVAVETKLASLESFPIGQLI  128 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTC-TTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred             hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCc-ccCCEEEccCCccccccccccCCCC
Confidence            466677777777777777766666677777777777777777655555 66666 67777777776621    2233344


Q ss_pred             CcceecccCc-----ccccCcccccCccEEEccCccccccCCccccccCCC----CcEEEccccccc
Q 048681           82 NSFTITMSWR-----PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPR----LMYLNLSRNEFD  139 (266)
Q Consensus        82 ~~~~~~~~~~-----~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~----L~~L~l~~~~~~  139 (266)
                      ++...+.+.+     .+|..+..+++|++|++++|.+++..+..+.. +.+    +.++++++|.+.
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPID  194 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCC
T ss_pred             CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCcc
Confidence            4433322221     24555666666666666666666433333322 222    335666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=8.9e-24  Score=187.46  Aligned_cols=64  Identities=22%  Similarity=0.257  Sum_probs=47.6

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccc-cCCCCcchhhcccccccccccch
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR-NISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ++.|.++++|++|++++|.++. +|..  .+++|++|++++|.+++ .+|. .+..+ ++|++|++++|.
T Consensus        62 ~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l-~~L~~L~L~~n~  126 (520)
T 2z7x_B           62 ISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICK-EFGNM-SQLKFLGLSTTH  126 (520)
T ss_dssp             GGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCG-GGGGC-TTCCEEEEEESS
T ss_pred             hHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchh-hhccC-CcceEEEecCcc
Confidence            4567888888888888888874 4444  67888888888888875 3455 67666 788888887776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=4.3e-24  Score=198.46  Aligned_cols=178  Identities=18%  Similarity=0.188  Sum_probs=142.6

Q ss_pred             CCccccCCCCCcEEECCCccCcc-----------------CCChhhh--cCCCCcEEeccCCcccccCCCCcchhhcccc
Q 048681            3 SISGLFRLRNLQELHMGANDLRG-----------------TLPWCLE--NITSLKVLDLYLNQLTRNISSSPLLHLITSI   63 (266)
Q Consensus         3 ~~~~~~~l~~L~~L~l~~n~i~~-----------------~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L   63 (266)
                      .|+.|.++++|++|++++|.+++                 .+|..++  ++++|++|++++|.+.+.+|. .+..+ ++|
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L-~~L  517 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDL-PEL  517 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGC-SSC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCC-CCC
Confidence            46789999999999999999997                 2788877  999999999999999999997 88888 999


Q ss_pred             cccccccch------hhhhccCC-------CCcce---ecccCccccc--CcccccCccEEEccCccccccCCccccccC
Q 048681           64 EYLSTLNYL------VLVSMLHF-------PNSFT---ITMSWRPFRM--PIQSHWHLATLYVSKKFFQGNIPLEIGVYF  125 (266)
Q Consensus        64 ~~L~~~~~~------~~~~~~~~-------~~~~~---~~~~~~~l~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  125 (266)
                      +.|++++|.      ++..+..+       +++..   ....+..+|.  .+..+++|++|++++|.++ .+| .+.. +
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~-L  594 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT-N  594 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT-T
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC-C
Confidence            999999996      23323322       24443   3344557888  8999999999999999998 888 5544 8


Q ss_pred             CCCcEEEcccccccccCCccccCCCC-CCEEEccCCeeeecCCccccc-cccchhHHHhhhccc
Q 048681          126 PRLMYLNLSRNEFDGSIPSSIGDLNS-LKFLDLSHNQLTGEIPKHLAI-GCFNLEYLVESLMFT  187 (266)
Q Consensus       126 ~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~-~~~~l~~l~~~~~~~  187 (266)
                      ++|+.|++++|.+. .+|..+..+++ |+.|++++|+++ .+|..+.. ...+++.++++.+..
T Consensus       595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcC
Confidence            89999999999998 88888999998 999999999998 67754421 122366666665544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=8.4e-25  Score=192.53  Aligned_cols=222  Identities=21%  Similarity=0.185  Sum_probs=171.9

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM   88 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~   88 (266)
                      .+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+   +..+ ++|++|++++|.+..             
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l-~~L~~L~Ls~N~l~~-------------   94 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESL-STLRTLDLNNNYVQE-------------   94 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTC-TTCCEEECCSSEEEE-------------
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccC-CCCCEEEecCCcCCC-------------
Confidence            44589999999999998888999999999999999999986543   6666 999999999997311             


Q ss_pred             cCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681           89 SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK  168 (266)
Q Consensus        89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  168 (266)
                              +...++|++|++++|.+++. +..   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|.
T Consensus        95 --------l~~~~~L~~L~L~~N~l~~~-~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (487)
T 3oja_A           95 --------LLVGPSIETLHAANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (487)
T ss_dssp             --------EEECTTCCEEECCSSCCCCE-EEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred             --------CCCCCCcCEEECcCCcCCCC-Ccc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence                    11226788888888888733 322   256788888888888766667777788888888888888766666


Q ss_pred             cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681          169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------  242 (266)
Q Consensus       169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------  242 (266)
                      .+...+.+++.|+++.+.........    .++.|+.|+|++|.+++ +|..+..+++|+.|++++|.+++.++      
T Consensus       163 ~l~~~l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~  237 (487)
T 3oja_A          163 ELAASSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ  237 (487)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred             HHhhhCCcccEEecCCCccccccccc----cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCC
Confidence            66556777888887777665553322    37899999999999995 56668899999999999999997544      


Q ss_pred             ---eEEeeCCeee-ecCChhhhhccc
Q 048681          243 ---SLDVSYNNLN-GKIPPQLVELNA  264 (266)
Q Consensus       243 ---~l~l~~n~i~-~~~p~~~~~~~~  264 (266)
                         .|++++|.+. +.+|..+..++.
T Consensus       238 ~L~~L~l~~N~l~c~~~~~~~~~l~~  263 (487)
T 3oja_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQR  263 (487)
T ss_dssp             TCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred             CCCEEEcCCCCCcCcchHHHHHhCCC
Confidence               8999999988 667776666543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=197.05  Aligned_cols=256  Identities=19%  Similarity=0.125  Sum_probs=125.3

Q ss_pred             ccccCCCCCcEEECCCccCccC-CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh----h--c
Q 048681            5 SGLFRLRNLQELHMGANDLRGT-LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV----S--M   77 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~----~--~   77 (266)
                      ..|.++++|++|++++|...+. .|.+|.++++|++|++++|.+++..|. .|..+ ++|++|++++|....    .  +
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGL-FHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSC-SSCCCEECTTCCCSSCCSTTCCC
T ss_pred             hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCC-cccCEeeCcCCCCCcccccCccc
Confidence            4455566666666665533222 255556666666666666666554454 55555 566666666555211    1  2


Q ss_pred             cCCCCcceecccCcc---c--ccCcccccCccEEEccCccccccCCccccccC--CCCcEEEcccccccccCCccccCCC
Q 048681           78 LHFPNSFTITMSWRP---F--RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYF--PRLMYLNLSRNEFDGSIPSSIGDLN  150 (266)
Q Consensus        78 ~~~~~~~~~~~~~~~---l--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~  150 (266)
                      ..++++..++.+.+.   +  +..+..+++|++|++++|.+++..+..+.. +  ++|+.|+++.|.+.+..+..+..++
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~  198 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCM  198 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccccchhhcC
Confidence            233333332222211   1  123455555555555555554333333322 2  3455555555554433333333333


Q ss_pred             C------CCEEEccCCeeeecCCcccccc-------------------------------------ccchhHHHhhhccc
Q 048681          151 S------LKFLDLSHNQLTGEIPKHLAIG-------------------------------------CFNLEYLVESLMFT  187 (266)
Q Consensus       151 ~------L~~L~l~~n~~~~~~~~~~~~~-------------------------------------~~~l~~l~~~~~~~  187 (266)
                      +      |+.|++++|++++..+..+...                                     ..+++.+++..+..
T Consensus       199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l  278 (844)
T 3j0a_A          199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV  278 (844)
T ss_dssp             CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred             CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence            2      6666666665544333322211                                     02233333333322


Q ss_pred             ccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCCh
Q 048681          188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPP  257 (266)
Q Consensus       188 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~  257 (266)
                      ....  +.....++.|+.|++++|.+++..+..|..+++|++|++++|.+++..+          .|++++|.+.+..|.
T Consensus       279 ~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~  356 (844)
T 3j0a_A          279 FSLN--SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ  356 (844)
T ss_dssp             CEEC--SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred             cccC--hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence            2221  1222335666666666666665555566666666666666666654433          666666666655555


Q ss_pred             hhhhcccC
Q 048681          258 QLVELNAL  265 (266)
Q Consensus       258 ~~~~~~~l  265 (266)
                      .|.++++|
T Consensus       357 ~~~~l~~L  364 (844)
T 3j0a_A          357 TFKFLEKL  364 (844)
T ss_dssp             CSCSCCCC
T ss_pred             hhcCCCCC
Confidence            56655554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.2e-23  Score=189.74  Aligned_cols=243  Identities=18%  Similarity=0.128  Sum_probs=140.4

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh----hccCCCCcce
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV----SMLHFPNSFT   85 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~----~~~~~~~~~~   85 (266)
                      +.+++.+++++|.+....+..|..+++|++|++++|.+++..+. .|..+ ++|++|++++|.+..    .+..++++..
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-HhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            56667777777777665555666777777777777777654444 55555 777777777666211    1122222222


Q ss_pred             ecc---cCcccccC-cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681           86 ITM---SWRPFRMP-IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ  161 (266)
Q Consensus        86 ~~~---~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  161 (266)
                      ++.   .+..+|.. +..+++|++|++++|.+++..|..+.. +++|+.|++++|.+.+. +  +..+++|+.|++++|.
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT-CTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc-CCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCc
Confidence            111   11233333 355666666666666666333333333 66666666666666532 1  2233334443333333


Q ss_pred             eee------------------cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccc
Q 048681          162 LTG------------------EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGK  223 (266)
Q Consensus       162 ~~~------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  223 (266)
                      +++                  .++...   ..+++.+++..+.....    .....++.|+.|++++|.+++..|..+..
T Consensus       204 l~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          204 LSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             CSEEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             cccccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC----hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            321                  011111   12344444444433322    22334788888899888888777888888


Q ss_pred             cccCCeeecccccccccCC---------eEEeeCCeeeecCChhhhhcccCC
Q 048681          224 LTRVRALNLSHNNLTGVIP---------SLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       224 l~~L~~L~l~~n~l~~~~~---------~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      +++|+.|++++|.+++.++         .|++++|.+. .+|..+..+++|+
T Consensus       277 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~  327 (597)
T 3oja_B          277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE  327 (597)
T ss_dssp             CSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred             ccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence            8889999998888876432         7888888888 6888777776653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=6.8e-24  Score=173.16  Aligned_cols=210  Identities=21%  Similarity=0.260  Sum_probs=165.5

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS   83 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~   83 (266)
                      ...+..+++|+.|++++|.+..  ...+..+++|++|++++|.+++ + . .+..+ ++|++|++++|..          
T Consensus        34 ~~~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~-~l~~l-~~L~~L~L~~n~l----------   97 (272)
T 3rfs_A           34 AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-S-ALKEL-TNLTYLILTGNQL----------   97 (272)
T ss_dssp             EECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-G-GGTTC-TTCCEEECTTSCC----------
T ss_pred             ccccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-h-hhcCC-CCCCEEECCCCcc----------
Confidence            3445678899999999999873  3458889999999999999875 2 2 56666 8899999988863          


Q ss_pred             ceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681           84 FTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        84 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                             ..++ ..+..+++|++|++++|.++ .+++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++
T Consensus        98 -------~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A           98 -------QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             -------CCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             -------CccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence                   1222 23567788999999999988 45555444488999999999988855566678889999999999988


Q ss_pred             eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      ++ ++...+                          ..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus       170 ~~-~~~~~~--------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          170 QS-LPEGVF--------------------------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CC-CCTTTT--------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             Cc-cCHHHh--------------------------cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            74 433321                          136899999999999997667778999999999999999998877


Q ss_pred             ---eEEeeCCeeeecCChhhhhccc
Q 048681          243 ---SLDVSYNNLNGKIPPQLVELNA  264 (266)
Q Consensus       243 ---~l~l~~n~i~~~~p~~~~~~~~  264 (266)
                         .+++..|.+.|.+|.+++.+..
T Consensus       223 ~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          223 GIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHHHHHHHhCCCcccCcccccCC
Confidence               7889999999999999887653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=5.4e-24  Score=176.54  Aligned_cols=226  Identities=21%  Similarity=0.227  Sum_probs=171.7

Q ss_pred             ccCCCCCcEEECCCccCccC--CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh-----hhccC
Q 048681            7 LFRLRNLQELHMGANDLRGT--LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL-----VSMLH   79 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~-----~~~~~   79 (266)
                      |.++++|++|++++|.+...  .+..+..+++|++|++++|.++ .++. .+..+ ++|++|++++|...     ..+..
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~-~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~  124 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGL-EQLEHLDFQHSNLKQMSEFSVFLS  124 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEE-EEETC-TTCCEEECTTSEEESSTTTTTTTT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChh-hcCCC-CCCCEEECCCCcccccccchhhhh
Confidence            68999999999999998843  3678888999999999999998 4665 67777 99999999999832     23455


Q ss_pred             CCCcceecccCcc----cccCcccccCccEEEccCccccc-cCCccccccCCCCcEEEcccccccccCCccccCCCCCCE
Q 048681           80 FPNSFTITMSWRP----FRMPIQSHWHLATLYVSKKFFQG-NIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKF  154 (266)
Q Consensus        80 ~~~~~~~~~~~~~----l~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  154 (266)
                      ++++...+.+.+.    .+..+..+++|++|++++|.+.+ .+|..+.. +++|+.|++++|.+.+..+..+..+++|+.
T Consensus       125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence            5666555544433    34567888999999999999985 35655554 899999999999998777888999999999


Q ss_pred             EEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCC-CCccEEEccCCcccccCC--ccccccccCCeee
Q 048681          155 LDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPL-NKMYGIDLSCNKLVGEIP--PQIGKLTRVRALN  231 (266)
Q Consensus       155 L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~  231 (266)
                      |++++|+++ .++...+..+.+++.+++..+...........  .+ +.|+.|++++|.++....  .....+...+.+.
T Consensus       204 L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~  280 (306)
T 2z66_A          204 LNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL  280 (306)
T ss_dssp             EECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC--CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB
T ss_pred             EECCCCccC-ccChhhccCcccCCEeECCCCCCcccCHHHHH--hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh
Confidence            999999998 45555557888999999998876655443332  24 589999999999975422  2234455566655


Q ss_pred             cccccccc
Q 048681          232 LSHNNLTG  239 (266)
Q Consensus       232 l~~n~l~~  239 (266)
                      +..+.+..
T Consensus       281 ~~~~~~~C  288 (306)
T 2z66_A          281 VEVERMEC  288 (306)
T ss_dssp             SCGGGCBE
T ss_pred             cccccccc
Confidence            55555553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=4e-23  Score=174.13  Aligned_cols=243  Identities=21%  Similarity=0.300  Sum_probs=136.1

Q ss_pred             CCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh--hhhccC
Q 048681            2 NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV--LVSMLH   79 (266)
Q Consensus         2 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~--~~~~~~   79 (266)
                      .+++++..+++|++|++++|.+....+  |..+++|++|++++|.++. ++  .+..+ ++|++|++++|.+  ...+..
T Consensus        57 ~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~--~~~~l-~~L~~L~l~~n~i~~~~~~~~  130 (347)
T 4fmz_A           57 ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS--ALQNL-TNLRELYLNEDNISDISPLAN  130 (347)
T ss_dssp             CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTC-TTCSEEECTTSCCCCCGGGTT
T ss_pred             ccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch--HHcCC-CcCCEEECcCCcccCchhhcc
Confidence            345567777888888888887774433  7777778888888777764 22  45555 7777777777762  112333


Q ss_pred             CCCcceecccCc---ccccCcccccCccEEEccCccccc---------------------cCCccccccCCCCcEEEccc
Q 048681           80 FPNSFTITMSWR---PFRMPIQSHWHLATLYVSKKFFQG---------------------NIPLEIGVYFPRLMYLNLSR  135 (266)
Q Consensus        80 ~~~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~n~~~~---------------------~~~~~~~~~~~~L~~L~l~~  135 (266)
                      ++++...+.+..   .....+..+++|++|++++|.+.+                     .++. +. .+++|+.+++++
T Consensus       131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~l~~L~~L~l~~  208 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LA-SLTSLHYFTAYV  208 (347)
T ss_dssp             CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GG-GCTTCCEEECCS
T ss_pred             CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-cc-CCCccceeeccc
Confidence            444333222221   111223344444444444444431                     2222 21 244455555555


Q ss_pred             ccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccc
Q 048681          136 NEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG  215 (266)
Q Consensus       136 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~  215 (266)
                      |.+... +. +..+++|+.|++++|++++ .+.  +..+.+++.+++..+......    ....+++|+.|++++|.+++
T Consensus       209 n~l~~~-~~-~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          209 NQITDI-TP-VANMTRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTNQISDIN----AVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             SCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCC-ch-hhcCCcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCCccCCCh----hHhcCCCcCEEEccCCccCC
Confidence            544321 11 4556666666666666653 322  345566666666655444432    12346677777777777763


Q ss_pred             cCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681          216 EIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       216 ~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                       + ..+..+++|+.|++++|.+++..+          .|++++|.+++..|  +..+++|
T Consensus       280 -~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          280 -I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             -C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             -C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence             3 346677777777777777765433          77788887775444  5555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=2.9e-23  Score=185.90  Aligned_cols=64  Identities=22%  Similarity=0.349  Sum_probs=49.8

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCccccc-CCCCcchhhcccccccccccch
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRN-ISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ++.|.++++|++|++++|.++ .+|..  .+++|++|++++|.+++. +|. .+..+ ++|++|++++|.
T Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~-~~~~l-~~L~~L~L~~n~  157 (562)
T 3a79_B           93 FHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCK-EFGNL-TKLTFLGLSAAK  157 (562)
T ss_dssp             TTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCG-GGGGC-TTCCEEEEECSB
T ss_pred             HHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchH-hhccc-CcccEEecCCCc
Confidence            456888899999999999888 44544  788889999998888752 334 67777 888888888887

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1.6e-23  Score=179.40  Aligned_cols=237  Identities=19%  Similarity=0.186  Sum_probs=161.1

Q ss_pred             ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh---hhh-ccCCCC
Q 048681            7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV---LVS-MLHFPN   82 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~---~~~-~~~~~~   82 (266)
                      |.++++|++|++++|.+....+..|..+++|++|++++|.+++..+. .+..+ ++|++|++++|..   +.. +..+++
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~  142 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNV-PLLTVLVLERNDLSSLPRGIFHNTPK  142 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCC-CCCCEEECCCCccCcCCHHHhcCCCC
Confidence            57789999999999999988888999999999999999999865555 67777 9999999999883   222 244555


Q ss_pred             cceecccCc---cc-ccCcccccCccEEEccCccccccCCcccccc----------------------------------
Q 048681           83 SFTITMSWR---PF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVY----------------------------------  124 (266)
Q Consensus        83 ~~~~~~~~~---~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~----------------------------------  124 (266)
                      +...+.+.+   .+ +..+..+++|++|++++|.+++ ++......                                  
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~  221 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  221 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence            555444433   33 4458889999999999999873 33211110                                  


Q ss_pred             ---CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCC
Q 048681          125 ---FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLN  201 (266)
Q Consensus       125 ---~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  201 (266)
                         .++|+.|++++|.+.+  ...+..+++|+.|++++|++++..|..+ ..+.+++.+++..+......   .....++
T Consensus       222 ~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~---~~~~~l~  295 (390)
T 3o6n_A          222 GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVALN---LYGQPIP  295 (390)
T ss_dssp             CCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSCCCEEE---CSSSCCT
T ss_pred             ccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHc-cccccCCEEECCCCcCcccC---cccCCCC
Confidence               1134444444444432  2345666777777777777764444333 56667777777666544432   2224467


Q ss_pred             CccEEEccCCcccccCCccccccccCCeeecccccccccCC-------eEEeeCCeeee
Q 048681          202 KMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SLDVSYNNLNG  253 (266)
Q Consensus       202 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l~l~~n~i~~  253 (266)
                      .|+.|++++|.++ .+|..+..+++|+.|++++|.+++...       .|++++|++..
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence            7888888888777 566667777888888888887775432       78888888765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=1.5e-22  Score=170.64  Aligned_cols=230  Identities=23%  Similarity=0.304  Sum_probs=162.1

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh---h----
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV---S----   76 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~---~----   76 (266)
                      .+.+.++++|++|++++|.+...  ..|..+++|++|++++|.+++. +  .+..+ ++|++|++++|....   .    
T Consensus        81 ~~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~--~~~~l-~~L~~L~l~~n~~~~~~~~~~~l  154 (347)
T 4fmz_A           81 ISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-S--PLANL-TKMYSLNLGANHNLSDLSPLSNM  154 (347)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-G--GGTTC-TTCCEEECTTCTTCCCCGGGTTC
T ss_pred             chhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-h--hhccC-CceeEEECCCCCCcccccchhhC
Confidence            34467777777777777777642  3577777777777777776632 2  23444 666666666653111   1    


Q ss_pred             ------------------ccCCCCcceecccCcc---cccCcccccCccEEEccCccccccCCccccccCCCCcEEEccc
Q 048681           77 ------------------MLHFPNSFTITMSWRP---FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSR  135 (266)
Q Consensus        77 ------------------~~~~~~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  135 (266)
                                        +..++.+...+.+...   ++. +..+++|+.+++++|.+.+ ++. +. .+++|++|++++
T Consensus       155 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~-~~~~L~~L~l~~  230 (347)
T 4fmz_A          155 TGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD-ITP-VA-NMTRLNSLKIGN  230 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GG-GCTTCCEEECCS
T ss_pred             CCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCC-Cch-hh-cCCcCCEEEccC
Confidence                              2222333332222222   233 6778899999999999873 333 33 488999999999


Q ss_pred             ccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccc
Q 048681          136 NEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG  215 (266)
Q Consensus       136 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~  215 (266)
                      |.+.. .+. +..+++|+.|++++|++++ ++  .+..+.+++.+++..+......    ....++.|+.|++++|.+++
T Consensus       231 n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          231 NKITD-LSP-LANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             SCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCG
T ss_pred             CccCC-Ccc-hhcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCCcCCC
Confidence            99974 343 8899999999999999984 42  3467888888888887666552    23458999999999999997


Q ss_pred             cCCccccccccCCeeecccccccccCC--------eEEeeCCeee
Q 048681          216 EIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLN  252 (266)
Q Consensus       216 ~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~  252 (266)
                      ..+..+..+++|++|++++|++++.+|        .|++++|.|+
T Consensus       302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          302 EDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred             cChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence            788889999999999999999998765        8999999886

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=7.2e-23  Score=178.73  Aligned_cols=213  Identities=21%  Similarity=0.179  Sum_probs=160.1

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS   83 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~   83 (266)
                      ++.|.++++|++|++++|.+....+..|.++++|++|++++|.++. ++...+..+ ++|++|++++|.+.         
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-~~L~~L~L~~N~l~---------  160 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYL-SKLRELWLRNNPIE---------  160 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSC-TTCCEEECCSCCCC---------
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhccc-CCCCEEECCCCCcc---------
Confidence            4678999999999999999999889999999999999999999985 444267677 99999999999741         


Q ss_pred             ceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681           84 FTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        84 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                              .++ ..+..+++|++|++++|...+.++...+..+++|+.|++++|.+. .+| .+..+++|+.|++++|++
T Consensus       161 --------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          161 --------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             --------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCC
T ss_pred             --------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcC
Confidence                    122 235566777777777754444666555555777788888777776 333 456777777788877777


Q ss_pred             eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      ++ ++...+..+.+++.+++..+.........+  ..+++|+.|+|++|.+++..+..+..+++|+.|++++|++...
T Consensus       231 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          231 PE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             SE-ECGGGGTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cc-cCcccccCccCCCEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            74 333444667777777777665554443332  3478999999999999966666788899999999999998744

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.2e-24  Score=182.46  Aligned_cols=242  Identities=14%  Similarity=0.104  Sum_probs=141.8

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh---hhh-ccCCCCccee
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV---LVS-MLHFPNSFTI   86 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~---~~~-~~~~~~~~~~   86 (266)
                      ++|++|++++|.+....+..|.++++|++|++++|.+++..+. .+..+ ++|++|++++|..   +.. +..++++...
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSL-GSLEHLDLSYNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCC-CCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence            4788999999998877777888899999999999988865555 67777 8899999988873   111 2333333332


Q ss_pred             cc---cCccccc--CcccccCccEEEccCcc-ccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           87 TM---SWRPFRM--PIQSHWHLATLYVSKKF-FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        87 ~~---~~~~l~~--~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                      +.   ....++.  .+..+++|++|++++|. +. .+++..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            22   2233443  45566666666666663 33 333322233666666666666666555666666666666666666


Q ss_pred             eeeecCCccccccccchhHHHhhhcccccccccCCC-CcCCCCccEEEccCCcccc----cCCccccccccCCeeecccc
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYK-GKPLNKMYGIDLSCNKLVG----EIPPQIGKLTRVRALNLSHN  235 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n  235 (266)
                      +++ .++...+..+.+++.+++..+........... ......++.+++.++.+.+    .+|..+..+++|+.|++++|
T Consensus       209 ~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             CST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             ccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence            664 44444444455555555555544332211111 0112334444444444432    24445566667777777777


Q ss_pred             cccccCC----------eEEeeCCeeeecCC
Q 048681          236 NLTGVIP----------SLDVSYNNLNGKIP  256 (266)
Q Consensus       236 ~l~~~~~----------~l~l~~n~i~~~~p  256 (266)
                      ++++.++          .|++++|++.+..|
T Consensus       288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            6664332          66777777665433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=2.2e-23  Score=186.04  Aligned_cols=137  Identities=24%  Similarity=0.190  Sum_probs=72.7

Q ss_pred             CCCCcEEEcccccccccCC---ccccCCCCCCEEEccCCeeeecCCc--cccccccchhHHHhhhcccccccccCCCCcC
Q 048681          125 FPRLMYLNLSRNEFDGSIP---SSIGDLNSLKFLDLSHNQLTGEIPK--HLAIGCFNLEYLVESLMFTTKETSYSYKGKP  199 (266)
Q Consensus       125 ~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  199 (266)
                      +++|+.|++++|.+.+..|   ..+..+++|+.|++++|++++ ++.  ..+..+.+++.++++.+....+   +.....
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~  408 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPM---PDSCQW  408 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCC---CSCCCC
T ss_pred             CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccC---Chhhcc
Confidence            4555555555555543321   223445555555555555542 221  2234455555555555543322   222223


Q ss_pred             CCCccEEEccCCcccccCCcc------------------ccccccCCeeecccccccccCC--------eEEeeCCeeee
Q 048681          200 LNKMYGIDLSCNKLVGEIPPQ------------------IGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLNG  253 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~~~~~~~------------------~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~~  253 (266)
                      +++|++|++++|.++ .+|..                  +..+++|++|++++|+++..++        .|++++|.+++
T Consensus       409 ~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          409 PEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             CTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCC
T ss_pred             cccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCC
Confidence            444555555555443 12211                  1356777777888777774432        78888888887


Q ss_pred             cCChhhhhcccCC
Q 048681          254 KIPPQLVELNALA  266 (266)
Q Consensus       254 ~~p~~~~~~~~l~  266 (266)
                      ..|..+.++++|+
T Consensus       488 ~~~~~~~~l~~L~  500 (549)
T 2z81_A          488 VPDGIFDRLTSLQ  500 (549)
T ss_dssp             CCTTGGGGCTTCC
T ss_pred             cCHHHHhcCcccC
Confidence            7777777777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.8e-23  Score=187.28  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh----hhccCC
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL----VSMLHF   80 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~----~~~~~~   80 (266)
                      ..|.++++|++|++++|.+.+..+.+|+++++|++|++++|.+++..+. .|..+ ++|++|++++|...    ..+..+
T Consensus        46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l  123 (570)
T 2z63_A           46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGL-SSLQKLVAVETNLASLENFPIGHL  123 (570)
T ss_dssp             TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTC-TTCCEEECTTSCCCCSTTCSCTTC
T ss_pred             hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCc-cccccccccccccccCCCcccccc
Confidence            3567778888888888877777777777888888888888877754444 66666 77888888777621    123444


Q ss_pred             CCcceecccCc-----ccccCcccccCccEEEccCccccc
Q 048681           81 PNSFTITMSWR-----PFRMPIQSHWHLATLYVSKKFFQG  115 (266)
Q Consensus        81 ~~~~~~~~~~~-----~l~~~~~~~~~L~~L~l~~n~~~~  115 (266)
                      +++...+.+.+     .+|..+..+++|++|++++|.+++
T Consensus       124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            55544333332     246667777777777777777653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=6.9e-23  Score=183.50  Aligned_cols=118  Identities=22%  Similarity=0.217  Sum_probs=60.8

Q ss_pred             ccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccc-ccCCcccccc
Q 048681          146 IGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV-GEIPPQIGKL  224 (266)
Q Consensus       146 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l  224 (266)
                      +..+++|+.|++++|++.+..+...+..+.+++.+++..+.......  .....++.|+.|++++|.++ +.+|..+..+
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l  469 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  469 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT--TTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch--hhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence            44444555555555554433332333444455555544443322221  12223556666666666655 3455556666


Q ss_pred             ccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681          225 TRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       225 ~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      ++|++|++++|.+++..|          .|++++|.+++..|..|.++++|
T Consensus       470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  520 (570)
T 2z63_A          470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL  520 (570)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence            666666666666665533          56666666665555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.90  E-value=1.5e-22  Score=185.00  Aligned_cols=256  Identities=20%  Similarity=0.222  Sum_probs=148.9

Q ss_pred             ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccc-cCCCCcchhh-cccccccccccchh----hhhccCC
Q 048681            7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTR-NISSSPLLHL-ITSIEYLSTLNYLV----LVSMLHF   80 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~-~~~L~~L~~~~~~~----~~~~~~~   80 (266)
                      |..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. .++...+... .+.|+.|++++|..    +..+..+
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  404 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL  404 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred             cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence            3444455555555555554444445555555555555444211 1111111111 02444444444441    1112223


Q ss_pred             CCcceecccCcc----cc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccc--ccCCccccCCCCCC
Q 048681           81 PNSFTITMSWRP----FR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFD--GSIPSSIGDLNSLK  153 (266)
Q Consensus        81 ~~~~~~~~~~~~----l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~  153 (266)
                      +++...+.+.+.    ++ ..+..+++|++|++++|++.+..+..+ ..+++|+.|++.+|.+.  +..|..+..+++|+
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh-hcCcccccchhccccccccccCCcccccCCCCC
Confidence            333333322222    22 334455566666666666553222222 23566666666666654  34567778888899


Q ss_pred             EEEccCCeeeecCCccccccccchhHHHhhhcccccccccCC------CCcCCCCccEEEccCCcccccCCc-ccccccc
Q 048681          154 FLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSY------KGKPLNKMYGIDLSCNKLVGEIPP-QIGKLTR  226 (266)
Q Consensus       154 ~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~------~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~  226 (266)
                      .|++++|+++ .+++..+..+.+++.++++.+..........      ....++.|+.|++++|.++ .+|. .|.++++
T Consensus       484 ~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~  561 (680)
T 1ziw_A          484 ILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE  561 (680)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             EEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccC
Confidence            9999999887 5666666778888888888776655432221      1345789999999999998 5554 6888999


Q ss_pred             CCeeecccccccccCC----------eEEeeCCeeeecCChhhh-hcccC
Q 048681          227 VRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLV-ELNAL  265 (266)
Q Consensus       227 L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~-~~~~l  265 (266)
                      |+.|++++|++++.++          .|++++|.+++..|..+. .+++|
T Consensus       562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  611 (680)
T 1ziw_A          562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL  611 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred             cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence            9999999999886654          799999999976666555 45544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=4.5e-24  Score=190.51  Aligned_cols=152  Identities=16%  Similarity=0.089  Sum_probs=80.6

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCccee
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSFTI   86 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~~~   86 (266)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+++..+. .|..+ ++|++|++++|..    +..+..++++...
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-hcccc-ccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence            4566666666666555555566666666666666666544444 45554 5666666666551    1113334444333


Q ss_pred             cccCcc-----cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCcccc--------------
Q 048681           87 TMSWRP-----FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIG--------------  147 (266)
Q Consensus        87 ~~~~~~-----l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--------------  147 (266)
                      +.+.+.     .+..+..+++|++|++++|.+.+.+|+..+..+++|++|++++|.+.+..|..+.              
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            322221     2344555666666666666533344433223355666666666665544444443              


Q ss_pred             ----------CCCCCCEEEccCCeeee
Q 048681          148 ----------DLNSLKFLDLSHNQLTG  164 (266)
Q Consensus       148 ----------~l~~L~~L~l~~n~~~~  164 (266)
                                .+++|+.|++++|++.+
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             ccccchhhHhhcccccEEEccCCcccc
Confidence                      35677777777777653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=4.6e-23  Score=192.73  Aligned_cols=256  Identities=18%  Similarity=0.176  Sum_probs=179.5

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcc
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSF   84 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~   84 (266)
                      -.++|++|++++|.++...|..|+++++|++|++++|.+.+.++...|..+ ++|++|++++|.+    +..+..++++.
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLF  100 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCcccC
Confidence            458899999999999988999999999999999999976656644378887 9999999999983    33344555554


Q ss_pred             eecccCccc----ccC--cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCC--CCCCEEE
Q 048681           85 TITMSWRPF----RMP--IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDL--NSLKFLD  156 (266)
Q Consensus        85 ~~~~~~~~l----~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~  156 (266)
                      .++.+.+.+    +..  +..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+  ++|+.|+
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            444433332    222  66677777777777777644333333337777777777777765556666555  6777777


Q ss_pred             ccCCeeeecCCcccccccc------chhHHHhhhcccccc------------------------------------cccC
Q 048681          157 LSHNQLTGEIPKHLAIGCF------NLEYLVESLMFTTKE------------------------------------TSYS  194 (266)
Q Consensus       157 l~~n~~~~~~~~~~~~~~~------~l~~l~~~~~~~~~~------------------------------------~~~~  194 (266)
                      +++|.+.+..+..+. .+.      .++.++++.+.....                                    ....
T Consensus       181 L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~  259 (844)
T 3j0a_A          181 LAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT  259 (844)
T ss_dssp             ECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred             CCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence            777777654443331 111      255555554421110                                    0011


Q ss_pred             CCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhccc
Q 048681          195 YKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVELNA  264 (266)
Q Consensus       195 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~~~  264 (266)
                      +.....++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+          .|++++|.+.+..|..|.++++
T Consensus       260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  339 (844)
T 3j0a_A          260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK  339 (844)
T ss_dssp             TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred             hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence            111124789999999999987778889999999999999999987754          8999999999888999988887


Q ss_pred             CC
Q 048681          265 LA  266 (266)
Q Consensus       265 l~  266 (266)
                      |+
T Consensus       340 L~  341 (844)
T 3j0a_A          340 VA  341 (844)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=6.8e-23  Score=178.28  Aligned_cols=211  Identities=22%  Similarity=0.237  Sum_probs=154.7

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS   83 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~   83 (266)
                      ++.|.++++|++|++++|.+....+..|.++++|++|++++|.++. ++...|..+ ++|++|++++|.+.         
T Consensus        81 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-~~L~~L~L~~N~i~---------  149 (440)
T 3zyj_A           81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYL-SKLKELWLRNNPIE---------  149 (440)
T ss_dssp             TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSC-SSCCEEECCSCCCC---------
T ss_pred             HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-eCHhHhhcc-ccCceeeCCCCccc---------
Confidence            3678899999999999999998888999999999999999999985 444267777 99999999999741         


Q ss_pred             ceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681           84 FTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        84 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                              .++ ..+..+++|++|++++|...+.++...+..+++|+.|++++|.+. .+| .+..+++|+.|++++|++
T Consensus       150 --------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          150 --------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             --------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred             --------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence                    111 234566677777777644444555554444677777777777775 344 356667777777777777


Q ss_pred             eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                      ++..+ ..+..+.+++.+++..+.........+  ..+++|+.|+|++|.+++..+..+..+++|+.|++++|++.
T Consensus       220 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          220 SAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAF--DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CEECT-TTTTTCTTCCEEECTTCCCCEECTTSS--TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccCh-hhhccCccCCEEECCCCceeEEChhhh--cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            64333 334566677777666665554443322  34789999999999999666667888999999999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.2e-23  Score=186.96  Aligned_cols=238  Identities=18%  Similarity=0.186  Sum_probs=174.3

Q ss_pred             ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh---hhh-ccCCCC
Q 048681            7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV---LVS-MLHFPN   82 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~---~~~-~~~~~~   82 (266)
                      |.++++|++|++++|.+.+..|..|+.+++|++|++++|.+++..+. .|..+ ++|++|++++|.+   +.. +..+++
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~  148 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNV-PLLTVLVLERNDLSSLPRGIFHNTPK  148 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCC-CCCCEEEeeCCCCCCCCHHHhccCCC
Confidence            56789999999999999988888999999999999999999875555 67777 9999999999982   222 245566


Q ss_pred             cceecccCcc---c-ccCcccccCccEEEccCccccccCCcccccc----------------------------------
Q 048681           83 SFTITMSWRP---F-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVY----------------------------------  124 (266)
Q Consensus        83 ~~~~~~~~~~---l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~----------------------------------  124 (266)
                      +..++.+.+.   + |..+..+++|++|++++|.+++ ++......                                  
T Consensus       149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~  227 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  227 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred             CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence            6554444333   3 4568889999999999999874 33221110                                  


Q ss_pred             ---CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCC
Q 048681          125 ---FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLN  201 (266)
Q Consensus       125 ---~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  201 (266)
                         .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..+ ..+.+++.|++..+....+.   .....++
T Consensus       228 ~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~---~~~~~l~  301 (597)
T 3oja_B          228 GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVALN---LYGQPIP  301 (597)
T ss_dssp             CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSCCCEEE---CSSSCCT
T ss_pred             cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCCCCCCC---cccccCC
Confidence               1234444555555432  3456778888999999988886555444 57788888888877655543   3334578


Q ss_pred             CccEEEccCCcccccCCccccccccCCeeecccccccccCC-------eEEeeCCeeeec
Q 048681          202 KMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SLDVSYNNLNGK  254 (266)
Q Consensus       202 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l~l~~n~i~~~  254 (266)
                      .|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.+.       .|++++|++.+.
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence            8999999999988 678878888999999999999886533       899999998764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=9.4e-23  Score=171.01  Aligned_cols=235  Identities=17%  Similarity=0.189  Sum_probs=152.7

Q ss_pred             CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh----hhhccCCCCcceec
Q 048681           12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV----LVSMLHFPNSFTIT   87 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~----~~~~~~~~~~~~~~   87 (266)
                      +++.++++++.+. .+|..+.  ++|++|++++|.+++..+. .+..+ ++|++|++++|.+    +..+..++.+...+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKD-DFKGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTT-TTTTC-TTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHh-HhhCC-CCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            6899999999998 5566553  7999999999999976565 78887 9999999999983    23344444444433


Q ss_pred             cc---CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccc--cCCccccCCCCCCEEEccCCee
Q 048681           88 MS---WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDG--SIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        88 ~~---~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                      .+   ...+|..+.  ++|++|++++|.+. .++...+..+++|+.|++++|.+..  ..+..+..+ +|+.|++++|++
T Consensus       109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CCSSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            32   233444333  56677777777666 4444433446677777777776642  344555555 677777777766


Q ss_pred             eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      + .+|..+.   .+++.+++..+........  ....++.|+.|++++|.+++..+..+..+++|++|++++|+++..++
T Consensus       185 ~-~l~~~~~---~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  258 (332)
T 2ft3_A          185 T-GIPKDLP---ETLNELHLDHNKIQAIELE--DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA  258 (332)
T ss_dssp             S-SCCSSSC---SSCSCCBCCSSCCCCCCTT--SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred             C-ccCcccc---CCCCEEECCCCcCCccCHH--HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence            6 3554443   3555555555544433322  23346778888888888776555567778888888888887774433


Q ss_pred             ---------eEEeeCCeeeecCChhhhh
Q 048681          243 ---------SLDVSYNNLNGKIPPQLVE  261 (266)
Q Consensus       243 ---------~l~l~~n~i~~~~p~~~~~  261 (266)
                               .|++++|.+++..+..|..
T Consensus       259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             TGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             hhhcCccCCEEECCCCCCCccChhHccc
Confidence                     6888888887555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=2.7e-22  Score=164.67  Aligned_cols=217  Identities=17%  Similarity=0.120  Sum_probs=174.2

Q ss_pred             CcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681           13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP   92 (266)
Q Consensus        13 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (266)
                      -++++.+++.+. .+|..+  .++|++|++++|.+++..+. .+..+ ++|++|++++|..                 ..
T Consensus        13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~-~~~~~-~~L~~L~l~~n~l-----------------~~   70 (285)
T 1ozn_A           13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAA-SFRAC-RNLTILWLHSNVL-----------------AR   70 (285)
T ss_dssp             SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTT-TTTTC-TTCCEEECCSSCC-----------------CE
T ss_pred             CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHH-HcccC-CCCCEEECCCCcc-----------------ce
Confidence            367899999888 445544  47999999999999965555 67777 9999999999864                 12


Q ss_pred             c-ccCcccccCccEEEccCcc-ccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681           93 F-RMPIQSHWHLATLYVSKKF-FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL  170 (266)
Q Consensus        93 l-~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  170 (266)
                      + +..+..+++|++|++++|. +. .+++..+..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++...
T Consensus        71 ~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~  148 (285)
T 1ozn_A           71 IDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT  148 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             eCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhH
Confidence            2 4557788999999999997 66 554444444899999999999998666788899999999999999998 566665


Q ss_pred             cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------
Q 048681          171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------  242 (266)
Q Consensus       171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------  242 (266)
                      +..+.+++.+++..+.........  ...++.|+.|++++|.+++..|..+..+++|+.|++++|.+++.++        
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  226 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             hccCCCccEEECCCCcccccCHHH--hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence            677888999888877655444322  3347899999999999997778889999999999999999987654        


Q ss_pred             --eEEeeCCeeeecC
Q 048681          243 --SLDVSYNNLNGKI  255 (266)
Q Consensus       243 --~l~l~~n~i~~~~  255 (266)
                        .|++++|++...-
T Consensus       227 L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          227 LQYLRLNDNPWVCDC  241 (285)
T ss_dssp             CCEEECCSSCEECSG
T ss_pred             cCEEeccCCCccCCC
Confidence              7999999987543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2.7e-22  Score=163.92  Aligned_cols=209  Identities=18%  Similarity=0.114  Sum_probs=157.9

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      ++|++|++++|.++...+..|.++++|++|++++|.+++..+. .+..+ ++|++|++++|.....              
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~~--------------   91 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSL-SHLSTLILTGNPIQSL--------------   91 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT-TTTTC-TTCCEEECTTCCCCEE--------------
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH-HccCC-cCCCEEECCCCccCcc--------------
Confidence            4699999999999988888999999999999999999865554 67777 9999999999874111              


Q ss_pred             cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCeeeecCCcc
Q 048681           91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS-IPSSIGDLNSLKFLDLSHNQLTGEIPKH  169 (266)
Q Consensus        91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~  169 (266)
                        .+..+..+++|++|++++|.+.+ ++......+++|++|++++|.+... +|..+..+++|+.|++++|++++ ++..
T Consensus        92 --~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~  167 (276)
T 2z62_A           92 --ALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCT  167 (276)
T ss_dssp             --CTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGG
T ss_pred             --ChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHH
Confidence              12456778899999999999984 4443334488999999999999753 58889999999999999999985 4433


Q ss_pred             ccccccchh----HHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          170 LAIGCFNLE----YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       170 ~~~~~~~l~----~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      .+..+.+++    .++++.+.........+   ...+|+.|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSS---CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HhhhhhhccccceeeecCCCcccccCcccc---CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            334444554    34444444433332222   23479999999999985545557888999999999999887655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=4.3e-22  Score=174.45  Aligned_cols=128  Identities=25%  Similarity=0.337  Sum_probs=65.5

Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681          125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY  204 (266)
Q Consensus       125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~  204 (266)
                      +++|+.|++++|.+.. + ..+..+++|+.|++++|++.+. +.  +..+.+++.+++..+.......    ...++.|+
T Consensus       220 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~  290 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISP----LAGLTALT  290 (466)
T ss_dssp             CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCS
T ss_pred             cCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccc-hh--hhcCCCCCEEECCCCccCcccc----ccCCCccC
Confidence            3344444444444331 1 2334444555555555544422 11  2344455555554444333322    22356666


Q ss_pred             EEEccCCcccccCCccccccccCCeeecccccccccCC--------eEEeeCCeeeecCChhhhhcccC
Q 048681          205 GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       205 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      .|++++|.+++ ++. +..+++|+.|++++|++++..|        +|++++|.+.+.  ..+.++++|
T Consensus       291 ~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  355 (466)
T 1o6v_A          291 NLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNI  355 (466)
T ss_dssp             EEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             eEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCC
Confidence            66666666663 222 5666777777777777665543        677777777642  356666555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.2e-23  Score=178.02  Aligned_cols=232  Identities=19%  Similarity=0.175  Sum_probs=168.0

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh---h--hccCC
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL---V--SMLHF   80 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~---~--~~~~~   80 (266)
                      .|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++ ++...+..+ ++|++|++++|...   .  .+..+
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l  148 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHL  148 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTC
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCC-ccCCEEECCCCCCcccCchhhhccC
Confidence            58899999999999999998888899999999999999999985 554146666 99999999999832   1  23445


Q ss_pred             CCcceeccc----Cccc-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCc-cccCCCCCCE
Q 048681           81 PNSFTITMS----WRPF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPS-SIGDLNSLKF  154 (266)
Q Consensus        81 ~~~~~~~~~----~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~  154 (266)
                      +++...+.+    ...+ +..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+. ..+. .+..+++|+.
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~  226 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-IQNVSHLILHMKQHI-LLLEIFVDVTSSVEC  226 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSCST-THHHHHHHHTTTEEE
T ss_pred             CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-cccCCeecCCCCccc-cchhhhhhhcccccE
Confidence            555543332    3334 457888999999999999998666666665 889999999999986 4443 3446899999


Q ss_pred             EEccCCeeeecCCcccc--ccccchhHHHhhhcccccc--cccCCCCcCCCCccEEEccCCcccccCCcc-ccccccCCe
Q 048681          155 LDLSHNQLTGEIPKHLA--IGCFNLEYLVESLMFTTKE--TSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ-IGKLTRVRA  229 (266)
Q Consensus       155 L~l~~n~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~  229 (266)
                      |++++|++++..+..+.  .....++.+.+..+...+.  ...+.....+++|+.|++++|.++ .+|.. +..+++|++
T Consensus       227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~  305 (353)
T 2z80_A          227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK  305 (353)
T ss_dssp             EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence            99999999854333221  1122222222222211110  111122234789999999999999 66765 589999999


Q ss_pred             eecccccccccCC
Q 048681          230 LNLSHNNLTGVIP  242 (266)
Q Consensus       230 L~l~~n~l~~~~~  242 (266)
                      |++++|++++..|
T Consensus       306 L~L~~N~~~~~~~  318 (353)
T 2z80_A          306 IWLHTNPWDCSCP  318 (353)
T ss_dssp             EECCSSCBCCCHH
T ss_pred             EEeeCCCccCcCC
Confidence            9999999998765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=4.1e-23  Score=171.78  Aligned_cols=139  Identities=24%  Similarity=0.244  Sum_probs=79.1

Q ss_pred             CCCCCcEEECCCccCccCCChhh--hcCCCCcEEeccCCcccccCCCCcchhhc----ccccccccccchhhhhccCCCC
Q 048681            9 RLRNLQELHMGANDLRGTLPWCL--ENITSLKVLDLYLNQLTRNISSSPLLHLI----TSIEYLSTLNYLVLVSMLHFPN   82 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~~~~----~~L~~L~~~~~~~~~~~~~~~~   82 (266)
                      ++++|++|++++|.+.+..|..+  ..+++|++|++++|.+++. |. .+..+.    ++|++|++++|.+         
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l---------  161 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHS---------  161 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSC---------
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCC---------
Confidence            56677777777777766666655  5667777777777776654 44 444442    5666666666653         


Q ss_pred             cceecccCccc-ccCcccccCccEEEccCcccccc--CCccc-cccCCCCcEEEcccccccc--cCC-ccccCCCCCCEE
Q 048681           83 SFTITMSWRPF-RMPIQSHWHLATLYVSKKFFQGN--IPLEI-GVYFPRLMYLNLSRNEFDG--SIP-SSIGDLNSLKFL  155 (266)
Q Consensus        83 ~~~~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L  155 (266)
                              ..+ +..+..+++|++|++++|++.+.  ++..+ +..+++|++|++++|.+..  ..+ ..+..+++|+.|
T Consensus       162 --------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L  233 (312)
T 1wwl_A          162 --------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL  233 (312)
T ss_dssp             --------CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred             --------ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence                    111 23455566666666666665433  12222 1235666666666666651  111 223455666666


Q ss_pred             EccCCeeeecC
Q 048681          156 DLSHNQLTGEI  166 (266)
Q Consensus       156 ~l~~n~~~~~~  166 (266)
                      ++++|++++..
T Consensus       234 ~Ls~N~l~~~~  244 (312)
T 1wwl_A          234 DLSHNSLRDAA  244 (312)
T ss_dssp             ECTTSCCCSSC
T ss_pred             ECCCCcCCccc
Confidence            66666666433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=1.2e-21  Score=171.73  Aligned_cols=150  Identities=21%  Similarity=0.281  Sum_probs=84.0

Q ss_pred             ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhH
Q 048681          100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY  179 (266)
Q Consensus       100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~  179 (266)
                      +++|++|++++|.+. .++ .+. .+++|+.|++++|.+.+..+  +..+++|+.|++++|++++ ++.  ...+.+++.
T Consensus       220 l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~  291 (466)
T 1o6v_A          220 LTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP--LAGLTALTN  291 (466)
T ss_dssp             CTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG--GTTCTTCSE
T ss_pred             cCCCCEEECCCCCcc-cch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc--ccCCCccCe
Confidence            344444444444444 221 222 25667777777776653222  5666677777777776663 322  345566666


Q ss_pred             HHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------eEEeeCCee
Q 048681          180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNL  251 (266)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i  251 (266)
                      +++..+.......    ...++.|+.|++++|.+++..|  +..+++|+.|++++|++++...        .|++++|.+
T Consensus       292 L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          292 LELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             EECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             EEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCcc
Confidence            6666554444332    2335667777777776664333  5666677777777776665421        667777776


Q ss_pred             eecCChhhhhcccC
Q 048681          252 NGKIPPQLVELNAL  265 (266)
Q Consensus       252 ~~~~p~~~~~~~~l  265 (266)
                      .+..|  +..+++|
T Consensus       366 ~~~~~--~~~l~~L  377 (466)
T 1o6v_A          366 SDLTP--LANLTRI  377 (466)
T ss_dssp             CBCGG--GTTCTTC
T ss_pred             Cccch--hhcCCCC
Confidence            65444  5555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=8.4e-24  Score=175.97  Aligned_cols=111  Identities=22%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             cCCCCcEEeccCCcccccCCCCcc--hhhcccccccccccchhhhhccCCCCcceecccCcccccCcccc-----cCccE
Q 048681           33 NITSLKVLDLYLNQLTRNISSSPL--LHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSH-----WHLAT  105 (266)
Q Consensus        33 ~l~~L~~L~l~~n~i~~~~~~~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~L~~  105 (266)
                      ++++|++|++++|.+++.+|. .+  ..+ ++|++|++++|..                 ..+|..+..+     ++|++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~-~~~~~~l-~~L~~L~Ls~N~l-----------------~~~~~~~~~l~~~~~~~L~~  153 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPP-PLLEATG-PDLNILNLRNVSW-----------------ATRDAWLAELQQWLKPGLKV  153 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCC-CSSSCCS-CCCSEEEEESCBC-----------------SSSSSHHHHHHTTCCTTCCE
T ss_pred             CcCCccEEEccCCcccchhHH-HHHHhcC-CCccEEEccCCCC-----------------cchhHHHHHHHHhhcCCCcE
Confidence            355555555555555544444 32  333 5555555555542                 1112223333     55666


Q ss_pred             EEccCccccccCCccccccCCCCcEEEccccccccc--CCccc--cCCCCCCEEEccCCeee
Q 048681          106 LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS--IPSSI--GDLNSLKFLDLSHNQLT  163 (266)
Q Consensus       106 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~n~~~  163 (266)
                      |++++|.+.+..+..+.. +++|++|++++|.+.+.  .+..+  ..+++|+.|++++|+++
T Consensus       154 L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          154 LSIAQAHSLNFSCEQVRV-FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             EEEESCSCCCCCTTTCCC-CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             EEeeCCCCccchHHHhcc-CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            666666665332233333 55666666666654322  12222  45566666666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=8.6e-22  Score=162.12  Aligned_cols=204  Identities=22%  Similarity=0.148  Sum_probs=143.0

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT   85 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~   85 (266)
                      .+.+++++++++++++.++ .+|..+.  ++++.|++++|.+++..+. .+..+ ++|++|++++|.+.           
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l-~~L~~L~L~~n~l~-----------   68 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLA-TLMPY-TRLTQLNLDRAELT-----------   68 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTC-TTCCEEECTTSCCC-----------
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcC-CCCCEEECCCCccC-----------
Confidence            3678889999999999988 4455443  6899999999999866555 67777 89999999988731           


Q ss_pred             ecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681           86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE  165 (266)
Q Consensus        86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  165 (266)
                            .++.. ..+++|++|++++|.++ .+|..+.. +++|+.|++++|.++...+..+..+++|+.|++++|+++ .
T Consensus        69 ------~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  138 (290)
T 1p9a_G           69 ------KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-T  138 (290)
T ss_dssp             ------EEECC-SCCTTCCEEECCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-C
T ss_pred             ------cccCC-CCCCcCCEEECCCCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-c
Confidence                  11111 35567777777777776 66655443 677777777777777555566777777777777777776 4


Q ss_pred             CCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       166 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                      ++...+..+.+++.+++..+.........  +..+++|+.|++++|.++ .+|..+....+|+.+++.+|++.
T Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          139 LPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTT--TTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cChhhcccccCCCEEECCCCcCCccCHHH--hcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            55555555666666666555444333221  123678888888888887 67777777778888888888765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=2.3e-21  Score=169.24  Aligned_cols=212  Identities=19%  Similarity=0.152  Sum_probs=127.3

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhh-hhccCCCC
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVL-VSMLHFPN   82 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~   82 (266)
                      +..+.++++|++|++++|.+.+. | .|..+++|++|++++|.+++ +   .+..+ ++|++|++++|... ..+..+++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~---~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~  107 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-L---DLSQN-TNLTYLACDSNKLTNLDVTPLTK  107 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-C---CCTTC-TTCSEEECCSSCCSCCCCTTCTT
T ss_pred             ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-E---ccccC-CCCCEEECcCCCCceeecCCCCc
Confidence            34566788888888888888754 4 57788888888888888775 2   25555 78888888887721 12444444


Q ss_pred             cceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681           83 SFTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ  161 (266)
Q Consensus        83 ~~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  161 (266)
                      +...+.+.+.+. ..+..+++|++|++++|.+++ ++  +.. +++|+.|++++|...+.+  .+..+++|+.|++++|+
T Consensus       108 L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~-l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          108 LTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VSH-NTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CTT-CTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCeecCCCCCcCCEEECCCCccce-ec--ccc-CCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            444333332221 125666777777777777763 33  222 666777777766433233  35566667777777776


Q ss_pred             eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      +++ +|   ...+.+++.+++..+.....     ....++.|+.|++++|.+++ +|  +..+++|+.|++++|++++.
T Consensus       182 l~~-l~---l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          182 ITE-LD---VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             CCC-CC---CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             cce-ec---cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence            663 33   33455555555555444332     12335666666666666663 44  55666666666666666544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=4.9e-21  Score=156.00  Aligned_cols=202  Identities=21%  Similarity=0.238  Sum_probs=103.4

Q ss_pred             CcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681           13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP   92 (266)
Q Consensus        13 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (266)
                      .++++++++.++ .+|..+.  +++++|++++|.++...+. .|..+ ++|++|++++|.+                 ..
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~l-----------------~~   75 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSK-AFHRL-TKLRLLYLNDNKL-----------------QT   75 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTT-SSSSC-TTCCEEECCSSCC-----------------SC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHH-HhcCC-CCCCEEECCCCcc-----------------Ce
Confidence            455555555555 2333332  4555556665555532222 44444 5555555555542                 11


Q ss_pred             ccc-CcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681           93 FRM-PIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA  171 (266)
Q Consensus        93 l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  171 (266)
                      ++. .+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++...+
T Consensus        76 i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~  153 (270)
T 2o6q_A           76 LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF  153 (270)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             eChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHc
Confidence            121 1234455555555555554 333333333555555555555555333444455555555555555554 3333333


Q ss_pred             ccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          172 IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       172 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      ..+.+++.+++..+.........  ...+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus       154 ~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             cCCcccceeEecCCcCcEeChhH--hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            33444444444333322222111  12367788888888888754444577788888888888876543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=9e-21  Score=171.46  Aligned_cols=70  Identities=27%  Similarity=0.316  Sum_probs=58.9

Q ss_pred             CCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeecCChhhhhc-cc
Q 048681          196 KGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGKIPPQLVEL-NA  264 (266)
Q Consensus       196 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~~p~~~~~~-~~  264 (266)
                      ....+++|++|+|++|.+++..|..|.++++|++|++++|++++.++          .|++++|.|++..|+.+.++ ++
T Consensus       489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~  568 (635)
T 4g8a_A          489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  568 (635)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTT
T ss_pred             hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCc
Confidence            34457899999999999997778889999999999999999987755          89999999998888888776 44


Q ss_pred             C
Q 048681          265 L  265 (266)
Q Consensus       265 l  265 (266)
                      |
T Consensus       569 L  569 (635)
T 4g8a_A          569 L  569 (635)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=5.5e-21  Score=155.91  Aligned_cols=185  Identities=24%  Similarity=0.221  Sum_probs=148.1

Q ss_pred             CCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681            2 NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP   81 (266)
Q Consensus         2 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~   81 (266)
                      .+++++..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+. .+..+ ++|++|++++|..        
T Consensus        54 ~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l--------  121 (272)
T 3rfs_A           54 KSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNG-VFDKL-TNLKELVLVENQL--------  121 (272)
T ss_dssp             CCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTT-TTTTC-TTCCEEECTTSCC--------
T ss_pred             ccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChh-HhcCC-cCCCEEECCCCcC--------
Confidence            4667889999999999999999853  4789999999999999999965444 56777 9999999999874        


Q ss_pred             CcceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           82 NSFTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        82 ~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                               ..++ ..+..+++|++|++++|.++ .+++..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus       122 ---------~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          122 ---------QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             ---------CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ---------CccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence                     2222 33677899999999999998 566555555899999999999998666667889999999999999


Q ss_pred             eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      ++++..+..+ .                          .+++|+.|++++|.+.+.       +++|+.++++.|.++|.
T Consensus       192 ~l~~~~~~~~-~--------------------------~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~  237 (272)
T 3rfs_A          192 QLKSVPDGVF-D--------------------------RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV  237 (272)
T ss_dssp             CCSCCCTTTT-T--------------------------TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGG
T ss_pred             cCCccCHHHH-h--------------------------CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCc
Confidence            9985433322 1                          267888899988877633       44688888888888887


Q ss_pred             CC
Q 048681          241 IP  242 (266)
Q Consensus       241 ~~  242 (266)
                      +|
T Consensus       238 ip  239 (272)
T 3rfs_A          238 VR  239 (272)
T ss_dssp             BB
T ss_pred             cc
Confidence            76

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.85  E-value=1.2e-20  Score=164.72  Aligned_cols=220  Identities=18%  Similarity=0.173  Sum_probs=152.0

Q ss_pred             cCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh-hccCCCCcceecccCcccc-cCccc
Q 048681           22 DLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV-SMLHFPNSFTITMSWRPFR-MPIQS   99 (266)
Q Consensus        22 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~~   99 (266)
                      ......+..++.+++|++|++++|.+++ +|  ++..+ ++|++|++++|.... .+..++++...+.+.+.+. ..+..
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  104 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITD-MT--GIEKL-TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTP  104 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCC-CT--TGGGC-TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTT
T ss_pred             CcCcccccChhHcCCCCEEEccCCCccc-Ch--hhccc-CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCC
Confidence            3444556678899999999999999985 44  57777 999999999998311 2444455444333333221 12667


Q ss_pred             ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhH
Q 048681          100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY  179 (266)
Q Consensus       100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~  179 (266)
                      +++|++|++++|.+++ ++  +. .+++|+.|++++|.+++ +  .+..+++|+.|++++|+..+.++   +..+.+++.
T Consensus       105 l~~L~~L~L~~N~l~~-l~--~~-~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~  174 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTK-LD--VS-QNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTT  174 (457)
T ss_dssp             CTTCCEEECCSSCCSC-CC--CT-TCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCE
T ss_pred             CCcCCEEECCCCcCCe-ec--CC-CCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc---cccCCcCCE
Confidence            7788888888887773 44  33 37788888888887764 3  26677788888888875433332   345667777


Q ss_pred             HHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-------eEEeeCCeee
Q 048681          180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------SLDVSYNNLN  252 (266)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~l~l~~n~i~  252 (266)
                      +++..+......     ...++.|+.|++++|.+++ ++  +..+++|+.|++++|++++.+.       .|++++|.+.
T Consensus       175 L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          175 LDCSFNKITELD-----VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             EECCSSCCCCCC-----CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCS
T ss_pred             EECCCCccceec-----cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCC
Confidence            777766555432     3457888899999988884 33  7888899999999998887422       8999999998


Q ss_pred             ecCChhhhhcc
Q 048681          253 GKIPPQLVELN  263 (266)
Q Consensus       253 ~~~p~~~~~~~  263 (266)
                      +..+..+.+++
T Consensus       247 ~~~~~~l~~L~  257 (457)
T 3bz5_A          247 ELDVSTLSKLT  257 (457)
T ss_dssp             CCCCTTCTTCC
T ss_pred             CcCHHHCCCCC
Confidence            76555555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=3.2e-20  Score=151.56  Aligned_cols=215  Identities=24%  Similarity=0.199  Sum_probs=144.6

Q ss_pred             EEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc-
Q 048681           15 ELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF-   93 (266)
Q Consensus        15 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l-   93 (266)
                      .++-.+..+. .+|..+.  ++|++|++++|.+++..+. .+..+ ++|++|++++|.+                 ..+ 
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~-~~~~l-~~L~~L~l~~n~l-----------------~~~~   68 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSY-SFFSF-PELQVLDLSRCEI-----------------QTIE   68 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTT-TTTTC-TTCSEEECTTCCC-----------------CEEC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHh-Hhccc-cCCcEEECCCCcC-----------------CccC
Confidence            4555666666 4566554  6899999999999976555 77777 9999999999874                 122 


Q ss_pred             ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec-CCccccc
Q 048681           94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE-IPKHLAI  172 (266)
Q Consensus        94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~  172 (266)
                      +..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+....+..+..+++|+.|++++|++++. +|..+ .
T Consensus        69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-~  146 (276)
T 2z62_A           69 DGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-S  146 (276)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-G
T ss_pred             HHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh-c
Confidence            23467788999999999999844444444 489999999999999866566788999999999999999842 34444 4


Q ss_pred             cccchhHHHhhhcccccccccCCCCcCCCCcc----EEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681          173 GCFNLEYLVESLMFTTKETSYSYKGKPLNKMY----GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------  242 (266)
Q Consensus       173 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------  242 (266)
                      .+.+++.+++..+.........+.  .++.|+    .|++++|.+++ ++.......+|+.|++++|.+++.++      
T Consensus       147 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             GCTTCCEEECCSSCCCEECGGGGH--HHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             cCCCCCEEECCCCCCCcCCHHHhh--hhhhccccceeeecCCCcccc-cCccccCCCcccEEECCCCceeecCHhHhccc
Confidence            566666666665544433221111  122233    66667766663 33323333466777777776665433      


Q ss_pred             ----eEEeeCCeeeecCC
Q 048681          243 ----SLDVSYNNLNGKIP  256 (266)
Q Consensus       243 ----~l~l~~n~i~~~~p  256 (266)
                          .|++++|++.+.-|
T Consensus       224 ~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          224 TSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CSCCEEECCSSCBCCCTT
T ss_pred             ccccEEEccCCcccccCC
Confidence                56777776665443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.6e-20  Score=155.87  Aligned_cols=198  Identities=17%  Similarity=0.225  Sum_probs=138.5

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT   85 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~   85 (266)
                      .+.++++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +  .+..+ ++|++|++++|...           
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~--~~~~l-~~L~~L~L~~n~l~-----------   98 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-A--PLKNL-TKITELELSGNPLK-----------   98 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G--GGTTC-CSCCEEECCSCCCS-----------
T ss_pred             cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-h--hHccC-CCCCEEEccCCcCC-----------
Confidence            44568889999999998884 34 688899999999999988753 3  26666 89999999988731           


Q ss_pred             ecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681           86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE  165 (266)
Q Consensus        86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  165 (266)
                            .++ .+..+++|++|++++|.++ .++. +. .+++|+.|++++|.+.. .+. +..+++|+.|++++|++++ 
T Consensus        99 ------~~~-~~~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-  165 (308)
T 1h6u_A           99 ------NVS-AIAGLQSIKTLDLTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-  165 (308)
T ss_dssp             ------CCG-GGTTCTTCCEEECTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-
T ss_pred             ------Cch-hhcCCCCCCEEECCCCCCC-Cchh-hc-CCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-
Confidence                  111 3556677888888888876 3443 33 37788888888888763 332 6777888888888887763 


Q ss_pred             CCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccC
Q 048681          166 IPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI  241 (266)
Q Consensus       166 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  241 (266)
                      ++.  +..+.+++.+++..+.......    ...++.|+.|++++|.+++ ++. +..+++|+.|++++|++++.+
T Consensus       166 ~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          166 LTP--LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred             Chh--hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCc-ccc-ccCCCCCCEEEccCCeeecCC
Confidence            333  3455666666666555444333    2346788888888888874 333 677888888888888887643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=4.5e-20  Score=166.89  Aligned_cols=127  Identities=17%  Similarity=0.227  Sum_probs=95.9

Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681          125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY  204 (266)
Q Consensus       125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~  204 (266)
                      +.+++.++++.|.+....+..+..+++++.|++++|+..+.+.+..+..+.+++.++++.+......+..+  ..+++|+
T Consensus       444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f--~~l~~L~  521 (635)
T 4g8a_A          444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQ  521 (635)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCC
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH--cCCCCCC
Confidence            44566666666666655566677778888888888875544444455677888888888876665544333  4488999


Q ss_pred             EEEccCCcccccCCccccccccCCeeecccccccccCC-----------eEEeeCCeeee
Q 048681          205 GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-----------SLDVSYNNLNG  253 (266)
Q Consensus       205 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~l~l~~n~i~~  253 (266)
                      +|+|++|.+++..+..|..+++|++|++++|++++.+|           .|++++|++.-
T Consensus       522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99999999997777788999999999999999987755           79999998753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.8e-20  Score=149.91  Aligned_cols=182  Identities=15%  Similarity=0.114  Sum_probs=134.1

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-ccccCCCCcchhhccccccccccc-chhhhhccCCCCcceecc
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-LTRNISSSPLLHLITSIEYLSTLN-YLVLVSMLHFPNSFTITM   88 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~   88 (266)
                      ++|++|++++|.++...+..|.++++|++|++++|. ++...+. .|..+ ++|++|++++ |..               
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l-~~L~~L~l~~~n~l---------------   93 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNL-SKVTHIEIRNTRNL---------------   93 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESC-TTCCEEEEEEETTC---------------
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCC-cCCcEEECCCCCCe---------------
Confidence            479999999999998777789999999999999997 7754333 67676 8899999887 553               


Q ss_pred             cCcccc-cCcccccCccEEEccCccccccCCccccccCCCCc---EEEcccc-cccccCCccccCCCCCC-EEEccCCee
Q 048681           89 SWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM---YLNLSRN-EFDGSIPSSIGDLNSLK-FLDLSHNQL  162 (266)
Q Consensus        89 ~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~n~~  162 (266)
                        ..++ ..+..+++|++|++++|.++ .+|. +. .+++|+   .|++++| .+....+..+..+++|+ .|++++|++
T Consensus        94 --~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C           94 --TYIDPDALKELPLLKFLGIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             --CEECTTSEECCTTCCEEEEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             --eEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence              2222 34667788999999998887 4665 33 367777   8999998 88755556688888899 999998888


Q ss_pred             eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCc-ccccCCcccccc-ccCCeeeccccccccc
Q 048681          163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNK-LVGEIPPQIGKL-TRVRALNLSHNNLTGV  240 (266)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~l~~n~l~~~  240 (266)
                      + .+|...+.                           .++|+.|++++|. +++..+..|..+ ++|+.|++++|++++.
T Consensus       169 ~-~i~~~~~~---------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l  220 (239)
T 2xwt_C          169 T-SVQGYAFN---------------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL  220 (239)
T ss_dssp             C-EECTTTTT---------------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred             c-ccCHhhcC---------------------------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence            7 55544431                           2567788888884 774445566777 7788887777777754


Q ss_pred             CC
Q 048681          241 IP  242 (266)
Q Consensus       241 ~~  242 (266)
                      ++
T Consensus       221 ~~  222 (239)
T 2xwt_C          221 PS  222 (239)
T ss_dssp             CC
T ss_pred             Ch
Confidence            33

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=7.6e-20  Score=159.55  Aligned_cols=54  Identities=30%  Similarity=0.399  Sum_probs=28.7

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ++|++|++++|.+.+ +| .|+++++|++|++++|.+++ +|. .    +.+|++|++++|.
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~-~----~~~L~~L~L~~n~  184 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD-L----PPSLEFIAAGNNQ  184 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC-C----CTTCCEEECCSSC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC-C----cccccEEECcCCc
Confidence            456666666666553 34 35666666666666666553 332 1    1355555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=1.1e-19  Score=146.32  Aligned_cols=181  Identities=20%  Similarity=0.221  Sum_probs=134.4

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      ...++++++++.+. .+|..+.  +++++|++++|.+++..+. .+..+ ++|++|++++|.+..               
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~---------------   73 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDA-TFRGL-TKLTWLNLDYNQLQT---------------   73 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTT-TTTTC-TTCCEEECTTSCCCC---------------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHh-HhcCc-ccCCEEECCCCcCCc---------------
Confidence            45678888888888 4555554  5888888888888865555 67776 888888888876311               


Q ss_pred             cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681           91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL  170 (266)
Q Consensus        91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  170 (266)
                       ..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|++++ ++...
T Consensus        74 -~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~  150 (251)
T 3m19_A           74 -LSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGA  150 (251)
T ss_dssp             -CCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred             -cCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHH
Confidence             11233567788999999999887 5555555558899999999998885555567788899999999998874 44322


Q ss_pred             cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      +                          ..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus       151 ~--------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          151 F--------------------------DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             T--------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             c--------------------------CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            2                          1267888999999988865556788888899999999988866

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=9.9e-20  Score=151.09  Aligned_cols=182  Identities=20%  Similarity=0.282  Sum_probs=141.1

Q ss_pred             CCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681            2 NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP   81 (266)
Q Consensus         2 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~   81 (266)
                      ..++++..+++|++|++++|.+....+  +..+++|++|++++|.+++ ++  .+..+ ++|++|++++|..        
T Consensus        54 ~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l-~~L~~L~l~~n~l--------  119 (308)
T 1h6u_A           54 TTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS--AIAGL-QSIKTLDLTSTQI--------  119 (308)
T ss_dssp             CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG--GGTTC-TTCCEEECTTSCC--------
T ss_pred             cCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch--hhcCC-CCCCEEECCCCCC--------
Confidence            456788999999999999999996544  9999999999999999985 32  57777 9999999999874        


Q ss_pred             CcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681           82 NSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ  161 (266)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  161 (266)
                               ..++. +..+++|++|++++|.++ .++. +. .+++|+.|++++|.+.. ++. +..+++|+.|++++|+
T Consensus       120 ---------~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          120 ---------TDVTP-LAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             ---------CCCGG-GTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             ---------CCchh-hcCCCCCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence                     11222 567788999999999887 4443 33 37889999999998873 333 7788899999999998


Q ss_pred             eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcc
Q 048681          162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ  220 (266)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  220 (266)
                      +++ ++.  +..+.+++.+++..+.......    ...+++|+.|++++|.++ ..|..
T Consensus       185 l~~-~~~--l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i~-~~~~~  235 (308)
T 1h6u_A          185 ISD-ISP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTIT-NQPVF  235 (308)
T ss_dssp             CCC-CGG--GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEEE-CCCEE
T ss_pred             cCc-Chh--hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCeee-cCCee
Confidence            874 433  4667788888888777666553    345899999999999998 44543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=7.8e-21  Score=157.86  Aligned_cols=183  Identities=21%  Similarity=0.199  Sum_probs=109.7

Q ss_pred             CCCcEEECCCccCccCCChhh--hcCCCCcEEeccCCcccccCCC---CcchhhcccccccccccchhhhhccCCCCcce
Q 048681           11 RNLQELHMGANDLRGTLPWCL--ENITSLKVLDLYLNQLTRNISS---SPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT   85 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~---~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~   85 (266)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+.   ..+..+ ++|++|++++|.+            
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l------------  157 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK-PGLKVLSIAQAHS------------  157 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC-SCCCEEEEECCSS------------
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc-cCCCEEEeeCCCc------------
Confidence            446666666666666666655  5666666666666666543331   022223 5666666666553            


Q ss_pred             ecccCcc-cccCcccccCccEEEccCcccccc--CC-ccccccCCCCcEEEcccccccccCCc----cccCCCCCCEEEc
Q 048681           86 ITMSWRP-FRMPIQSHWHLATLYVSKKFFQGN--IP-LEIGVYFPRLMYLNLSRNEFDGSIPS----SIGDLNSLKFLDL  157 (266)
Q Consensus        86 ~~~~~~~-l~~~~~~~~~L~~L~l~~n~~~~~--~~-~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l  157 (266)
                           .. .+..+..+++|++|++++|++.+.  ++ ......+++|++|++++|.++ .++.    .+..+++|++|++
T Consensus       158 -----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~L  231 (310)
T 4glp_A          158 -----PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDL  231 (310)
T ss_dssp             -----CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEEC
T ss_pred             -----chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEEC
Confidence                 22 235567788999999999987532  22 222234788999999999886 3333    2467789999999


Q ss_pred             cCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccc
Q 048681          158 SHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNL  237 (266)
Q Consensus       158 ~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  237 (266)
                      ++|++++..|+.+.. +.                       .++.|+.|++++|.++ .+|..+.  ++|++|++++|++
T Consensus       232 s~N~l~~~~p~~~~~-~~-----------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l  284 (310)
T 4glp_A          232 SHNSLRATVNPSAPR-CM-----------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL  284 (310)
T ss_dssp             TTSCCCCCCCSCCSS-CC-----------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred             CCCCCCccchhhHHh-cc-----------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence            999998655655531 10                       0245555555555555 4444332  4555555555555


Q ss_pred             cc
Q 048681          238 TG  239 (266)
Q Consensus       238 ~~  239 (266)
                      ++
T Consensus       285 ~~  286 (310)
T 4glp_A          285 NR  286 (310)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.83  E-value=2e-20  Score=155.85  Aligned_cols=194  Identities=24%  Similarity=0.173  Sum_probs=120.2

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhh-ccCCCCc
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVS-MLHFPNS   83 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~~   83 (266)
                      +.|.++++|++|++++|.+.+..+  |..+++|++|++++|.+++      +... ++|++|++++|.+... ...++.+
T Consensus        52 ~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~------l~~~-~~L~~L~l~~n~l~~~~~~~~~~L  122 (317)
T 3o53_A           52 ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVG-PSIETLHAANNNISRVSCSRGQGK  122 (317)
T ss_dssp             HHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE------EEEC-TTCCEEECCSSCCSEEEECCCSSC
T ss_pred             HHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc------ccCC-CCcCEEECCCCccCCcCccccCCC
Confidence            468899999999999999986654  8999999999999999984      3333 8999999999883221 2223333


Q ss_pred             ceecccCcc---c-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681           84 FTITMSWRP---F-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH  159 (266)
Q Consensus        84 ~~~~~~~~~---l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  159 (266)
                      .....+.+.   + +..+..+++|++|++++|.+++..+..+...+++|++|++++|.+... +. ...+++|+.|++++
T Consensus       123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSS  200 (317)
T ss_dssp             EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCS
T ss_pred             CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCC
Confidence            333322222   2 234555666777777776666444444443356677777777766532 22 22466677777777


Q ss_pred             CeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          160 NQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       160 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                      |++++ +++.+ ..                          ++.|+.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus       201 N~l~~-l~~~~-~~--------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          201 NKLAF-MGPEF-QS--------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             SCCCE-ECGGG-GG--------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             CcCCc-chhhh-cc--------------------------cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            76663 33332 23                          455555555555555 34544555555555555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=5.8e-21  Score=166.63  Aligned_cols=50  Identities=34%  Similarity=0.330  Sum_probs=22.6

Q ss_pred             CCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------eEEeeCCeeee
Q 048681          200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------SLDVSYNNLNG  253 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~l~l~~n~i~~  253 (266)
                      ++.|++|++++|.++ .+|..   .++|+.|++++|.+++.++      .|++++|.+.+
T Consensus       236 l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          236 LPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred             CCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccCc
Confidence            444455555544444 23321   2344455555554443211      45555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=4.5e-20  Score=162.38  Aligned_cols=195  Identities=23%  Similarity=0.156  Sum_probs=127.4

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhh-ccCCCC
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVS-MLHFPN   82 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~   82 (266)
                      +..|..+++|++|++++|.+.+..|  |..+++|++|++++|.+++.      ... ++|+.|++++|.+... ...++.
T Consensus        51 ~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------~~~-~~L~~L~L~~N~l~~~~~~~l~~  121 (487)
T 3oja_A           51 AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------LVG-PSIETLHAANNNISRVSCSRGQG  121 (487)
T ss_dssp             GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE------EEC-TTCCEEECCSSCCCCEEECCCSS
T ss_pred             HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC------CCC-CCcCEEECcCCcCCCCCccccCC
Confidence            4578899999999999999987665  89999999999999999843      233 8999999999983221 122333


Q ss_pred             cceecccCcc----cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEcc
Q 048681           83 SFTITMSWRP----FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLS  158 (266)
Q Consensus        83 ~~~~~~~~~~----l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  158 (266)
                      +...+.+.+.    .|..+..+++|++|++++|.+++..|..+...+++|+.|++++|.+++. +. ...+++|+.|+++
T Consensus       122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls  199 (487)
T 3oja_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS  199 (487)
T ss_dssp             CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECC
Confidence            3333222222    1334555666666666666666544544443356666666666666532 21 2245666666666


Q ss_pred             CCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          159 HNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       159 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                      +|++++ +|+.+                           ..++.|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus       200 ~N~l~~-~~~~~---------------------------~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          200 SNKLAF-MGPEF---------------------------QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             SSCCCE-ECGGG---------------------------GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCCCC-CCHhH---------------------------cCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            666653 32222                           23577788888888877 46766777778888888888776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1.9e-21  Score=163.13  Aligned_cols=227  Identities=16%  Similarity=0.175  Sum_probs=132.9

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCccccc-CCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRN-ISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      ++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++. .+..+ ++|++|++++|.....             
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~-~~L~~L~L~~~~l~~~-------------  133 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQC-SKLQNLSLEGLRLSDP-------------  133 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTB-CCCSEEECTTCBCCHH-------------
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhC-CCCCEEeCcCcccCHH-------------
Confidence            6777777777777755544 45677777777777777643 333 34444 7777777777752111             


Q ss_pred             CcccccCcccccCccEEEccCc-ccccc-CCccccccCCCCcEEEcccc-ccccc-CCccccCCC-CCCEEEccCCe--e
Q 048681           90 WRPFRMPIQSHWHLATLYVSKK-FFQGN-IPLEIGVYFPRLMYLNLSRN-EFDGS-IPSSIGDLN-SLKFLDLSHNQ--L  162 (266)
Q Consensus        90 ~~~l~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~n~--~  162 (266)
                         .+..+..+++|++|++++| .+++. ++..+.. +++|++|++++| .++.. ++..+..++ +|+.|++++|.  +
T Consensus       134 ---~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~  209 (336)
T 2ast_B          134 ---IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL  209 (336)
T ss_dssp             ---HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred             ---HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence               1222334555666666665 34431 2222222 556666666666 55422 334445555 66666666652  2


Q ss_pred             ee-cCCccccccccchhHHHhhhccc-ccccccCCCCcCCCCccEEEccCCc-ccccCCccccccccCCeeecccccccc
Q 048681          163 TG-EIPKHLAIGCFNLEYLVESLMFT-TKETSYSYKGKPLNKMYGIDLSCNK-LVGEIPPQIGKLTRVRALNLSHNNLTG  239 (266)
Q Consensus       163 ~~-~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~  239 (266)
                      ++ .++. .+..+++++.+++..+.. .+....  ....+++|+.|++++|. +.......+..+++|+.|++++| ++.
T Consensus       210 ~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          210 QKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQ--EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             CHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGG--GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             CHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHH--HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence            21 1221 223455555555555441 111111  11236899999999994 44333335788999999999998 553


Q ss_pred             --------cCCeEEeeCCeeeecCChhhhh
Q 048681          240 --------VIPSLDVSYNNLNGKIPPQLVE  261 (266)
Q Consensus       240 --------~~~~l~l~~n~i~~~~p~~~~~  261 (266)
                              ..|.|++++|.+++..|..+++
T Consensus       286 ~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          286 GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HHHHHHHhhCcceEEecccCccccCCcccc
Confidence                    2668999999999988887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=5.1e-19  Score=159.35  Aligned_cols=217  Identities=23%  Similarity=0.195  Sum_probs=116.4

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec---
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT---   87 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~---   87 (266)
                      ++|++|++++|.++. +|.   .+++|++|++++|.++ .+|.    . +++|++|++++|.+..-...++++..+.   
T Consensus        61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~-l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~  130 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----L-PPGLLELSIFSNPLTHLPALPSGLCKLWIFG  130 (622)
T ss_dssp             TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----C-CTTCCEEEECSCCCCCCCCCCTTCCEEECCS
T ss_pred             CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----C-CCCCCEEECcCCcCCCCCCCCCCcCEEECCC
Confidence            567777777777763 333   4567777777777766 3443    2 2677777777766221111222222222   


Q ss_pred             ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC
Q 048681           88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP  167 (266)
Q Consensus        88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  167 (266)
                      +.+..+|..   +++|++|++++|.++ .+|..    ..+|+.|++++|.++ .+|   ..+++|+.|++++|+++ .+|
T Consensus       131 N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~-~l~  197 (622)
T 3g06_A          131 NQLTSLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLA-SLP  197 (622)
T ss_dssp             SCCSCCCCC---CTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCC
T ss_pred             CCCCcCCCC---CCCCCEEECcCCcCC-CcCCc----cCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCC-CCC
Confidence            222333332   366777777777666 34431    345666666666665 333   34466777777777776 343


Q ss_pred             ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-----
Q 048681          168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-----  242 (266)
Q Consensus       168 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----  242 (266)
                      ..    ..+++.+++..+....+..      .+++|+.|++++|.++ .+|   ..+++|+.|++++|++++.++     
T Consensus       198 ~~----~~~L~~L~L~~N~l~~l~~------~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L  263 (622)
T 3g06_A          198 TL----PSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGL  263 (622)
T ss_dssp             CC----CTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             Cc----cchhhEEECcCCcccccCC------CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCcccccC
Confidence            32    2344444444443332221      1355666666666665 344   334556666666666654322     


Q ss_pred             -eEEeeCCeeeecCChhhhhcccC
Q 048681          243 -SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       243 -~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                       .|++++|.|+ .+|.++.++++|
T Consensus       264 ~~L~Ls~N~L~-~lp~~l~~l~~L  286 (622)
T 3g06_A          264 LSLSVYRNQLT-RLPESLIHLSSE  286 (622)
T ss_dssp             CEEECCSSCCC-SCCGGGGGSCTT
T ss_pred             cEEeCCCCCCC-cCCHHHhhcccc
Confidence             5666666665 556666655554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.3e-19  Score=141.84  Aligned_cols=177  Identities=22%  Similarity=0.256  Sum_probs=102.3

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      +.++.+++.+. .+|..+  .++|++|++++|.+++ ++...+..                                   
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~-----------------------------------   50 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKS-LPNGVFDE-----------------------------------   50 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCC-CCTTTTTT-----------------------------------
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCc-CChhhhcc-----------------------------------
Confidence            45667777666 334333  3577788888887764 33213333                                   


Q ss_pred             ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccccc
Q 048681           94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG  173 (266)
Q Consensus        94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  173 (266)
                            +++|++|++++|+++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|++++ ++...+  
T Consensus        51 ------l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~--  120 (208)
T 2o6s_A           51 ------LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVF--  120 (208)
T ss_dssp             ------CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT--
T ss_pred             ------cccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHh--
Confidence                  345556666666665 4444433335666666666666654334445666666666666666653 322211  


Q ss_pred             ccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC---eEEeeCCe
Q 048681          174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---SLDVSYNN  250 (266)
Q Consensus       174 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~l~l~~n~  250 (266)
                                              ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|   +|++++|.
T Consensus       121 ------------------------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          121 ------------------------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK  176 (208)
T ss_dssp             ------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHH
T ss_pred             ------------------------ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHh
Confidence                                    124566666666666664333445666666667776666666555   56666666


Q ss_pred             eeecCChhhhhcc
Q 048681          251 LNGKIPPQLVELN  263 (266)
Q Consensus       251 i~~~~p~~~~~~~  263 (266)
                      ++|.+|++++++.
T Consensus       177 ~~g~ip~~~~~l~  189 (208)
T 2o6s_A          177 HSGVVRNSAGSVA  189 (208)
T ss_dssp             CTTTBBCTTSSBC
T ss_pred             CCceeeccCcccc
Confidence            7677776666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=4.6e-19  Score=142.78  Aligned_cols=171  Identities=21%  Similarity=0.190  Sum_probs=135.5

Q ss_pred             CCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCcccc
Q 048681           35 TSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ  114 (266)
Q Consensus        35 ~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~  114 (266)
                      .+.++++++++.++ .+|. .+   ++.++.|++++|.+...                .+..+..+++|++|++++|.++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~-~~---~~~l~~L~L~~n~l~~~----------------~~~~~~~l~~L~~L~L~~n~l~   72 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPS-GI---PADTEKLDLQSTGLATL----------------SDATFRGLTKLTWLNLDYNQLQ   72 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCS-CC---CTTCCEEECTTSCCCCC----------------CTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCeEEecCCCCcc-ccCC-CC---CCCCCEEEccCCCcCcc----------------CHhHhcCcccCCEEECCCCcCC
Confidence            46789999999998 5776 43   36889999998874111                1234677889999999999998


Q ss_pred             ccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccC
Q 048681          115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYS  194 (266)
Q Consensus       115 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  194 (266)
                      + +++..+..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++...+                       
T Consensus        73 ~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~-----------------------  127 (251)
T 3m19_A           73 T-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVF-----------------------  127 (251)
T ss_dssp             C-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-----------------------
T ss_pred             c-cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHh-----------------------
Confidence            4 44444444889999999999998666677889999999999999998 4444332                       


Q ss_pred             CCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------eEEeeCCeeeec
Q 048681          195 YKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------SLDVSYNNLNGK  254 (266)
Q Consensus       195 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~l~l~~n~i~~~  254 (266)
                         ..++.|+.|++++|.+++..+..|..+++|++|++++|.+++.++          .|++++|.+.+.
T Consensus       128 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          128 ---DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ---ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence               136899999999999996555578999999999999999997755          899999999865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=3.7e-19  Score=160.29  Aligned_cols=221  Identities=21%  Similarity=0.205  Sum_probs=134.1

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM   88 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~   88 (266)
                      .+++|++|++++|.++. +|.   .+++|++|++++|.+++ +|.     .+++|+.|++++|.+..-...++++..++.
T Consensus        79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~-----~l~~L~~L~L~~N~l~~lp~~l~~L~~L~L  148 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA-----LPSGLCKLWIFGNQLTSLPVLPPGLQELSV  148 (622)
T ss_dssp             CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred             cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC-----CCCCcCEEECCCCCCCcCCCCCCCCCEEEC
Confidence            57889999999999884 444   67889999999998874 443     237788888888873222222344433333


Q ss_pred             cCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681           89 SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK  168 (266)
Q Consensus        89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  168 (266)
                      +.+.+..--....+|+.|++++|.++ .+|    ..+++|+.|++++|.+. .+|..   .++|+.|++++|.++ .+|.
T Consensus       149 s~N~l~~l~~~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~-~l~~  218 (622)
T 3g06_A          149 SDNQLASLPALPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPA  218 (622)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             cCCcCCCcCCccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCccc-ccCC
Confidence            33332221123356777777777776 455    22567777777777776 33432   356777777777666 3443


Q ss_pred             cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------
Q 048681          169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------  242 (266)
Q Consensus       169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------  242 (266)
                      .    +.+++.++++.+....++      ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++..++      
T Consensus       219 ~----~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~  284 (622)
T 3g06_A          219 L----PSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLS  284 (622)
T ss_dssp             C----CTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSC
T ss_pred             C----CCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhcc
Confidence            2    245555555555433322      23466777777777766 4554   45667777777777663322      


Q ss_pred             ---eEEeeCCeeeecCChhhhhcc
Q 048681          243 ---SLDVSYNNLNGKIPPQLVELN  263 (266)
Q Consensus       243 ---~l~l~~n~i~~~~p~~~~~~~  263 (266)
                         .|++++|.+.+..|..+.++.
T Consensus       285 ~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          285 SETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             ccCEEEecCCCCCCcCHHHHHhcc
Confidence               577777777766666665443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=5.1e-19  Score=144.05  Aligned_cols=183  Identities=21%  Similarity=0.215  Sum_probs=139.4

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      +++++|++++|.+....+..|.++++|++|++++|.++. ++...+..+ ++|++|++++|..                 
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l-~~L~~L~l~~n~l-----------------   97 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKEL-KNLETLWVTDNKL-----------------   97 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSC-TTCCEEECCSSCC-----------------
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCC-CCCCEEECCCCcC-----------------
Confidence            579999999999998888899999999999999999984 555245566 9999999999874                 


Q ss_pred             cccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681           91 RPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH  169 (266)
Q Consensus        91 ~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  169 (266)
                      ..++ ..+..+++|++|++++|.++ .+++..+..+++|++|++++|.+....+..+..+++|+.|++++|+++ .++..
T Consensus        98 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~  175 (270)
T 2o6q_A           98 QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEG  175 (270)
T ss_dssp             CCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTT
T ss_pred             CcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChh
Confidence            1222 23566788888999888887 455444444888999999988887555556778888999999888887 45555


Q ss_pred             ccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccccc
Q 048681          170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE  216 (266)
Q Consensus       170 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  216 (266)
                      .+..+.+++.+++..+.........  ...++.|+.|++++|.+...
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          176 AFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCS
T ss_pred             HhccCCCcCEEECCCCcCCcCCHHH--hccccCCCEEEecCCCeeCC
Confidence            5567788888888777555443322  23478999999999998643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=5.5e-19  Score=145.33  Aligned_cols=178  Identities=23%  Similarity=0.103  Sum_probs=142.6

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      ++++.|++++|.+.+..+..|.++++|++|++++|.+++. +.  ...+ ++|++|++++|..                 
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~--~~~l-~~L~~L~Ls~N~l-----------------   89 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV--DGTL-PVLGTLDLSHNQL-----------------   89 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC--CSCC-TTCCEEECCSSCC-----------------
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC--CCCC-CcCCEEECCCCcC-----------------
Confidence            6899999999999988889999999999999999999853 33  2445 8999999999874                 


Q ss_pred             cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681           91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL  170 (266)
Q Consensus        91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  170 (266)
                      ..+|..+..+++|++|++++|+++ .+++..+..+++|+.|++++|.+....+..+..+++|+.|++++|+++ .+|...
T Consensus        90 ~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~  167 (290)
T 1p9a_G           90 QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL  167 (290)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTT
T ss_pred             CcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHH
Confidence            345556677888999999999988 556554455889999999999988655666778899999999999988 677777


Q ss_pred             cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccc
Q 048681          171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV  214 (266)
Q Consensus       171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~  214 (266)
                      +..+.+++.+++..+....+.   ........|+.+++++|.+.
T Consensus       168 ~~~l~~L~~L~L~~N~l~~ip---~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          168 LNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC---TTTTTTCCCSEEECCSCCBC
T ss_pred             hcCcCCCCEEECCCCcCCccC---hhhcccccCCeEEeCCCCcc
Confidence            777888888888777655433   33334578999999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=3.8e-21  Score=164.48  Aligned_cols=239  Identities=15%  Similarity=0.155  Sum_probs=145.8

Q ss_pred             CccccCCCCCcEEECCCccCccCCChh----hhcCCCCcEEeccCCcc---cccCCCCcc-------hhhcccccccccc
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWC----LENITSLKVLDLYLNQL---TRNISSSPL-------LHLITSIEYLSTL   69 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~i---~~~~~~~~~-------~~~~~~L~~L~~~   69 (266)
                      +..+.++++|++|++++|.+....+..    |..+++|++|++++|.+   ++.+|. ++       ..+ ++|++|+++
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~-~~~~l~~~l~~~-~~L~~L~Ls  102 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE-ALRLLLQALLKC-PKLHTVRLS  102 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH-HHHHHHHHHTTC-TTCCEEECC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhH-HHHHHHHHHhhC-CcccEEECC
Confidence            345667888999999999888664444    55789999999998643   334444 33       344 888889988


Q ss_pred             cchhhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCcccccc---C---------CCCcEEEccccc
Q 048681           70 NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY---F---------PRLMYLNLSRNE  137 (266)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~---------~~L~~L~l~~~~  137 (266)
                      +|.....            ....++..+..+++|++|++++|.+++..+..+...   +         ++|++|++++|.
T Consensus       103 ~n~l~~~------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A          103 DNAFGPT------------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             SCCCCTT------------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             CCcCCHH------------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            8873210            001234445566677777777777653322222221   2         677777777777


Q ss_pred             cc-ccCC---ccccCCCCCCEEEccCCeeeec----CCccccccccchhHHHhhhcccccc--cccCCCCcCCCCccEEE
Q 048681          138 FD-GSIP---SSIGDLNSLKFLDLSHNQLTGE----IPKHLAIGCFNLEYLVESLMFTTKE--TSYSYKGKPLNKMYGID  207 (266)
Q Consensus       138 ~~-~~~~---~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~L~~L~  207 (266)
                      +. ..++   ..+..+++|+.|++++|+++..    +.+..+..+.+++.|+++.+.....  ...+.....+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            65 2222   3455666777777777766521    1111223455555555555443211  11112223467888999


Q ss_pred             ccCCccccc----CCccccc--cccCCeeecccccccc----cC--------C---eEEeeCCeeeecCC
Q 048681          208 LSCNKLVGE----IPPQIGK--LTRVRALNLSHNNLTG----VI--------P---SLDVSYNNLNGKIP  256 (266)
Q Consensus       208 L~~n~i~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~--------~---~l~l~~n~i~~~~p  256 (266)
                      |++|.+++.    ++..+..  +++|++|++++|.+++    .+        +   .|++++|.+.+..|
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999888754    4555533  7889999999988886    11        2   88889998886553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=3.2e-19  Score=142.58  Aligned_cols=179  Identities=17%  Similarity=0.203  Sum_probs=140.3

Q ss_pred             cccCCCCCcEEECCCcc-CccCCChhhhcCCCCcEEeccC-CcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681            6 GLFRLRNLQELHMGAND-LRGTLPWCLENITSLKVLDLYL-NQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS   83 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~   83 (266)
                      .|.++++|++|++++|. ++.+.+.+|.++++|++|++++ |.++...+. .|..+ ++|++|++++|..          
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l-~~L~~L~l~~n~l----------  117 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKEL-PLLKFLGIFNTGL----------  117 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-SEECC-TTCCEEEEEEECC----------
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCC-CCCCEEeCCCCCC----------
Confidence            58899999999999997 8877788999999999999998 999854444 67777 9999999999874          


Q ss_pred             ceecccCcccccCcccccCcc---EEEccCc-cccccCCccccccCCCCc-EEEcccccccccCCccccCCCCCCEEEcc
Q 048681           84 FTITMSWRPFRMPIQSHWHLA---TLYVSKK-FFQGNIPLEIGVYFPRLM-YLNLSRNEFDGSIPSSIGDLNSLKFLDLS  158 (266)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  158 (266)
                             ..+|. +..+++|+   +|++++| .++ .+++..+..+++|+ .|++++|.+. .+|......++|+.|+++
T Consensus       118 -------~~lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          118 -------KMFPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             -------CSCCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             -------ccccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence                   22333 45566666   9999999 887 56665555588999 9999999998 555443344899999999


Q ss_pred             CCe-eeecCCccccccccchhHHHhhhcccccccccCCCCcCC-CCccEEEccCCcccccCCccccccccCCeeeccccc
Q 048681          159 HNQ-LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPL-NKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNN  236 (266)
Q Consensus       159 ~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  236 (266)
                      +|+ ++ .++...+.                          .+ +.|+.|++++|.++ .+|..  .+++|+.|++.++.
T Consensus       188 ~n~~l~-~i~~~~~~--------------------------~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLT-VIDKDAFG--------------------------GVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCC-EECTTTTT--------------------------TCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             CCCCcc-cCCHHHhh--------------------------ccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            995 87 44433321                          25 78999999999998 56653  67889999988763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=3e-20  Score=157.62  Aligned_cols=236  Identities=16%  Similarity=0.132  Sum_probs=137.3

Q ss_pred             CCCCCcEEECCCccCccCCC----hhhhcCC-CCcEEeccCCcccccCCCCcchhh----cccccccccccchhhhhccC
Q 048681            9 RLRNLQELHMGANDLRGTLP----WCLENIT-SLKVLDLYLNQLTRNISSSPLLHL----ITSIEYLSTLNYLVLVSMLH   79 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~----~~~L~~L~~~~~~~~~~~~~   79 (266)
                      ..++|++|++++|.+....+    +.|..++ +|++|++++|.+++..+. .+...    +++|++|++++|....... 
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-   97 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSS-   97 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCH-
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHH-
Confidence            34459999999999997776    7778888 899999999999875554 55553    3789999999998421110 


Q ss_pred             CCCcceecccCcccccCcccc-cCccEEEccCccccccCCcccccc----CCCCcEEEccccccccc----CCccccCCC
Q 048681           80 FPNSFTITMSWRPFRMPIQSH-WHLATLYVSKKFFQGNIPLEIGVY----FPRLMYLNLSRNEFDGS----IPSSIGDLN  150 (266)
Q Consensus        80 ~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~  150 (266)
                                 ..+...+... ++|++|++++|.+++..+..+...    .++|++|++++|.+...    ++..+...+
T Consensus        98 -----------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~  166 (362)
T 3goz_A           98 -----------DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP  166 (362)
T ss_dssp             -----------HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred             -----------HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence                       0000112222 456666666666653322222211    13666666666666532    222333343


Q ss_pred             -CCCEEEccCCeeeecCCcccc---ccc-cchhHHHhhhccccccccc--CCCCcC-CCCccEEEccCCcccccCC----
Q 048681          151 -SLKFLDLSHNQLTGEIPKHLA---IGC-FNLEYLVESLMFTTKETSY--SYKGKP-LNKMYGIDLSCNKLVGEIP----  218 (266)
Q Consensus       151 -~L~~L~l~~n~~~~~~~~~~~---~~~-~~l~~l~~~~~~~~~~~~~--~~~~~~-~~~L~~L~L~~n~i~~~~~----  218 (266)
                       +|+.|++++|++++..+..+.   ..+ .+++.++++.+........  ...... .++|+.|++++|.+++..+    
T Consensus       167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  246 (362)
T 3goz_A          167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK  246 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred             ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence             666666666666533332221   122 3555555555544432211  111111 3578888888888875433    


Q ss_pred             ccccccccCCeeeccccccccc-----------------CCeEEeeCCeeeecCCh
Q 048681          219 PQIGKLTRVRALNLSHNNLTGV-----------------IPSLDVSYNNLNGKIPP  257 (266)
Q Consensus       219 ~~~~~l~~L~~L~l~~n~l~~~-----------------~~~l~l~~n~i~~~~p~  257 (266)
                      ..+..+++|+.|++++|.+.+.                 +.+||+++|.+.+..|.
T Consensus       247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence            2346677888888888874322                 11688888887755333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=9.6e-20  Score=151.28  Aligned_cols=215  Identities=21%  Similarity=0.177  Sum_probs=147.2

Q ss_pred             CCCCCcEEECCCccCccCCCh---hhhcCCCCcEEeccCCcccccCCCCcc--hhhcccccccccccchhhhhccCCCCc
Q 048681            9 RLRNLQELHMGANDLRGTLPW---CLENITSLKVLDLYLNQLTRNISSSPL--LHLITSIEYLSTLNYLVLVSMLHFPNS   83 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~n~i~~~~~~~~~--~~~~~~L~~L~~~~~~~~~~~~~~~~~   83 (266)
                      ....++.+.+.++.+....-.   .+..+++|++|++++|.+++..|. .+  ..+ ++|++|++++|.+......    
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~-~~L~~L~Ls~n~i~~~~~~----  135 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-LPLEATG-LALSSLRLRNVSWATGRSW----  135 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-CSSSCCC-BCCSSCEEESCCCSSTTSS----
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-hhhhccC-CCCCEEEeecccccchhhh----
Confidence            344567778877776522111   122457799999999999887777 55  555 8999999998874221100    


Q ss_pred             ceecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccccc--C--CccccCCCCCCEEEcc
Q 048681           84 FTITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGS--I--PSSIGDLNSLKFLDLS  158 (266)
Q Consensus        84 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~  158 (266)
                               ++ ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+.  +  +..+..+++|+.|+++
T Consensus       136 ---------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          136 ---------LAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR  205 (310)
T ss_dssp             ---------HHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred             ---------hHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence                     00 1234577899999999999744434444 488999999999986531  2  2334678899999999


Q ss_pred             CCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcccccc---ccCCeeecccc
Q 048681          159 HNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKL---TRVRALNLSHN  235 (266)
Q Consensus       159 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~l~~n  235 (266)
                      +|+++ .++....    .+                   ...++.|++|++++|.+++..|..+..+   ++|++|++++|
T Consensus       206 ~N~l~-~l~~~~~----~l-------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N  261 (310)
T 4glp_A          206 NTGME-TPTGVCA----AL-------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA  261 (310)
T ss_dssp             SSCCC-CHHHHHH----HH-------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred             CCCCC-chHHHHH----HH-------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence            99886 2322110    00                   0126899999999999997778777766   69999999999


Q ss_pred             cccccCC-------eEEeeCCeeeecCChhhhhcccC
Q 048681          236 NLTGVIP-------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       236 ~l~~~~~-------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      ++++.++       .|++++|.+++ +|. +..+++|
T Consensus       262 ~l~~lp~~~~~~L~~L~Ls~N~l~~-~~~-~~~l~~L  296 (310)
T 4glp_A          262 GLEQVPKGLPAKLRVLDLSSNRLNR-APQ-PDELPEV  296 (310)
T ss_dssp             CCCSCCSCCCSCCSCEECCSCCCCS-CCC-TTSCCCC
T ss_pred             CCCchhhhhcCCCCEEECCCCcCCC-Cch-hhhCCCc
Confidence            9995543       89999999995 343 4555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.7e-18  Score=142.47  Aligned_cols=176  Identities=20%  Similarity=0.275  Sum_probs=135.0

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcc
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSF   84 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~   84 (266)
                      ..+..+++|++|++++|.+... + .+..+++|++|++++|.+++..   .+..+ ++|++|++++|...          
T Consensus        40 ~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~---~l~~l-~~L~~L~l~~n~l~----------  103 (291)
T 1h6t_A           40 VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK---PLANL-KNLGWLFLDENKVK----------  103 (291)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG---GGTTC-TTCCEEECCSSCCC----------
T ss_pred             cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc---ccccC-CCCCEEECCCCcCC----------
Confidence            3456788999999999999854 3 4889999999999999998532   26666 89999999988731          


Q ss_pred             eecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           85 TITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                             .++ .+..+++|++|++++|+++ .++ .+.. +++|+.|++++|.+...  ..+..+++|+.|++++|++++
T Consensus       104 -------~~~-~l~~l~~L~~L~L~~n~i~-~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          104 -------DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             -------CGG-GGTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             -------CCh-hhccCCCCCEEECCCCcCC-CCh-hhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence                   112 2567788999999999987 343 4444 88999999999998743  677889999999999999874


Q ss_pred             cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          165 EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       165 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                       ++. +                           ..++.|+.|++++|.++ .++. +..+++|+.|++++|+++..
T Consensus       171 -~~~-l---------------------------~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          171 -IVP-L---------------------------AGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             -CGG-G---------------------------TTCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             -chh-h---------------------------cCCCccCEEECCCCcCC-CChh-hccCCCCCEEECcCCcccCC
Confidence             332 2                           12678888888888887 3443 77888888888888887754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.2e-18  Score=155.29  Aligned_cols=185  Identities=25%  Similarity=0.294  Sum_probs=126.8

Q ss_pred             CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCc
Q 048681           12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWR   91 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~   91 (266)
                      +|+.|++++|.+++ +|..+  .++|++|++++|.++ .+|.     .+++|++|++++|.+                 .
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip~-----~l~~L~~L~Ls~N~l-----------------~  113 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPE-----LPASLEYLDACDNRL-----------------S  113 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCCC-----CCTTCCEEECCSSCC-----------------S
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-cccc-----ccCCCCEEEccCCCC-----------------C
Confidence            89999999999986 56555  378999999999998 5652     248999999999874                 1


Q ss_pred             ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681           92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA  171 (266)
Q Consensus        92 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  171 (266)
                      .+|. +..  +|++|++++|.+++ +|.    .+++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|. +.
T Consensus       114 ~ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~  179 (571)
T 3cvr_A          114 TLPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP  179 (571)
T ss_dssp             CCCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC
T ss_pred             Ccch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh
Confidence            2233 222  67777777777763 555    26677777777777763 454   45677777777777763 555 32


Q ss_pred             ccccchhHHHhhhcccccccccCCCC---cCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          172 IGCFNLEYLVESLMFTTKETSYSYKG---KPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       172 ~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                         .+++.|+++.+....++.  +..   ...+.|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|
T Consensus       180 ---~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          180 ---ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             ---TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             ---CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence               556666666555443333  110   01122388899999888 688877778888888888888886644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=2.5e-20  Score=162.74  Aligned_cols=60  Identities=23%  Similarity=0.148  Sum_probs=33.0

Q ss_pred             CCcEEECCCccCcc----CCChhhhcCCCCcEEeccCCcccccCCCCcchhh----cccccccccccch
Q 048681           12 NLQELHMGANDLRG----TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHL----ITSIEYLSTLNYL   72 (266)
Q Consensus        12 ~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~----~~~L~~L~~~~~~   72 (266)
                      +|++|++++|.+..    .++..|..+++|++|++++|.+++..+. .+...    ..+|++|++++|.
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ-LLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSC
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH-HHHHHHhcCCCcceEEECCCCC
Confidence            56777777776663    2355666666777777776666543222 22221    1245666665554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=2.4e-18  Score=145.25  Aligned_cols=206  Identities=18%  Similarity=0.152  Sum_probs=113.9

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhccccccccc-ccchhhhhccCCCCcceeccc
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLST-LNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~-~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      +++++|++++|.|+.+.+.+|+++++|++|++++|.+.+.++...|..+ ++++++.. ..|.                 
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L-~~l~~~l~~~~N~-----------------   91 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKANN-----------------   91 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC-TTCCEEEEEEETT-----------------
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc-hhhhhhhcccCCc-----------------
Confidence            3566666666666655455566666666666666665544544234444 44443222 2222                 


Q ss_pred             Cccc-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEccc-ccccccCCccccCC-CCCCEEEccCCeeeecC
Q 048681           90 WRPF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSR-NEFDGSIPSSIGDL-NSLKFLDLSHNQLTGEI  166 (266)
Q Consensus        90 ~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~  166 (266)
                      +..+ +..+..+++|++|++++|.+. .+++..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++ .+
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i  169 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI  169 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred             ccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CC
Confidence            2333 345677788888888888887 44444333345677777755 44543334455554 35778888888887 45


Q ss_pred             CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccC-CcccccCC-ccccccccCCeeecccccccccCC--
Q 048681          167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSC-NKLVGEIP-PQIGKLTRVRALNLSHNNLTGVIP--  242 (266)
Q Consensus       167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--  242 (266)
                      +...+.                           ..+|+.+++.+ |.++ .+| ..|..+++|++|++++|+++..++  
T Consensus       170 ~~~~f~---------------------------~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~  221 (350)
T 4ay9_X          170 HNSAFN---------------------------GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG  221 (350)
T ss_dssp             CTTSST---------------------------TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred             Chhhcc---------------------------ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh
Confidence            544431                           34556666653 4444 344 345666666666666666665433  


Q ss_pred             -----eEEeeCCeeeecCChhhhhcccC
Q 048681          243 -----SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       243 -----~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                           .|.+.++.-.+.+|. +.++++|
T Consensus       222 ~~~L~~L~~l~~~~l~~lP~-l~~l~~L  248 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLPT-LEKLVAL  248 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred             hccchHhhhccCCCcCcCCC-chhCcCh
Confidence                 455444443335553 4444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.9e-18  Score=135.14  Aligned_cols=133  Identities=21%  Similarity=0.230  Sum_probs=80.6

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      .++|++|++++|.+....+..|..+++|++|++++|.+++ ++...+..+ ++|++|++++|..                
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l-~~L~~L~Ls~n~l----------------   88 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKL-TSLTYLNLSTNQL----------------   88 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTC-TTCCEEECCSSCC----------------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCC-CCcCEEECCCCcC----------------
Confidence            4689999999999998887888999999999999999984 444244455 6666666655542                


Q ss_pred             Ccccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCee
Q 048681           90 WRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        90 ~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                       ..++ ..+..+++|++|++++|.++ .+++..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        89 -~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           89 -QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             -CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             -CccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence             1111 11344455555555555554 33333222345555555555555433333344555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=3e-18  Score=154.02  Aligned_cols=176  Identities=20%  Similarity=0.280  Sum_probs=133.0

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcc
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSF   84 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~   84 (266)
                      ..+..+++|+.|++++|.+... + .|..+++|+.|+|++|.+++..   .+..+ ++|+.|++++|.+.          
T Consensus        37 ~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~---~l~~l-~~L~~L~Ls~N~l~----------  100 (605)
T 1m9s_A           37 VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK---PLTNL-KNLGWLFLDENKIK----------  100 (605)
T ss_dssp             ECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCG---GGGGC-TTCCEEECCSSCCC----------
T ss_pred             cchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCCh---hhccC-CCCCEEECcCCCCC----------
Confidence            3456788999999999998843 3 5889999999999999988533   36666 89999999988741          


Q ss_pred             eecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           85 TITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                             .++ .+..+++|++|++++|.+. .++ .+.. +++|+.|++++|.+...  ..+..+++|+.|++++|++.+
T Consensus       101 -------~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          101 -------DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             -------CCT-TSTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             -------CCh-hhccCCCCCEEEecCCCCC-CCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence                   112 4567888999999999987 343 3444 88999999999998743  677889999999999999874


Q ss_pred             cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          165 EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       165 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      ..|  + .                          .++.|+.|+|++|.+++ ++ .+..+++|+.|++++|++++.
T Consensus       168 ~~~--l-~--------------------------~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          168 IVP--L-A--------------------------GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CGG--G-T--------------------------TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             chh--h-c--------------------------cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            333  2 1                          26777888888887774 43 467778888888888877754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=3.3e-18  Score=132.76  Aligned_cols=154  Identities=20%  Similarity=0.255  Sum_probs=105.0

Q ss_pred             hcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCc
Q 048681           32 ENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKK  111 (266)
Q Consensus        32 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n  111 (266)
                      +.+++|++|++++|.++ .++  ++..+ ++|++|++++|.+ .                . ...+..+++|++|++++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l-~~L~~L~l~~n~~-~----------------~-~~~l~~l~~L~~L~l~~n   98 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT--GIEYA-HNIKDLTINNIHA-T----------------N-YNPISGLSNLERLRIMGK   98 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT--TGGGC-TTCSEEEEESCCC-S----------------C-CGGGTTCTTCCEEEEECT
T ss_pred             hhcCCccEEeccCCCcc-ChH--HHhcC-CCCCEEEccCCCC-C----------------c-chhhhcCCCCCEEEeECC
Confidence            44555555555555554 222  24444 5555555555421 0                0 112455678899999999


Q ss_pred             cccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe-eeecCCccccccccchhHHHhhhcccccc
Q 048681          112 FFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ-LTGEIPKHLAIGCFNLEYLVESLMFTTKE  190 (266)
Q Consensus       112 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  190 (266)
                      .+++..+..+.. +++|+.|++++|.+....+..+..+++|+.|++++|+ ++ .++ .+.                   
T Consensus        99 ~l~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-------------------  156 (197)
T 4ezg_A           99 DVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-------------------  156 (197)
T ss_dssp             TCBGGGSCCCTT-CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-------------------
T ss_pred             ccCcccChhhcC-CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-------------------
Confidence            988656666655 8899999999999986677888899999999999997 65 443 221                   


Q ss_pred             cccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccc
Q 048681          191 TSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG  239 (266)
Q Consensus       191 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  239 (266)
                              .+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus       157 --------~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          157 --------TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             --------GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             --------CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence                    26889999999999984 55 57889999999999998864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=2.5e-20  Score=162.73  Aligned_cols=241  Identities=19%  Similarity=0.108  Sum_probs=147.4

Q ss_pred             ccCCCCCcEEECCCccCccC----CChhhhcCCCCcEEeccCCcccccCCCCcchhhcc----cccccccccchhhhhcc
Q 048681            7 LFRLRNLQELHMGANDLRGT----LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT----SIEYLSTLNYLVLVSML   78 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~----~L~~L~~~~~~~~~~~~   78 (266)
                      +..+++|++|++++|.+...    ++..+..+++|++|++++|.+++..+. .+...+.    +|++|++++|.+..   
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~---   99 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH-CVLQGLQTPSCKIQKLSLQNCCLTG---   99 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH-HHHHTTCSTTCCCCEEECTTSCCBG---
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH-HHHHHHhhCCCceeEEEccCCCCCH---
Confidence            44566666666666666532    344555566666666666666543332 2333223    46666666665211   


Q ss_pred             CCCCcceecccCcccccCcccccCccEEEccCccccccCCcccc----ccCCCCcEEEccccccccc----CCccccCCC
Q 048681           79 HFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG----VYFPRLMYLNLSRNEFDGS----IPSSIGDLN  150 (266)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~l~~l~  150 (266)
                               ..+..++..+..+++|++|++++|.+++..+..+.    ...++|++|++++|.++..    ++..+..++
T Consensus       100 ---------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  170 (461)
T 1z7x_W          100 ---------AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP  170 (461)
T ss_dssp             ---------GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT
T ss_pred             ---------HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC
Confidence                     01123455567788899999999988744333322    2245799999999988743    355566778


Q ss_pred             CCCEEEccCCeeeecCCccccc----cccchhHHHhhhcccccccc--cCCCCcCCCCccEEEccCCcccccC-----Cc
Q 048681          151 SLKFLDLSHNQLTGEIPKHLAI----GCFNLEYLVESLMFTTKETS--YSYKGKPLNKMYGIDLSCNKLVGEI-----PP  219 (266)
Q Consensus       151 ~L~~L~l~~n~~~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~-----~~  219 (266)
                      +|+.|++++|++++..+..+..    ...+++.+++..+.......  .......++.|+.|++++|.+++..     +.
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence            9999999999887543333332    23366777766664443221  1122224678889999988877432     22


Q ss_pred             cccccccCCeeeccccccccc--------------CCeEEeeCCeeeecCChhhh
Q 048681          220 QIGKLTRVRALNLSHNNLTGV--------------IPSLDVSYNNLNGKIPPQLV  260 (266)
Q Consensus       220 ~~~~l~~L~~L~l~~n~l~~~--------------~~~l~l~~n~i~~~~p~~~~  260 (266)
                      .+..+++|++|++++|.+++.              +..|++++|.+.+..+..+.
T Consensus       251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  305 (461)
T 1z7x_W          251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  305 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence            223578899999998888752              33889999988765555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=7e-19  Score=149.17  Aligned_cols=224  Identities=17%  Similarity=0.126  Sum_probs=148.2

Q ss_pred             EEECCCccCccCCChhhhcCCCCcEEeccCCcccccCC----CCcchhhcc-cccccccccchhhhhccCCCCcceeccc
Q 048681           15 ELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNIS----SSPLLHLIT-SIEYLSTLNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        15 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~~~~~-~L~~L~~~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      ++.++.|.+++.+|..+....+|++|++++|.+++..+    . .+..+ + +|++|++++|.+.....           
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~-~~~L~~L~Ls~N~l~~~~~-----------   68 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQ-AFANT-PASVTSLNLSGNSLGFKNS-----------   68 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTC-CTTCCEEECCSSCGGGSCH-----------
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHH-HHHhC-CCceeEEECcCCCCCHHHH-----------
Confidence            47889999998877766667779999999999986544    3 45555 5 89999999997422100           


Q ss_pred             CcccccCcccc-cCccEEEccCccccccCCcccccc---C-CCCcEEEcccccccccCCcc----ccC-CCCCCEEEccC
Q 048681           90 WRPFRMPIQSH-WHLATLYVSKKFFQGNIPLEIGVY---F-PRLMYLNLSRNEFDGSIPSS----IGD-LNSLKFLDLSH  159 (266)
Q Consensus        90 ~~~l~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~---~-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~  159 (266)
                       ..+...+... ++|++|++++|.+++..+..+...   . ++|++|++++|.++...+..    +.. .++|+.|++++
T Consensus        69 -~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  147 (362)
T 3goz_A           69 -DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG  147 (362)
T ss_dssp             -HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred             -HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence             0011111222 789999999999986555443331   3 79999999999997544433    333 36999999999


Q ss_pred             CeeeecCCccccc---cc-cchhHHHhhhcccccccccCC--CCcCC-CCccEEEccCCccccc----CCccccc-cccC
Q 048681          160 NQLTGEIPKHLAI---GC-FNLEYLVESLMFTTKETSYSY--KGKPL-NKMYGIDLSCNKLVGE----IPPQIGK-LTRV  227 (266)
Q Consensus       160 n~~~~~~~~~~~~---~~-~~l~~l~~~~~~~~~~~~~~~--~~~~~-~~L~~L~L~~n~i~~~----~~~~~~~-l~~L  227 (266)
                      |++++.....+..   .. .+++.+++..+..........  ..... ++|+.|+|++|.+++.    ++..+.. .++|
T Consensus       148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L  227 (362)
T 3goz_A          148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV  227 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred             CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence            9998543333322   22 267777777665544332211  11123 4788888888888753    3444444 3578


Q ss_pred             Ceeeccccccccc--------------CCeEEeeCCeee
Q 048681          228 RALNLSHNNLTGV--------------IPSLDVSYNNLN  252 (266)
Q Consensus       228 ~~L~l~~n~l~~~--------------~~~l~l~~n~i~  252 (266)
                      ++|++++|.+++.              +..|++++|.+.
T Consensus       228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence            8888888887753              227888888754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.74  E-value=4.3e-19  Score=151.69  Aligned_cols=220  Identities=15%  Similarity=0.090  Sum_probs=136.9

Q ss_pred             cccCCCCCcEEECCCccC---ccCCChhh-------hcCCCCcEEeccCCcccc----cCCCCcchhhcccccccccccc
Q 048681            6 GLFRLRNLQELHMGANDL---RGTLPWCL-------ENITSLKVLDLYLNQLTR----NISSSPLLHLITSIEYLSTLNY   71 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i---~~~~~~~~-------~~l~~L~~L~l~~n~i~~----~~~~~~~~~~~~~L~~L~~~~~   71 (266)
                      .+.++++|++|++++|.+   .+.+|..+       ..+++|++|++++|.++.    .++. .+..+ ++|++|++++|
T Consensus        55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~-~~L~~L~L~~n  132 (386)
T 2ca6_A           55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKH-TPLEHLYLHNN  132 (386)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH-HHHHC-TTCCEEECCSS
T ss_pred             HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH-HHHhC-CCCCEEECcCC
Confidence            467899999999999744   34455555       678999999999999986    2444 55565 99999999999


Q ss_pred             hhhhh-ccCCCCcceecccCcccccCcccc---------cCccEEEccCccccc-cCC---ccccccCCCCcEEEccccc
Q 048681           72 LVLVS-MLHFPNSFTITMSWRPFRMPIQSH---------WHLATLYVSKKFFQG-NIP---LEIGVYFPRLMYLNLSRNE  137 (266)
Q Consensus        72 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~L~~L~l~~n~~~~-~~~---~~~~~~~~~L~~L~l~~~~  137 (266)
                      ..... ...             ++..+..+         ++|++|++++|++++ .++   ..+.. +++|++|++++|.
T Consensus       133 ~l~~~~~~~-------------l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~  198 (386)
T 2ca6_A          133 GLGPQAGAK-------------IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-HRLLHTVKMVQNG  198 (386)
T ss_dssp             CCHHHHHHH-------------HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-CTTCCEEECCSSC
T ss_pred             CCCHHHHHH-------------HHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh-CCCcCEEECcCCC
Confidence            83211 100             11112222         566666666666642 222   12222 5566666666666


Q ss_pred             ccc-----cCCccccCCCCCCEEEccCCeee----ecCCccccccccchhHHHhhhccccccccc--CCC--CcCCCCcc
Q 048681          138 FDG-----SIPSSIGDLNSLKFLDLSHNQLT----GEIPKHLAIGCFNLEYLVESLMFTTKETSY--SYK--GKPLNKMY  204 (266)
Q Consensus       138 ~~~-----~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~--~~~~~~L~  204 (266)
                      +..     ..+..+..+++|+.|++++|+++    ..++..+ ..+.+++.|+++.+........  +..  ...+++|+
T Consensus       199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~  277 (386)
T 2ca6_A          199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  277 (386)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH-ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence            541     12225556666666666666653    1233322 3455555555555544333111  111  12378999


Q ss_pred             EEEccCCcccc----cCCccc-cccccCCeeecccccccccCC
Q 048681          205 GIDLSCNKLVG----EIPPQI-GKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       205 ~L~L~~n~i~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      .|++++|.+++    .+|..+ .++++|++|++++|++++..+
T Consensus       278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            99999999996    377777 568999999999999997763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=3.8e-17  Score=128.93  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      +.+++++|.++. +|..+.  ..+++|++++|.+++..+...|..+ ++|++|++++|.+                 ..+
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~L~~N~i-----------------~~i   72 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKL-PQLRKINFSNNKI-----------------TDI   72 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGC-TTCCEEECCSSCC-----------------CEE
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccC-CCCCEEECCCCcC-----------------CEE
Confidence            578899988884 555543  4568899999998865454234455 6666666666542                 111


Q ss_pred             -ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           94 -RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        94 -~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                       +..+..+++|++|++++|.++ .+++..+..+++|++|++++|.+....|..+..+++|+.|++++|++++
T Consensus        73 ~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A           73 EEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT  143 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC
T ss_pred             CHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE
Confidence             123445556666666666665 3333333335566666666666654445555566666666666666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=5.2e-17  Score=128.98  Aligned_cols=126  Identities=20%  Similarity=0.197  Sum_probs=59.2

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      +.++.+++.+. .+|..+.  ++|++|++++|.+++..+. .+..+ ++|++|++++|.+                 ..+
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~-~~~~l-~~L~~L~L~~N~l-----------------~~i   79 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPG-VFDSL-INLKELYLGSNQL-----------------GAL   79 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTT-TTTTC-TTCCEEECCSSCC-----------------CCC
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHH-HhhCc-cCCcEEECCCCCC-----------------CCc
Confidence            45667777666 3444333  6777777777777754444 44444 4444444444332                 111


Q ss_pred             c-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681           94 R-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus        94 ~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                      + ..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus        80 ~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           80 PVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             ChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            1 11233344444444444444 333332222444444444444444 33444444444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=7e-17  Score=127.44  Aligned_cols=129  Identities=16%  Similarity=0.148  Sum_probs=85.9

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      +.++.+++.++ .+|..+.  +++++|++++|.|++..+. .|..+ ++|++|++++|.+..                ..
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~-~~~~l-~~L~~L~Ls~N~i~~----------------~~   72 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPG-AFSPY-KKLRRIDLSNNQISE----------------LA   72 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTT-SSTTC-TTCCEEECCSSCCCE----------------EC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHh-HhhCC-CCCCEEECCCCcCCC----------------cC
Confidence            56788888877 4455443  6788888888888754443 56555 667777766665310                01


Q ss_pred             ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                      |..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+....+..+..+++|+.|++++|++++
T Consensus        73 ~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           73 PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             TTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             HHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence            344556677777777777776 5666555557777777777777765556667777777777777777763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=2.7e-17  Score=139.33  Aligned_cols=178  Identities=24%  Similarity=0.196  Sum_probs=130.8

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcch-hhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLL-HLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP   92 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (266)
                      +.++.+++.+. .+|..+.  ..++.|++++|.|++..+. .+. .+ ++|++|++++|.+                 ..
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~-~~~~~l-~~L~~L~L~~N~i-----------------~~   78 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAE-WTPTRL-TNLHSLLLSHNHL-----------------NF   78 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTT-SSSSCC-TTCCEEECCSSCC-----------------CE
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChh-hhhhcc-cccCEEECCCCcC-----------------Cc
Confidence            57888888888 4555443  4588899999998865444 555 55 8888888888864                 22


Q ss_pred             cc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681           93 FR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA  171 (266)
Q Consensus        93 l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  171 (266)
                      ++ ..+..+++|++|++++|+++ .++...+..+++|+.|++++|.+....+..+..+++|+.|++++|+++ .+|...+
T Consensus        79 i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~  156 (361)
T 2xot_A           79 ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI  156 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGT
T ss_pred             cChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHh
Confidence            22 34677788999999999987 555555555889999999999998667788889999999999999988 4665543


Q ss_pred             ccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcccccccc--CCeeeccccccc
Q 048681          172 IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR--VRALNLSHNNLT  238 (266)
Q Consensus       172 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~l~~n~l~  238 (266)
                      ..+                       ..+++|+.|+|++|.+++..+..+..++.  ++.|++.+|++.
T Consensus       157 ~~~-----------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          157 KDG-----------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             C---------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCc-----------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            211                       12678899999999988433355666766  478888888876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=1.6e-17  Score=140.14  Aligned_cols=210  Identities=20%  Similarity=0.150  Sum_probs=130.1

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcc
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSF   84 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~   84 (266)
                      +.++++.. ++++-+++.++ .+|..+  .+++++|++++|+|+ .+|...|..+ ++|++|++++|.+...        
T Consensus         4 ~~~C~C~~-~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l-~~L~~L~Ls~N~i~~~--------   69 (350)
T 4ay9_X            4 HRICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGF-GDLEKIEISQNDVLEV--------   69 (350)
T ss_dssp             CSSSEEET-TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTC-TTCCEEEEECCTTCCE--------
T ss_pred             CCccEeeC-CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCC-CCCCEEECcCCCCCCc--------
Confidence            34555544 56778888888 556655  368999999999998 4555356666 7777777777653211        


Q ss_pred             eecccCcccc-cCcccccCccE-EEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC-Ce
Q 048681           85 TITMSWRPFR-MPIQSHWHLAT-LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH-NQ  161 (266)
Q Consensus        85 ~~~~~~~~l~-~~~~~~~~L~~-L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-n~  161 (266)
                              ++ ..|..++++++ +.+..|+++ .+++..+..+++|++|++++|.+....+..+....++..+++.+ ++
T Consensus        70 --------i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~  140 (350)
T 4ay9_X           70 --------IEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN  140 (350)
T ss_dssp             --------ECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT
T ss_pred             --------cChhHhhcchhhhhhhcccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccc
Confidence                    11 12344555544 444556665 44444444466777777777766533333444445556666644 34


Q ss_pred             eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccc-cccccc
Q 048681          162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH-NNLTGV  240 (266)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~  240 (266)
                      +. .++...+..                         ....++.|++++|.++ .++.......+|+.+++.+ |.++..
T Consensus       141 i~-~l~~~~f~~-------------------------~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i  193 (350)
T 4ay9_X          141 IH-TIERNSFVG-------------------------LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEEL  193 (350)
T ss_dssp             CC-EECTTSSTT-------------------------SBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCC
T ss_pred             cc-cccccchhh-------------------------cchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCC
Confidence            43 333222111                         1356899999999998 5666666677899999976 556644


Q ss_pred             CC----------eEEeeCCeeeecCCh-hhhhcccC
Q 048681          241 IP----------SLDVSYNNLNGKIPP-QLVELNAL  265 (266)
Q Consensus       241 ~~----------~l~l~~n~i~~~~p~-~~~~~~~l  265 (266)
                      ++          .|++++|+|+ .+|. .+.+++.|
T Consensus       194 ~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L  228 (350)
T 4ay9_X          194 PNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL  228 (350)
T ss_dssp             CTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEE
T ss_pred             CHHHhccCcccchhhcCCCCcC-ccChhhhccchHh
Confidence            33          8999999999 5554 56666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=5.9e-17  Score=144.41  Aligned_cols=170  Identities=22%  Similarity=0.216  Sum_probs=125.9

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      +++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|.  +.   .+|++|++++|.+                
T Consensus        79 ~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~---~~L~~L~Ls~N~l----------------  132 (571)
T 3cvr_A           79 PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LP---ASLKHLDVDNNQL----------------  132 (571)
T ss_dssp             CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CC---TTCCEEECCSSCC----------------
T ss_pred             cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hh---cCCCEEECCCCcC----------------
Confidence            478999999999999 556   457999999999999986 654  32   3899999999874                


Q ss_pred             CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681           90 WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH  169 (266)
Q Consensus        90 ~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  169 (266)
                       ..+|.   .+++|+.|++++|.++ .+|.    .+++|+.|++++|.+++ +|. +.  ++|+.|++++|+++ .+|. 
T Consensus       133 -~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          133 -TMLPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             -SCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred             -CCCCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence             22333   4577888888888887 4665    36788888888888874 666 54  78888888888887 6666 


Q ss_pred             ccccccch-------hHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcccccccc
Q 048681          170 LAIGCFNL-------EYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTR  226 (266)
Q Consensus       170 ~~~~~~~l-------~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  226 (266)
                      +..   ++       +.+++..+....+   +.....+++|+.|++++|.+++.+|..+..+..
T Consensus       198 ~~~---~L~~~~~~L~~L~Ls~N~l~~l---p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          198 VPV---RNHHSEETEIFFRCRENRITHI---PENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CC-----------CCEEEECCSSCCCCC---CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             HHH---hhhcccccceEEecCCCcceec---CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            432   45       6666666655433   333334889999999999999888887776554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=7.1e-19  Score=147.40  Aligned_cols=219  Identities=16%  Similarity=0.113  Sum_probs=164.1

Q ss_pred             CCCcEEECCCccCccCCChhhhcC--CCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681           11 RNLQELHMGANDLRGTLPWCLENI--TSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM   88 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~   88 (266)
                      ..++.++++++.+.   +..+..+  ++++.|++++|.+++..+.  +..+ ++|++|++++|.....            
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~-~~L~~L~L~~~~l~~~------------  108 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSP-FRVQHMDLSNSVIEVS------------  108 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCC-BCCCEEECTTCEECHH------------
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccC-CCCCEEEccCCCcCHH------------
Confidence            34789999999876   5677777  9999999999999875543  5566 9999999999873111            


Q ss_pred             cCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccc-cccc-cCCccccCCCCCCEEEccCC-eeeec
Q 048681           89 SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN-EFDG-SIPSSIGDLNSLKFLDLSHN-QLTGE  165 (266)
Q Consensus        89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~n-~~~~~  165 (266)
                         .++..+..+++|++|++++|.+++..+..+.. +++|++|++++| .++. .++..+..+++|+.|++++| .+++.
T Consensus       109 ---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  184 (336)
T 2ast_B          109 ---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK  184 (336)
T ss_dssp             ---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred             ---HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence               13334567889999999999998777776666 899999999999 5653 25666788999999999999 88743


Q ss_pred             CCcccccccc-chhHHHhhhccc-ccccccCCCCcCCCCccEEEccCCc-ccccCCccccccccCCeeeccccc-cccc-
Q 048681          166 IPKHLAIGCF-NLEYLVESLMFT-TKETSYSYKGKPLNKMYGIDLSCNK-LVGEIPPQIGKLTRVRALNLSHNN-LTGV-  240 (266)
Q Consensus       166 ~~~~~~~~~~-~l~~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~-  240 (266)
                      ........++ +++.+++..+.. ......+.....+++|+.|++++|. +++..+..+..+++|++|++++|. ++.. 
T Consensus       185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence            2233445677 888888877642 1111122222347899999999998 776777788899999999999994 4322 


Q ss_pred             ---------CCeEEeeCCeee
Q 048681          241 ---------IPSLDVSYNNLN  252 (266)
Q Consensus       241 ---------~~~l~l~~n~i~  252 (266)
                               +..|++++| +.
T Consensus       265 ~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          265 LLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             GGGGGGCTTCCEEECTTS-SC
T ss_pred             HHHHhcCCCCCEEeccCc-cC
Confidence                     228999998 54

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=8.9e-17  Score=130.27  Aligned_cols=170  Identities=18%  Similarity=0.236  Sum_probs=86.3

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      +.+++.++++++.+... + .+..+++|++|++++|.++. ++  .+..+ ++|++|++++|.+                
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~--~l~~l-~~L~~L~L~~N~i----------------   75 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA--GMQFF-TNLKELHLSHNQI----------------   75 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT--TGGGC-TTCCEEECCSSCC----------------
T ss_pred             HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch--HHhhC-CCCCEEECCCCcc----------------
Confidence            33444445555555522 2 34555555555555555542 22  34444 5555555555542                


Q ss_pred             CcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681           90 WRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH  169 (266)
Q Consensus        90 ~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  169 (266)
                       ..++. +..+++|++|++++|+++ .++....   ++|+.|++++|.+++ + ..+..+++|+.|++++|++++ ++ .
T Consensus        76 -~~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~  145 (263)
T 1xeu_A           76 -SDLSP-LKDLTKLEELSVNRNRLK-NLNGIPS---ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-M  145 (263)
T ss_dssp             -CCCGG-GTTCSSCCEEECCSSCCS-CCTTCCC---SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-G
T ss_pred             -CCChh-hccCCCCCEEECCCCccC-CcCcccc---CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-H
Confidence             11122 345556666666666665 3333211   566666666666652 2 245566666666666666652 22 1


Q ss_pred             ccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       170 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      + .                          .++.|+.|++++|.+++.  ..+..+++|+.|++++|++++.
T Consensus       146 l-~--------------------------~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          146 L-G--------------------------FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             G-G--------------------------GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             H-c--------------------------cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            1 0                          145555555555555532  3355555555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=1.8e-16  Score=125.07  Aligned_cols=134  Identities=15%  Similarity=0.203  Sum_probs=114.7

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      ++|++|++++|.+....+..|..+++|++|++++|.+++..|. .|..+ ++|++|++++|.+                 
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l-~~L~~L~Ls~N~l-----------------   92 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGL-RSLNSLVLYGNKI-----------------   92 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTC-SSCCEEECCSSCC-----------------
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCC-cCCCEEECCCCcC-----------------
Confidence            6899999999999988888999999999999999999977677 88888 9999999999974                 


Q ss_pred             cccccC-cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           91 RPFRMP-IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        91 ~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                      ..+|.. +..+++|++|++++|++++..+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            233433 56789999999999999854444444 48999999999999986666778899999999999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.5e-16  Score=130.76  Aligned_cols=156  Identities=23%  Similarity=0.308  Sum_probs=125.0

Q ss_pred             CCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681            2 NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP   81 (266)
Q Consensus         2 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~   81 (266)
                      .+++++..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++  .+..+ ++|++|++++|.+.       
T Consensus        59 ~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~l-~~L~~L~L~~n~i~-------  125 (291)
T 1h6t_A           59 KSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS--SLKDL-KKLKSLSLEHNGIS-------  125 (291)
T ss_dssp             CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG--GGTTC-TTCCEEECTTSCCC-------
T ss_pred             ccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch--hhccC-CCCCEEECCCCcCC-------
Confidence            456778999999999999999996554  9999999999999999985 33  46676 99999999998741       


Q ss_pred             CcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCe
Q 048681           82 NSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ  161 (266)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  161 (266)
                                .+ ..+..+++|++|++++|.+++ + ..+.. +++|+.|++++|.+.+. +. +..+++|+.|++++|+
T Consensus       126 ----------~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~-l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          126 ----------DI-NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             ----------CC-GGGGGCTTCCEEECCSSCCCC-C-GGGGG-CTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred             ----------CC-hhhcCCCCCCEEEccCCcCCc-c-hhhcc-CCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCc
Confidence                      11 235678899999999999984 4 34444 89999999999999744 33 8899999999999999


Q ss_pred             eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccc
Q 048681          162 LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG  215 (266)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~  215 (266)
                      +++ ++. +                           ..+++|+.|++++|.++.
T Consensus       190 i~~-l~~-l---------------------------~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISD-LRA-L---------------------------AGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCB-CGG-G---------------------------TTCTTCSEEEEEEEEEEC
T ss_pred             CCC-Chh-h---------------------------ccCCCCCEEECcCCcccC
Confidence            973 432 2                           126788999999998874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=2.8e-16  Score=123.95  Aligned_cols=156  Identities=17%  Similarity=0.077  Sum_probs=121.2

Q ss_pred             CcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc--ccCcccccCccEEEccCcccc
Q 048681           37 LKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF--RMPIQSHWHLATLYVSKKFFQ  114 (266)
Q Consensus        37 L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~n~~~  114 (266)
                      -+++++++|.++ .+|. .+.   ..++.|++++|.+                 ..+  +..+..+++|++|++++|.++
T Consensus        13 ~~~l~~s~n~l~-~iP~-~~~---~~~~~L~L~~N~l-----------------~~~~~~~~~~~l~~L~~L~L~~N~i~   70 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPE-HIP---QYTAELRLNNNEF-----------------TVLEATGIFKKLPQLRKINFSNNKIT   70 (220)
T ss_dssp             TTEEECCSSCCS-SCCS-CCC---TTCSEEECCSSCC-----------------CEECCCCCGGGCTTCCEEECCSSCCC
T ss_pred             CCEeEeCCCCcc-cCcc-CCC---CCCCEEEcCCCcC-----------------CccCchhhhccCCCCCEEECCCCcCC
Confidence            468999999998 4776 442   4567888888863                 122  123667888999999999998


Q ss_pred             ccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccC
Q 048681          115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYS  194 (266)
Q Consensus       115 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  194 (266)
                       .+++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..|..+.                       
T Consensus        71 -~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------------  126 (220)
T 2v70_A           71 -DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-----------------------  126 (220)
T ss_dssp             -EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-----------------------
T ss_pred             -EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-----------------------
Confidence             44444344488999999999999866666788899999999999998854444442                       


Q ss_pred             CCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          195 YKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       195 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                          .+++|+.|+|++|.+++..|..|..+++|+.|++++|++.+.-+
T Consensus       127 ----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          127 ----GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             ----TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ----CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence                36889999999999997778889999999999999999986544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=4.1e-16  Score=140.19  Aligned_cols=158  Identities=23%  Similarity=0.339  Sum_probs=126.4

Q ss_pred             CCCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCC
Q 048681            1 MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF   80 (266)
Q Consensus         1 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~   80 (266)
                      |.+++.+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+++ ++  .+..+ ++|+.|++++|.+.      
T Consensus        55 i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~--~l~~l-~~L~~L~Ls~N~l~------  122 (605)
T 1m9s_A           55 IKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS--SLKDL-KKLKSLSLEHNGIS------  122 (605)
T ss_dssp             CCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT--TSTTC-TTCCEEECTTSCCC------
T ss_pred             CCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch--hhccC-CCCCEEEecCCCCC------
Confidence            3456788999999999999999996654  8999999999999999985 33  57777 99999999998741      


Q ss_pred             CCcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           81 PNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                                 .+ ..+..+++|+.|++++|.+++ + ..+.. +++|+.|++++|.+.+..|  +..+++|+.|++++|
T Consensus       123 -----------~l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          123 -----------DI-NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             -----------CC-GGGGGCTTCSEEECCSSCCCC-C-GGGGS-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             -----------CC-ccccCCCccCEEECCCCccCC-c-hhhcc-cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence                       11 236678899999999999984 4 34444 8899999999999985444  889999999999999


Q ss_pred             eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccccc
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE  216 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  216 (266)
                      ++++ ++. +                           ..++.|+.|+|++|.+.+.
T Consensus       186 ~i~~-l~~-l---------------------------~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          186 HISD-LRA-L---------------------------AGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCB-CGG-G---------------------------TTCTTCSEEECCSEEEECC
T ss_pred             CCCC-ChH-H---------------------------ccCCCCCEEEccCCcCcCC
Confidence            9974 332 2                           1267889999999988743

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=5.9e-16  Score=131.10  Aligned_cols=165  Identities=25%  Similarity=0.266  Sum_probs=125.8

Q ss_pred             CcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccc-cCcc-cccCccEEEccCcccc
Q 048681           37 LKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFR-MPIQ-SHWHLATLYVSKKFFQ  114 (266)
Q Consensus        37 L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~L~~L~l~~n~~~  114 (266)
                      -++++++++.++ .+|. .+   +..++.|++++|.+                 ..++ ..+. .+++|++|++++|.++
T Consensus        20 ~~~l~c~~~~l~-~iP~-~~---~~~l~~L~Ls~N~l-----------------~~l~~~~~~~~l~~L~~L~L~~N~i~   77 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQ-SL---PSYTALLDLSHNNL-----------------SRLRAEWTPTRLTNLHSLLLSHNHLN   77 (361)
T ss_dssp             TTEEECCSSCCS-SCCS-SC---CTTCSEEECCSSCC-----------------CEECTTSSSSCCTTCCEEECCSSCCC
T ss_pred             CCEEEeCCCCcC-ccCc-cC---CCCCCEEECCCCCC-----------------CccChhhhhhcccccCEEECCCCcCC
Confidence            478999999998 5776 43   35688899998874                 1222 2244 6788999999999998


Q ss_pred             ccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccC
Q 048681          115 GNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYS  194 (266)
Q Consensus       115 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  194 (266)
                       .+++..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..+..+.                       
T Consensus        78 -~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-----------------------  133 (361)
T 2xot_A           78 -FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-----------------------  133 (361)
T ss_dssp             -EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-----------------------
T ss_pred             -ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC-----------------------
Confidence             45544444488999999999999866667788999999999999998854443331                       


Q ss_pred             CCCcCCCCccEEEccCCcccccCCcc-c---cccccCCeeecccccccccCC------------eEEeeCCeee
Q 048681          195 YKGKPLNKMYGIDLSCNKLVGEIPPQ-I---GKLTRVRALNLSHNNLTGVIP------------SLDVSYNNLN  252 (266)
Q Consensus       195 ~~~~~~~~L~~L~L~~n~i~~~~~~~-~---~~l~~L~~L~l~~n~l~~~~~------------~l~l~~n~i~  252 (266)
                          .++.|+.|+|++|.++ .+|.. +   ..+++|+.|++++|++++.++            .|++++|++.
T Consensus       134 ----~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          134 ----DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ----TCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ----CcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence                3789999999999999 45554 4   568999999999999997653            5899999986

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=4.1e-18  Score=152.24  Aligned_cols=191  Identities=17%  Similarity=0.146  Sum_probs=139.2

Q ss_pred             ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-------------ccccCCCCcchhhcccccccc-cccch
Q 048681            7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-------------LTRNISSSPLLHLITSIEYLS-TLNYL   72 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~~~~~~L~~L~-~~~~~   72 (266)
                      +..+++|+.|++++|.+. .+|..++.+++|+.|++++|.             +.+..|. .+..+ ++|+.|+ +..+.
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l-~~L~~L~~l~~n~  421 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYF-STLKAVDPMRAAY  421 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHH-HHHHHHCGGGHHH
T ss_pred             cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHH-HhcccCcchhhcc
Confidence            356888889999999887 678889999999999987764             3434444 55566 7788887 44443


Q ss_pred             hhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCC
Q 048681           73 VLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSL  152 (266)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  152 (266)
                      . ..+..   +.........++     ...|+.|++++|.++ .+|. +.. +++|+.|++++|.++ .+|..+..+++|
T Consensus       422 ~-~~L~~---l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~-~lp~-~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  488 (567)
T 1dce_A          422 L-DDLRS---KFLLENSVLKME-----YADVRVLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLR-ALPPALAALRCL  488 (567)
T ss_dssp             H-HHHHH---HHHHHHHHHHHH-----HTTCSEEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred             c-chhhh---hhhhcccccccC-----ccCceEEEecCCCCC-CCcC-ccc-cccCcEeecCccccc-ccchhhhcCCCC
Confidence            1 11000   000000000111     125889999999998 5775 554 889999999999998 788899999999


Q ss_pred             CEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccC-CccccccccCCeee
Q 048681          153 KFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEI-PPQIGKLTRVRALN  231 (266)
Q Consensus       153 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~  231 (266)
                      +.|++++|++++ +| .+.                           .+++|+.|+|++|.+++.. |..+..+++|+.|+
T Consensus       489 ~~L~Ls~N~l~~-lp-~l~---------------------------~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          489 EVLQASDNALEN-VD-GVA---------------------------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             CEEECCSSCCCC-CG-GGT---------------------------TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CEEECCCCCCCC-Cc-ccC---------------------------CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            999999999984 55 331                           3788999999999999655 88899999999999


Q ss_pred             cccccccccCC
Q 048681          232 LSHNNLTGVIP  242 (266)
Q Consensus       232 l~~n~l~~~~~  242 (266)
                      +++|++++.+|
T Consensus       540 L~~N~l~~~~~  550 (567)
T 1dce_A          540 LQGNSLCQEEG  550 (567)
T ss_dssp             CTTSGGGGSSS
T ss_pred             ecCCcCCCCcc
Confidence            99999987765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=9.8e-16  Score=121.56  Aligned_cols=134  Identities=22%  Similarity=0.207  Sum_probs=114.7

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceeccc
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMS   89 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~   89 (266)
                      .++|++|++++|.+.+..|..|.++++|++|++++|.++. ++...+..+ ++|++|++++|.+                
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l-~~L~~L~Ls~N~l----------------  100 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSL-TQLTVLDLGTNQL----------------  100 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTC-TTCCEEECCSSCC----------------
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccC-CCcCEEECCCCcC----------------
Confidence            3889999999999999889999999999999999999974 554256676 9999999999974                


Q ss_pred             Ccccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           90 WRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        90 ~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                       ..++ ..+..+++|++|++++|+++ .+|..+.. +++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus       101 -~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          101 -TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             -CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             -CccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence             2223 33567899999999999998 88888765 8999999999999985555678899999999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=3.2e-16  Score=127.01  Aligned_cols=163  Identities=18%  Similarity=0.223  Sum_probs=127.3

Q ss_pred             cCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCcc
Q 048681           33 NITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF  112 (266)
Q Consensus        33 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~  112 (266)
                      .+.++..++++++.+++..   .+..+ ++|+.|++++|.+                 ..++ .+..+++|++|++++|.
T Consensus        17 ~l~~l~~l~l~~~~i~~~~---~~~~l-~~L~~L~l~~n~i-----------------~~l~-~l~~l~~L~~L~L~~N~   74 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV---SQKEL-SGVQNFNGDNSNI-----------------QSLA-GMQFFTNLKELHLSHNQ   74 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE---CHHHH-TTCSEEECTTSCC-----------------CCCT-TGGGCTTCCEEECCSSC
T ss_pred             HHHHHHHHHhcCCCccccc---chhhc-CcCcEEECcCCCc-----------------ccch-HHhhCCCCCEEECCCCc
Confidence            4667888899999987532   46666 9999999998864                 2233 46778899999999999


Q ss_pred             ccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccc
Q 048681          113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETS  192 (266)
Q Consensus       113 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  192 (266)
                      ++ .+++ +. .+++|+.|++++|.+.+ ++... . ++|+.|++++|++++ ++. +                      
T Consensus        75 i~-~~~~-l~-~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~~-l----------------------  124 (263)
T 1xeu_A           75 IS-DLSP-LK-DLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TDS-L----------------------  124 (263)
T ss_dssp             CC-CCGG-GT-TCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SGG-G----------------------
T ss_pred             cC-CChh-hc-cCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Chh-h----------------------
Confidence            98 4555 44 48899999999999973 44433 3 899999999999874 321 2                      


Q ss_pred             cCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC--------eEEeeCCeeeec
Q 048681          193 YSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLNGK  254 (266)
Q Consensus       193 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~~~  254 (266)
                           ..++.|+.|++++|.+++ ++ .+..+++|+.|++++|++++...        .|++++|.+.+.
T Consensus       125 -----~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          125 -----IHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -----TTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred             -----cCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence                 137899999999999984 54 58899999999999999987622        899999999854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=1.9e-15  Score=116.68  Aligned_cols=111  Identities=20%  Similarity=0.272  Sum_probs=55.8

Q ss_pred             ccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHh
Q 048681          103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE  182 (266)
Q Consensus       103 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~  182 (266)
                      +++|++++|.+++..+...+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+.           
T Consensus        31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------   99 (192)
T 1w8a_A           31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-----------   99 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST-----------
T ss_pred             CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc-----------
Confidence            445555555554222222222355555555555555544455555555555555555555532222221           


Q ss_pred             hhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                                      .+++|+.|++++|.+++..|..+..+++|++|++++|++++.
T Consensus       100 ----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          100 ----------------GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ----------------TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ----------------CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence                            144555555555555544455555555555555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=5.9e-16  Score=142.21  Aligned_cols=155  Identities=19%  Similarity=0.147  Sum_probs=109.6

Q ss_pred             CCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccE
Q 048681           26 TLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLAT  105 (266)
Q Consensus        26 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~  105 (266)
                      ..+..|..+.+|+.|+|++|.+. .+|. .++.+ +.|++|++++|.+                 ..+|..+..+++|++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~~l-~~L~~L~Ls~N~l-----------------~~lp~~~~~l~~L~~  274 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISA-NIFKY-DFLTRLYLNGNSL-----------------TELPAEIKNLSNLRV  274 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCG-GGGGC-CSCSCCBCTTSCC-----------------SCCCGGGGGGTTCCE
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCCh-hhcCC-CCCCEEEeeCCcC-----------------cccChhhhCCCCCCE
Confidence            45778889999999999999998 6777 67777 9999999999875                 456777889999999


Q ss_pred             EEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhc
Q 048681          106 LYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLM  185 (266)
Q Consensus       106 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~  185 (266)
                      |++++|+++ .+|..+.. +++|+.|++++|.+. .+|..+..+++|+.|++++|++++.+|..+.........+++..+
T Consensus       275 L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N  351 (727)
T 4b8c_D          275 LDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN  351 (727)
T ss_dssp             EECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence            999999998 88888876 899999999999997 788889999999999999999987666555322122223344443


Q ss_pred             ccccccccCCCCcCCCCccEEEccCC
Q 048681          186 FTTKETSYSYKGKPLNKMYGIDLSCN  211 (266)
Q Consensus       186 ~~~~~~~~~~~~~~~~~L~~L~L~~n  211 (266)
                      ...        ...+..|+.|+++.|
T Consensus       352 ~l~--------~~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          352 RPE--------IPLPHERRFIEINTD  369 (727)
T ss_dssp             CCC--------CCCCCC---------
T ss_pred             ccc--------CcCccccceeEeecc
Confidence            321        223567778888777

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=1.5e-16  Score=146.16  Aligned_cols=71  Identities=31%  Similarity=0.386  Sum_probs=36.1

Q ss_pred             cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681           95 MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH  169 (266)
Q Consensus        95 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  169 (266)
                      ..+..+..|+.|++++|.+. .+|..++. +++|+.|+|++|.++ .+|..+..+++|+.|++++|+++ .+|..
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~  288 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE  288 (727)
T ss_dssp             ----CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS
T ss_pred             hhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh
Confidence            33444555555555555554 45554443 555555555555555 45555555555555555555555 44433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=2.8e-15  Score=116.13  Aligned_cols=153  Identities=17%  Similarity=0.205  Sum_probs=121.4

Q ss_pred             cCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681            8 FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT   87 (266)
Q Consensus         8 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~   87 (266)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.++.  +. .+..+ ++|++|++++|....            
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~-~l~~l-~~L~~L~l~~n~l~~------------  102 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YN-PISGL-SNLERLRIMGKDVTS------------  102 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CG-GGTTC-TTCCEEEEECTTCBG------------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--ch-hhhcC-CCCCEEEeECCccCc------------
Confidence            57889999999999999 555 68999999999999998763  23 56776 999999999987421            


Q ss_pred             ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccc-ccccCCccccCCCCCCEEEccCCeeeecC
Q 048681           88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNE-FDGSIPSSIGDLNSLKFLDLSHNQLTGEI  166 (266)
Q Consensus        88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  166 (266)
                          ..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|. +. .++ .+..+++|+.|++++|++++ +
T Consensus       103 ----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~  174 (197)
T 4ezg_A          103 ----DKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-Y  174 (197)
T ss_dssp             ----GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-C
T ss_pred             ----ccChhhcCCCCCCEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-h
Confidence                12445677899999999999998666666655 8999999999998 65 455 68899999999999999984 4


Q ss_pred             CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccc
Q 048681          167 PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV  214 (266)
Q Consensus       167 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~  214 (266)
                      + .+.                           .+++|+.|++++|.+.
T Consensus       175 ~-~l~---------------------------~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          175 R-GIE---------------------------DFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             T-TGG---------------------------GCSSCCEEEECBC---
T ss_pred             H-Hhc---------------------------cCCCCCEEEeeCcccC
Confidence            3 221                           2688999999999886

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.60  E-value=1.2e-17  Score=150.07  Aligned_cols=257  Identities=15%  Similarity=0.079  Sum_probs=129.5

Q ss_pred             CCCCCcEEECCCccCccC----CChhhhcCCCCcEEeccCCcccccCCCCcc---hhhcccccccccccchh---hhhcc
Q 048681            9 RLRNLQELHMGANDLRGT----LPWCLENITSLKVLDLYLNQLTRNISSSPL---LHLITSIEYLSTLNYLV---LVSML   78 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~~~~~~L~~L~~~~~~~---~~~~~   78 (266)
                      ++++|++|++++|.+.+.    ++..+..+++|++|++++|.+++.... .+   ...+++|+.|++.+|..   +..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK-DLETIARNCRSLVSVKVGDFEILELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH-HHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH-HHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence            677788888888876654    223445667777777777776521111 11   12236777777776651   11111


Q ss_pred             CCCCccee------------------------------cccCcccccCcccccCccEEEccCccccccCCccccccCCCC
Q 048681           79 HFPNSFTI------------------------------TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRL  128 (266)
Q Consensus        79 ~~~~~~~~------------------------------~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  128 (266)
                      .++.+...                              ......+|..+..+++|++|++++|.+++.....+...+++|
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            11211111                              111233455566777888888888876543222222336667


Q ss_pred             cEEEcccccccccCCccccCCCCCCEEEccC-----------Ceee-------------------------ecCCccccc
Q 048681          129 MYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH-----------NQLT-------------------------GEIPKHLAI  172 (266)
Q Consensus       129 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----------n~~~-------------------------~~~~~~~~~  172 (266)
                      +.|++..+.....++.....+++|+.|++++           +.++                         +..+..+..
T Consensus       321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            7776663222212222233455566666652           3333                         222222222


Q ss_pred             cccchhHHHhhhcc-ccccccc------CCCCcCCCCccEEEccCCc--ccccCCcccc-ccccCCeeeccccccccc--
Q 048681          173 GCFNLEYLVESLMF-TTKETSY------SYKGKPLNKMYGIDLSCNK--LVGEIPPQIG-KLTRVRALNLSHNNLTGV--  240 (266)
Q Consensus       173 ~~~~l~~l~~~~~~-~~~~~~~------~~~~~~~~~L~~L~L~~n~--i~~~~~~~~~-~l~~L~~L~l~~n~l~~~--  240 (266)
                      .+.+++.+++..+. .+.+...      ......+++|+.|++++|.  +++..+..+. .+++|+.|++++|.+++.  
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence            23333333332111 0111100      0001236677778776543  4544444443 377888888888887642  


Q ss_pred             ---------CCeEEeeCCeeeec-CChhhhhcccCC
Q 048681          241 ---------IPSLDVSYNNLNGK-IPPQLVELNALA  266 (266)
Q Consensus       241 ---------~~~l~l~~n~i~~~-~p~~~~~~~~l~  266 (266)
                               +..|++++|.+++. ++..+..+++|+
T Consensus       481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  516 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR  516 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred             HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence                     33889999887654 344345565553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.3e-15  Score=113.54  Aligned_cols=136  Identities=20%  Similarity=0.158  Sum_probs=97.8

Q ss_pred             CCCCCcEEECCCccCc-cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681            9 RLRNLQELHMGANDLR-GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT   87 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~   87 (266)
                      ..++|++|++++|.+. +.+|..|..+++|++|++++|.+++.  . .+..+ ++|++|++++|....            
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l-~~L~~L~Ls~N~l~~------------   85 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKL-PKLKKLELSENRIFG------------   85 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCC-SSCCEEEEESCCCCS------------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccC-CCCCEEECcCCcCch------------
Confidence            4578999999999987 56788888899999999999998754  3 66666 788888888776411            


Q ss_pred             ccCcccccCcccccCccEEEccCccccccCC--ccccccCCCCcEEEcccccccccCC---ccccCCCCCCEEEccCCee
Q 048681           88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIP--LEIGVYFPRLMYLNLSRNEFDGSIP---SSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~~  162 (266)
                          .+|..+..+++|++|++++|.++ .++  ..+. .+++|+.|++++|.+....+   ..+..+++|+.|++++|..
T Consensus        86 ----~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           86 ----GLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ----CCCHHHHHCTTCCEEECBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ----HHHHHHhhCCCCCEEeccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence                13344555778888888888876 333  3333 37788888888888763332   2677788888888888877


Q ss_pred             eecCC
Q 048681          163 TGEIP  167 (266)
Q Consensus       163 ~~~~~  167 (266)
                      . .+|
T Consensus       160 ~-~~~  163 (168)
T 2ell_A          160 Q-EAP  163 (168)
T ss_dssp             C-BCC
T ss_pred             h-hcc
Confidence            6 444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=7.7e-15  Score=113.20  Aligned_cols=132  Identities=20%  Similarity=0.143  Sum_probs=94.4

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      ++++++++.++ .+|..+..  ++++|++++|.+++..+...+..+ ++|++|++++|.+..                ..
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N~l~~----------------~~   70 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTG----------------IE   70 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCC----------------BC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccC-CCCCEEECCCCCCCC----------------cC
Confidence            78999999987 55665543  899999999999865443135565 788888888776311                12


Q ss_pred             ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC
Q 048681           94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI  166 (266)
Q Consensus        94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  166 (266)
                      |..+..+++|++|++++|++++..+..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus        71 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           71 PNAFEGASHIQELQLGENKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TTTTTTCTTCCEEECCSCCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             HhHcCCcccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            44566777888888888888744333343 3778888888888887667777888888888888888877543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=1.6e-14  Score=108.82  Aligned_cols=134  Identities=20%  Similarity=0.177  Sum_probs=87.4

Q ss_pred             CCCCcEEeccCCccc-ccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCcc
Q 048681           34 ITSLKVLDLYLNQLT-RNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKF  112 (266)
Q Consensus        34 l~~L~~L~l~~n~i~-~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~  112 (266)
                      .++|++|++++|.++ +.+|. .+..                                         +++|++|++++|.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~-~~~~-----------------------------------------l~~L~~L~l~~n~   60 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEG-LTAE-----------------------------------------FVNLEFLSLINVG   60 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSS-CCGG-----------------------------------------GGGCCEEEEESSC
T ss_pred             cccCCEEECCCCCCChhhHHH-HHHh-----------------------------------------CCCCCEEeCcCCC
Confidence            477888999988887 44554 3333                                         3556666666666


Q ss_pred             ccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC--ccccccccchhHHHhhhcccccc
Q 048681          113 FQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP--KHLAIGCFNLEYLVESLMFTTKE  190 (266)
Q Consensus       113 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~  190 (266)
                      +++ + ..+.. +++|+.|++++|.+...+|..+..+++|+.|++++|++++ ++  ..+                    
T Consensus        61 l~~-~-~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l--------------------  116 (168)
T 2ell_A           61 LIS-V-SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPL--------------------  116 (168)
T ss_dssp             CCC-C-SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGG--------------------
T ss_pred             CCC-h-hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHH--------------------
Confidence            653 3 33333 6777777777777765466666667778888888777763 32  111                    


Q ss_pred             cccCCCCcCCCCccEEEccCCcccccCC---ccccccccCCeeeccccccccc
Q 048681          191 TSYSYKGKPLNKMYGIDLSCNKLVGEIP---PQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       191 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                             ..++.|+.|++++|.+++..+   ..+..+++|++|++.+|.+...
T Consensus       117 -------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          117 -------KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             -------SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             -------hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence                   125677888888888774333   2677788888888877776643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1.6e-16  Score=141.96  Aligned_cols=179  Identities=19%  Similarity=0.185  Sum_probs=134.8

Q ss_pred             CccccCCCCCcEEECCCcc-------------CccCCChhhhcCCCCcEEe-ccCCcccccCCCC-----cchhh-cccc
Q 048681            4 ISGLFRLRNLQELHMGAND-------------LRGTLPWCLENITSLKVLD-LYLNQLTRNISSS-----PLLHL-ITSI   63 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~-l~~n~i~~~~~~~-----~~~~~-~~~L   63 (266)
                      |+.+.++++|++|++++|.             ..+..|..+..+++|+.|+ ++.|.+.. ++..     .+..+ ...|
T Consensus       365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L  443 (567)
T 1dce_A          365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVLKMEYADV  443 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-hhhhhhhcccccccCccCc
Confidence            5667888899999997775             5566788889999999998 66665431 1100     01111 1356


Q ss_pred             cccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCC
Q 048681           64 EYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIP  143 (266)
Q Consensus        64 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  143 (266)
                      +.|++++|.+                 ..+|. +..+++|+.|++++|.++ .+|..+.. +++|+.|++++|.+++ +|
T Consensus       444 ~~L~Ls~n~l-----------------~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~~-lp  502 (567)
T 1dce_A          444 RVLHLAHKDL-----------------TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALEN-VD  502 (567)
T ss_dssp             SEEECTTSCC-----------------SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCCC-CG
T ss_pred             eEEEecCCCC-----------------CCCcC-ccccccCcEeecCccccc-ccchhhhc-CCCCCEEECCCCCCCC-Cc
Confidence            6777777653                 34565 788999999999999998 88887776 9999999999999984 66


Q ss_pred             ccccCCCCCCEEEccCCeeeecC-CccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCc---
Q 048681          144 SSIGDLNSLKFLDLSHNQLTGEI-PKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPP---  219 (266)
Q Consensus       144 ~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~---  219 (266)
                       .+..+++|+.|++++|++++.. |..+.                           .+++|+.|++++|.+++..+.   
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~---------------------------~l~~L~~L~L~~N~l~~~~~~~~~  554 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLV---------------------------SCPRLVLLNLQGNSLCQEEGIQER  554 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGG---------------------------GCTTCCEEECTTSGGGGSSSCTTH
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHh---------------------------cCCCCCEEEecCCcCCCCccHHHH
Confidence             8899999999999999998654 65553                           378999999999999954332   


Q ss_pred             cccccccCCeeec
Q 048681          220 QIGKLTRVRALNL  232 (266)
Q Consensus       220 ~~~~l~~L~~L~l  232 (266)
                      .+..+++|+.|++
T Consensus       555 l~~~lp~L~~L~l  567 (567)
T 1dce_A          555 LAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHCTTCSEEEC
T ss_pred             HHHHCcccCccCC
Confidence            2344788998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=7.4e-15  Score=108.50  Aligned_cols=129  Identities=18%  Similarity=0.114  Sum_probs=73.4

Q ss_pred             CCCCCcEEECCCccCc-cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681            9 RLRNLQELHMGANDLR-GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT   87 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~   87 (266)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  . .+..+ ++|++|++++|.+..            
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l-~~L~~L~Ls~n~i~~------------   78 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-NLPKL-NKLKKLELSDNRVSG------------   78 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-TCCCC-TTCCEEECCSSCCCS------------
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-hhhcC-CCCCEEECCCCcccc------------
Confidence            4578999999999998 67788888999999999999998753  3 45554 555555555554210            


Q ss_pred             ccCcccccCcccccCccEEEccCcccccc-CCccccccCCCCcEEEcccccccccCC---ccccCCCCCCEEEcc
Q 048681           88 MSWRPFRMPIQSHWHLATLYVSKKFFQGN-IPLEIGVYFPRLMYLNLSRNEFDGSIP---SSIGDLNSLKFLDLS  158 (266)
Q Consensus        88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  158 (266)
                          .+|..+..+++|++|++++|.+++. .+..+.. +++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        79 ----~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           79 ----GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ----CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG-CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ----hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh-CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                0222233344555555555555421 1122222 4455555555555542222   234445555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=9.2e-14  Score=107.22  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=59.0

Q ss_pred             cEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccC
Q 048681           38 KVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNI  117 (266)
Q Consensus        38 ~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~  117 (266)
                      ++++++++.++ .+|. .+   +++++.|++++|.+                 ..+|..+..+++|++|++++|.++ .+
T Consensus        13 ~~l~~~~~~l~-~ip~-~~---~~~l~~L~L~~n~i-----------------~~ip~~~~~l~~L~~L~Ls~N~i~-~i   69 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPK-GI---PRDVTELYLDGNQF-----------------TLVPKELSNYKHLTLIDLSNNRIS-TL   69 (193)
T ss_dssp             TEEECTTSCCS-SCCS-CC---CTTCCEEECCSSCC-----------------CSCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred             CEEEcCCCCCC-cCCC-CC---CCCCCEEECCCCcC-----------------chhHHHhhcccCCCEEECCCCcCC-Ee
Confidence            67888888887 4665 33   24566666665543                 233444555566666666666665 33


Q ss_pred             CccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681          118 PLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus       118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                      +...+..+++|+.|++++|.++...+..+..+++|+.|++++|+++
T Consensus        70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence            3333333556666666666665444455556666666666666665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.8e-14  Score=109.49  Aligned_cols=135  Identities=15%  Similarity=0.141  Sum_probs=99.2

Q ss_pred             CCccccCCCCCcEEECCCccCccCCChhhhcCC-CCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCC
Q 048681            3 SISGLFRLRNLQELHMGANDLRGTLPWCLENIT-SLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFP   81 (266)
Q Consensus         3 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~   81 (266)
                      +.+.+.++++|++|++++|.+.. +|. +..+. +|++|++++|.+++.  . .+..+ ++|++|++++|.+        
T Consensus        11 ~~~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~-~l~~l-~~L~~L~Ls~N~l--------   76 (176)
T 1a9n_A           11 QAAQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--D-GFPLL-RRLKTLLVNNNRI--------   76 (176)
T ss_dssp             TSCEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--C-CCCCC-SSCCEEECCSSCC--------
T ss_pred             HHHhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--c-ccccC-CCCCEEECCCCcc--------
Confidence            44667889999999999999994 454 55554 999999999999864  3 56666 7888888888763        


Q ss_pred             CcceecccCcccccC-cccccCccEEEccCccccccCCc--cccccCCCCcEEEcccccccccCCcc----ccCCCCCCE
Q 048681           82 NSFTITMSWRPFRMP-IQSHWHLATLYVSKKFFQGNIPL--EIGVYFPRLMYLNLSRNEFDGSIPSS----IGDLNSLKF  154 (266)
Q Consensus        82 ~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~  154 (266)
                               ..+|.. +..+++|++|++++|.++ .+|.  .+.. +++|+.|++++|.+. ..|..    +..+++|+.
T Consensus        77 ---------~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           77 ---------CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLAS-LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             ---------CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGG-CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             ---------cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhc-CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence                     223333 366778888888888886 5554  3443 778888888888886 45553    777888888


Q ss_pred             EEccCCeee
Q 048681          155 LDLSHNQLT  163 (266)
Q Consensus       155 L~l~~n~~~  163 (266)
                      |+++.|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            888877665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.53  E-value=6.7e-16  Score=138.79  Aligned_cols=221  Identities=15%  Similarity=0.019  Sum_probs=105.4

Q ss_pred             ccCCCCCcEEECCCccCc---cCCChh------------hhcCCCCcEEeccCCcccccCCCCcchhhccc-cccccccc
Q 048681            7 LFRLRNLQELHMGANDLR---GTLPWC------------LENITSLKVLDLYLNQLTRNISSSPLLHLITS-IEYLSTLN   70 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~---~~~~~~------------~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~-L~~L~~~~   70 (266)
                      +.++++|+.|+++++...   +..|..            +..+++|++|++++|.+++..+. .+...++. |++|++++
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEEEES
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEEECcC
Confidence            356888999999876321   122222            22789999999999988765544 45553355 99999988


Q ss_pred             chhh--hhc----cCCCCcceecccCccc--------ccCcccccCccEEEccCccccc----cCCccccccCCCCcEEE
Q 048681           71 YLVL--VSM----LHFPNSFTITMSWRPF--------RMPIQSHWHLATLYVSKKFFQG----NIPLEIGVYFPRLMYLN  132 (266)
Q Consensus        71 ~~~~--~~~----~~~~~~~~~~~~~~~l--------~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~~L~~L~  132 (266)
                      |...  ..+    ..++++..++.+...+        +.....+++|++|+++.|.+++    .++..+ ..+++|+.|+
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~  226 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVK  226 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEE
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEe
Confidence            7621  111    1223332222222221        1112233444444444444431    111111 1144444555


Q ss_pred             cccccccccCCccccCCCCCCEEEccCCeeeecCC--ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccC
Q 048681          133 LSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP--KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSC  210 (266)
Q Consensus       133 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  210 (266)
                      +.+|.+. .++..+..+++|+.|+++.........  ......+.+++.+.+....   ....+.....+++|+.|++++
T Consensus       227 L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~l~~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          227 VGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG---PNEMPILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             CSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC---TTTGGGGGGGGGGCCEEEETT
T ss_pred             ccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc---hhHHHHHHhhcCCCcEEecCC
Confidence            5444443 233444444445544444321110000  0011222333333332221   111222223466788888888


Q ss_pred             CcccccCC-ccccccccCCeeecc
Q 048681          211 NKLVGEIP-PQIGKLTRVRALNLS  233 (266)
Q Consensus       211 n~i~~~~~-~~~~~l~~L~~L~l~  233 (266)
                      |.+++... ..+..+++|++|++.
T Consensus       303 ~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          303 ALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             CcCCHHHHHHHHHhCcCCCEEecc
Confidence            77654332 335677788888877

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1.7e-13  Score=104.08  Aligned_cols=63  Identities=27%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681          100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus       100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                      +++|++|++++|.++ .+++..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus        51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence            355666677776666 444444334667777777777776444445666777777777777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=5.1e-16  Score=139.53  Aligned_cols=54  Identities=15%  Similarity=0.250  Sum_probs=33.2

Q ss_pred             CCCccEEEccCCcccccCCccccc-cccCCeeeccccccccc-----------CCeEEeeCCeeeec
Q 048681          200 LNKMYGIDLSCNKLVGEIPPQIGK-LTRVRALNLSHNNLTGV-----------IPSLDVSYNNLNGK  254 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~-----------~~~l~l~~n~i~~~  254 (266)
                      +++|+.|++++ .+++..+..+.. +++|+.|++++|.+++.           +..|++++|.+++.
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence            45666666655 444333334443 67788888877777532           33788888887543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=6.3e-14  Score=103.44  Aligned_cols=105  Identities=20%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             cccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC-Cccccccccch
Q 048681           99 SHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI-PKHLAIGCFNL  177 (266)
Q Consensus        99 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~l  177 (266)
                      .+++|++|++++|.+++ + ..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|++++.. +..+       
T Consensus        40 ~l~~L~~L~l~~n~l~~-~-~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~-------  109 (149)
T 2je0_A           40 EFEELEFLSTINVGLTS-I-ANLPK-LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL-------  109 (149)
T ss_dssp             TCTTCCEEECTTSCCCC-C-TTCCC-CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG-------
T ss_pred             hcCCCcEEECcCCCCCC-c-hhhhc-CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH-------
Confidence            34566666776666663 2 33333 667777777777776546666666777777777777776311 1111       


Q ss_pred             hHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC---ccccccccCCeeecc
Q 048681          178 EYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP---PQIGKLTRVRALNLS  233 (266)
Q Consensus       178 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~  233 (266)
                                          ..++.|+.|++++|.+++..+   ..+..+++|+.|+++
T Consensus       110 --------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          110 --------------------KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             --------------------GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             --------------------hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                                125677888888888774433   356777888887765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.4e-13  Score=104.48  Aligned_cols=134  Identities=20%  Similarity=0.147  Sum_probs=81.7

Q ss_pred             hhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEcc
Q 048681           30 CLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVS  109 (266)
Q Consensus        30 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~  109 (266)
                      .+.++.+|++|++++|.++. ++  .+....                                        ++|++|+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~--~~~~~~----------------------------------------~~L~~L~Ls   50 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IE--NLGATL----------------------------------------DQFDAIDFS   50 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CC--CGGGGT----------------------------------------TCCSEEECC
T ss_pred             hcCCcCCceEEEeeCCCCch-hH--HhhhcC----------------------------------------CCCCEEECC
Confidence            46678899999999998873 43  344432                                        245566666


Q ss_pred             CccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCc--cccccccchhHHHhhhccc
Q 048681          110 KKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK--HLAIGCFNLEYLVESLMFT  187 (266)
Q Consensus       110 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~~l~~l~~~~~~~  187 (266)
                      +|.+++ + ..+.. +++|++|++++|.++...+..+..+++|+.|++++|+++ .+|.  .+                 
T Consensus        51 ~N~l~~-~-~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l-----------------  109 (176)
T 1a9n_A           51 DNEIRK-L-DGFPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPL-----------------  109 (176)
T ss_dssp             SSCCCE-E-CCCCC-CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGG-----------------
T ss_pred             CCCCCc-c-ccccc-CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhh-----------------
Confidence            666552 2 23333 666777777777766333333466677777777777665 3332  11                 


Q ss_pred             ccccccCCCCcCCCCccEEEccCCcccccCCcc----ccccccCCeeeccccccc
Q 048681          188 TKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ----IGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       188 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~  238 (266)
                                ..++.|+.|++++|.++ .+|..    +..+++|+.|++++|...
T Consensus       110 ----------~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          110 ----------ASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ----------GGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ----------hcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence                      12566777777777776 45553    666777777777777655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=8.9e-13  Score=101.65  Aligned_cols=127  Identities=20%  Similarity=0.212  Sum_probs=99.8

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      +.++++++.+. .+|..+.  ++|++|++++|.|+ .+|. .+..+ ++|++|++++|.+                 ..+
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l-~~L~~L~Ls~N~i-----------------~~i   69 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPK-ELSNY-KHLTLIDLSNNRI-----------------STL   69 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCG-GGGGC-TTCCEEECCSSCC-----------------CCC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHH-Hhhcc-cCCCEEECCCCcC-----------------CEe
Confidence            57888888888 4555443  58889999999887 5775 77777 8888898888874                 122


Q ss_pred             -ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           94 -RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        94 -~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                       +..+..+++|++|++++|+++ .+++..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus        70 ~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           70 SNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence             234677889999999999998 5555444458999999999999985555678899999999999999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=8.1e-16  Score=119.29  Aligned_cols=62  Identities=23%  Similarity=0.285  Sum_probs=43.4

Q ss_pred             ccCCCCCcEEECCCccCccCCCh------hhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681            7 LFRLRNLQELHMGANDLRGTLPW------CLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~------~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      +.....++.++++.+.+.+..|.      .|..+++|++|++++|.+++ +|  .+..+ ++|++|++++|.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l-~~L~~L~l~~n~   81 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGM-ENLRILSLGRNL   81 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHH-TTCCEEEEEEEE
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccC-CCCCEEECCCCC
Confidence            45566777777888877777666      88889999999999998875 44  45555 555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.45  E-value=6.6e-13  Score=100.83  Aligned_cols=130  Identities=20%  Similarity=0.188  Sum_probs=97.6

Q ss_pred             CcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681           13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP   92 (266)
Q Consensus        13 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (266)
                      .+.++++++.+.. +|..+  .++|++|++++|.+++..+. .+..+ ++|++|++++|..                 ..
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~l-----------------~~   66 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHG-VFDKL-TQLTKLSLSQNQI-----------------QS   66 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTT-TTTTC-TTCSEEECCSSCC-----------------CC
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHH-HhcCc-ccccEEECCCCcc-----------------eE
Confidence            4678888888874 44433  36888888888888753333 55666 8888888888764                 12


Q ss_pred             cc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeec
Q 048681           93 FR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGE  165 (266)
Q Consensus        93 l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  165 (266)
                      ++ ..+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus        67 ~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           67 LPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             eChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            22 23567889999999999998 55655544589999999999999855555568899999999999998743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=6.1e-13  Score=111.08  Aligned_cols=213  Identities=12%  Similarity=0.038  Sum_probs=107.3

Q ss_pred             CCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCC--------C
Q 048681           10 LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF--------P   81 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~--------~   81 (266)
                      +++|+++++.. .++.+.+.+|.++++|+++++.+|.++. ++...|... .++..+.............+        .
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~-~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADS-VTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTT-TCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCC-CceEEecCcchhhhhcccccccccccccc
Confidence            99999999999 8888888899999999999999999874 554366665 67777666553321111110        1


Q ss_pred             Ccce--ecccCcccccC----cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEE
Q 048681           82 NSFT--ITMSWRPFRMP----IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFL  155 (266)
Q Consensus        82 ~~~~--~~~~~~~l~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  155 (266)
                      .+..  .......++..    -....+++.+.+.++-.. .....+...+++|+.+++..|.+......+|..+.+|+.+
T Consensus       177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            0000  00000001100    001122333333222111 0001111124556666666655553444455566666666


Q ss_pred             EccCCeeeecCCccccccccchh-HHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeee
Q 048681          156 DLSHNQLTGEIPKHLAIGCFNLE-YLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALN  231 (266)
Q Consensus       156 ~l~~n~~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  231 (266)
                      ++.+| ++ .+++..|.+|.+++ .+.+.. ....+....  +..+++|+.+++..|.++...+.+|.++++|+.++
T Consensus       256 ~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a--F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          256 KLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGA--FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTT--TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhh--hhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            66655 43 34444444443333 332222 111111111  12356677777777766644445667777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=6e-13  Score=111.15  Aligned_cols=99  Identities=10%  Similarity=-0.020  Sum_probs=52.3

Q ss_pred             CCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc-EEEccCCcccccCCccccccccC
Q 048681          149 LNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY-GIDLSCNKLVGEIPPQIGKLTRV  227 (266)
Q Consensus       149 l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~l~~L  227 (266)
                      +++|+.+++++|+++ .+++..+..|.+++.+.+..+ ...+....+  ..+..|+ .+++.+ .++...+.+|.+|++|
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF--~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF--SNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTT--TTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHh--hCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence            678888888888877 566666655544444433332 111111111  2234444 444443 2332222334444444


Q ss_pred             CeeecccccccccCCeEEeeCCeeeecCChhhhhcccCC
Q 048681          228 RALNLSHNNLTGVIPSLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       228 ~~L~l~~n~l~~~~~~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      +              .++++.|.+...-+.+|.+|++|+
T Consensus       300 ~--------------~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          300 R--------------YVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             E--------------EEEECSSCCCEECTTTTCTTCCCC
T ss_pred             C--------------EEEeCCCccCccchhhhcCCcchh
Confidence            4              455556666666677889888875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=3.8e-12  Score=96.03  Aligned_cols=109  Identities=24%  Similarity=0.227  Sum_probs=84.5

Q ss_pred             CccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHH
Q 048681          102 HLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLV  181 (266)
Q Consensus       102 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~  181 (266)
                      ..+.+++++|+++ .+|..+   .++++.|++++|.+++..+..+..+++|+.|++++|+++ .++...+.         
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~---------   75 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFD---------   75 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTT---------
T ss_pred             CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhcc---------
Confidence            3578889988887 677655   368899999999998666778888999999999999988 45444321         


Q ss_pred             hhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccC
Q 048681          182 ESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI  241 (266)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  241 (266)
                                       .+++|+.|+|++|.+++..+..|..+++|++|++++|+++...
T Consensus        76 -----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           76 -----------------KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             -----------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             -----------------CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence                             2678888999999888544556888888999999888887554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.36  E-value=1e-14  Score=131.01  Aligned_cols=63  Identities=11%  Similarity=0.035  Sum_probs=31.1

Q ss_pred             CCCCCcEEECCCccCccCCChhhh-cCCCCcEEeccCC-cccccCCCCcchhhcccccccccccch
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLE-NITSLKVLDLYLN-QLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ++++|++|++++|.++...+..+. .+++|++|++++| .++..... .+...+++|++|++++|.
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA-AIAATCRNLKELDLRESD  167 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH-HHHHHCTTCCEEECTTCE
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH-HHHHhCCCCCEEeCcCCc
Confidence            455666666666655544444443 4566666666655 33321111 222222556666665554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=1.7e-14  Score=122.45  Aligned_cols=61  Identities=15%  Similarity=0.090  Sum_probs=32.2

Q ss_pred             CCCcEEECCCccCccCCChhhhcC-----CCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681           11 RNLQELHMGANDLRGTLPWCLENI-----TSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      ++|++|++++|.++......++.+     ++|++|++++|.++..... .+...+.+|+.|++++|.
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~L~~L~Ls~n~  137 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR-TLLPVFLRARKLGLQLNS  137 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHH-HTHHHHHTEEEEECCSSC
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHH-HHHHHHHhccHhhcCCCC
Confidence            456777777777665444444433     5677777777766543222 222222344444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=6.3e-12  Score=95.23  Aligned_cols=109  Identities=20%  Similarity=0.216  Sum_probs=84.8

Q ss_pred             ccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHh
Q 048681          103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVE  182 (266)
Q Consensus       103 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~  182 (266)
                      -+.+++++++++ .+|..+.   ++|+.|++++|.+.+..|..+..+++|+.|++++|+++ .+|...+           
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-----------   77 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVF-----------   77 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-----------
T ss_pred             CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHh-----------
Confidence            367888888886 7777653   68999999999998666788889999999999999988 4554432           


Q ss_pred             hhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          183 SLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                                     ..++.|+.|+|++|.+++..+..|..+++|++|++++|++....+
T Consensus        78 ---------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           78 ---------------DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             ---------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ---------------CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence                           126788899999999885444458888899999999998875543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=1e-11  Score=93.68  Aligned_cols=106  Identities=21%  Similarity=0.223  Sum_probs=81.8

Q ss_pred             CcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681           13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP   92 (266)
Q Consensus        13 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (266)
                      .+.+++++|.++. +|..+.  ++|++|++++|.|++..+. .|.                                   
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~-~~~-----------------------------------   51 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPG-VFD-----------------------------------   51 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTT-TTT-----------------------------------
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChh-hhc-----------------------------------
Confidence            4678888888884 555443  7888888888888754444 343                                   


Q ss_pred             cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           93 FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        93 l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                            .+++|++|++++|+++ .+++..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus        52 ------~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           52 ------RLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             ------TCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ------CcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence                  3467888888888888 6676665558999999999999985555678899999999999999873

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=1.6e-11  Score=92.96  Aligned_cols=104  Identities=21%  Similarity=0.226  Sum_probs=79.6

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      +.++++++.+. .+|..+.  ++|++|++++|.|++..|. .|                                     
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~-~~-------------------------------------   53 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPG-VF-------------------------------------   53 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTT-TT-------------------------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHH-Hh-------------------------------------
Confidence            67788888876 4555543  7788888888888754443 33                                     


Q ss_pred             ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681           94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus        94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                          ..+++|++|++++|+++ .+|...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus        54 ----~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           54 ----DHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ----TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ----cCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence                34467888888888887 677766555899999999999998554556889999999999999987

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=8.8e-14  Score=107.71  Aligned_cols=127  Identities=21%  Similarity=0.232  Sum_probs=96.2

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT   85 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~   85 (266)
                      .|.++++|++|++++|.+.. +| .|..+++|++|++++|.++ .+|. .+..+ ++|+.|++++|..            
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~-~~L~~L~L~~N~l------------  105 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVA-DTLEELWISYNQI------------  105 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHH-HHCSEEEEEEEEC------------
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhcC-CcCCEEECcCCcC------------
Confidence            78899999999999999996 56 8999999999999999998 5776 56565 8889998888863            


Q ss_pred             ecccCcccccCcccccCccEEEccCccccccCCc-cccccCCCCcEEEcccccccccCCc----------cccCCCCCCE
Q 048681           86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPL-EIGVYFPRLMYLNLSRNEFDGSIPS----------SIGDLNSLKF  154 (266)
Q Consensus        86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~  154 (266)
                           ..+| .+..+++|++|++++|.++ .++. .....+++|+.|++++|.+....|.          .+..+++|+.
T Consensus       106 -----~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          106 -----ASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             -----CCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             -----CcCC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence                 1222 3566778888888888887 3332 2223377888888888888644333          2667788888


Q ss_pred             EE
Q 048681          155 LD  156 (266)
Q Consensus       155 L~  156 (266)
                      |+
T Consensus       179 Ld  180 (198)
T 1ds9_A          179 LD  180 (198)
T ss_dssp             EC
T ss_pred             EC
Confidence            76

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.23  E-value=1.1e-10  Score=100.04  Aligned_cols=220  Identities=8%  Similarity=0.018  Sum_probs=127.2

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch---hhhhccCCCC
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL---VLVSMLHFPN   82 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~---~~~~~~~~~~   82 (266)
                      +|.++ +|+.+.+..+ +..+...+|.+ .+|+.+.+.. .++ .++...|..+ ++|+.+++..+.   +....+....
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c-~~L~~l~l~~n~l~~I~~~aF~~~~  204 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYC-YNLKKADLSKTKITKLPASTFVYAG  204 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTC-TTCCEEECTTSCCSEECTTTTTTCC
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCc-ccCCeeecCCCcceEechhhEeecc
Confidence            44443 5666666554 45455556655 3566666654 344 2333244444 666666665543   2222222222


Q ss_pred             cce--ecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681           83 SFT--ITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH  159 (266)
Q Consensus        83 ~~~--~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  159 (266)
                      +..  .-.+...++ ..|..+++|+.+.+..+ ++ .++...+.. ++|+.+.+.. .+......+|..+++|+.+.+.+
T Consensus       205 L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          205 IEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             CSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEES
T ss_pred             cCEEEeCCchheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCC
Confidence            211  111122232 34667778888888764 43 566666653 6888888843 44435567788888888888887


Q ss_pred             Ceee----ecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccc
Q 048681          160 NQLT----GEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHN  235 (266)
Q Consensus       160 n~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  235 (266)
                      +.+.    ..++...+.+|.+++.+.+.. ....+....  +..+..|+.+.+..+ ++.....+|.++ +|+.+++.+|
T Consensus       281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a--F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL--LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT--TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred             ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh--hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence            7653    135566667777777766652 222333333  334788888888655 553445678888 8888888888


Q ss_pred             ccccc
Q 048681          236 NLTGV  240 (266)
Q Consensus       236 ~l~~~  240 (266)
                      .+...
T Consensus       356 ~~~~l  360 (401)
T 4fdw_A          356 TPPQV  360 (401)
T ss_dssp             SCCBC
T ss_pred             CCccc
Confidence            76643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=1.8e-13  Score=116.10  Aligned_cols=167  Identities=14%  Similarity=0.115  Sum_probs=110.8

Q ss_pred             CCCCcEEeccCCcccccCCCCcchhh----cccccccccccchhhh-hccCCCCcceecccCcccccCcccccCccEEEc
Q 048681           34 ITSLKVLDLYLNQLTRNISSSPLLHL----ITSIEYLSTLNYLVLV-SMLHFPNSFTITMSWRPFRMPIQSHWHLATLYV  108 (266)
Q Consensus        34 l~~L~~L~l~~n~i~~~~~~~~~~~~----~~~L~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l  108 (266)
                      +++|++|++++|.++..... .+...    +..|++|++++|.+.. .+..                -...+.+|++|++
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~----------------l~~~L~~L~~L~L  133 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCT-VVAAVLGSGRHALDEVNLASCQLDPAGLRT----------------LLPVFLRARKLGL  133 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHH-HHHHHHSSCSSCEEEEECTTCCCCHHHHHH----------------THHHHHTEEEEEC
T ss_pred             HhhCCEEEecCCCCCHHHHH-HHHHHHhhCCCCceEEEecCCCCCHHHHHH----------------HHHHHHhccHhhc
Confidence            47899999999998754333 33333    2588899999887311 1111                1123457899999


Q ss_pred             cCccccccCCcccc----ccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeecCCccccccccchhHH
Q 048681          109 SKKFFQGNIPLEIG----VYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL  180 (266)
Q Consensus       109 ~~n~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l  180 (266)
                      ++|.+++.....+.    ...++|++|++++|.++..    ++..+...++|++|++++|++++.....+...+      
T Consensus       134 s~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L------  207 (372)
T 3un9_A          134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL------  207 (372)
T ss_dssp             CSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG------
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH------
Confidence            99988743323322    2257899999999988632    445557788899999999988742211111110      


Q ss_pred             HhhhcccccccccCCCCcCCCCccEEEccCCccccc----CCccccccccCCeeeccccccccc
Q 048681          181 VESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE----IPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                                       ...+.|+.|+|++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       208 -----------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          208 -----------------DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             -----------------GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             -----------------hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence                             1246899999999999753    334455678999999999998844

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.16  E-value=4.2e-10  Score=96.30  Aligned_cols=218  Identities=13%  Similarity=0.106  Sum_probs=141.4

Q ss_pred             cccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch--hhhhc-cCCCC
Q 048681            6 GLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL--VLVSM-LHFPN   82 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~--~~~~~-~~~~~   82 (266)
                      +|.++ +|+++.+.. .+..+.+.+|.++.+|+.+++.+|.++ .++...|. . .+|+.+.+..+.  +.... ..+++
T Consensus       153 aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~-~~L~~l~lp~~l~~I~~~aF~~~~~  227 (401)
T 4fdw_A          153 AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-Y-AGIEEVLLPVTLKEIGSQAFLKTSQ  227 (401)
T ss_dssp             TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-T-CCCSEEECCTTCCEECTTTTTTCTT
T ss_pred             hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-e-cccCEEEeCCchheehhhHhhCCCC
Confidence            45553 688888876 566667778888888888888888777 45552443 4 777777776544  11111 22222


Q ss_pred             cce--ecccCccccc-CcccccCccEEEccCccccccCCccccccCCCCcEEEccccccc-----ccCCccccCCCCCCE
Q 048681           83 SFT--ITMSWRPFRM-PIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFD-----GSIPSSIGDLNSLKF  154 (266)
Q Consensus        83 ~~~--~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~  154 (266)
                      +..  ...+...+.. .|.. .+|+.+.+.+ .++ .++...+..+++|+.+.+.++.+.     ......|..+++|+.
T Consensus       228 L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~  304 (401)
T 4fdw_A          228 LKTIEIPENVSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR  304 (401)
T ss_dssp             CCCEECCTTCCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred             CCEEecCCCccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence            222  1112333333 2333 6788888844 454 566666666889999999887664     245678889999999


Q ss_pred             EEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccc-cCCeeecc
Q 048681          155 LDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLT-RVRALNLS  233 (266)
Q Consensus       155 L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~  233 (266)
                      +.+.+ .++ .++...+.+|.+++.+.+... ...+....+  ..+ .|+.+++.+|.+.......|.+++ .++.+++-
T Consensus       305 l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF--~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          305 FEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAF--NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             ECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSS--SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred             EEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhC--CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence            99985 465 677777788888887766432 223333333  346 899999999988754555677774 67888877


Q ss_pred             cccc
Q 048681          234 HNNL  237 (266)
Q Consensus       234 ~n~l  237 (266)
                      .+.+
T Consensus       379 ~~~~  382 (401)
T 4fdw_A          379 AESV  382 (401)
T ss_dssp             GGGH
T ss_pred             HHHH
Confidence            6643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=8.4e-10  Score=92.56  Aligned_cols=96  Identities=20%  Similarity=0.208  Sum_probs=72.4

Q ss_pred             cCcccccCcccccCccEEEccC-ccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC
Q 048681           89 SWRPFRMPIQSHWHLATLYVSK-KFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP  167 (266)
Q Consensus        89 ~~~~l~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  167 (266)
                      .+..+|. +..+++|++|++++ |.++ .+++..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|+++ .+|
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLS   96 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeC
Confidence            4566788 88888889999986 8887 555444444888999999999888777778888889999999999887 455


Q ss_pred             ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccc
Q 048681          168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLV  214 (266)
Q Consensus       168 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~  214 (266)
                      ...+.                          .++ |+.|+|.+|.+.
T Consensus        97 ~~~~~--------------------------~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           97 WKTVQ--------------------------GLS-LQELVLSGNPLH  116 (347)
T ss_dssp             STTTC--------------------------SCC-CCEEECCSSCCC
T ss_pred             HHHcc--------------------------cCC-ceEEEeeCCCcc
Confidence            44431                          122 888999998887

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.00  E-value=1.2e-09  Score=91.62  Aligned_cols=33  Identities=21%  Similarity=0.217  Sum_probs=21.2

Q ss_pred             EEECCCc-cCccCCChhhhcCCCCcEEeccC-Ccccc
Q 048681           15 ELHMGAN-DLRGTLPWCLENITSLKVLDLYL-NQLTR   49 (266)
Q Consensus        15 ~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~-n~i~~   49 (266)
                      .++.+++ .++ .+|. |..+++|++|+|++ |.+++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~   46 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQH   46 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCE
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCC
Confidence            4566666 666 3455 66777777777774 66664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=3.7e-09  Score=89.13  Aligned_cols=198  Identities=17%  Similarity=0.179  Sum_probs=114.5

Q ss_pred             CCCCcEEECCCccCcc-C-------CChhhhcCCCCcEEeccCCcccc-----cCCC--Ccchhhcccccccccccchhh
Q 048681           10 LRNLQELHMGANDLRG-T-------LPWCLENITSLKVLDLYLNQLTR-----NISS--SPLLHLITSIEYLSTLNYLVL   74 (266)
Q Consensus        10 l~~L~~L~l~~n~i~~-~-------~~~~~~~l~~L~~L~l~~n~i~~-----~~~~--~~~~~~~~~L~~L~~~~~~~~   74 (266)
                      ...++.|.+..+.+.+ .       +.+++..+++|+.|.+.+.....     ....  ..+...++.|+.|++.++...
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            4456778887665431 1       12345567899999886643210     0000  022223377888887765210


Q ss_pred             hhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCcccc-ccCCCCcEEEcccc--ccccc-----CCccc
Q 048681           75 VSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG-VYFPRLMYLNLSRN--EFDGS-----IPSSI  146 (266)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~~--~~~~~-----~~~~l  146 (266)
                                       .++. + .+++|+.|++..+.+.......+. ..+++|+.|+|+.+  ...+.     +...+
T Consensus       186 -----------------~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          186 -----------------SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             -----------------BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             -----------------eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence                             1111 2 257788888887776533222333 23788888887532  11101     11122


Q ss_pred             --cCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCccccc----CCcc
Q 048681          147 --GDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGE----IPPQ  220 (266)
Q Consensus       147 --~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~  220 (266)
                        ..+++|+.|++.+|++++..+..++.                        ...++.|+.|+|+.|.+.+.    ++..
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~------------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~  302 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLE------------------------SDILPQLETMDISAGVLTDEGARLLLDH  302 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHH------------------------CSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHh------------------------CccCCCCCEEECCCCCCChHHHHHHHhh
Confidence              24688888888888776432222210                        01267899999999988753    3333


Q ss_pred             ccccccCCeeeccccccccc---------CCeEEeeCCe
Q 048681          221 IGKLTRVRALNLSHNNLTGV---------IPSLDVSYNN  250 (266)
Q Consensus       221 ~~~l~~L~~L~l~~n~l~~~---------~~~l~l~~n~  250 (266)
                      +..+++|+.|++++|.++..         ..+++++++.
T Consensus       303 L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          303 VDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             HHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred             cccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence            45678999999999988733         2377887775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.66  E-value=3.1e-07  Score=78.31  Aligned_cols=214  Identities=12%  Similarity=0.025  Sum_probs=96.7

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh--hccCCCC
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV--SMLHFPN   82 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~   82 (266)
                      .+|.++++|+.+.+..+- ..+...+|.++.+|+.+++..+ ++ .++...|..+ ..|+.+.+..+....  .......
T Consensus       156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~-~~L~~i~~~~~~~~i~~~~~~~~~  231 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC-ILLENMEFPNSLYYLGDFALSKTG  231 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC-TTCCBCCCCTTCCEECTTTTTTCC
T ss_pred             hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc-cccceeecCCCceEeehhhcccCC
Confidence            345666667766666543 2245556666666766666554 33 3333244444 666665554443111  1111111


Q ss_pred             cce--ecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 048681           83 SFT--ITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH  159 (266)
Q Consensus        83 ~~~--~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  159 (266)
                      +..  .-.....+. ..+..+..++.+.+..+..  .+....+.....++.+......+   ....+..+.+|+.+.+..
T Consensus       232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred             CceEEECCCceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---cccccccccccccccccc
Confidence            100  000111111 1233445555555544332  22333333344555554443322   123455566666666654


Q ss_pred             CeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecc
Q 048681          160 NQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS  233 (266)
Q Consensus       160 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  233 (266)
                      + ++ .+.+..+..|.+++.+.+... ...+..  .++..+.+|+.+.+..+ ++.....+|.+|.+|+.+++.
T Consensus       307 ~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          307 S-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGK--RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             T-CC-EECTTTTTTCTTCCEECCCTT-CCEECT--TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             c-cc-eechhhhcCCCCCCEEEeCCc-ccEEhH--HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            3 33 344444455555554443211 111111  22233566666666554 442333456666666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=6.3e-09  Score=87.70  Aligned_cols=185  Identities=17%  Similarity=0.149  Sum_probs=112.0

Q ss_pred             ccCCCCCcEEECCCccCc---------cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhc
Q 048681            7 LFRLRNLQELHMGANDLR---------GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSM   77 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~---------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~   77 (266)
                      +.++++|+.|.+......         ..+...+..+++|+.|++++|.-. ..+  .+ .. ++|++|++..+.+....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~--~~-~~-~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIG--KK-PR-PNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCC--SC-BC-TTCSEEEEECSBCCHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eec--cc-cC-CCCcEEEEecCCCChHH
Confidence            456789999998764321         124455677899999999988311 222  22 34 89999999876632111


Q ss_pred             -cCCCCcceecccCcccccCcccccCccEEEccC--cccccc-----CCcccc-ccCCCCcEEEcccccccccCCcccc-
Q 048681           78 -LHFPNSFTITMSWRPFRMPIQSHWHLATLYVSK--KFFQGN-----IPLEIG-VYFPRLMYLNLSRNEFDGSIPSSIG-  147 (266)
Q Consensus        78 -~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~--n~~~~~-----~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~-  147 (266)
                       ..+               ....+++|++|+++.  +...+.     +...+. ..+++|++|++.+|.+....+..+. 
T Consensus       210 l~~l---------------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~  274 (362)
T 2ra8_A          210 VEDI---------------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE  274 (362)
T ss_dssp             HHHH---------------HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH
T ss_pred             HHHH---------------HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh
Confidence             000               012568899998753  221111     111222 2378999999999988633322332 


Q ss_pred             --CCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccc-c
Q 048681          148 --DLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGK-L  224 (266)
Q Consensus       148 --~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-l  224 (266)
                        .+++|+.|+++.|.+++.-...+...+   +                    ++++|+.|++++|.+++.....+.. +
T Consensus       275 a~~~~~L~~LdLs~n~L~d~G~~~L~~~L---~--------------------~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          275 SDILPQLETMDISAGVLTDEGARLLLDHV---D--------------------KIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             CSSGGGCSEEECCSSCCBHHHHHHHHTTH---H--------------------HHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             CccCCCCCEEECCCCCCChHHHHHHHhhc---c--------------------cCCcceEEECCCCcCCHHHHHHHHHHc
Confidence              578999999999988753322222111   1                    2578999999999887554444433 2


Q ss_pred             ccCCeeeccccc
Q 048681          225 TRVRALNLSHNN  236 (266)
Q Consensus       225 ~~L~~L~l~~n~  236 (266)
                        ...++++.+.
T Consensus       332 --g~~~~~~~~~  341 (362)
T 2ra8_A          332 --PMKIDVSDSQ  341 (362)
T ss_dssp             --CSEEECCSBC
T ss_pred             --CCEEEecCCc
Confidence              3556777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.65  E-value=4.8e-07  Score=77.10  Aligned_cols=126  Identities=12%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc-
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS-   83 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~-   83 (266)
                      .+|.++.+|+++.+..+ ++.+...+|.++.+|+++++..+ ++ .++...|..+ .+|+.+.+..+....+..++... 
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c-~~L~~i~~p~~l~~i~~~aF~~~~  140 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGC-YALKSILLPLMLKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTC-TTCCCCCCCTTCCEECTTTTTTCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhccc-ccchhhcccCceeeecceeeeccc
Confidence            46889999999999854 77677889999999999999765 55 4555355555 88887776554421111111111 


Q ss_pred             -ce--ecccCccc-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccc
Q 048681           84 -FT--ITMSWRPF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN  136 (266)
Q Consensus        84 -~~--~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  136 (266)
                       ..  .......+ ...|..+.+|+.+.+.++. . .++...+..+.+|+.+.+..+
T Consensus       141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             CSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT
T ss_pred             ccccccCccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC
Confidence             00  00011111 1235555666666665432 1 344444444555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=5.4e-09  Score=79.77  Aligned_cols=64  Identities=16%  Similarity=0.214  Sum_probs=46.0

Q ss_pred             cccCccEEEccCcccccc----CCccccccCCCCcEEEc--cccccccc----CCccccCCCCCCEEEccCCeee
Q 048681           99 SHWHLATLYVSKKFFQGN----IPLEIGVYFPRLMYLNL--SRNEFDGS----IPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus        99 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                      ..+.|++|++++|.+.+.    +...+.. .+.|++|++  ++|.+...    +...+...++|+.|++++|.++
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~-n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEALQS-NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGG-CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHHHHh-CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            446788888888888743    2333333 568999999  78888633    3455666789999999999886

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.46  E-value=2.5e-06  Score=72.69  Aligned_cols=106  Identities=12%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681          125 FPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY  204 (266)
Q Consensus       125 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~  204 (266)
                      +.+|+.+.+..+... ....++..+++|+.+.+.. .+. .+++..+..|.+++.+.+... ...+..  .++..+.+|+
T Consensus       264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~C~~L~  337 (394)
T 4gt6_A          264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILD--DAFAGCEQLE  337 (394)
T ss_dssp             CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCC
T ss_pred             cccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehH--hHhhCCCCCC
Confidence            345555555443322 3334555566666666643 333 355555566666665544321 112222  2233467777


Q ss_pred             EEEccCCcccccCCccccccccCCeeecccccc
Q 048681          205 GIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNL  237 (266)
Q Consensus       205 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  237 (266)
                      .+.+..+ ++.....+|.+|.+|+.+++.++..
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            7777544 4423334677777777777766543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.45  E-value=2.4e-08  Score=76.14  Aligned_cols=118  Identities=10%  Similarity=0.070  Sum_probs=77.2

Q ss_pred             cccccCccEEEccCc-ccccc----CCccccccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeecCC
Q 048681           97 IQSHWHLATLYVSKK-FFQGN----IPLEIGVYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIP  167 (266)
Q Consensus        97 ~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~  167 (266)
                      +...+.|++|++++| .+.+.    +...+.. .+.|++|++++|.+...    +...+...++|++|++++|.+++.-.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            445678889999888 77642    2222222 56889999999888632    34455666788999999988874322


Q ss_pred             ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEc--cCCccccc----CCccccccccCCeeeccccccc
Q 048681          168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDL--SCNKLVGE----IPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       168 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                      ..+...+                       ...+.|++|+|  ++|.+.+.    +...+...++|++|++++|.+.
T Consensus       111 ~~l~~~L-----------------------~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEAL-----------------------QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGG-----------------------GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHH-----------------------HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2221111                       11467888999  78888754    3344566678888888888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=2.2e-07  Score=74.64  Aligned_cols=18  Identities=50%  Similarity=0.556  Sum_probs=12.8

Q ss_pred             hcCCCCcEEeccCCcccc
Q 048681           32 ENITSLKVLDLYLNQLTR   49 (266)
Q Consensus        32 ~~l~~L~~L~l~~n~i~~   49 (266)
                      .++++|++|+|++|.|++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~  184 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYR  184 (267)
T ss_dssp             HHCTTCCEEECTTSCCCC
T ss_pred             hhCCCCCEEECCCCCCCC
Confidence            456777777777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=2.6e-06  Score=68.42  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=36.8

Q ss_pred             cCCCCCcEEECCCccCccC--CChhhhcCCCCcEEeccCCcccc
Q 048681            8 FRLRNLQELHMGANDLRGT--LPWCLENITSLKVLDLYLNQLTR   49 (266)
Q Consensus         8 ~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~i~~   49 (266)
                      .++++|+.|+|++|.+.+.  +|..+..+++|+.|+|++|.|++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            3689999999999999973  45777899999999999999974

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.08  E-value=0.00022  Score=60.53  Aligned_cols=249  Identities=10%  Similarity=0.072  Sum_probs=127.4

Q ss_pred             ccccCCC-CCcEEECCCccCccCCChhhhcCCCCcEEeccCCc---ccccCCCCcchhhcccccccccccchh--hhhc-
Q 048681            5 SGLFRLR-NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ---LTRNISSSPLLHLITSIEYLSTLNYLV--LVSM-   77 (266)
Q Consensus         5 ~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~~~~~~L~~L~~~~~~~--~~~~-   77 (266)
                      .+|.++. .|+.+.+..+ ++.+...+|.++.+|+++.+..+.   ++ .+...+|..+ .+|+.+.+..+..  .... 
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c-~~L~~i~~~~~~~~I~~~aF  133 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFC-SELTDIPILDSVTEIDSEAF  133 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTC-TTCCBCGGGTTCSEECTTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-Eechhhchhc-ccceeeccCCccceehhhhh
Confidence            4567774 5999999865 676788899999999999998764   54 3555355555 7888777655431  1111 


Q ss_pred             cCCCCcce--ecccCcccc-cCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCE
Q 048681           78 LHFPNSFT--ITMSWRPFR-MPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKF  154 (266)
Q Consensus        78 ~~~~~~~~--~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  154 (266)
                      ..+..+..  .-.....+. ..+..+..|+.+.+..+ +. .+....+. ..+|+.+.+..+... .....+..+.+++.
T Consensus       134 ~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~  209 (394)
T 4gt6_A          134 HHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALST  209 (394)
T ss_dssp             TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCE
T ss_pred             hhhcccccccccceeeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcccc-cccchhhhccccce
Confidence            11111111  001111121 23445556666666543 22 34444443 345666666544332 33445555555555


Q ss_pred             EEccCCeeee-----------------------------------cCCccccccccchhHHHhhhcccccccccCCCCcC
Q 048681          155 LDLSHNQLTG-----------------------------------EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKP  199 (266)
Q Consensus       155 L~l~~n~~~~-----------------------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  199 (266)
                      ..........                                   .+....+..+..++.+.+.... ..+  -..++..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I--~~~aF~~  286 (394)
T 4gt6_A          210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSI--GTGAFMN  286 (394)
T ss_dssp             EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEE--CTTTTTT
T ss_pred             ecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-cee--cCccccc
Confidence            5443322110                                   0111112223333222211100 001  1122233


Q ss_pred             CCCccEEEccCCcccccCCccccccccCCeeecccccccc----------cCCeEEeeCCeeeecCChhhhhcccCC
Q 048681          200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG----------VIPSLDVSYNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~l~l~~n~i~~~~p~~~~~~~~l~  266 (266)
                      +..|+.+.+.. .++.....+|.++.+|+.+++..+ ++.          .+.++.+-.+ ++.+-..+|.+|.+|+
T Consensus       287 c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          287 CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             ccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            56777777753 344233446778888888888654 321          1336777544 5545567888888775

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.02  E-value=0.00017  Score=60.85  Aligned_cols=34  Identities=6%  Similarity=0.103  Sum_probs=17.4

Q ss_pred             CCCccEEEccCCcccccCCccccccccCCeeecc
Q 048681          200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLS  233 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  233 (266)
                      +.+|+.+.+..+.++.....+|.++.+|+.+.+.
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            4555555555555442223345555555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=2.4e-06  Score=63.96  Aligned_cols=90  Identities=10%  Similarity=0.087  Sum_probs=61.6

Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEEccCCe-eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCcc
Q 048681          126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQ-LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMY  204 (266)
Q Consensus       126 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~  204 (266)
                      .+|+.|++++|.++......+..+++|+.|++++|. +++..-..+.    ....                   .+++|+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~----~~~~-------------------~~~~L~  117 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS----QLEN-------------------LQKSML  117 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH----TCHH-------------------HHHHCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH----hccc-------------------ccCCCC
Confidence            378899999888875555667788999999999885 5531111111    0000                   024689


Q ss_pred             EEEccCCc-ccccCCccccccccCCeeeccccc-cc
Q 048681          205 GIDLSCNK-LVGEIPPQIGKLTRVRALNLSHNN-LT  238 (266)
Q Consensus       205 ~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~  238 (266)
                      .|++++|. +++..-..+..+++|++|++++|. ++
T Consensus       118 ~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          118 EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             EEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             EEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            99999885 876555567788999999999885 55

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=2.4e-06  Score=64.02  Aligned_cols=86  Identities=10%  Similarity=0.085  Sum_probs=59.2

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-ccccCCCCcchhh---cccccccccccchhhhh--ccCCCC
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-LTRNISSSPLLHL---ITSIEYLSTLNYLVLVS--MLHFPN   82 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~---~~~L~~L~~~~~~~~~~--~~~~~~   82 (266)
                      .-.+|+.|++++|.++...-..+.++++|++|+|++|. |++..-. .+...   ++.|++|++++|....+  +..   
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~---  134 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIA---  134 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHH---
T ss_pred             CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHH---
Confidence            34468999999999887666777889999999999995 7654222 33331   24689999998862111  111   


Q ss_pred             cceecccCcccccCcccccCccEEEccCcc
Q 048681           83 SFTITMSWRPFRMPIQSHWHLATLYVSKKF  112 (266)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~  112 (266)
                                    +.++++|++|++++|.
T Consensus       135 --------------L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          135 --------------LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             --------------GGGCTTCCEEEEESCT
T ss_pred             --------------HhcCCCCCEEECCCCC
Confidence                          3456778888888775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.49  E-value=2.5e-05  Score=59.54  Aligned_cols=117  Identities=14%  Similarity=0.156  Sum_probs=69.2

Q ss_pred             CCCCCcEEECCCc-cCccC----CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681            9 RLRNLQELHMGAN-DLRGT----LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS   83 (266)
Q Consensus         9 ~l~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~   83 (266)
                      +-+.|++|+++++ .|...    +.+++..-+.|++|+|++|.|.+.... .+...                        
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~-alA~a------------------------   93 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR-GLIEL------------------------   93 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT-THHHH------------------------
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH-HHHHH------------------------
Confidence            4456777777764 55532    223333446677777777776654333 33333                        


Q ss_pred             ceecccCcccccCcccccCccEEEccCccccccCCcccccc---CCCCcEEEcccc---cccc----cCCccccCCCCCC
Q 048681           84 FTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY---FPRLMYLNLSRN---EFDG----SIPSSIGDLNSLK  153 (266)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~~---~~~~----~~~~~l~~l~~L~  153 (266)
                                   +..-+.|++|++++|.+.+.-...+...   -..|+.|+++++   .+..    .+.+.+..-++|+
T Consensus        94 -------------L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~  160 (197)
T 1pgv_A           94 -------------IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL  160 (197)
T ss_dssp             -------------HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC
T ss_pred             -------------HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcC
Confidence                         2334568888888888874322222221   346899999765   3331    2345666778899


Q ss_pred             EEEccCCeee
Q 048681          154 FLDLSHNQLT  163 (266)
Q Consensus       154 ~L~l~~n~~~  163 (266)
                      .|+++.+...
T Consensus       161 ~L~l~~~~~g  170 (197)
T 1pgv_A          161 RVGISFASME  170 (197)
T ss_dssp             EEECCCCCHH
T ss_pred             eEeccCCCcc
Confidence            9999877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.44  E-value=0.00074  Score=56.86  Aligned_cols=151  Identities=13%  Similarity=0.135  Sum_probs=72.8

Q ss_pred             ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCccee
Q 048681            7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTI   86 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~   86 (266)
                      +.....+..+.+...... ....++....+|+.+.+..+ ++ .+....+... ..|+.+.+..+....+          
T Consensus       190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~~L~~i~lp~~v~~I~----------  255 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGM-KALDEIAIPKNVTSIG----------  255 (379)
T ss_dssp             CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTC-SSCCEEEECTTCCEEC----------
T ss_pred             ccccccccccccccceeE-Eeecccccccccceeeeccc-ee-EEccccccCC-ccceEEEcCCCccEeC----------
Confidence            444555555555544322 44555666677777766544 22 2333244444 6666655543321000          


Q ss_pred             cccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecC
Q 048681           87 TMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEI  166 (266)
Q Consensus        87 ~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  166 (266)
                             ...+..+..|+.+.+..+ +. .++...+..+.+|+.+.+..+.+......+|..+.+|+.+.+..+ ++ .+
T Consensus       256 -------~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I  324 (379)
T 4h09_A          256 -------SFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TI  324 (379)
T ss_dssp             -------TTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EE
T ss_pred             -------ccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EE
Confidence                   011333445555555432 22 344444444556666666555554334455556666666666543 33 34


Q ss_pred             CccccccccchhHHHh
Q 048681          167 PKHLAIGCFNLEYLVE  182 (266)
Q Consensus       167 ~~~~~~~~~~l~~l~~  182 (266)
                      ....+..|.+++.+.+
T Consensus       325 ~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          325 QVYAFKNCKALSTISY  340 (379)
T ss_dssp             CTTTTTTCTTCCCCCC
T ss_pred             HHHHhhCCCCCCEEEE
Confidence            4444455555554433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.18  E-value=4.5e-05  Score=58.12  Aligned_cols=115  Identities=13%  Similarity=0.116  Sum_probs=71.8

Q ss_pred             cccCccEEEccCc-ccccc----CCccccccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeecCCcc
Q 048681           99 SHWHLATLYVSKK-FFQGN----IPLEIGVYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIPKH  169 (266)
Q Consensus        99 ~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~  169 (266)
                      +-+.|++|+++++ .+.+.    +...+.. -+.|+.|+|++|.+...    +.+.+..-+.|+.|++++|++++.-...
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            3467889999885 66532    2222332 45799999999988633    3445556688999999999887432222


Q ss_pred             ccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCC---cccc----cCCccccccccCCeeecccccc
Q 048681          170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCN---KLVG----EIPPQIGKLTRVRALNLSHNNL  237 (266)
Q Consensus       170 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n---~i~~----~~~~~~~~l~~L~~L~l~~n~l  237 (266)
                      +...+.                       .-+.|+.|+|++|   .+..    .+...+...+.|+.|+++.|.+
T Consensus       118 la~aL~-----------------------~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTL-----------------------VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTT-----------------------TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHh-----------------------hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            221111                       1356888888754   3332    2444566677888888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.83  E-value=0.0019  Score=45.74  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=33.3

Q ss_pred             CCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                      +++|+.|+|++|.|+..-+..|..+++|+.|+|.+|++.
T Consensus        30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            578999999999999545556788999999999999876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.32  E-value=0.005  Score=43.50  Aligned_cols=54  Identities=20%  Similarity=0.150  Sum_probs=28.0

Q ss_pred             EEECCCccCc-cCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681           15 ELHMGANDLR-GTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus        15 ~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      .++-+++.++ ..+|..+.  .+|++|+|++|.|+ .++...|..+ ++|+.|++.+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l-~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDAL-PALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGC-TTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhc-cccCEEEecCCC
Confidence            4555555554 22333222  34666666666665 3444244444 666666666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.9 bits (162), Expect = 2e-13
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 7/167 (4%)

Query: 1   MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
           ++ I+ L  L NL EL +  N L+      L ++T+L  LDL  NQ++     S L  L 
Sbjct: 209 ISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 266

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
                 + ++ +  ++ L    +  +  +      PI +  +L  L +         P+ 
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 326

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167
                 +L  L  + N+   S  SS+ +L ++ +L   HNQ++   P
Sbjct: 327 ---SLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 5e-11
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 34/215 (15%)

Query: 76  SMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSR 135
           + L       I+ +       +    +L +L  +        PL I      L  L+L+ 
Sbjct: 172 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNG 228

Query: 136 NEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP-------KHLAIGCFNLEYLVESLMFTT 188
           N+       ++  L +L  LDL++NQ++   P         L +G   +  +      T 
Sbjct: 229 NQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 286

Query: 189 KETSYS--------YKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV 240
                              L  +  + L  N +    P  +  LT+++ L  ++N ++ V
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV 344

Query: 241 IP--------SLDVSYNNLNGKIP----PQLVELN 263
                      L   +N ++   P     ++ +L 
Sbjct: 345 SSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 379

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.8 bits (143), Expect = 5e-11
 Identities = 34/160 (21%), Positives = 55/160 (34%), Gaps = 4/160 (2%)

Query: 12  NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNY 71
            L  L    N L GTLP  + ++ +L  +    N+++  I  S             + N 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 72  LVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQ----GNIPLEIGVYFPR 127
           L       F N     +      +   +     +   ++K           L        
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245

Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167
           L  L+L  N   G++P  +  L  L  L++S N L GEIP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 14/245 (5%)

Query: 9   RLRNLQELHMGANDLRG--TLPWCLENITSLKVLDLYLN-QLTRNISSSPLLHLITSIEY 65
           +   +  L +   +L     +P  L N+  L  L +     L   I  +          Y
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 66  LSTLNYLVLVSMLHFPNSFTITMSWRPFRMP------IQSHWHLATLYVSKKFFQGNIPL 119
           ++  N    +          +T+ +    +       I S  +L  +        G IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 120 EIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY 179
             G +      + +SRN   G IP +  +LN        +           +       +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 180 LVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
           L ++ +          K      + G+DL  N++ G +P  + +L  + +LN+S NNL G
Sbjct: 228 LAKNSLAFDLGKVGLSK-----NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 240 VIPSL 244
            IP  
Sbjct: 283 EIPQG 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 6e-10
 Identities = 32/238 (13%), Positives = 76/238 (31%), Gaps = 13/238 (5%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSS-----PLLHLITSIEY 65
            +   L +  N +        +N+ +L  L L  N++++    +      L  L  S   
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 66  LSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYF 125
           L  L   +  ++             R       +   +  L  +     G          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GM 149

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLM 185
            +L Y+ ++      +IP  +    SL  L L  N++T      L       +  +    
Sbjct: 150 KKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 186 FTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS 243
            +  +         L +++      N  + ++P  +     ++ + L +NN++ +  +
Sbjct: 207 ISAVDNGSLANTPHLRELH----LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 27/167 (16%)

Query: 126 PRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP---------KHLAIGCFN 176
           P    L+L  N+          +L +L  L L +N+++   P         + L +    
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 177 LEYLVESLMFTTKETSYSY-----------KGKPLNKMYGIDLSCNKLVGEIPPQIGKLT 225
           L+ L E +  T +E                 G     +  +  +  K  G        + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 226 RVRALNLSHNNLTGVIPS-------LDVSYNNLNGKIPPQLVELNAL 265
           ++  + ++  N+T +          L +  N +       L  LN L
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 19/257 (7%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLN 70
              Q + +  N +            +L +L L+ N L R  +++     +     LS   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 71  YLVLVSMLHFPNSFTIT-------MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGV 123
            L  V    F     +                  +    L  LY+     Q     +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFR 150

Query: 124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES 183
               L +L L  N        +   L+SL  L L  N++    P         +   + +
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS 243
              +   T      + L     + L+ N  V +          ++    S + +   +P 
Sbjct: 211 NNLSALPTEALAPLRALQY---LRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 244 -------LDVSYNNLNG 253
                    ++ N+L G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 5e-08
 Identities = 36/241 (14%), Positives = 81/241 (33%), Gaps = 20/241 (8%)

Query: 35  TSLKVLDLYLNQLTRNISSS--PLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP 92
            + + + L+ N+++   ++S     +L     + + L  +   +         + +S   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 93  FRMPIQSHW-----HLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIG 147
               +          L TL++ +   Q  +   +      L YL L  N        +  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 148 DLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGID 207
           DL +L  L L  N+++  +P+    G  +L+     L        + +  + L ++  + 
Sbjct: 151 DLGNLTHLFLHGNRISS-VPERAFRGLHSLDR--LLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 208 LSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP---------SLDVSYNNLNGKIPPQ 258
           L  N L       +  L  ++ L L+ N                    S + +   +P +
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 259 L 259
           L
Sbjct: 268 L 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 6/170 (3%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSS-----PLLHLIT 61
              L  L  LH+    L+   P     + +L+ L L  N L      +      L HL  
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI 121
               +S++       +                                       +P E 
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 122 GVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA 171
                 L YL L+ N +     +       L+    S +++   +P+ LA
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 3e-08
 Identities = 28/178 (15%), Positives = 45/178 (25%), Gaps = 27/178 (15%)

Query: 11  RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEY----- 65
           ++   LH+  N L       L   T L  L+L   +LT+      L  L T         
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 66  ---------------------LSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLA 104
                                L++L    L  +      +      +     + +     
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 105 TLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQL 162
                       +P  +      L  L L  N    +IP      + L F  L  N  
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 8e-07
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTK 189
            L+L+  +   ++   +  L  +  LDLSHN+L    P   A+ C  +    ++ +    
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 190 ETSYSYKGKPLNKMYGIDLSCNKLVG-EIPPQIGKLTRVRALNLSHNNLTGV 240
             +   + + L       L  N+L        +    R+  LNL  N+L   
Sbjct: 60  GVANLPRLQEL------LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 27/147 (18%)

Query: 38  KVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPI 97
           +VL L    LT           +  +E L  + +L L              S    R   
Sbjct: 1   RVLHLAHKDLTV----------LCHLEQLLLVTHLDL--------------SHNRLRALP 36

Query: 98  QSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEF-DGSIPSSIGDLNSLKFLD 156
            +   L  L V +        ++     PRL  L L  N     +    +     L  L+
Sbjct: 37  PALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 96

Query: 157 LSHNQLTGE--IPKHLAIGCFNLEYLV 181
           L  N L  E  I + LA    ++  ++
Sbjct: 97  LQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 7/166 (4%)

Query: 2   NSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLIT 61
            +I G+  L NL  L +  N +       L  + +L  +           + S +  L +
Sbjct: 54  TTIEGVQYLNNLIGLELKDNQI-----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQS 108

Query: 62  SIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI 121
                 T   +  V+ L   ++  +          I     L  L            L  
Sbjct: 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP 168

Query: 122 GVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP 167
                +L  L    N+     P  +  L +L  + L +NQ++   P
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 10/171 (5%)

Query: 10  LRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTL 69
           L ++ ++    +D+       ++ + ++  L L  N+LT     + L +L       + +
Sbjct: 45  LNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
             L  +  L    S ++  +       +          +   +   N   +I V      
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ-----LESLYLGNNKITDITVLSRLTK 157

Query: 130 YLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYL 180
              LS  +   S    +  L  L+ L LS N ++    + LA G  NL+ L
Sbjct: 158 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALA-GLKNLDVL 205

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 7/158 (4%)

Query: 1   MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLI 60
           + S+ G+  L N+ +L +  N L       L N+ +L  L L  N++    S   L  L 
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK 115

Query: 61  TSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLE 120
           +     + ++ +  +  L    S  +  +       +     L TL +        +PL 
Sbjct: 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA 175

Query: 121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLS 158
                 +L  L LS+N    S   ++  L +L  L+L 
Sbjct: 176 ---GLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELF 208

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 5e-05
 Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 4/88 (4%)

Query: 103 LATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDG----SIPSSIGDLNSLKFLDLS 158
           + +L +  +        E+     +   + L            I S++    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 159 HNQLTGEIPKHLAIGCFNLEYLVESLMF 186
            N+L       +  G       ++ L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 8e-05
 Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 24/113 (21%)

Query: 128 LMYLNLSRNEF-DGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMF 186
           +  L++   E  D      +  L   + + L    LT    K ++        L E    
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE---- 59

Query: 187 TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTG 239
                              ++L  N+L       + +  +  +  +   +L  
Sbjct: 60  -------------------LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 13/119 (10%)

Query: 70  NYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLM 129
                    HF +           ++            + +   Q             L 
Sbjct: 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP---------GSVLR 372

Query: 130 YLNLSRNEFDG----SIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESL 184
            L L+  +       S+ +++   +SL+ LDLS+N L       L         L+E L
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 36/182 (19%)

Query: 71  YLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMY 130
           +L  +   +        +      + ++ ++      + +     ++   I      L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 131 LNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKE 190
                N     I S      SL+ L++S+N+L  E+P         LE L          
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP----RLERL---------- 309

Query: 191 TSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPSLDVSYNN 250
                             S N L  E+P     L +   L++ +N L    P +  S  +
Sbjct: 310 ----------------IASFNHL-AEVPELPQNLKQ---LHVEYNPLRE-FPDIPESVED 348

Query: 251 LN 252
           L 
Sbjct: 349 LR 350

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 28/162 (17%), Positives = 64/162 (39%), Gaps = 10/162 (6%)

Query: 3   SISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITS 62
           S + L ++  LQ   +G   + G     +E + +L  ++   NQLT       L  L+  
Sbjct: 35  SQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 89

Query: 63  IEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIG 122
           +   + +  +  ++ L      T+  +      P+++  +L  L +S         L   
Sbjct: 90  LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL 149

Query: 123 VYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG 164
               +L + +        +    + +L +L+ LD+S N+++ 
Sbjct: 150 TSLQQLNFSS-----NQVTDLKPLANLTTLERLDISSNKVSD 186

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 33/217 (15%), Positives = 57/217 (26%), Gaps = 17/217 (7%)

Query: 7   LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYL 66
           L +   LQ L +    L   +   L   ++L  L+L         S   L  L++S   L
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLLSSCSRL 123

Query: 67  STLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFP 126
             LN               +            S +        K   + ++   +     
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-------KNLQKSDLSTLVRRCPN 176

Query: 127 RLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSH-NQLTGEIPKHLAIGCFNLEYLVESLM 185
            +                    LN L+ L LS    +  E    L      L+ L    +
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI 235

Query: 186 FTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIG 222
                     +  P      + ++C+       P IG
Sbjct: 236 VPDGTLQLLKEALP-----HLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 128 LMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES 183
           ++     R+  D  +         ++ +DLS++ +       +   C  L+ L   
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 9/85 (10%), Positives = 24/85 (28%)

Query: 77  MLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRN 136
                  +      +       +   L  L +S       +P ++       + L++SR 
Sbjct: 152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 211

Query: 137 EFDGSIPSSIGDLNSLKFLDLSHNQ 161
                    + +L  L+     + +
Sbjct: 212 RIHSLPSYGLENLKKLRARSTYNLK 236

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 7/140 (5%)

Query: 124 YFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES 183
           Y      L+L     D      +   N    L+   +       + +      L  L  S
Sbjct: 20  YDGSQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA--TLRIIEENIPELLSLNLS 73

Query: 184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIPS 243
                +    S   +    +  ++LS N+L  E      K  ++  L L  N+L+     
Sbjct: 74  NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

Query: 244 LDVSYNNLNGKIPPQLVELN 263
              +Y +   +  P+L+ L+
Sbjct: 134 -QSTYISAIRERFPKLLRLD 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.99
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.57
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.05

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=7e-26  Score=186.58  Aligned_cols=232  Identities=25%  Similarity=0.340  Sum_probs=143.8

Q ss_pred             CCcEEECCCccCccC--CChhhhcCCCCcEEeccC-CcccccCCCCcchhhcccccccccccchhh----hhccCCCCcc
Q 048681           12 NLQELHMGANDLRGT--LPWCLENITSLKVLDLYL-NQLTRNISSSPLLHLITSIEYLSTLNYLVL----VSMLHFPNSF   84 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~----~~~~~~~~~~   84 (266)
                      +++.|+++++.+.+.  +|..|+++++|++|++++ |++++.+|. .|.++ ++|++|++++|...    ......+.+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~-~i~~L-~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc-ccccc-cccchhhhccccccccccccccchhhhc
Confidence            577788888877753  677788888888888875 677777777 77777 78888888877621    1122222222


Q ss_pred             eecccC----cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           85 TITMSW----RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        85 ~~~~~~----~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                      ..+.+.    ..+|..+..++.++.+++++|.+.+.+|..+......++.+++++|.+++..+..+..+. ...+++..+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            222221    234556666777777777777776666666655333346677777776655555555443 335666666


Q ss_pred             eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                      ...+.+|... ..+.+++.++...+......   .....++.|+.|++++|.+++.+|..+.++++|++|++++|+++|.
T Consensus       208 ~~~~~~~~~~-~~~~~l~~l~~~~~~l~~~~---~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         208 MLEGDASVLF-GSDKNTQKIHLAKNSLAFDL---GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             EEEECCGGGC-CTTSCCSEEECCSSEECCBG---GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             cccccccccc-cccccccccccccccccccc---cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence            6665444333 34445555554444332211   1223356777777777777777777777777777777777777766


Q ss_pred             CC---------eEEeeCCe
Q 048681          241 IP---------SLDVSYNN  250 (266)
Q Consensus       241 ~~---------~l~l~~n~  250 (266)
                      +|         .+++++|+
T Consensus       284 iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         284 IPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCSTTGGGSCGGGTCSSS
T ss_pred             CCCcccCCCCCHHHhCCCc
Confidence            65         46667776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=8.2e-25  Score=180.12  Aligned_cols=222  Identities=26%  Similarity=0.308  Sum_probs=145.6

Q ss_pred             CccCCChhhhcCCCCcEEeccCCcccc--cCCCCcchhhcccccccccccc-hhhhhccCCCCcceecccCcccccCccc
Q 048681           23 LRGTLPWCLENITSLKVLDLYLNQLTR--NISSSPLLHLITSIEYLSTLNY-LVLVSMLHFPNSFTITMSWRPFRMPIQS   99 (266)
Q Consensus        23 i~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (266)
                      +.++..+.-..-.+++.|+++++.+++  .+|. .+.++ +.|++|+++++ ...                ..+|..+.+
T Consensus        38 w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~-~l~~L-~~L~~L~Ls~~N~l~----------------g~iP~~i~~   99 (313)
T d1ogqa_          38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANL-PYLNFLYIGGINNLV----------------GPIPPAIAK   99 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGC-TTCSEEEEEEETTEE----------------SCCCGGGGG
T ss_pred             CCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh-HHhcC-ccccccccccccccc----------------ccccccccc
Confidence            444443332334579999999999987  4677 88888 99999999874 310                234555666


Q ss_pred             ccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhH
Q 048681          100 HWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEY  179 (266)
Q Consensus       100 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~  179 (266)
                      +++|++|++++|++.+..+..+.. +.+|+.++++.|.+...+|..+..+++++.+++++|++.+.+|..+......+..
T Consensus       100 L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~  178 (313)
T d1ogqa_         100 LTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS  178 (313)
T ss_dssp             CTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred             ccccchhhhccccccccccccccc-hhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccc
Confidence            666666666666666444433333 5666666666666665566666666666666666666665555444321111122


Q ss_pred             HHhhhcc---------------------cccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          180 LVESLMF---------------------TTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       180 l~~~~~~---------------------~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                      ++...+.                     .......+.....++.++.+++++|.+.+.++ .+..+++|+.|++++|+++
T Consensus       179 l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~  257 (313)
T d1ogqa_         179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             EECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeec
Confidence            2211111                     11111223333457899999999999986554 5788999999999999999


Q ss_pred             ccCC----------eEEeeCCeeeecCChhhhhcccC
Q 048681          239 GVIP----------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       239 ~~~~----------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      |.+|          .|+|++|.++|.+|+ ++++++|
T Consensus       258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L  293 (313)
T d1ogqa_         258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRF  293 (313)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGS
T ss_pred             ccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCC
Confidence            8877          899999999999996 5666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.7e-22  Score=161.91  Aligned_cols=230  Identities=19%  Similarity=0.180  Sum_probs=165.2

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      +.+++|+|++|.|+...+.+|.++++|++|++++|.+....+. .+... ..+..++...+...                
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~-~~~~~-~~~~~l~~~~~~~~----------------   93 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGL-ALLEQLDLSDNAQL----------------   93 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTC-TTCCEEECCSCTTC----------------
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccc-ccccc-cccccccccccccc----------------
Confidence            3567777887777766666777777788888877777644333 44444 56665555433311                


Q ss_pred             ccc-ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcc
Q 048681           91 RPF-RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKH  169 (266)
Q Consensus        91 ~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  169 (266)
                      ..+ +..+..+++|++|+++.|.+. .++...+....+|+.+++.+|.++...+..+..+++|+.|++++|+++ .+++.
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~  171 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER  171 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTT
T ss_pred             ccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccchh
Confidence            112 445677888999999998886 455555555778999999999987555677888888999999999887 45556


Q ss_pred             ccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-------
Q 048681          170 LAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-------  242 (266)
Q Consensus       170 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------  242 (266)
                      .+.++.+++.+++..+.........  +..+++|++|++++|.+.+..+..|..+++|+++++++|++...-+       
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~--f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~  249 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHA--FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW  249 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred             hhccccccchhhhhhccccccChhH--hhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHH
Confidence            6677788888887777666555433  3447899999999999997666788899999999999999885533       


Q ss_pred             --eEEeeCCeeeecCChhhhhc
Q 048681          243 --SLDVSYNNLNGKIPPQLVEL  262 (266)
Q Consensus       243 --~l~l~~n~i~~~~p~~~~~~  262 (266)
                        .+....+.+....|..+.+.
T Consensus       250 l~~~~~~~~~~~C~~p~~l~g~  271 (284)
T d1ozna_         250 LQKFRGSSSEVPCSLPQRLAGR  271 (284)
T ss_dssp             HHHCCSEECCCBEEESGGGTTC
T ss_pred             HHhCcCCCCceEeCCchHHcCC
Confidence              45556667776778877663

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.5e-21  Score=152.33  Aligned_cols=177  Identities=24%  Similarity=0.162  Sum_probs=103.0

Q ss_pred             CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCc
Q 048681           12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWR   91 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~   91 (266)
                      ++++|+|++|.|++..+.+|.++++|++|++++|.|+. ++.  +..+ ++|++|++++|..                 .
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~--~~~l-~~L~~L~Ls~N~l-----------------~   90 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGTL-PVLGTLDLSHNQL-----------------Q   90 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSCC-TTCCEEECCSSCC-----------------S
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc--cccc-ccccccccccccc-----------------c
Confidence            45555565555554444555555556666665555552 221  2233 5555555555542                 1


Q ss_pred             ccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccc
Q 048681           92 PFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLA  171 (266)
Q Consensus        92 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  171 (266)
                      ..+..+..+++|+.|+++++.+. .++...+..+.+++.|++++|.+....+..+..+++++.+++++|++++ ++...+
T Consensus        91 ~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~  168 (266)
T d1p9ag_          91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLL  168 (266)
T ss_dssp             SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTT
T ss_pred             ccccccccccccccccccccccc-eeeccccccccccccccccccccceeccccccccccchhcccccccccc-cCcccc
Confidence            22333444555666666665554 3333333335556666666665553334444555566666666666552 222221


Q ss_pred             ccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          172 IGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       172 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                                                ..++.|++|+|++|.++ .+|..+..+++|+.|++++|++.
T Consensus       169 --------------------------~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         169 --------------------------NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             --------------------------TTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             --------------------------ccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence                                      23788999999999998 78888888999999999998765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=4.4e-20  Score=150.90  Aligned_cols=233  Identities=16%  Similarity=0.126  Sum_probs=134.7

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhcc-CCCCcce---e
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSML-HFPNSFT---I   86 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~~~~---~   86 (266)
                      +.+++|++++|.|+...+.+|.++++|++|++++|.+....|. .|..+ +.|++|++.+|.+..-.. ..+.+..   .
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~-~f~~l-~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPL-VKLERLYLSKNQLKELPEKMPKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTC-TTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchh-hhhCC-CccCEecccCCccCcCccchhhhhhhhhcc
Confidence            6799999999999877667899999999999999999865555 67777 899999998887321111 1111111   1


Q ss_pred             cccCcccccC-cccccCccEEEccCcccccc-CCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           87 TMSWRPFRMP-IQSHWHLATLYVSKKFFQGN-IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        87 ~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                      ...+..++.. +.....++.+....+..... .....+..+++|+.+++.+|.+. .++..  ..++++.|++++|....
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITK  185 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCC
Confidence            1122222211 22223334444433322210 01111122444555555555443 22222  13445555555554443


Q ss_pred             cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccC---
Q 048681          165 EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI---  241 (266)
Q Consensus       165 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---  241 (266)
                      ..+ ..+..+..+..++++.+.........  ...+++|++|+|++|.++ .+|..+..+++|+.|++++|+++...   
T Consensus       186 ~~~-~~~~~~~~l~~L~~s~n~l~~~~~~~--~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         186 VDA-ASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             ECT-GGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CCh-hHhhcccccccccccccccccccccc--ccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhh
Confidence            222 22233344444444333333222211  123789999999999998 78888999999999999999988542   


Q ss_pred             -------------CeEEeeCCeee
Q 048681          242 -------------PSLDVSYNNLN  252 (266)
Q Consensus       242 -------------~~l~l~~n~i~  252 (266)
                                   ..|++++|++.
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccCcchhcccCCCCEEECCCCcCc
Confidence                         17999999975

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=7.1e-20  Score=153.88  Aligned_cols=248  Identities=22%  Similarity=0.270  Sum_probs=148.6

Q ss_pred             CCCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh--hcc
Q 048681            1 MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV--SML   78 (266)
Q Consensus         1 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~--~~~   78 (266)
                      |++++++..+++|++|++++|.++...  .|+++++|++|++++|.+.+. +  .+..+ ++|+.|++.++....  ...
T Consensus        56 I~~l~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i-~--~l~~l-~~L~~L~~~~~~~~~~~~~~  129 (384)
T d2omza2          56 IKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T--PLANL-TNLTGLTLFNNQITDIDPLK  129 (384)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G--GGTTC-TTCCEEECCSSCCCCCGGGT
T ss_pred             CCCccccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccc-c--ccccc-cccccccccccccccccccc
Confidence            457788899999999999999998543  388999999999999998753 2  46666 888888887766211  110


Q ss_pred             CCCCcce---------------------------------------------ecccCcccccCcccccCccEEEccCccc
Q 048681           79 HFPNSFT---------------------------------------------ITMSWRPFRMPIQSHWHLATLYVSKKFF  113 (266)
Q Consensus        79 ~~~~~~~---------------------------------------------~~~~~~~l~~~~~~~~~L~~L~l~~n~~  113 (266)
                      .......                                             ..............+++++.+++++|.+
T Consensus       130 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i  209 (384)
T d2omza2         130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI  209 (384)
T ss_dssp             TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCcc
Confidence            0000000                                             0000011122344455666666666666


Q ss_pred             cccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccc-
Q 048681          114 QGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETS-  192 (266)
Q Consensus       114 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-  192 (266)
                      ++. ++.  ...++|+++++.+|.+. .+ ..+..+++|+.+++++|++++ ++.  +..+.+++.+++..+......+ 
T Consensus       210 ~~~-~~~--~~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~~~l~~~~~~  281 (384)
T d2omza2         210 SDI-TPL--GILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNISPL  281 (384)
T ss_dssp             CCC-GGG--GGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGGG
T ss_pred             CCC-Ccc--cccCCCCEEECCCCCCC-Cc-chhhcccccchhccccCccCC-CCc--ccccccCCEeeccCcccCCCCcc
Confidence            532 221  12456666666666654 22 244555666666666665553 211  1233344443333222211110 


Q ss_pred             -----------------cCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccC--------CeEEee
Q 048681          193 -----------------YSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVI--------PSLDVS  247 (266)
Q Consensus       193 -----------------~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~l~l~  247 (266)
                                       .......++.++.|++++|.+++ ++. +..+++|++|++++|++++..        .+|+++
T Consensus       282 ~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~~-l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~  359 (384)
T d2omza2         282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISP-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAG  359 (384)
T ss_dssp             TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccchhcccCeEECCCCCCCC-Ccc-cccCCCCCEEECCCCCCCCChhHcCCCCCCEEECC
Confidence                             01112346889999999999984 443 788999999999999988542        289999


Q ss_pred             CCeeeecCChhhhhcccCC
Q 048681          248 YNNLNGKIPPQLVELNALA  266 (266)
Q Consensus       248 ~n~i~~~~p~~~~~~~~l~  266 (266)
                      +|.+++ +|+ +.++++|+
T Consensus       360 ~N~l~~-l~~-l~~l~~L~  376 (384)
T d2omza2         360 HNQISD-LTP-LANLTRIT  376 (384)
T ss_dssp             SSCCCB-CGG-GTTCTTCS
T ss_pred             CCcCCC-Chh-hccCCCCC
Confidence            999985 443 77777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.7e-20  Score=146.09  Aligned_cols=193  Identities=22%  Similarity=0.195  Sum_probs=149.5

Q ss_pred             cCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceec
Q 048681            8 FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTIT   87 (266)
Q Consensus         8 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~   87 (266)
                      .+...+.+++-+++.++ .+|..+.  +++++|+|++|.|++..+. .|..+ ++|++|++++|.+.             
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~-~f~~l-~~L~~L~L~~N~l~-------------   68 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLA-TLMPY-TRLTQLNLDRAELT-------------   68 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTC-TTCCEEECTTSCCC-------------
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHH-Hhhcc-cccccccccccccc-------------
Confidence            45566778899999999 4566554  5899999999999854334 67777 89999999988641             


Q ss_pred             ccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCC
Q 048681           88 MSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIP  167 (266)
Q Consensus        88 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  167 (266)
                          .++ .+..+++|++|++++|+++ ..+..+.. +++|+.|+++++.+....+..+..+.+++.+++++|.+. .++
T Consensus        69 ----~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~  140 (266)
T d1p9ag_          69 ----KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLP  140 (266)
T ss_dssp             ----EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCC
T ss_pred             ----ccc-ccccccccccccccccccc-cccccccc-ccccccccccccccceeeccccccccccccccccccccc-eec
Confidence                122 1345778999999999987 44554444 889999999999887666677778889999999999887 455


Q ss_pred             ccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC-----
Q 048681          168 KHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP-----  242 (266)
Q Consensus       168 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----  242 (266)
                      ...+                          ..++.++.+++++|.+++..+..|..+++|++|++++|+++..++     
T Consensus       141 ~~~~--------------------------~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~  194 (266)
T d1p9ag_         141 PGLL--------------------------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS  194 (266)
T ss_dssp             TTTT--------------------------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cccc--------------------------cccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCC
Confidence            4443                          126789999999999997666778999999999999999995543     


Q ss_pred             ----eEEeeCCeee
Q 048681          243 ----SLDVSYNNLN  252 (266)
Q Consensus       243 ----~l~l~~n~i~  252 (266)
                          .|++++|++.
T Consensus       195 ~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         195 HLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCSEEECCSCCBC
T ss_pred             CCCCEEEecCCCCC
Confidence                8999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.9e-19  Score=143.81  Aligned_cols=216  Identities=17%  Similarity=0.141  Sum_probs=165.8

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      ..+..++++++ .+|..+.  .++++|+|++|+|+. +|...|..+ ++|++|+++++.+..-                .
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~-i~~~~f~~l-~~L~~L~ls~n~l~~i----------------~   72 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH-VPAASFRAC-RNLTILWLHSNVLARI----------------D   72 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCE-ECTTTTTTC-TTCCEEECCSSCCCEE----------------C
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCC-CCHHHhhcc-cccccccccccccccc----------------c
Confidence            34677777877 5566554  578999999999985 554377777 9999999998873111                1


Q ss_pred             ccCcccccCccEEEccC-ccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccc
Q 048681           94 RMPIQSHWHLATLYVSK-KFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAI  172 (266)
Q Consensus        94 ~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  172 (266)
                      +..+.....++.+.... +.++ .+++..+..+++|++|++++|.+....+..+....+|+.+++++|+++ .++...+.
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~  150 (284)
T d1ozna_          73 AAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR  150 (284)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             cccccccccccccccccccccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhc
Confidence            12234456777877654 4554 666555556899999999999997566677888899999999999998 56666667


Q ss_pred             cccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC----------
Q 048681          173 GCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP----------  242 (266)
Q Consensus       173 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------  242 (266)
                      .+.+++.+++..+.........+  ..+++|+.+++++|.+++..|..|..+++|++|++++|++.+.++          
T Consensus       151 ~~~~L~~L~l~~N~l~~l~~~~f--~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         151 DLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             cccchhhcccccCcccccchhhh--ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            78888888888777665554433  347899999999999987788889999999999999999987755          


Q ss_pred             eEEeeCCeeeec
Q 048681          243 SLDVSYNNLNGK  254 (266)
Q Consensus       243 ~l~l~~n~i~~~  254 (266)
                      .|++++|++..+
T Consensus       229 ~L~l~~N~l~C~  240 (284)
T d1ozna_         229 YLRLNDNPWVCD  240 (284)
T ss_dssp             EEECCSSCEECS
T ss_pred             EEEecCCCCCCC
Confidence            899999998754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.9e-17  Score=138.80  Aligned_cols=239  Identities=21%  Similarity=0.228  Sum_probs=155.1

Q ss_pred             cCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchh--hhhccCCCCcce
Q 048681            8 FRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLV--LVSMLHFPNSFT   85 (266)
Q Consensus         8 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~--~~~~~~~~~~~~   85 (266)
                      ..+.+|++|+++++.|+..  +.+..+++|++|++++|+|++ ++  .+..+ ++|++|++++|.+  ...+..++++..
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~--~l~~L-~~L~~L~L~~n~i~~i~~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT--PLKNL-TKLVDILMNNNQIADITPLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG--GGTTC-TTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc--cccCC-ccccccccccccccccccccccccccc
Confidence            4578899999999999854  468899999999999999985 33  47777 9999999999983  223455555543


Q ss_pred             ecccCcccc---c------------------------------------------CcccccCccEEEccCccccccCCcc
Q 048681           86 ITMSWRPFR---M------------------------------------------PIQSHWHLATLYVSKKFFQGNIPLE  120 (266)
Q Consensus        86 ~~~~~~~l~---~------------------------------------------~~~~~~~L~~L~l~~n~~~~~~~~~  120 (266)
                      .......+.   .                                          .+.............+...  ....
T Consensus       115 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  192 (384)
T d2omza2         115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DISV  192 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--CCGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--cccc
Confidence            222211110   0                                          0001111111222222211  1122


Q ss_pred             ccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCCCcCC
Q 048681          121 IGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPL  200 (266)
Q Consensus       121 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  200 (266)
                      . ..+++++.+++++|.+++..  ....+++|+.+++++|++++ ++  ....+.+++.+++..+.......    ...+
T Consensus       193 ~-~~l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~----~~~~  262 (384)
T d2omza2         193 L-AKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAP----LSGL  262 (384)
T ss_dssp             G-GGCTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG----GTTC
T ss_pred             c-ccccccceeeccCCccCCCC--cccccCCCCEEECCCCCCCC-cc--hhhcccccchhccccCccCCCCc----cccc
Confidence            2 33789999999999987433  24677899999999999873 43  23566777777777665554433    2235


Q ss_pred             CCccEEEccCCcccccC--------------------CccccccccCCeeecccccccccCC--------eEEeeCCeee
Q 048681          201 NKMYGIDLSCNKLVGEI--------------------PPQIGKLTRVRALNLSHNNLTGVIP--------SLDVSYNNLN  252 (266)
Q Consensus       201 ~~L~~L~L~~n~i~~~~--------------------~~~~~~l~~L~~L~l~~n~l~~~~~--------~l~l~~n~i~  252 (266)
                      +.|+.|+++++.+++..                    ...+..+++++.+++++|++++..+        .|++++|.++
T Consensus       263 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCC
Confidence            67777777777665211                    1235666778888888888876533        8999999887


Q ss_pred             ecCChhhhhcccCC
Q 048681          253 GKIPPQLVELNALA  266 (266)
Q Consensus       253 ~~~p~~~~~~~~l~  266 (266)
                       .+| ++.++++|+
T Consensus       343 -~l~-~l~~l~~L~  354 (384)
T d2omza2         343 -DVS-SLANLTNIN  354 (384)
T ss_dssp             -CCG-GGGGCTTCC
T ss_pred             -CCh-hHcCCCCCC
Confidence             454 588887764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1.7e-17  Score=135.25  Aligned_cols=228  Identities=18%  Similarity=0.219  Sum_probs=147.4

Q ss_pred             CCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhh----hccCCCCcceec
Q 048681           12 NLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLV----SMLHFPNSFTIT   87 (266)
Q Consensus        12 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~----~~~~~~~~~~~~   87 (266)
                      .++.++=++..++ .+|..+.  +++++|++++|+|+. ++..+|..+ ++|++|++++|....    .+..++.+....
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~-l~~~~f~~l-~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCC-BCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCC-cChhHhhcc-ccccccccccccccccchhhhhCCCccCEec
Confidence            4566777777788 5566664  689999999999985 554377787 999999999988321    123333333322


Q ss_pred             c---cCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccc--ccCCccccCCCCCCEEEccCCee
Q 048681           88 M---SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFD--GSIPSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        88 ~---~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~~  162 (266)
                      .   .+..+|...  ...++.|++..|.+. .++...+........++...+...  ...+..+..+++|+.+++++|.+
T Consensus        86 l~~n~l~~l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          86 LSKNQLKELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CCSSCCSBCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ccCCccCcCccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            2   223333322  235566666666665 344443333455666666655442  22345566778888888888887


Q ss_pred             eecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeecccccccccCC
Q 048681          163 TGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP  242 (266)
Q Consensus       163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  242 (266)
                      . .++...   +.+++.+++..+........  ....++.++.|++++|.+++..+..+.++++|++|++++|+++..++
T Consensus       163 ~-~l~~~~---~~~L~~L~l~~n~~~~~~~~--~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~  236 (305)
T d1xkua_         163 T-TIPQGL---PPSLTELHLDGNKITKVDAA--SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  236 (305)
T ss_dssp             C-SCCSSC---CTTCSEEECTTSCCCEECTG--GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             c-ccCccc---CCccCEEECCCCcCCCCChh--Hhhccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            6 455444   34555666655544433332  22346788889999888886667778888899999999998875533


Q ss_pred             ---------eEEeeCCeeee
Q 048681          243 ---------SLDVSYNNLNG  253 (266)
Q Consensus       243 ---------~l~l~~n~i~~  253 (266)
                               .|++++|.|+.
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCCC
T ss_pred             ccccccCCCEEECCCCccCc
Confidence                     88999998884

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.5e-16  Score=124.25  Aligned_cols=174  Identities=21%  Similarity=0.283  Sum_probs=101.4

Q ss_pred             ccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcc
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSF   84 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~   84 (266)
                      ..+..+.+|++|++.+|.++..  +.+..+++|++|++++|.+++..   .+..+ ++++.+++.+|... .        
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~---~l~~l-~~l~~l~~~~n~~~-~--------   99 (227)
T d1h6ua2          35 VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA---PLKNL-TKITELELSGNPLK-N--------   99 (227)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG---GGTTC-CSCCEEECCSCCCS-C--------
T ss_pred             CCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc---ccccc-cccccccccccccc-c--------
Confidence            3445677888888888888843  35788888888888888887432   35555 78888887776521 1        


Q ss_pred             eecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           85 TITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        85 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                              ++ .+..++.|+.+.++++...+ ++ .+. ..+.+..+.+.++.+..  ...+..+++|+.|++++|.+.+
T Consensus       100 --------i~-~l~~l~~L~~l~l~~~~~~~-~~-~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2         100 --------VS-AIAGLQSIKTLDLTSTQITD-VT-PLA-GLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             --------CG-GGTTCTTCCEEECTTSCCCC-CG-GGT-TCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCC
T ss_pred             --------cc-cccccccccccccccccccc-cc-hhc-cccchhhhhchhhhhch--hhhhcccccccccccccccccc
Confidence                    11 23455666666666665542 21 122 24566666666665532  2234556666666666666542


Q ss_pred             cCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          165 EIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       165 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                       .+. + .                          .+++|+.|++++|.++ .++. +.++++|++|++++|+++
T Consensus       166 -~~~-l-~--------------------------~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         166 -LTP-L-A--------------------------NLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             -CGG-G-T--------------------------TCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCCC
T ss_pred             -chh-h-c--------------------------ccccceecccCCCccC-CChh-hcCCCCCCEEECcCCcCC
Confidence             111 1 1                          1455666666666555 2332 455556666655555555

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.8e-16  Score=122.35  Aligned_cols=166  Identities=22%  Similarity=0.332  Sum_probs=116.2

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecc
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITM   88 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~   88 (266)
                      .+..|++|++++|.+....  .+..+++|++|++++|.|++ ++  .+..+ ++|+.|++++|.+               
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~--~~~~l-~~L~~L~l~~n~i---------------  102 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK--PLANL-KNLGWLFLDENKV---------------  102 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG--GGTTC-TTCCEEECCSSCC---------------
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc--ccccC-ccccccccccccc---------------
Confidence            4677888888888887432  47788888888888888875 32  34455 7888888877763               


Q ss_pred             cCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCc
Q 048681           89 SWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPK  168 (266)
Q Consensus        89 ~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  168 (266)
                        ..++ .+..+++|+.|++.+|.+. .++ .+.. +++++.+++.+|.+..  +..+..+++|+.+++++|++++ +++
T Consensus       103 --~~l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~-l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~  173 (210)
T d1h6ta2         103 --KDLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP  173 (210)
T ss_dssp             --CCGG-GGTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG
T ss_pred             --cccc-ccccccccccccccccccc-ccc-cccc-cccccccccccccccc--cccccccccccccccccccccc-ccc
Confidence              1122 2456677888888887775 333 3333 6788888888887752  3355677888888888887763 322


Q ss_pred             cccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccc
Q 048681          169 HLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH  234 (266)
Q Consensus       169 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  234 (266)
                       +                           ..+++|+.|++++|.++ .++ .+..+++|++|++++
T Consensus       174 -l---------------------------~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 -L---------------------------AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -G---------------------------TTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             -c---------------------------cCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence             1                           12678899999999887 455 478888999988864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.9e-16  Score=121.22  Aligned_cols=174  Identities=22%  Similarity=0.366  Sum_probs=134.5

Q ss_pred             CCCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCC
Q 048681            1 MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF   80 (266)
Q Consensus         1 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~   80 (266)
                      |++++++.++++|++|++++|.+....  .+.++++++++++++|.++. ++  ++..+ ++|+.++++.+....     
T Consensus        53 i~~l~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i~--~l~~l-~~L~~l~l~~~~~~~-----  121 (227)
T d1h6ua2          53 VTTIEGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-VS--AIAGL-QSIKTLDLTSTQITD-----  121 (227)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-CG--GGTTC-TTCCEEECTTSCCCC-----
T ss_pred             CCcchhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-cc--ccccc-ccccccccccccccc-----
Confidence            467788999999999999999998543  48999999999999999874 33  56676 999999998876211     


Q ss_pred             CCcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           81 PNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                                   ...+...+.++.+.++.+.+... . .+.. .++|+.|++.+|.+...  ..+..+++|+.|++++|
T Consensus       122 -------------~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~-~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         122 -------------VTPLAGLSNLQVLYLDLNQITNI-S-PLAG-LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN  183 (227)
T ss_dssp             -------------CGGGTTCTTCCEEECCSSCCCCC-G-GGGG-CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred             -------------cchhccccchhhhhchhhhhchh-h-hhcc-ccccccccccccccccc--hhhcccccceecccCCC
Confidence                         11234556788899988887632 2 2333 78999999999988632  34788999999999999


Q ss_pred             eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccc
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSH  234 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  234 (266)
                      ++++ ++. +.                           .+++|++|++++|.++ .++. ++.+++|+.|++++
T Consensus       184 ~l~~-l~~-l~---------------------------~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         184 KISD-ISP-LA---------------------------SLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCC-CGG-GG---------------------------GCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             ccCC-Chh-hc---------------------------CCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence            9873 432 21                           2689999999999998 5554 78999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4e-16  Score=119.26  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             CCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCccc
Q 048681            9 RLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLT   48 (266)
Q Consensus         9 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~   48 (266)
                      .++++++|++++|.+...  +.++.+++|++|++++|.++
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~   75 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT   75 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc
Confidence            345555555555555522  23555555555565555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=2.5e-16  Score=119.71  Aligned_cols=155  Identities=15%  Similarity=0.013  Sum_probs=89.9

Q ss_pred             CcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEEEccCcccccc
Q 048681           37 LKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGN  116 (266)
Q Consensus        37 L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~  116 (266)
                      .+++++++++++ .+|+ ++   ++.+++|++++|.+....               -+..+..+++|++|++++|.+. .
T Consensus        10 ~~~v~Cs~~~L~-~iP~-~l---p~~l~~L~Ls~N~i~~~~---------------~~~~f~~l~~L~~L~L~~N~i~-~   68 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPR-DI---PLHTTELLLNDNELGRIS---------------SDGLFGRLPHLVKLELKRNQLT-G   68 (192)
T ss_dssp             TTEEECTTSCCS-SCCS-CC---CTTCSEEECCSCCCCSBC---------------CSCSGGGCTTCCEEECCSSCCC-C
T ss_pred             CCEEEEeCCCcC-ccCC-CC---CCCCCEEEeCCCCCcccc---------------cccccCCCceEeeeeccccccc-c
Confidence            467888888888 5776 44   356677777776541110               1223456667777777777776 3


Q ss_pred             CCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhhhcccccccccCCC
Q 048681          117 IPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYK  196 (266)
Q Consensus       117 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  196 (266)
                      ++...+..+++|+.|++++|.+....+..|..+++|++|++++|++++ +++..+.                        
T Consensus        69 ~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~------------------------  123 (192)
T d1w8aa_          69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFE------------------------  123 (192)
T ss_dssp             BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSST------------------------
T ss_pred             ccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccc-cCHHHhc------------------------
Confidence            333333346677777777777765555666777777777777777763 3333321                        


Q ss_pred             CcCCCCccEEEccCCcccccCCccccccccCCeeeccccccccc
Q 048681          197 GKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       197 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                        .+++|++++|++|.+... .....-...++.+.+..+.++..
T Consensus       124 --~l~~L~~l~L~~N~~~~~-~~~~~~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_         124 --HLNSLTSLNLASNPFNCN-CHLAWFAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             --TCTTCCEEECTTCCBCCS-GGGHHHHHHHHHHCCSGGGCBBC
T ss_pred             --CCcccccccccccccccc-cchHHHhhhhhhhcccCCCeEeC
Confidence              256677777777776532 22111112344555555555533

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-16  Score=125.03  Aligned_cols=143  Identities=15%  Similarity=0.059  Sum_probs=83.7

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccC
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSW   90 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~   90 (266)
                      +++++|++++|.++...+.+|.++++|++|++++|.+...++...|..+ +.++++++..+....               
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l-~~l~~l~~~~~n~l~---------------   92 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKANNLL---------------   92 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESC-TTCCEEEEECCTTCC---------------
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccc-ccccccccccccccc---------------
Confidence            3677777777777755556677777777777777776654544345555 666666655432100               


Q ss_pred             cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCC-CCCCEEEccCCeeeecCCcc
Q 048681           91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDL-NSLKFLDLSHNQLTGEIPKH  169 (266)
Q Consensus        91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~  169 (266)
                      ...+..+..+++|+++++.++.+....+......+..+..+...++.+....+..+..+ ..++.+++.+|+++ .++..
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~  171 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNC  171 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTT
T ss_pred             ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccc
Confidence            11123456677888888888877632222222334556555666666654444455544 36777888888776 34433


Q ss_pred             c
Q 048681          170 L  170 (266)
Q Consensus       170 ~  170 (266)
                      .
T Consensus       172 ~  172 (242)
T d1xwdc1         172 A  172 (242)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.3e-16  Score=121.41  Aligned_cols=131  Identities=21%  Similarity=0.179  Sum_probs=105.4

Q ss_pred             CcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcc
Q 048681           13 LQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRP   92 (266)
Q Consensus        13 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (266)
                      .++++.++++++ .+|..+.  +++++|+|++|.|+..++...|..+ ++|+.|++++|.+..                .
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l-~~L~~L~L~~N~i~~----------------~   69 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTG----------------I   69 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCC----------------B
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCC-ceEeeeecccccccc----------------c
Confidence            457888888888 5565553  6899999999999866665466666 899999998887411                1


Q ss_pred             cccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeee
Q 048681           93 FRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        93 l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                      .+..+..+++|++|++++|+++ .+++..+..+++|++|++++|.++...+..|..+++|+++++++|.+..
T Consensus        70 ~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          70 EPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccccccceeeecccccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            2345667889999999999998 6777666669999999999999997777889999999999999998874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.1e-15  Score=115.21  Aligned_cols=165  Identities=18%  Similarity=0.320  Sum_probs=110.9

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCccc
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPF   93 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (266)
                      ....++.+.+++...  .+.+.++++|++++|.|+. + + ++..+ ++|++|++++|..                 ..+
T Consensus        21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~-~l~~l-~nL~~L~Ls~N~l-----------------~~~   77 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-D-GVEYL-NNLTQINFSNNQL-----------------TDI   77 (199)
T ss_dssp             HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-T-TGGGC-TTCCEEECCSSCC-----------------CCC
T ss_pred             HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-c-ccccC-CCcCcCccccccc-----------------cCc
Confidence            344566777664432  3567899999999999874 3 2 56666 8888888888763                 111


Q ss_pred             ccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCcccccc
Q 048681           94 RMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIG  173 (266)
Q Consensus        94 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  173 (266)
                      + .+..+++|++|++++|.+. .++. +. .++.|+.+++++|....  ...+..+++|+.+++++|++. .++. +.  
T Consensus        78 ~-~l~~l~~L~~L~l~~n~~~-~~~~-l~-~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~~-l~--  147 (199)
T d2omxa2          78 T-PLKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DISA-LS--  147 (199)
T ss_dssp             G-GGTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCGG-GT--
T ss_pred             c-cccCCcccccccccccccc-cccc-cc-ccccccccccccccccc--ccccchhhhhHHhhhhhhhhc-cccc-cc--
Confidence            2 1556777888888888776 4442 33 37788888888777652  234667788888888888775 3332 21  


Q ss_pred             ccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCccccccccCCeeeccccccc
Q 048681          174 CFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       174 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                                               .+++|+.|++.+|.+++ ++ .++++++|++|++++|+++
T Consensus       148 -------------------------~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         148 -------------------------GLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             -------------------------TCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             -------------------------ccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC
Confidence                                     25777888888888773 33 3677778887777777666

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=8.7e-15  Score=112.66  Aligned_cols=137  Identities=24%  Similarity=0.319  Sum_probs=108.0

Q ss_pred             CCCCccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCC
Q 048681            1 MNSISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF   80 (266)
Q Consensus         1 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~   80 (266)
                      |.+++++..+++|++|++++|.+++..  .++.+++|++|++++|.+++ ++  .+..+ ++|+.|+++++...      
T Consensus        58 i~~l~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~--~l~~l-~~L~~L~l~~~~~~------  125 (210)
T d1h6ta2          58 IKSVQGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS--SLKDL-KKLKSLSLEHNGIS------  125 (210)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG--GGTTC-TTCCEEECTTSCCC------
T ss_pred             CCCchhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc--ccccc-cccccccccccccc------
Confidence            356778899999999999999998543  47889999999999999984 33  46666 89999999988631      


Q ss_pred             CCcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 048681           81 PNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  160 (266)
                                 .+ ..+..++.++.+++++|.+++ .+ .+ ..+++|+++++++|.+.+ ++ .+..+++|+.|++++|
T Consensus       126 -----------~~-~~l~~l~~l~~l~~~~n~l~~-~~-~~-~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         126 -----------DI-NGLVHLPQLESLYLGNNKITD-IT-VL-SRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             -----------CC-GGGGGCTTCCEEECCSSCCCC-CG-GG-GGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSS
T ss_pred             -----------cc-ccccccccccccccccccccc-cc-cc-cccccccccccccccccc-cc-cccCCCCCCEEECCCC
Confidence                       11 235667889999999999873 22 33 338899999999999973 33 4789999999999999


Q ss_pred             eeeecCC
Q 048681          161 QLTGEIP  167 (266)
Q Consensus       161 ~~~~~~~  167 (266)
                      +++ .++
T Consensus       189 ~i~-~l~  194 (210)
T d1h6ta2         189 HIS-DLR  194 (210)
T ss_dssp             CCC-BCG
T ss_pred             CCC-CCh
Confidence            987 454

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=4.3e-14  Score=116.48  Aligned_cols=61  Identities=31%  Similarity=0.429  Sum_probs=49.0

Q ss_pred             CCCccEEEccCCcccccCCccccccccCCeeecccccccccCC------eEEeeCCeeeecCChhhhhcccC
Q 048681          200 LNKMYGIDLSCNKLVGEIPPQIGKLTRVRALNLSHNNLTGVIP------SLDVSYNNLNGKIPPQLVELNAL  265 (266)
Q Consensus       200 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~l~l~~n~i~~~~p~~~~~~~~l  265 (266)
                      +++|++|++++|.++ .+|..   +++|+.|++++|+++..++      +|++++|+++ .+|+....++.|
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~L~-~lp~~~~~L~~L  349 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLR-EFPDIPESVEDL  349 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCCCTTCCEE
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCccccccCCCCEEECcCCcCC-CCCccccccCee
Confidence            578999999999998 67753   5789999999999986533      8999999998 677655555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.4e-15  Score=115.37  Aligned_cols=209  Identities=15%  Similarity=0.119  Sum_probs=134.2

Q ss_pred             ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCccee
Q 048681            7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTI   86 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~   86 (266)
                      .|++.. +.++.++..++ .+|+.+.  +++++|++++|.|+. ++...|.++ ++|++|++++|.....+.        
T Consensus         5 ~C~C~~-~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~-l~~~~f~~l-~~L~~L~ls~n~~~~~i~--------   70 (242)
T d1xwdc1           5 ICHCSN-RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRV-IQKGAFSGF-GDLEKIEISQNDVLEVIE--------   70 (242)
T ss_dssp             SEEECS-SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCE-ECTTTTTTC-TTCCEEEEESCTTCCEEC--------
T ss_pred             cCCCcC-CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCc-cChhHhhcc-chhhhhhhccccccceee--------
Confidence            345543 57888888888 5565543  589999999999984 555367777 999999999987422110        


Q ss_pred             cccCcccccCcccccCccEEEccC-ccccccCCccccccCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCeeee
Q 048681           87 TMSWRPFRMPIQSHWHLATLYVSK-KFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIP-SSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus        87 ~~~~~~l~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~  164 (266)
                             +..+..++.++++.+.. +.+. ..++..+..+++|+.+++.+|.+....+ ..+..++.+..+...++++. 
T Consensus        71 -------~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-  141 (242)
T d1xwdc1          71 -------ADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-  141 (242)
T ss_dssp             -------SSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-
T ss_pred             -------cccccccccccccccccccccc-ccccccccccccccccccchhhhcccccccccccccccccccccccccc-
Confidence                   23356778889988765 5565 4455555558999999999998863322 22334556666666777776 


Q ss_pred             cCCccccccc-cchhHHHhhhcccccccccCCCCcCCCCccEE-EccCCcccccCC-ccccccccCCeeecccccccccC
Q 048681          165 EIPKHLAIGC-FNLEYLVESLMFTTKETSYSYKGKPLNKMYGI-DLSCNKLVGEIP-PQIGKLTRVRALNLSHNNLTGVI  241 (266)
Q Consensus       165 ~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~  241 (266)
                      .++...+.++ ..+..+++..+.........+   ....+..+ ++.+|.++ .+| ..|.++++|++|++++|+++..+
T Consensus       142 ~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~---~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAF---NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCEECTTTT---TTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             cccccccccccccceeeecccccccccccccc---cchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccC
Confidence            4444443333 345555555444443333222   23444444 56777787 454 45788899999999988888554


Q ss_pred             C
Q 048681          242 P  242 (266)
Q Consensus       242 ~  242 (266)
                      +
T Consensus       218 ~  218 (242)
T d1xwdc1         218 S  218 (242)
T ss_dssp             S
T ss_pred             H
Confidence            4

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.6e-16  Score=124.99  Aligned_cols=213  Identities=18%  Similarity=0.232  Sum_probs=137.4

Q ss_pred             ccCCCCCcEEECCCccCccC-CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681            7 LFRLRNLQELHMGANDLRGT-LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT   85 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~   85 (266)
                      .....+|++|++++|.+... ++..+..+++|++|++++|.+++..+. .+.++ ++|++|+++++....+.        
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-~l~~~-~~L~~L~Ls~c~~itd~--------  111 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKN-SNLVRLNLSGCSGFSEF--------  111 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTC-TTCSEEECTTCBSCCHH--------
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHH-HHhcC-CCCcCcccccccccccc--------
Confidence            34567888999998887643 344566788999999999988765555 66666 78888888886521110        


Q ss_pred             ecccCcccccCcccccCccEEEccCcc-cccc-CCccccccCCCCcEEEccccc--cccc-CCccccCCCCCCEEEccCC
Q 048681           86 ITMSWRPFRMPIQSHWHLATLYVSKKF-FQGN-IPLEIGVYFPRLMYLNLSRNE--FDGS-IPSSIGDLNSLKFLDLSHN  160 (266)
Q Consensus        86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~-~~~~-~~~~~~~~~~~L~~L~l~~~~--~~~~-~~~~l~~l~~L~~L~l~~n  160 (266)
                            .+..-...+++|++|++++|. +++. +...+....++|+.|+++++.  ++.. +......+++|++|++++|
T Consensus       112 ------~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         112 ------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             ------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             ------ccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc
Confidence                  011112346788888888863 3321 222233334678888888763  2211 2223456788888888876


Q ss_pred             e-eeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCC-cccccCCccccccccCCeeeccccccc
Q 048681          161 Q-LTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCN-KLVGEIPPQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       161 ~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~  238 (266)
                      . +++.....+.                           .++.|++|++++| .+++.....++++++|+.|++.++ ++
T Consensus       186 ~~itd~~~~~l~---------------------------~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~  237 (284)
T d2astb2         186 VMLKNDCFQEFF---------------------------QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP  237 (284)
T ss_dssp             TTCCGGGGGGGG---------------------------GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             cCCCchhhhhhc---------------------------ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CC
Confidence            4 4432222221                           2678999999985 577666666788899999999887 33


Q ss_pred             --------ccCCeEEeeCCeeeecCChhhhhcc
Q 048681          239 --------GVIPSLDVSYNNLNGKIPPQLVELN  263 (266)
Q Consensus       239 --------~~~~~l~l~~n~i~~~~p~~~~~~~  263 (266)
                              ...|.|.+..+++++..++++++.+
T Consensus       238 d~~l~~l~~~lp~L~i~~~~ls~~~~~~~~~~~  270 (284)
T d2astb2         238 DGTLQLLKEALPHLQINCSHFTTIARPTIGNKK  270 (284)
T ss_dssp             TTCHHHHHHHSTTSEESCCCSCCTTCSSCSSTT
T ss_pred             HHHHHHHHHhCccccccCccCCCCCCCccCccc
Confidence                    2366788888888866666665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.3e-15  Score=109.05  Aligned_cols=114  Identities=18%  Similarity=0.176  Sum_probs=83.7

Q ss_pred             CccccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681            4 ISGLFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS   83 (266)
Q Consensus         4 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~   83 (266)
                      .+.|.++.++++|++++|.|+.+ +..+..+++|+.|++++|.|+. ++  ++                           
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~--~~---------------------------   59 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD--GF---------------------------   59 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC--CC---------------------------
T ss_pred             hHhccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC--Cc---------------------------
Confidence            45677888899999999998844 6667788899999999998873 32  22                           


Q ss_pred             ceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccC-CccccCCCCCCEEEccCCee
Q 048681           84 FTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSI-PSSIGDLNSLKFLDLSHNQL  162 (266)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~~  162 (266)
                                    ..+++|++|++++|.++ .+++.++..+++|+.|++++|.+.... ...+..+++|+.+++++|.+
T Consensus        60 --------------~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          60 --------------PLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             --------------CCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             --------------ccCcchhhhhccccccc-CCCccccccccccccceeccccccccccccccccccccchhhcCCCcc
Confidence                          23466778888888876 566655555788888888888876321 14567788888888888887


Q ss_pred             e
Q 048681          163 T  163 (266)
Q Consensus       163 ~  163 (266)
                      +
T Consensus       125 ~  125 (162)
T d1a9na_         125 T  125 (162)
T ss_dssp             G
T ss_pred             c
Confidence            6

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=4.8e-13  Score=93.81  Aligned_cols=54  Identities=30%  Similarity=0.394  Sum_probs=37.0

Q ss_pred             cEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccch
Q 048681           14 QELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYL   72 (266)
Q Consensus        14 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~   72 (266)
                      +.|++++|+++ .++ .+..+++|++|++++|.|+ .+|. .+..+ ++|++|++++|.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~-~~~~l-~~L~~L~l~~N~   54 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPP-ALAAL-RCLEVLQASDNA   54 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCG-GGGGC-TTCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchh-hhhhh-hccccccccccc
Confidence            46889999888 444 4888889999999999887 4565 55554 444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.8e-13  Score=100.71  Aligned_cols=110  Identities=20%  Similarity=0.202  Sum_probs=75.1

Q ss_pred             cccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccc
Q 048681           97 IQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFN  176 (266)
Q Consensus        97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  176 (266)
                      +.+..++++|++++|+++ .++.. +..+++|+.|++++|.+. .+ +.+..+++|+.|++++|+++ .+++.++..   
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~-~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~---   85 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQA---   85 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCC-EECSCHHHH---
T ss_pred             ccCcCcCcEEECCCCCCC-ccCcc-ccccccCCEEECCCCCCC-cc-CCcccCcchhhhhccccccc-CCCcccccc---
Confidence            345667899999999997 66643 344889999999999987 44 35778899999999999987 455444333   


Q ss_pred             hhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC--ccccccccCCeeeccccccc
Q 048681          177 LEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP--PQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       177 l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~  238 (266)
                                             ++.|+.|++++|.++. ++  ..+..+++|+++++.+|+++
T Consensus        86 -----------------------l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          86 -----------------------LPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             -----------------------CTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             -----------------------ccccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence                                   4556666666666552 22  23455566666666666555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=1e-12  Score=92.09  Aligned_cols=103  Identities=23%  Similarity=0.302  Sum_probs=59.7

Q ss_pred             cEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccccccccchhHHHhh
Q 048681          104 ATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHLAIGCFNLEYLVES  183 (266)
Q Consensus       104 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~  183 (266)
                      |.|++++|+++ .++. +.. +++|++|++++|.+. .+|..+..+++|+.|++++|+++ .++. +.            
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~-l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~------------   62 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VA------------   62 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-GT------------
T ss_pred             CEEEcCCCCCC-CCcc-ccc-CCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-cc------------
Confidence            35666666665 4442 333 566666677666665 45555666666667777666665 2322 11            


Q ss_pred             hcccccccccCCCCcCCCCccEEEccCCcccccC-CccccccccCCeeecccccccc
Q 048681          184 LMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEI-PPQIGKLTRVRALNLSHNNLTG  239 (266)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~  239 (266)
                                     .++.|+.+++++|.+++.. ...+..+++|+.+++++|++++
T Consensus        63 ---------------~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          63 ---------------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             ---------------TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ---------------cccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence                           2556666666666665221 1345566666666666666653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.7e-14  Score=114.17  Aligned_cols=188  Identities=16%  Similarity=0.128  Sum_probs=122.9

Q ss_pred             ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCC-cccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681            7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLN-QLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT   85 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~   85 (266)
                      +.++++|++|++++|.+....+..++.+++|++|++++| .+++..-. .+...+++|++|+++++....+.        
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~-~l~~~~~~L~~L~ls~c~~~~~~--------  137 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEK--------  137 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHH--------
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccc-hhhHHHHhccccccccccccccc--------
Confidence            578999999999999998777888999999999999996 46532222 33444599999999987521110        


Q ss_pred             ecccCcccccCccc-ccCccEEEccCcc--ccccCCccccccCCCCcEEEccccc-ccccCCccccCCCCCCEEEccCC-
Q 048681           86 ITMSWRPFRMPIQS-HWHLATLYVSKKF--FQGNIPLEIGVYFPRLMYLNLSRNE-FDGSIPSSIGDLNSLKFLDLSHN-  160 (266)
Q Consensus        86 ~~~~~~~l~~~~~~-~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n-  160 (266)
                            .+...+.. .+.|+.|+++++.  +++..-..+...+++|++|++++|. ++......+..+++|++|++++| 
T Consensus       138 ------~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~  211 (284)
T d2astb2         138 ------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  211 (284)
T ss_dssp             ------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             ------cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCC
Confidence                  00111122 3579999998753  3322222333447899999999875 55556677888999999999996 


Q ss_pred             eeeecCCccccccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCCcc-ccccccCCeeecccccccc
Q 048681          161 QLTGEIPKHLAIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIPPQ-IGKLTRVRALNLSHNNLTG  239 (266)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~  239 (266)
                      .+++.....+                           ..+++|+.|++.++ +.+..... ...+++   |.+..+++++
T Consensus       212 ~i~~~~l~~L---------------------------~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~---L~i~~~~ls~  260 (284)
T d2astb2         212 DIIPETLLEL---------------------------GEIPTLKTLQVFGI-VPDGTLQLLKEALPH---LQINCSHFTT  260 (284)
T ss_dssp             TCCGGGGGGG---------------------------GGCTTCCEEECTTS-SCTTCHHHHHHHSTT---SEESCCCSCC
T ss_pred             CCChHHHHHH---------------------------hcCCCCCEEeeeCC-CCHHHHHHHHHhCcc---ccccCccCCC
Confidence            3442211111                           12678999999887 44222222 233444   4456666764


Q ss_pred             c
Q 048681          240 V  240 (266)
Q Consensus       240 ~  240 (266)
                      .
T Consensus       261 ~  261 (284)
T d2astb2         261 I  261 (284)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.39  E-value=8.7e-12  Score=102.30  Aligned_cols=92  Identities=20%  Similarity=0.181  Sum_probs=55.2

Q ss_pred             CCCcEEECCCccCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcc-e---e
Q 048681           11 RNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSF-T---I   86 (266)
Q Consensus        11 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~-~---~   86 (266)
                      .++++|+++++.++ .+|+.   .++|++|++++|+|+ .+|. .    +.+|+.|++++|... .+..++..+ .   .
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~-~----~~~L~~L~l~~n~l~-~l~~lp~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE-L----PQSLKSLLVDNNNLK-ALSDLPPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC-C----CTTCCEEECCSSCCS-CCCSCCTTCCEEECC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc-c----hhhhhhhhhhhcccc-hhhhhcccccccccc
Confidence            46888999999887 45643   468889999999887 5665 3    267788888777631 112222211 1   2


Q ss_pred             cccCcccccCcccccCccEEEccCcccc
Q 048681           87 TMSWRPFRMPIQSHWHLATLYVSKKFFQ  114 (266)
Q Consensus        87 ~~~~~~l~~~~~~~~~L~~L~l~~n~~~  114 (266)
                      ...+..+|. +..+++|++|+++++.+.
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccc-hhhhccceeecccccccc
Confidence            222333443 345566666666665554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.30  E-value=8.3e-14  Score=115.05  Aligned_cols=66  Identities=18%  Similarity=0.099  Sum_probs=43.7

Q ss_pred             cccCCCCCcEEECCCccCccC----------CChhhhcCCCCcEEeccCCcccccCCCCcch---hhcccccccccccch
Q 048681            6 GLFRLRNLQELHMGANDLRGT----------LPWCLENITSLKVLDLYLNQLTRNISSSPLL---HLITSIEYLSTLNYL   72 (266)
Q Consensus         6 ~~~~l~~L~~L~l~~n~i~~~----------~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---~~~~~L~~L~~~~~~   72 (266)
                      .+...++|+.++++++.....          +.+.+...++|++|++++|.++..... .+.   ...+.|+.|++++|.
T Consensus        54 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          54 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE-PLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH-HHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc-chhhhhcccccchheeccccc
Confidence            456778899999987755422          223344578899999999988653221 222   123788899998886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=1.9e-13  Score=103.88  Aligned_cols=114  Identities=22%  Similarity=0.216  Sum_probs=65.7

Q ss_pred             CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCcceecccCcccccCcccccCccEE
Q 048681           27 LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATL  106 (266)
Q Consensus        27 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L  106 (266)
                      ++.++..+++|++|++++|.|+. ++  ++..+ ++|+.|++++|.+                 ..++.....++.|++|
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~--~l~~l-~~L~~L~Ls~N~i-----------------~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS--SLSGM-ENLRILSLGRNLI-----------------KKIENLDAVADTLEEL   98 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC--CHHHH-TTCCEEECCEEEE-----------------CSCSSHHHHHHHCCEE
T ss_pred             hhhHHhcccccceeECcccCCCC-cc--cccCC-ccccChhhccccc-----------------cccccccccccccccc
Confidence            44566667777777777776663 32  45555 6677777766653                 1122222334456777


Q ss_pred             EccCccccccCCccccccCCCCcEEEcccccccccC-CccccCCCCCCEEEccCCeeee
Q 048681          107 YVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSI-PSSIGDLNSLKFLDLSHNQLTG  164 (266)
Q Consensus       107 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~~~~  164 (266)
                      ++++|.++ .++ .+.. +++|+.|++++|.++... ...+..+++|+.|++++|++..
T Consensus        99 ~l~~N~i~-~l~-~~~~-l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          99 WISYNQIA-SLS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ECSEEECC-CHH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccc-ccc-cccc-cccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            77777665 332 2333 566777777777665221 1345666777777777776653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=2.1e-13  Score=112.61  Aligned_cols=222  Identities=14%  Similarity=0.098  Sum_probs=111.4

Q ss_pred             ccccCCCCCcEEECCCccCccCCCh----hhhcCCCCcEEeccCCccccc---CCC------Ccchhhcccccccccccc
Q 048681            5 SGLFRLRNLQELHMGANDLRGTLPW----CLENITSLKVLDLYLNQLTRN---ISS------SPLLHLITSIEYLSTLNY   71 (266)
Q Consensus         5 ~~~~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~i~~~---~~~------~~~~~~~~~L~~L~~~~~   71 (266)
                      ..+.+...|++|++++|.+......    .+...++|+.++++++.....   .+.      ..+... ++|+.|++++|
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~n  103 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDN  103 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhC-CCccccccccc
Confidence            3455678899999999988654333    344678899999988754321   111      012223 67888888877


Q ss_pred             hhhhhccCCCCcceecccCcccccCcccccCccEEEccCccccccCCccc------------cccCCCCcEEEccccccc
Q 048681           72 LVLVSMLHFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEI------------GVYFPRLMYLNLSRNEFD  139 (266)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~------------~~~~~~L~~L~l~~~~~~  139 (266)
                      .....            .+..+...+...+.|++|++++|.+.......+            ....+.|+.+.+++|.+.
T Consensus       104 ~i~~~------------~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1         104 AFGPT------------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CCCTT------------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             ccccc------------cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            62110            011122223345567777777766542110000            112446667777666654


Q ss_pred             cc----CCccccCCCCCCEEEccCCeeeecCC----ccccccccchhHHHhhhccccccc--ccCCCCcCCCCccEEEcc
Q 048681          140 GS----IPSSIGDLNSLKFLDLSHNQLTGEIP----KHLAIGCFNLEYLVESLMFTTKET--SYSYKGKPLNKMYGIDLS  209 (266)
Q Consensus       140 ~~----~~~~l~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~L~~L~L~  209 (266)
                      ..    +...+...++++.|++++|++.....    ......+.+++.++++.+......  .........+.|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            21    22334455667777777766642100    011122333333333333221110  111112235666777777


Q ss_pred             CCcccccCCc----cccc--cccCCeeecccccccc
Q 048681          210 CNKLVGEIPP----QIGK--LTRVRALNLSHNNLTG  239 (266)
Q Consensus       210 ~n~i~~~~~~----~~~~--l~~L~~L~l~~n~l~~  239 (266)
                      +|.+++....    .+..  .+.|++|++++|.++.
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            7766543222    2222  3456677777776653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.9e-10  Score=83.62  Aligned_cols=112  Identities=23%  Similarity=0.137  Sum_probs=82.4

Q ss_pred             ccCCCCCcEEECCCccCccCCChhhhcCCCCcEEeccCCc-ccccCCCCcchhhcccccccccccchhhhhccCCCCcce
Q 048681            7 LFRLRNLQELHMGANDLRGTLPWCLENITSLKVLDLYLNQ-LTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFT   85 (266)
Q Consensus         7 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~   85 (266)
                      .+.+...+.++.+++.+. ..|..+..+++|++|++.+|+ ++. ++..+|                             
T Consensus         4 ~C~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~-i~~~~f-----------------------------   52 (156)
T d2ifga3           4 ACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQH-LELRDL-----------------------------   52 (156)
T ss_dssp             SSCCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCE-ECGGGS-----------------------------
T ss_pred             CCCcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccc-cCchhh-----------------------------
Confidence            455666778888888877 567778888899999987664 653 332123                             


Q ss_pred             ecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeee
Q 048681           86 ITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLT  163 (266)
Q Consensus        86 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  163 (266)
                                  ..+++|+.|++++|+++ .+++..+..+++|++|++++|.+. .++.......+++.|++++|.+.
T Consensus        53 ------------~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          53 ------------RGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             ------------CSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ------------ccccccCcceeeccccC-CcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence                        34567888888888887 666666666889999999999997 55555445557999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.7e-12  Score=110.25  Aligned_cols=159  Identities=16%  Similarity=0.053  Sum_probs=95.5

Q ss_pred             ccCccEEEccCccccccC----CccccccCCCCcEEEcccccccccCC----ccc-cCCCCCCEEEccCCeeeecCCccc
Q 048681          100 HWHLATLYVSKKFFQGNI----PLEIGVYFPRLMYLNLSRNEFDGSIP----SSI-GDLNSLKFLDLSHNQLTGEIPKHL  170 (266)
Q Consensus       100 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l-~~l~~L~~L~l~~n~~~~~~~~~~  170 (266)
                      ...++.+++++|.+....    ...+.. .+.++.+++++|.+.....    ..+ .....|+.++++++.++......+
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~-~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            346777888777765221    111222 6789999999998853211    122 234678999999988764322222


Q ss_pred             ---cccccchhHHHhhhcccccccccCC--C-CcCCCCccEEEccCCccccc----CCccccccccCCeeeccccccccc
Q 048681          171 ---AIGCFNLEYLVESLMFTTKETSYSY--K-GKPLNKMYGIDLSCNKLVGE----IPPQIGKLTRVRALNLSHNNLTGV  240 (266)
Q Consensus       171 ---~~~~~~l~~l~~~~~~~~~~~~~~~--~-~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~  240 (266)
                         .....+++.|+++.+...+......  . ....+.|+.|+|++|.+++.    +...+..+++|++|++++|+++..
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence               1234456666666554433221111  1 11246688888888888743    334456678888888888888632


Q ss_pred             ---------------CCeEEeeCCeeeecCChhh
Q 048681          241 ---------------IPSLDVSYNNLNGKIPPQL  259 (266)
Q Consensus       241 ---------------~~~l~l~~n~i~~~~p~~~  259 (266)
                                     +..|++.+|.+..+.+..+
T Consensus       413 g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence                           3478888888776555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=6.1e-13  Score=101.08  Aligned_cols=114  Identities=20%  Similarity=0.215  Sum_probs=73.6

Q ss_pred             cccccCcccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCccccCCCCCCEEEccCCeeeecCCccc
Q 048681           91 RPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPSSIGDLNSLKFLDLSHNQLTGEIPKHL  170 (266)
Q Consensus        91 ~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  170 (266)
                      +.++.++..+++|++|++++|+++ .++ .+.. +++|+.|++++|.+. .++.....+++|+.|++++|++++ ++. +
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~-l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~~-~  111 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSG-I  111 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEES-CCC-CHHH-HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HHH-H
T ss_pred             hhhhhHHhcccccceeECcccCCC-Ccc-cccC-CccccChhhcccccc-cccccccccccccccccccccccc-ccc-c
Confidence            344556777888888999888887 554 3444 788899999888886 555555556778888888888873 321 1


Q ss_pred             cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccccCC--ccccccccCCeeeccccccc
Q 048681          171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVGEIP--PQIGKLTRVRALNLSHNNLT  238 (266)
Q Consensus       171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~  238 (266)
                       ..                          +++|+.|++++|.+++ ++  ..+..+++|+.|++++|++.
T Consensus       112 -~~--------------------------l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         112 -EK--------------------------LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             -HH--------------------------HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             -cc--------------------------cccccccccccchhcc-ccccccccCCCccceeecCCCccc
Confidence             12                          3455566666665552 22  23455566666666665554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.6e-10  Score=84.04  Aligned_cols=94  Identities=20%  Similarity=0.127  Sum_probs=74.2

Q ss_pred             CCCccccCCCCCcEEECCCc-cCccCCChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCC
Q 048681            2 NSISGLFRLRNLQELHMGAN-DLRGTLPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHF   80 (266)
Q Consensus         2 ~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~   80 (266)
                      +.|..+..+++|++|+++++ .++.+.+.+|.++++|+.|++++|+|+...+. .|..+                     
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l---------------------   79 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFT---------------------   79 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSC---------------------
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc-ccccc---------------------
Confidence            45778889999999999866 59888888999999999999999999854333 44444                     


Q ss_pred             CCcceecccCcccccCcccccCccEEEccCccccccCCccccccCCCCcEEEccccccc
Q 048681           81 PNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFD  139 (266)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  139 (266)
                                          ++|++|++++|+++ .+|...+. ..+|+.|++++|.+.
T Consensus        80 --------------------~~L~~L~Ls~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          80 --------------------PRLSRLNLSFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             --------------------SCCCEEECCSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             --------------------ccccceeccCCCCc-ccChhhhc-cccccccccCCCccc
Confidence                                56778888888887 77777666 347888888888774

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.3e-09  Score=92.07  Aligned_cols=143  Identities=22%  Similarity=0.152  Sum_probs=80.1

Q ss_pred             cCCCCCcEEECCCccCccC----CChhhhcCCCCcEEeccCCcccccCCCCcch----hhcccccccccccchhhh-hcc
Q 048681            8 FRLRNLQELHMGANDLRGT----LPWCLENITSLKVLDLYLNQLTRNISSSPLL----HLITSIEYLSTLNYLVLV-SML   78 (266)
Q Consensus         8 ~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----~~~~~L~~L~~~~~~~~~-~~~   78 (266)
                      .....++.+++++|.+...    ....+...+.++.+++++|.+++.... .+.    .....|+.+++.++.... .+ 
T Consensus       252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~-~l~~~l~~~~~~L~~l~l~~~~l~~~~~-  329 (460)
T d1z7xw1         252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR-LLCETLLEPGCQLESLWVKSCSFTAACC-  329 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCBGGGH-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-hhhccccccccccccccccccchhhhhh-
Confidence            4577899999999988743    233445689999999999998743221 121    111355566665554210 00 


Q ss_pred             CCCCcceecccCcccccCcccccCccEEEccCcccccc----CCccccccCCCCcEEEccccccccc----CCccccCCC
Q 048681           79 HFPNSFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGN----IPLEIGVYFPRLMYLNLSRNEFDGS----IPSSIGDLN  150 (266)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~  150 (266)
                                  ..+...+...+.|++|++++|.+++.    ++..+....+.|++|++++|.++..    ++..+..++
T Consensus       330 ------------~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  397 (460)
T d1z7xw1         330 ------------SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  397 (460)
T ss_dssp             ------------HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             ------------hhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC
Confidence                        00111123344567777777766532    2222222244567777777766521    233445556


Q ss_pred             CCCEEEccCCeeee
Q 048681          151 SLKFLDLSHNQLTG  164 (266)
Q Consensus       151 ~L~~L~l~~n~~~~  164 (266)
                      +|++|++++|++++
T Consensus       398 ~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         398 SLRELDLSNNCLGD  411 (460)
T ss_dssp             CCCEEECCSSSCCH
T ss_pred             CCCEEECCCCcCCH
Confidence            67777777766653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.3e-08  Score=71.21  Aligned_cols=58  Identities=19%  Similarity=0.033  Sum_probs=32.4

Q ss_pred             ccccCccEEEccCccccccCCccccccCCCCcEEEcccccccccCCc-------cccCCCCCCEEE
Q 048681           98 QSHWHLATLYVSKKFFQGNIPLEIGVYFPRLMYLNLSRNEFDGSIPS-------SIGDLNSLKFLD  156 (266)
Q Consensus        98 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~l~~l~~L~~L~  156 (266)
                      ..+++|+.|++++|+++ .+++.......+|+.+++.+|.+......       .+..+|+|+.||
T Consensus        88 ~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          88 QKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            34566677777777766 33332222244677777777776533221       244567777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.99  E-value=1e-06  Score=64.03  Aligned_cols=116  Identities=14%  Similarity=0.142  Sum_probs=72.2

Q ss_pred             CCCCCcEEECCCc-cCccC----CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCCc
Q 048681            9 RLRNLQELHMGAN-DLRGT----LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPNS   83 (266)
Q Consensus         9 ~l~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~   83 (266)
                      +.++|++|+++++ .+...    +..++...+.|++|++++|.++..... .+...                        
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~-~la~~------------------------   67 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR-GLIEL------------------------   67 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT-THHHH------------------------
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHH-HHhhh------------------------
Confidence            5688999999874 56533    333455668899999999988653332 33322                        


Q ss_pred             ceecccCcccccCcccccCccEEEccCccccccCCcccccc---CCCCcEEEcccccccc-------cCCccccCCCCCC
Q 048681           84 FTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNIPLEIGVY---FPRLMYLNLSRNEFDG-------SIPSSIGDLNSLK  153 (266)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~  153 (266)
                                   +...+.|++|++++|.+++.-...++..   .+.|++|++++|....       .+...+...++|+
T Consensus        68 -------------L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~  134 (167)
T d1pgva_          68 -------------IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL  134 (167)
T ss_dssp             -------------HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC
T ss_pred             -------------hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCcc
Confidence                         2234567888888887764322222211   4568888888775431       1344556678888


Q ss_pred             EEEccCCee
Q 048681          154 FLDLSHNQL  162 (266)
Q Consensus       154 ~L~l~~n~~  162 (266)
                      .|+++.+..
T Consensus       135 ~l~l~~~~~  143 (167)
T d1pgva_         135 RVGISFASM  143 (167)
T ss_dssp             EEECCCCCH
T ss_pred             EeeCcCCCc
Confidence            888876544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.1e-06  Score=63.59  Aligned_cols=88  Identities=24%  Similarity=0.206  Sum_probs=51.8

Q ss_pred             CChhhhcCCCCcEEeccCCcccccCC-CCcchhhcccccccccccchhhhhccCCCCcceecccCccccc-CcccccCcc
Q 048681           27 LPWCLENITSLKVLDLYLNQLTRNIS-SSPLLHLITSIEYLSTLNYLVLVSMLHFPNSFTITMSWRPFRM-PIQSHWHLA  104 (266)
Q Consensus        27 ~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~  104 (266)
                      ++..+.++++|++|++++|+|+...+ ...+..+ ++|+.|++++|.+..                 ++. ......+|+
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l-~~L~~L~Ls~N~i~~-----------------l~~l~~l~~~~L~  118 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKS-----------------ERELDKIKGLKLE  118 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHS-TTCCCCCCTTSCCCC-----------------GGGHHHHTTCCCS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhC-CcccccccccCcccc-----------------chhhhhhhccccc
Confidence            34444567888888888888774322 1133344 788888888877311                 111 111234678


Q ss_pred             EEEccCccccccCCc------cccccCCCCcEEE
Q 048681          105 TLYVSKKFFQGNIPL------EIGVYFPRLMYLN  132 (266)
Q Consensus       105 ~L~l~~n~~~~~~~~------~~~~~~~~L~~L~  132 (266)
                      ++++.+|.+......      .+...+++|+.||
T Consensus       119 ~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            888888888643322      2234478888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.57  E-value=5.2e-06  Score=60.13  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=65.3

Q ss_pred             ccCccEEEccCc-ccccc----CCccccccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeecCCccc
Q 048681          100 HWHLATLYVSKK-FFQGN----IPLEIGVYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIPKHL  170 (266)
Q Consensus       100 ~~~L~~L~l~~n-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  170 (266)
                      .+.|++|+++++ .+...    +...+.. .+.|+.|++++|.+...    +...+...++|+.|++++|.+++.....+
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~-n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhh-CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            467888888764 45422    1111222 45788888888887532    23345566788888888887764222222


Q ss_pred             cccccchhHHHhhhcccccccccCCCCcCCCCccEEEccCCcccc-------cCCccccccccCCeeeccccc
Q 048681          171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDLSCNKLVG-------EIPPQIGKLTRVRALNLSHNN  236 (266)
Q Consensus       171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~l~~n~  236 (266)
                      +..+                       ...++|++|++++|.+..       .+...+...+.|+.|+++.+.
T Consensus        93 ~~aL-----------------------~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRST-----------------------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHT-----------------------TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHH-----------------------HhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            1111                       113678888887775431       133445556777777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=2e-05  Score=56.75  Aligned_cols=117  Identities=14%  Similarity=0.156  Sum_probs=72.4

Q ss_pred             cCCCCCcEEECCC-ccCccC----CChhhhcCCCCcEEeccCCcccccCCCCcchhhcccccccccccchhhhhccCCCC
Q 048681            8 FRLRNLQELHMGA-NDLRGT----LPWCLENITSLKVLDLYLNQLTRNISSSPLLHLITSIEYLSTLNYLVLVSMLHFPN   82 (266)
Q Consensus         8 ~~l~~L~~L~l~~-n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~   82 (266)
                      .+.++|++|++++ +.++..    +..++...++|++|++++|.++..... .+...                       
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~-~L~~~-----------------------   69 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF-ALAEM-----------------------   69 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH-HHHHH-----------------------
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHH-HHHHH-----------------------
Confidence            4668999999987 456533    334445678899999999987653222 22222                       


Q ss_pred             cceecccCcccccCcccccCccEEEccCccccccC----CccccccCCCCcEEEcc--cccccc----cCCccccCCCCC
Q 048681           83 SFTITMSWRPFRMPIQSHWHLATLYVSKKFFQGNI----PLEIGVYFPRLMYLNLS--RNEFDG----SIPSSIGDLNSL  152 (266)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~--~~~~~~----~~~~~l~~l~~L  152 (266)
                                    +.....++.+++.+|.+.+..    ...+.. .+.|+.+++.  +|.+..    .+...+...++|
T Consensus        70 --------------l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~-~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L  134 (166)
T d1io0a_          70 --------------LKVNNTLKSLNVESNFISGSGILALVEALQS-NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTL  134 (166)
T ss_dssp             --------------HHHCSSCCEEECCSSCCCHHHHHHHHHGGGG-CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred             --------------HhhcccchhhhhccccccchhHHHHHHHHHh-CccccEEeeccCCCcCcHHHHHHHHHHHHhCCCc
Confidence                          223456778888877775332    122223 5677776554  455542    244556678889


Q ss_pred             CEEEccCCeee
Q 048681          153 KFLDLSHNQLT  163 (266)
Q Consensus       153 ~~L~l~~n~~~  163 (266)
                      +.|++..+...
T Consensus       135 ~~L~l~~~~~~  145 (166)
T d1io0a_         135 LKFGYHFTQQG  145 (166)
T ss_dssp             CEEECCCSSHH
T ss_pred             CEEeCcCCCCc
Confidence            99998776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.05  E-value=3.2e-05  Score=55.70  Aligned_cols=116  Identities=11%  Similarity=0.055  Sum_probs=69.9

Q ss_pred             cccCccEEEccC-ccccccCCcccc---ccCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCeeeecCCccc
Q 048681           99 SHWHLATLYVSK-KFFQGNIPLEIG---VYFPRLMYLNLSRNEFDGS----IPSSIGDLNSLKFLDLSHNQLTGEIPKHL  170 (266)
Q Consensus        99 ~~~~L~~L~l~~-n~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  170 (266)
                      +.+.|++|++++ +.+++..-..++   ...+.|++|++++|.++..    +...+...++++.+++.+|.++......+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            457888888887 455432211122   1366889999999987532    33455667888999998887764322222


Q ss_pred             cccccchhHHHhhhcccccccccCCCCcCCCCccEEEc--cCCcccc----cCCccccccccCCeeecccccc
Q 048681          171 AIGCFNLEYLVESLMFTTKETSYSYKGKPLNKMYGIDL--SCNKLVG----EIPPQIGKLTRVRALNLSHNNL  237 (266)
Q Consensus       171 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l  237 (266)
                      ...+.                       ..+.|+.++|  ++|.+..    .+...+..++.|+.|++..+..
T Consensus        95 ~~~l~-----------------------~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQ-----------------------SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGG-----------------------GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHH-----------------------hCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            21111                       1456776555  4556653    2444566788888888876643