Citrus Sinensis ID: 048688

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
ETANTRTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccEEEEEEcccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHccccccccEEEcccccccEEccHHHHcccccccEEEccccEEEEccccccccccccccEEccccccccccccccccccccccEEccccEEEEcccHHcccccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHccccccccHHcccccccccccccEEEcccccccEEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
etantrtiTTDQDALLALKAHithdptnflaknwntsapvcnwtgvtcdvhsHKVTALnisglnltgtipsqlgnlsslqsldlsfnrlsgsipsaifttytlkdvsfrenqltgvfpsfifnksslqhldfsrntlsgeipanicsslpfldYLYLSKnmlhggipstlsnctYLRILSLAYndfsgavpkdiGNLTKLMGLYLgrnrlqgeiprefgnlAELEQMSLAENNLQALLLYSFMP
Flexible Loop (DISEMBL)
etantrtittdqDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP
Low Complexity Region (SEG)
ETANTRTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPsqlgnlsslqsldlsFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP
Disordered region (IsUnstruct)
***********QDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYS***
Disordered Region (DISOPRED)
****TRTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP
Disordered Region (DISEMBL)
********TTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP
Disordered Region (DISPRO)
*********TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ETANTRTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q9M2Z1	1002	Leucine-rich repeat recep	yes	no	0.901	0.219	0.394	5e-35
C0LGT6	1031	LRR receptor-like serine/	no	no	0.950	0.225	0.360	1e-34
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.922	0.179	0.345	5e-31
Q9FL28	1173	LRR receptor-like serine/	no	no	0.897	0.186	0.364	6e-31
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.913	0.202	0.370	8e-31
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.942	0.227	0.357	9e-31
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.942	0.184	0.341	3e-30
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.897	0.212	0.353	4e-30
Q9SD62	1025	Putative receptor-like pr	no	no	0.959	0.228	0.305	3e-29
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.934	0.206	0.339	5e-29

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  147 bits (372), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 134/223 (60%), Gaps = 3/223 (1%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
           T+  ALL+LK+  T D  + L  +WN S   C+WTGVTCDV    VT+L++SGLNL+GT+
Sbjct: 26  TELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTL 85

Query: 70  PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK-SSLQ 128
            S + +L  LQ+L L+ N++SG IP  I   Y L+ ++   N   G FP  + +   +L+
Sbjct: 86  SSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLR 145

Query: 129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188
            LD   N L+G++P ++ ++L  L +L+L  N   G IP+T      L  L+++ N+ +G
Sbjct: 146 VLDLYNNNLTGDLPVSL-TNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTG 204

Query: 189 AVPKDIGNLTKLMGLYLG-RNRLQGEIPREFGNLAELEQMSLA 230
            +P +IGNLT L  LY+G  N  +  +P E GNL+EL +   A
Sbjct: 205 KIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAA 247

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 124/233 (53%), Gaps = 1/233 (0%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
           TD  ALL  K+ ++ +    +  +WN S+P CNW GVTC     +V +LN+ G  LTG I
Sbjct: 30  TDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVI 89

Query: 70  PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH 129
              +GNLS L+ L+L+ N    +IP  +   + L+ ++   N L G  PS + N S L  
Sbjct: 90  SPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLST 149

Query: 130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA 189
           +D S N L   +P+ +  SL  L  L LSKN L G  P++L N T L+ L  AYN   G 
Sbjct: 150 VDLSSNHLGHGVPSEL-GSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208

Query: 190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
           +P ++  LT+++   +  N   G  P    N++ LE +SLA+N+    L   F
Sbjct: 209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADF 261

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  134 bits (337), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 129/255 (50%), Gaps = 30/255 (11%)

Query: 11  DQDALLALK-AHITHDPTNFLAKNWNTSAP-VCNWTGVTCDVHSHKVTALNISGLNLTGT 68
           D   LL LK + IT+     + ++WN+ +P  CNWTGVTC     ++  LN+SGL LTG+
Sbjct: 29  DLQTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVTCG--GREIIGLNLSGLGLTGS 86

Query: 69  IPSQLGNLSSLQSLDLSFNRL-------------------------SGSIPSAIFTTYTL 103
           I   +G  ++L  +DLS NRL                         SG IPS + +   L
Sbjct: 87  ISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNL 146

Query: 104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163
           K +   +N+L G  P    N  +LQ L  +   L+G IP+     L  L  L L  N L 
Sbjct: 147 KSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRF-GRLVQLQTLILQDNELE 205

Query: 164 GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223
           G IP+ + NCT L + + A+N  +G++P ++  L  L  L LG N   GEIP + G+L  
Sbjct: 206 GPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVS 265

Query: 224 LEQMSLAENNLQALL 238
           ++ ++L  N LQ L+
Sbjct: 266 IQYLNLIGNQLQGLI 280

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 124/228 (54%), Gaps = 9/228 (3%)

Query: 13  DALLALKAHITHDPTNFLAKNWNTSAPV--CNWTGVTCDVHSHKVTALNISGLNLTGTIP 70
           +AL + K  I++DP   L+ +W     +  CNWTG+TCD   H V ++++    L G + 
Sbjct: 32  EALKSFKNGISNDPLGVLS-DWTIIGSLRHCNWTGITCDSTGH-VVSVSLLEKQLEGVLS 89

Query: 71  SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130
             + NL+ LQ LDL+ N  +G IP+ I     L  +    N  +G  PS I+   ++ +L
Sbjct: 90  PAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYL 149

Query: 131 DFSRNTLSGEIPANIC--SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188
           D   N LSG++P  IC  SSL  + + Y   N L G IP  L +  +L++   A N  +G
Sbjct: 150 DLRNNLLSGDVPEEICKTSSLVLIGFDY---NNLTGKIPECLGDLVHLQMFVAAGNHLTG 206

Query: 189 AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236
           ++P  IG L  L  L L  N+L G+IPR+FGNL  L+ + L EN L+ 
Sbjct: 207 SIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEG 254

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 129/254 (50%), Gaps = 31/254 (12%)

Query: 5   TRTITTDQDALLALKAHITHDPTNFLAKNWNT--SAPVCNWTGVTCDVHSHKVTALNISG 62
            R++  +   LL  KA + +D   +LA +WN   S P CNWTG+ C  H   VT+++++G
Sbjct: 21  VRSLNEEGRVLLEFKAFL-NDSNGYLA-SWNQLDSNP-CNWTGIAC-THLRTVTSVDLNG 76

Query: 63  LNLTGT------------------------IPSQLGNLSSLQSLDLSFNRLSGSIPSAIF 98
           +NL+GT                        IP  L    SL+ LDL  NR  G IP  + 
Sbjct: 77  MNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLT 136

Query: 99  TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158
              TLK +   EN L G  P  I N SSLQ L    N L+G IP ++ + L  L  +   
Sbjct: 137 MIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSM-AKLRQLRIIRAG 195

Query: 159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF 218
           +N   G IPS +S C  L++L LA N   G++PK +  L  L  L L +NRL GEIP   
Sbjct: 196 RNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSV 255

Query: 219 GNLAELEQMSLAEN 232
           GN++ LE ++L EN
Sbjct: 256 GNISRLEVLALHEN 269

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  133 bits (335), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 121/232 (52%), Gaps = 2/232 (0%)

Query: 7   TITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLT 66
           T  TD+ ALL  K+ ++ D    L+ +WN S P+CNW GVTC   + +VT L +  L L 
Sbjct: 21  TDETDRQALLQFKSQVSEDKRVVLS-SWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLG 79

Query: 67  GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSS 126
           G I   +GNLS L SLDL  N   G+IP  +     L+ +    N L G  P  ++N S 
Sbjct: 80  GVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSR 139

Query: 127 LQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186
           L +L    N L G +P+ +  SL  L  L L  N + G +P++L N T L  L+L++N+ 
Sbjct: 140 LLNLRLDSNRLGGSVPSEL-GSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNL 198

Query: 187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
            G +P D+  LT++  L L  N   G  P    NL+ L+ + +  N+    L
Sbjct: 199 EGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRL 250

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 134/258 (51%), Gaps = 28/258 (10%)

Query: 8   ITTDQDALLALKAHITHDP-TNFLAKNWNT-SAPVCNWTGVTCD-VHSHKVTALNISGLN 64
           I  D   LL +K  +  +P  +   + WN+ +   C+WTGVTCD     +V ALN++GL 
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLG 82

Query: 65  LTGTI------------------------PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT 100
           LTG+I                        P+ L NL+SL+SL L  N+L+G IPS + + 
Sbjct: 83  LTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSL 142

Query: 101 YTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKN 160
             ++ +   +N+L G  P  + N  +LQ L  +   L+G IP+ +   L  +  L L  N
Sbjct: 143 VNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQL-GRLVRVQSLILQDN 201

Query: 161 MLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGN 220
            L G IP+ L NC+ L + + A N  +G +P ++G L  L  L L  N L GEIP + G 
Sbjct: 202 YLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGE 261

Query: 221 LAELEQMSLAENNLQALL 238
           +++L+ +SL  N LQ L+
Sbjct: 262 MSQLQYLSLMANQLQGLI 279

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 16/235 (6%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPV--------CNWTGVTCDVHSHKVTALNIS 61
           ++Q+ LLA K+ +  DP+N L ++W              C+WTGV CD + + V  L +S
Sbjct: 29  SEQEILLAFKSDL-FDPSNNL-QDWKRPENATTFSELVHCHWTGVHCDANGY-VAKLLLS 85

Query: 62  GLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFI 121
            +NL+G +  Q+ +  SLQ+LDLS N    S+P ++    +LK +    N   G FP  +
Sbjct: 86  NMNLSGNVSDQIQSFPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFGTFPYGL 145

Query: 122 FNKSSLQHLDFSRNTLSGEIPANI--CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRIL 179
              + L H++ S N  SG +P ++   ++L  LD+         G +PS+  N   L+ L
Sbjct: 146 GMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDF---RGGYFEGSVPSSFKNLKNLKFL 202

Query: 180 SLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
            L+ N+F G VPK IG L+ L  + LG N   GEIP EFG L  L+ + LA  NL
Sbjct: 203 GLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNL 257

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 136/285 (47%), Gaps = 51/285 (17%)

Query: 7   TITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLT 66
           T  TD+ ALL  K+ ++ + +  +  +WN S P+C+WTGV C +   +VT +++ GL LT
Sbjct: 36  TEETDKQALLEFKSQVS-ETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLT 94

Query: 67  GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR----------------- 109
           G +   +GNLS L+SL+L+ N   G+IPS +   + L+ ++                   
Sbjct: 95  GVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSS 154

Query: 110 -------------------------------ENQLTGVFPSFIFNKSSLQHLDFSRNTLS 138
                                           N LTG FP+ + N +SLQ LDF  N + 
Sbjct: 155 LSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIE 214

Query: 139 GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGN-L 197
           GEIP +I + L  + +  ++ N  +G  P  + N + L  LS+  N FSG +  D G+ L
Sbjct: 215 GEIPGDI-ARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLL 273

Query: 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
             L  LY+G N   G IP    N++ L Q+ +  N+L   +  SF
Sbjct: 274 PNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSF 318

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  127 bits (320), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 122/256 (47%), Gaps = 28/256 (10%)

Query: 5   TRTITTDQDALLALKAHITHDPTNFLAKNWNTSAPV-CNWTGVTCDVHSH--KVTALNIS 61
           T  +  +   LL +K+       N   +NWN++  V C WTGV C  +S   +V +LN+S
Sbjct: 24  TTGLNLEGQYLLEIKSKFVDAKQNL--RNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLS 81

Query: 62  GLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFI 121
            + L+G +   +G L  L+ LDLS+N LSG IP  I    +L+ +    NQ  G  P  I
Sbjct: 82  SMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEI 141

Query: 122 FNKSSLQHLDFSRNTLSGEIPA----------------NICSSLP-------FLDYLYLS 158
               SL++L    N +SG +P                 NI   LP        L      
Sbjct: 142 GKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAG 201

Query: 159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF 218
           +NM+ G +PS +  C  L +L LA N  SG +PK+IG L KL  + L  N   G IPRE 
Sbjct: 202 QNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREI 261

Query: 219 GNLAELEQMSLAENNL 234
            N   LE ++L +N L
Sbjct: 262 SNCTSLETLALYKNQL 277

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
255578886	1043	serine-threonine protein kinase, plant-t	0.946	0.221	0.439	3e-49
359485176	1160	PREDICTED: probable LRR receptor-like se	0.938	0.197	0.418	1e-48
224139658	1019	predicted protein [Populus trichocarpa]	0.930	0.222	0.428	6e-46
359492792	1067	PREDICTED: probable LRR receptor-like se	0.930	0.212	0.4	4e-45
359485449	1583	PREDICTED: LRR receptor-like serine/thre	0.938	0.144	0.411	7e-45
147852480	1229	hypothetical protein VITISV_039533 [Viti	0.930	0.184	0.4	3e-44
359485451	1454	PREDICTED: LRR receptor-like serine/thre	0.938	0.157	0.435	1e-43
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.913	0.157	0.436	4e-43
356510768	1214	PREDICTED: probable LRR receptor-like se	0.922	0.185	0.411	1e-41
359483677	1229	PREDICTED: LRR receptor-like serine/thre	0.930	0.184	0.389	4e-41

>gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 148/257 (57%), Gaps = 26/257 (10%)

Query: 8   ITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTG 67
           I +DQDALLALK  I  DP N LA NW+ +  VC W GVTC     +VTAL++S + LTG
Sbjct: 31  IASDQDALLALKVRIIRDPNNLLAANWSITTSVCTWVGVTCGARHGRVTALDLSDMGLTG 90

Query: 68  TIPSQLGNLS------------------------SLQSLDLSFNRLSGSIPSAIFTTYTL 103
           TIP  LGNLS                         +++  +S N  SG IPS I +   L
Sbjct: 91  TIPPHLGNLSFLAFISFYNNRFHGSLPDELSKLRRIKAFGMSTNYFSGEIPSWIGSFTQL 150

Query: 104 KDVSFRENQLTGVFPSFIFNK--SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM 161
           + +S   N+ TG+ P+ + N   SSL  LDF  N L+G +P NI + L  L  LYL+ N+
Sbjct: 151 QRLSLSSNKFTGLLPAILANNTISSLWLLDFGTNNLTGRLPPNIFTHLANLRALYLNSNL 210

Query: 162 LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNL 221
            +G IPSTL  C  L++L+L++N F G++ KDIGNLT L  LYLG N   G IP E G+L
Sbjct: 211 FNGPIPSTLMACQQLKLLALSFNHFEGSIHKDIGNLTMLQELYLGGNNFSGTIPDEIGDL 270

Query: 222 AELEQMSLAENNLQALL 238
           A LE++ L  N L  L+
Sbjct: 271 AHLEEIILNVNGLSGLV 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485176|ref|XP_002280075.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/277 (41%), Positives = 155/277 (55%), Gaps = 48/277 (17%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
            D+ +LLA+KAHIT D  + LA NW+T+   CNW GV+CD    +V AL++S ++L GTI
Sbjct: 33  ADELSLLAMKAHITSDSKDVLATNWSTTTSYCNWFGVSCDAARQRVIALDLSNMDLEGTI 92

Query: 70  PSQLGNLSSLQSLDLS------------------------FNRLSGSIPSAIFT------ 99
             Q+GNLS L +LDLS                         NRL+GSIP AI        
Sbjct: 93  APQVGNLSFLVTLDLSNNSFHASIPNEIAKCRELRQLYLFNNRLTGSIPQAIGNLSKLEQ 152

Query: 100 ------------------TYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEI 141
                               +LK +SFR N LT   PS IFN SSLQ++  + N+LSG +
Sbjct: 153 LYLGGNQLTGEIPREISHLLSLKILSFRSNNLTASIPSAIFNISSLQYIGLTYNSLSGTL 212

Query: 142 PANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM 201
           P ++C SLP L  LYLS N L G IP++L  C  L  +SL++N+F G++P+ IG+L+ L 
Sbjct: 213 PMDMCYSLPKLRGLYLSGNQLSGKIPTSLGKCGRLEEISLSFNEFMGSIPRGIGSLSVLE 272

Query: 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
            LYLG N L+GEIP+   NL+ L    L  NNL  +L
Sbjct: 273 VLYLGSNNLEGEIPQTLFNLSSLRNFELGSNNLGGIL 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 108/252 (42%), Positives = 138/252 (54%), Gaps = 25/252 (9%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
           TDQ ALLA K HIT DP N L  +W++    CNW GV+C +   +VTAL++S + L GTI
Sbjct: 30  TDQSALLAFKDHITFDPQNMLTHSWSSKTSFCNWMGVSCSLRRQRVTALDLSSMGLLGTI 89

Query: 70  PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT-------------------------YTLK 104
           P QLGNLS LQ L L  N   G +PS I                            + L+
Sbjct: 90  PPQLGNLSFLQYLILYNNSFHGDLPSEIGNLRRLQVMDIGSNKLSLVIVPESFGNLHRLE 149

Query: 105 DVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG 164
           ++ F  N LTG  PS IFN SSL+ LD   N L G +P N+C  LP L+ L LS N L G
Sbjct: 150 ELRFDGNNLTGTIPSTIFNISSLKVLDLMFNGLFGSLPKNMCDHLPRLEMLLLSSNQLSG 209

Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
            IPS L  C  L++L L YN+F+G +P+++G L  L  L LG N L G++PR   N+  L
Sbjct: 210 QIPSDLFKCRELQLLWLPYNNFTGVIPEELGFLPMLEVLNLGVNMLSGDLPRSIFNMTSL 269

Query: 225 EQMSLAENNLQA 236
             M +  NNL  
Sbjct: 270 RTMQICCNNLSG 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492792|ref|XP_002278117.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/275 (40%), Positives = 139/275 (50%), Gaps = 48/275 (17%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
           TDQ+ALLA K+ IT    + L  NW T A  C W GV+C  H  +VTALN+S +   GTI
Sbjct: 35  TDQEALLAFKSQITFKSDDPLVSNWTTEASFCTWVGVSCSSHRQRVTALNLSFMGFQGTI 94

Query: 70  PSQLGNLSSLQSLDLS-------------------------------------------- 85
              +GNLS L  LDLS                                            
Sbjct: 95  SPCIGNLSFLTVLDLSNNSIHGQLPETVGHLRRLRVINLRSNNLEGKIPSSLSQCRRLQW 154

Query: 86  ----FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEI 141
                NR  G+IP  I     L+++   EN LTG  PS IFN S+L+++D   N LSG I
Sbjct: 155 LLLRSNRFQGNIPKEIAHLSHLEELDLSENYLTGTIPSTIFNMSTLKYIDLVVNNLSGGI 214

Query: 142 PANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM 201
           P  IC  LP L+ LYLS N L G  P++L NCT +R +S   N F G++P DIG L+KL 
Sbjct: 215 PTTICHKLPDLEVLYLSVNPLGGPFPASLCNCTSIRSISFNRNGFIGSIPADIGCLSKLE 274

Query: 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236
           GL L  NRL G IP   GNL+ + ++ +A NNL  
Sbjct: 275 GLGLAMNRLTGTIPLSLGNLSRMRRLRIAYNNLSG 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485449|ref|XP_002276919.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 151/277 (54%), Gaps = 48/277 (17%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
           +D+ ALLALKAHIT+D    LA NW+++   CNW GV+C+ H  ++TALN+S + L GTI
Sbjct: 216 SDEYALLALKAHITYDSQGILATNWSSTTSYCNWFGVSCNAHHGRLTALNLSNMGLEGTI 275

Query: 70  PSQLGNLSSLQSLDLS-------------------------------------------- 85
           P Q+ NLS L SLDLS                                            
Sbjct: 276 PPQVSNLSFLASLDLSDNYFHASLPNEIGNCRQLRQLYFFNNELTGSIPQSLGNLSKLEE 335

Query: 86  ----FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEI 141
                N L+G IP  +    +LK +S   N LTG  PS IFN SSLQ +  S N L G +
Sbjct: 336 SYLDSNHLTGDIPEEMSNLLSLKILSLFVNNLTGSIPSGIFNISSLQSISLSANDLYGNL 395

Query: 142 PANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM 201
           P ++C  +P L+ LYLS N L G IP++L NC  L+++SL+YN+F G++PK IGNL++L 
Sbjct: 396 PMDMCDRIPNLNGLYLSYNQLSGQIPTSLHNCAKLQLISLSYNEFIGSIPKGIGNLSELE 455

Query: 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
            LYLG+  L GEIP    N++ L    L  NNL   L
Sbjct: 456 VLYLGQKHLTGEIPEALFNISSLRIFDLPSNNLSGTL 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera]

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/275 (40%), Positives = 149/275 (54%), Gaps = 48/275 (17%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
            D+ AL+ALKAHIT+D    LA NW+T +  CNW G++C+    +V+A+N+S + L GTI
Sbjct: 8   VDEFALIALKAHITYDSQGILATNWSTKSSYCNWYGISCNAPQQRVSAINLSNMGLEGTI 67

Query: 70  PSQLGNLSSLQSLDLS------------------------FNRLSGSIPSAIFTTYTLKD 105
             Q+GNLS L SLDLS                         N+L G IP AI     L++
Sbjct: 68  APQVGNLSFLISLDLSNNYFHDSLPKDIGKCKELQQLNLFNNKLVGGIPEAICNLSKLEE 127

Query: 106 ------------------------VSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEI 141
                                   +SF  N LTG  P+ IFN SSL ++  S N LSG +
Sbjct: 128 LYLGNNQLIGEIPKKMNHLQNLKVLSFPMNNLTGFIPATIFNISSLLNISLSNNNLSGSL 187

Query: 142 PANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM 201
           P ++C + P L  L LS N L G IP+ L  C  L+++SLAYNDF+G++P  IGNL +L 
Sbjct: 188 PMDMCYANPKLKELNLSSNHLSGKIPTGLGQCLKLQVISLAYNDFTGSIPSGIGNLVELQ 247

Query: 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236
            L L  N L GEIP+   N++ L  ++LA NNL+ 
Sbjct: 248 RLSLQNNSLTGEIPQLLFNISSLRLLNLAVNNLEG 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/232 (43%), Positives = 144/232 (62%), Gaps = 3/232 (1%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
            D+ AL+ALKAHIT+D    LA NW+T +  C+W G++C+    +V+A+N+S + L GTI
Sbjct: 8   VDEVALIALKAHITYDSQGILATNWSTKSSYCSWYGISCNAPQQRVSAINLSNMGLQGTI 67

Query: 70  PSQLGNLSSLQSLDLSFNRLSGSIP---SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSS 126
            SQ+GNLS L SLDLS N    S+P    AI     L+++    NQLTG  P    +  +
Sbjct: 68  VSQVGNLSFLVSLDLSNNYFHASLPKDIEAICNLSKLEELYLGNNQLTGEIPKTFSHLRN 127

Query: 127 LQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186
           L+ L    N L+G IPA I ++ P L  L L+ N L G IP++L  CT L+++SL+YN+ 
Sbjct: 128 LKILSLRMNNLTGSIPATIFNTNPNLKELNLTSNNLSGKIPTSLGQCTKLQVISLSYNEL 187

Query: 187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
           +G++P+ IGNL +L  L L  N L GEIP+   N++ L  + L ENNL  +L
Sbjct: 188 TGSMPRAIGNLVELQRLSLLNNSLTGEIPQSLLNISSLRFLRLGENNLVGIL 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 6/229 (2%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
            D+ AL+ALKAHIT+D    LA NW+T +  C+W G++C+    +V+A+N+S + L GTI
Sbjct: 8   VDEVALIALKAHITYDSQGILATNWSTKSSYCSWYGISCNAPQQRVSAINLSNMGLQGTI 67

Query: 70  PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH 129
             Q+GNLS L SLDLS N    S+P  I     L  V F      G  P+ IFN SSL  
Sbjct: 68  VPQVGNLSFLVSLDLSNNYFHASLPKDI-XKILLXFVYF-----IGSIPATIFNISSLLK 121

Query: 130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA 189
           +  S N+LSG +P ++C++ P L  L L+ N L G  P+ L  CT L+ +SL+YN+F+G+
Sbjct: 122 ISLSYNSLSGSLPMDMCNTNPKLKELNLTSNHLSGKXPTGLGQCTKLQGISLSYNEFTGS 181

Query: 190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
           +P+ IGNL +L  L L  N L GEIP+    ++ L  + L ENNL  +L
Sbjct: 182 IPRAIGNLVELQSLSLXNNSLTGEIPQSLFKISSLRFLRLGENNLVGIL 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510768|ref|XP_003524106.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 133/226 (58%), Gaps = 1/226 (0%)

Query: 9   TTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGT 68
           TTD+ ALLALK+ IT DP NFL  NW+ +  VCNW GVTCD +  +V  LN+  ++L+G 
Sbjct: 32  TTDKLALLALKSSITRDPHNFLTHNWSATTSVCNWVGVTCDAYHGRVRTLNLGDMSLSGI 91

Query: 69  IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQ 128
           +PS LGNL+ L  LDL  N+  G +P  +   + LK ++   N+ +G    +I   S+L+
Sbjct: 92  MPSHLGNLTFLNKLDLGGNKFHGQLPEELVQLHRLKFLNLSYNEFSGNVSEWIGGLSTLR 151

Query: 129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188
           +L+   N   G IP +I S+L  L+ +    N + G IP  +   T LR+LS+  N  SG
Sbjct: 152 YLNLGNNDFGGFIPKSI-SNLTMLEIMDWGNNFIQGTIPPEVGKMTQLRVLSMYSNRLSG 210

Query: 189 AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
            +P+ + NL+ L G+ L  N L G IP E G L +LE M L +N L
Sbjct: 211 TIPRTVSNLSSLEGISLSYNSLSGGIPSEIGELPQLEIMYLGDNPL 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/275 (38%), Positives = 145/275 (52%), Gaps = 48/275 (17%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
            D+ AL+ALK HIT+D    LA NW+T  P  +W G++C+     V+A+N+S + L GTI
Sbjct: 8   VDEFALIALKTHITYDSQGILATNWSTKRPHYSWIGISCNAPQLSVSAINLSNMGLEGTI 67

Query: 70  PSQLGNLSSLQSLDLS------------------------FNRLSGSIPSAIFTTYTLKD 105
             Q+GNLS L SLDLS                         N+L G IP AI     L++
Sbjct: 68  APQVGNLSFLVSLDLSNNHFHGSLPKDIGKCKELQQLNLFNNKLVGGIPEAICNLSKLEE 127

Query: 106 ------------------------VSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEI 141
                                   +SF  N LTG  P+ IFN SSL ++  S N LSG +
Sbjct: 128 LYLGNNQLIGEIPKKMNHLQNLKVLSFPMNNLTGSIPATIFNISSLLNISLSNNNLSGSL 187

Query: 142 PANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM 201
           P ++C + P L  L LS N L G IP+ L  C  L+++SLAYNDF+G++P  IGNL +L 
Sbjct: 188 PMDMCYANPKLKKLNLSSNHLSGKIPTGLGQCIQLQVISLAYNDFTGSIPSGIGNLVELQ 247

Query: 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236
            L L  N   GEIP+   N++ L  ++LA NNL+ 
Sbjct: 248 RLSLQNNSFTGEIPQLLFNISSLRFLNLAVNNLEG 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.918	0.223	0.365	8.8e-33
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.922	0.198	0.355	9.3e-31
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.950	0.225	0.330	9.2e-30
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.930	0.221	0.363	1.9e-29
TAIR|locus:2033000	702	AT1G25320 [Arabidopsis thalian	0.885	0.307	0.384	3.7e-29
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.864	0.223	0.373	9.2e-29
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.959	0.228	0.317	9.8e-28
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.860	0.209	0.353	1.5e-27
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.942	0.384	0.322	2e-27
TAIR|locus:2032553	996	HSL1 "HAESA-like 1" [Arabidops	0.909	0.222	0.325	4.1e-27

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 8.8e-33, P = 8.8e-33
 Identities = 83/227 (36%), Positives = 125/227 (55%)

Query:    10 TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
             T+  ALL+LK+  T D  + L  +WN S   C+WTGVTCDV    VT+L++SGLNL+GT+
Sbjct:    26 TELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTL 85

Query:    70 PXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKS-SLQ 128
                              N++SG IP  I   Y L+ ++   N   G FP  + +   +L+
Sbjct:    86 SSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLR 145

Query:   129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188
              LD   N L+G++P ++ ++L  L +L+L  N   G IP+T      L  L+++ N+ +G
Sbjct:   146 VLDLYNNNLTGDLPVSL-TNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTG 204

Query:   189 AVPKDIGNLTKLMGLYLGR-NRLQGEIPREFGNLAELEQMSLAENNL 234
              +P +IGNLT L  LY+G  N  +  +P E GNL+EL +   A   L
Sbjct:   205 KIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGL 251

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 9.3e-31, P = 9.3e-31
 Identities = 84/236 (35%), Positives = 125/236 (52%)

Query:    13 DALLALKAHITHDPTNFLAKNWNTSAPV--CNWTGVTCDVHSHKVTALNISGLNLTGTIP 70
             DAL A K ++ HDP   L  +W+ S P   C+W GV C   +H+VT + +  L L+G I 
Sbjct:    30 DALTAFKLNL-HDPLGALT-SWDPSTPAAPCDWRGVGCT--NHRVTEIRLPRLQLSGRIS 85

Query:    71 XXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130
                             N  +G+IP+++     L  V  + N L+G  P  + N +SL+  
Sbjct:    86 DRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVF 145

Query:   131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV 190
             + + N LSGEIP  + SSL FLD   +S N   G IPS L+N T L++L+L+YN  +G +
Sbjct:   146 NVAGNRLSGEIPVGLPSSLQFLD---ISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEI 202

Query:   191 PKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL--LYSFMP 244
             P  +GNL  L  L+L  N LQG +P    N + L  +S +EN +  ++   Y  +P
Sbjct:   203 PASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALP 258

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 9.2e-30, P = 9.2e-30
 Identities = 77/233 (33%), Positives = 113/233 (48%)

Query:    10 TDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTI 69
             TD  ALL  K+ ++ +    +  +WN S+P CNW GVTC     +V +LN+ G  LTG I
Sbjct:    30 TDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVI 89

Query:    70 PXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH 129
                              N    +IP  +   + L+ ++   N L G  PS + N S L  
Sbjct:    90 SPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLST 149

Query:   130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA 189
             +D S N L   +P+ +  SL  L  L LSKN L G  P++L N T L+ L  AYN   G 
Sbjct:   150 VDLSSNHLGHGVPSEL-GSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208

Query:   190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
             +P ++  LT+++   +  N   G  P    N++ LE +SLA+N+    L   F
Sbjct:   209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADF 261

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 338 (124.0 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 85/234 (36%), Positives = 115/234 (49%)

Query:    11 DQDALLALKAHITHDPTNFLAKNWNTSA--PVCNWTGVTCDV----HSHKVTALNISGLN 64
             D+ ALL+ K+ + +     LA +WNTS     C W GV C      H H+V  L +   N
Sbjct:    32 DELALLSFKSSLLYQGGQSLA-SWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSN 90

Query:    65 LTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK 124
             L+G I                 N LSG IP  +     L+ +   +N + G  P+ I   
Sbjct:    91 LSGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGAC 150

Query:   125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
             + L  LD S N L G IP  I +SL  L  LYL KN L G IPS L N T L+   L++N
Sbjct:   151 TKLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFN 210

Query:   185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
               SGA+P  +G L+ L+ + LG+N L G IP    NL+ L   S+ EN L  ++
Sbjct:   211 RLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMI 264

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2033000 AT1G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 3.7e-29, P = 3.7e-29
 Identities = 87/226 (38%), Positives = 119/226 (52%)

Query:    14 ALLALKAHITHDPTNFLAKNWNT-SAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPXX 72
             ALL LK  I+ DP   L+ NWN+ +   C+W GVTCD  +  V +L+I    L G +P  
Sbjct:    29 ALLTLKQSISKDPDGSLS-NWNSENQNPCSWNGVTCD-DNKVVVSLSIPKKKLLGYLPSS 86

Query:    73 XXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132
                           N LSG++P  +F    L+ +    N L+G  P+ I +   LQ LD 
Sbjct:    87 LGLLSNLRHLNLRSNELSGNLPVELFKAQGLQSLVLYGNFLSGSIPNEIGDLKFLQILDL 146

Query:   133 SRNTLSGEIPANI--CSSLPFLDYLYLSKNMLHGGIPSTLS-NCTYLRILSLAYNDFSGA 189
             SRN+L+G IP ++  C+ L   D   LS+N L G +PS    +   L+ L L+ N+  G 
Sbjct:   147 SRNSLNGSIPESVLKCNRLRSFD---LSQNNLTGSVPSGFGQSLASLQKLDLSSNNLIGL 203

Query:   190 VPKDIGNLTKLMG-LYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
             VP D+GNLT+L G L L  N   G IP   GNL E   ++LA NNL
Sbjct:   204 VPDDLGNLTRLQGTLDLSHNSFSGSIPASLGNLPEKVYVNLAYNNL 249

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 9.2e-29, P = 9.2e-29
 Identities = 81/217 (37%), Positives = 108/217 (49%)

Query:    20 AHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPXXXXXXXXX 79
             + ++  PT    ++W  ++  CNW G+TCD  S +V  L++S   L G+           
Sbjct:    69 SRVSPHPTT---ESWRNNSDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQ 125

Query:    80 XXXXXXF--NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTL 137
                      N L G IPS+I     L  +    NQ  G+ PS I N S L  L  S N  
Sbjct:   126 NLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQF 185

Query:   138 SGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNL 197
             SG+IP++I  +L  L  L LS N   G IPS++ N + L  LSL  NDF G +P  IGNL
Sbjct:   186 SGQIPSSI-GNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNL 244

Query:   198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
              +L  LYL  N   GEIP  FGNL +L  + +  N L
Sbjct:   245 ARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKL 281

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 9.8e-28, P = 9.8e-28
 Identities = 75/236 (31%), Positives = 114/236 (48%)

Query:     7 TITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLT 66
             T  TD+ ALL  K+ ++ + +  +  +WN S P+C+WTGV C +   +VT +++ GL LT
Sbjct:    36 TEETDKQALLEFKSQVS-ETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLT 94

Query:    67 GTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSS 126
             G +                 N   G+IPS +   + L+ ++   N   GV P  + N SS
Sbjct:    95 GVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSS 154

Query:   127 LQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186
             L  LD S N L   +P     SL  L  L L +N L G  P++L N T L++L   YN  
Sbjct:   155 LSTLDLSSNHLEQGVPLEF-GSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQI 213

Query:   187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
              G +P DI  L +++   +  N+  G  P    NL+ L  +S+  N+    L   F
Sbjct:   214 EGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDF 269

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 76/215 (35%), Positives = 114/215 (53%)

Query:    14 ALLALKAHITH--DPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPX 71
             ALL+LK  +T   D  N    +W  S   C W GVTCDV    VT+L++SGLNL+GT+  
Sbjct:    28 ALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSP 87

Query:    72 XXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKS-SLQHL 130
                            N +SG IP  I +   L+ ++   N   G FP  I +   +L+ L
Sbjct:    88 DVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVL 147

Query:   131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV 190
             D   N L+G++P ++ ++L  L +L+L  N   G IP +  +   +  L+++ N+  G +
Sbjct:   148 DVYNNNLTGDLPVSV-TNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKI 206

Query:   191 PKDIGNLTKLMGLYLGR-NRLQGEIPREFGNLAEL 224
             P +IGNLT L  LY+G  N  +  +P E GNL+EL
Sbjct:   207 PPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSEL 241

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 76/236 (32%), Positives = 118/236 (50%)

Query:     8 ITTDQDALLALKAHITHDPTNFLAKNWNTSAPV---CNWTGVTCDVHSHKVTALNISGLN 64
             + +D   LL+L+ H+   P   L   W T+A     CNW G+ CD  S KVT+LN +G  
Sbjct:    27 LNSDGLTLLSLRKHLDKVPPE-LTSTWKTNASEATPCNWFGIICD-DSKKVTSLNFTGSG 84

Query:    65 LTGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK 124
             ++G +                 N  SG IPS++    +L  +   EN  +G  P  + + 
Sbjct:    85 VSGQLGPEIGQLKSLEILDMSSNNFSGIIPSSLGNCSSLVYIDLSENSFSGKVPDTLGSL 144

Query:   125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
              SL  L    N+L+GE+P ++   +P L+YL++  N L G IP  +     L  L L  N
Sbjct:   145 KSLADLYLYSNSLTGELPKSLFR-IPVLNYLHVEHNNLTGLIPQNVGEAKELLHLRLFDN 203

Query:   185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY 240
              F+G +P+ IGN +KL  LYL +N+L G +P     L  L  + +A N+L+  + +
Sbjct:   204 QFTGTIPESIGNCSKLEILYLHKNKLVGSLPASLNLLESLTDLFVANNSLRGTVQF 259

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 4.1e-27, P = 4.1e-27
 Identities = 74/227 (32%), Positives = 122/227 (53%)

Query:    11 DQDALLALKAHIT-HDPTNFLAKNWNTS-APVCNWTGVTCDVHSHKVTALNISGLNLTGT 68
             +QD  +  +  ++  DP ++L+ +WN++ A  C W+GV+C      VT++++S  NL G 
Sbjct:    17 NQDGFILQQVKLSLDDPDSYLS-SWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGP 75

Query:    69 IPXXXXXXXXXXXXXXXFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQ 128
              P                N ++ ++P  I    +L+ +   +N LTG  P  + +  +L 
Sbjct:    76 FPSVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLADIPTLV 135

Query:   129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188
             HLD + N  SG+IPA+       L+ L L  N+L G IP  L N + L++L+L+YN FS 
Sbjct:   136 HLDLTGNNFSGDIPASF-GKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSP 194

Query:   189 A-VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
             + +P + GNLT L  ++L    L G+IP   G L++L  + LA N+L
Sbjct:   195 SRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDL 241

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018948001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (1059 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  164 bits (416), Expect = 3e-46
 Identities = 99/224 (44%), Positives = 139/224 (62%), Gaps = 13/224 (5%)

Query: 15  LLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLG 74
           LL+ K+ I +DP  +L+ NWN+SA VC W G+TC+ +S +V ++++SG N++G I S + 
Sbjct: 34  LLSFKSSI-NDPLKYLS-NWNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIF 90

Query: 75  NLSSLQSLDLSFNRLSGSIPSAIFTT-YTLKDVSFRENQLTGVFPS-FIFNKSSLQHLDF 132
            L  +Q+++LS N+LSG IP  IFTT  +L+ ++   N  TG  P   I N   L+ LD 
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDL 147

Query: 133 SRNTLSGEIPANI--CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV 190
           S N LSGEIP +I   SSL  LD   L  N+L G IP++L+N T L  L+LA N   G +
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLD---LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 191 PKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           P+++G +  L  +YLG N L GEIP E G L  L  + L  NNL
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  117 bits (294), Expect = 6e-30
 Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 1/172 (0%)

Query: 64  NLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFN 123
           NL+G IP ++G L+SL  LDL +N L+G IPS++     L+ +   +N+L+G  P  IF+
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 124 KSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY 183
              L  LD S N+LSGEIP  +   L  L+ L+L  N   G IP  L++   L++L L  
Sbjct: 283 LQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 184 NDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           N FSG +PK++G    L  L L  N L GEIP    +   L ++ L  N+L+
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  115 bits (290), Expect = 2e-29
 Identities = 69/183 (37%), Positives = 95/183 (51%), Gaps = 7/183 (3%)

Query: 64  NLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFN 123
           NLTG IPS LGNL +LQ L L  N+LSG IP +IF+   L  +   +N L+G  P  +  
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 124 KSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY 183
             +L+ L    N  +G+IP  + S LP L  L L  N   G IP  L     L +L L+ 
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 184 NDFSGAVPK---DIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY 240
           N+ +G +P+     GNL KL+   L  N L+GEIP+  G    L ++ L +N+    L  
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLI---LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Query: 241 SFM 243
            F 
Sbjct: 423 EFT 425

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (264), Expect = 5e-26
 Identities = 64/177 (36%), Positives = 95/177 (53%), Gaps = 1/177 (0%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L++ G  L G IP+ L NL+SL+ L L+ N+L G IP  +    +LK +    N L+G  
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR 177
           P  I   +SL HLD   N L+G IP+++  +L  L YL+L +N L G IP ++ +   L 
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 178 ILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
            L L+ N  SG +P+ +  L  L  L+L  N   G+IP    +L  L+ + L  N  
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  100 bits (251), Expect = 3e-24
 Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 2/175 (1%)

Query: 64  NLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFN 123
           + +G +PS+   L  +  LD+S N L G I S  +   +L+ +S   N+  G  P   F 
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FG 473

Query: 124 KSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY 183
              L++LD SRN  SG +P  +  SL  L  L LS+N L G IP  LS+C  L  L L++
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKL-GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 184 NDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
           N  SG +P     +  L  L L +N+L GEIP+  GN+  L Q++++ N+L   L
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =   99 bits (249), Expect = 5e-24
 Identities = 70/192 (36%), Positives = 100/192 (52%), Gaps = 4/192 (2%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
           +T L++S  NLTG IP  L +  +L  L L  N L G IP ++    +L+ V  ++N  +
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
           G  PS       +  LD S N L G I +     +P L  L L++N   GG+P       
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPD-SFGSK 475

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
            L  L L+ N FSGAVP+ +G+L++LM L L  N+L GEIP E  +  +L  + L+ N L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 235 QALLLYSF--MP 244
              +  SF  MP
Sbjct: 536 SGQIPASFSEMP 547

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 99.5 bits (248), Expect = 8e-24
 Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 2/161 (1%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
           V  L+IS  NL G I S+  ++ SLQ L L+ N+  G +P + F +  L+++    NQ +
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFS 488

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
           G  P  + + S L  L  S N LSGEIP  + SS   L  L LS N L G IP++ S   
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP 215
            L  L L+ N  SG +PK++GN+  L+ + +  N L G +P
Sbjct: 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 3e-22
 Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 1/189 (0%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           K+ +L++S  +L+G IP  +  L +L+ L L  N  +G IP A+ +   L+ +    N+ 
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           +G  P  +   ++L  LD S N L+GEIP  +CSS   L  L L  N L G IP +L  C
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGAC 403

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
             LR + L  N FSG +P +   L  +  L +  N LQG I     ++  L+ +SLA N 
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 234 LQALLLYSF 242
               L  SF
Sbjct: 464 FFGGLPDSF 472

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.7 bits (194), Expect = 9e-17
 Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 52  SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111
           S ++  L++S    +G +P +LG+LS L  L LS N+LSG IP  + +   L  +    N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 112 QLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
           QL+G  P+       L  LD S+N LSGEIP N+  ++  L  + +S N LHG +PST
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL-GNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 5e-14
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA 189
           L      L G IP +I S L  L  + LS N + G IP +L + T L +L L+YN F+G+
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFG 219
           +P+ +G LT L  L L  N L G +P   G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 5e-12
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 24/91 (26%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ 112
             + ++N+SG ++ G IP  LG+++SL+ LDLS+N  +GSIP ++              Q
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-------------GQ 488

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPA 143
           LT           SL+ L+ + N+LSG +PA
Sbjct: 489 LT-----------SLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 55.4 bits (134), Expect = 8e-11
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 10 TDQDALLALKAHITHDPTNFLAKNWNTSAPV-CNWTGVTCD 49
           D+DALLA K+ +  DP+  L+ +WN S+   C+WTGVTCD
Sbjct: 3  DDRDALLAFKSSLNGDPSGALS-SWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 29/132 (21%)

Query: 43  WTGVTCDVHSHK----VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIF 98
           W+G  C   S K    +  L +    L G IP+ +  L  LQS++LS N + G+IP ++ 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 99  TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158
           +                         +SL+ LD S N+ +G IP ++   L  L  L L+
Sbjct: 464 SI------------------------TSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLN 498

Query: 159 KNMLHGGIPSTL 170
            N L G +P+ L
Sbjct: 499 GNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 29/84 (34%), Positives = 44/84 (52%)

Query: 151 FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL 210
           F+D L L    L G IP+ +S   +L+ ++L+ N   G +P  +G++T L  L L  N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 211 QGEIPREFGNLAELEQMSLAENNL 234
            G IP   G L  L  ++L  N+L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND 185
           +L+ LD S N L+  IP      LP L  L LS N L    P   S    LR L L+ N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 186 F 186
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 179 LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
           L L      G +P DI  L  L  + L  N ++G IP   G++  LE + L+ N+    +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 6/200 (3%)

Query: 35  NTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP 94
             S    +    + ++ +          LN   +  S+L  L++L SLDL  N ++   P
Sbjct: 74  LLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP 133

Query: 95  SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDY 154
                   LK++   +N++    PS + N  +L++LD S N LS ++P  + S+L  L+ 
Sbjct: 134 LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL-SNLSNLNN 190

Query: 155 LYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI 214
           L LS N +   +P  +   + L  L L+ N     +   + NL  L GL L  N+L+ ++
Sbjct: 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247

Query: 215 PREFGNLAELEQMSLAENNL 234
           P   GNL+ LE + L+ N +
Sbjct: 248 PESIGNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 8/186 (4%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +  L++S   +  ++PS L NL +L++LDLSFN LS  +P  +     L ++    N++
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           +   P  I   S+L+ LD S N++   + +   S+L  L  L LS N L   +P ++ N 
Sbjct: 199 S-DLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKL-EDLPESIGNL 254

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           + L  L L+ N  S      +G+LT L  L L  N L   +P     L  LE +      
Sbjct: 255 SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Query: 234 LQALLL 239
           L+AL L
Sbjct: 313 LKALEL 318

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.8
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.72
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.69
PLN03150	623	hypothetical protein; Provisional	99.64
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.58
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.56
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.54
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.53
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.46
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.41
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
PLN03150	623	hypothetical protein; Provisional	99.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.82
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.58
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.51
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.43
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
PRK15386	426	type III secretion protein GogB; Provisional	98.01
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.79
PRK15386	426	type III secretion protein GogB; Provisional	97.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.76
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.02
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.28
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.49
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.69
smart00370	26	LRR Leucine-rich repeats, outliers.	94.69
smart00370	26	LRR Leucine-rich repeats, outliers.	94.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.0
KOG4308	478	consensus LRR-containing protein [Function unknown	93.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.32
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.95
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.26
KOG4308	478	consensus LRR-containing protein [Function unknown	89.01
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.86
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.31
KOG4341	483	consensus F-box protein containing LRR [General fu	86.64
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.19
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.63
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.32

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.6e-29  Score=233.01  Aligned_cols=226  Identities=41%  Similarity=0.724  Sum_probs=144.9

Q ss_pred             chhHHHHHHHHHHhcccCCcchhcCCCCCCCCCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCC
Q 048688            8 ITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFN   87 (244)
Q Consensus         8 ~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n   87 (244)
                      ...|+.+|++||+.+. ++...+.. |....++|.|.|+.|.. ..+|+.|+++++.+.+.++..|..+++|++|++++|
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence            4578999999999994 56666666 98888999999999975 568999999999998888889999999999999999


Q ss_pred             CCCCCCCcccc-CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccC
Q 048688           88 RLSGSIPSAIF-TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI  166 (244)
Q Consensus        88 ~i~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~  166 (244)
                      .+.+.+|..+. .+.+|++|++++|.+.+..|.  ..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.+
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~  180 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKI  180 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccC
Confidence            98877777654 677777777777766654443  234555555555555544444444 44555555555555544444


Q ss_pred             CccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccC
Q 048688          167 PSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLL  239 (244)
Q Consensus       167 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  239 (244)
                      |..++++++|++|++++|.+.+.+|..+..+.+|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence            4444445555555555544444444444444444444444444444444444444444444444444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=5.9e-24  Score=196.17  Aligned_cols=188  Identities=38%  Similarity=0.510  Sum_probs=116.6

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      .+++++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            45566666666666656666666667777777776666656666666666677777766666666666666666666666


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.+.+.+|..+ ..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+..+.+|+.|++++|.+.
T Consensus       219 L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        219 LGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             CcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            66666665555555 56666666666666665556666666666666666666655555555555555555555555555


Q ss_pred             ccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      +.+|..+..+++|+.|++++|.+.+.+|.
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence            55555555555555555555555554443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-22  Score=144.62  Aligned_cols=180  Identities=32%  Similarity=0.486  Sum_probs=156.1

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..+++.|.+++|.++ .+|+.++.+.+|+.|++.+|++. .+|.++..+++|+.|++..|++. ..|..|+.+|.|+.|+
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            467889999999998 78888999999999999999998 99999999999999999999988 8899999999999999


Q ss_pred             ccCCCCCC-cCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          132 FSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       132 l~~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      +..|++.. .+|.++ -.+..|+.|.+++|.+. .+|..++++++|+.|.++.|.+. .+|..++.+..|++|++++|++
T Consensus       109 ltynnl~e~~lpgnf-f~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNF-FYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             ccccccccccCCcch-hHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            99998864 356555 46888999999999998 88999999999999999999876 6899999999999999999999


Q ss_pred             cccCCccccCCC---CCCEEEccCCccCccc
Q 048688          211 QGEIPREFGNLA---ELEQMSLAENNLQALL  238 (244)
Q Consensus       211 ~~~~~~~l~~l~---~L~~L~l~~n~l~~~~  238 (244)
                      + .+|..++.+.   +=+.+.+.+|+....+
T Consensus       186 ~-vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  186 T-VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             e-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            8 7776666543   2355667777665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.81  E-value=5.8e-21  Score=158.39  Aligned_cols=182  Identities=25%  Similarity=0.265  Sum_probs=108.7

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      .++++|+|++|.|+..-.+.|..+.+|..|.|+.|+++...+.+|.++++|+.|+|..|++.-.-...|.++++|+.|.|
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            45666666666666555666666666666666666666444445555666666666666665333445556666666666


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      ..|.+. .+-.+.|..+.++++|++..|+++..-..++.+++.|+.|++++|.|..+.++.+..+++|+.|+|++|.++.
T Consensus       253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence            666665 5555555666666666666666654334455566666666666666655555566666666666666666654


Q ss_pred             cCCccccCCCCCCEEEccCCccC
Q 048688          213 EIPREFGNLAELEQMSLAENNLQ  235 (244)
Q Consensus       213 ~~~~~l~~l~~L~~L~l~~n~l~  235 (244)
                      ..+..|..+..|+.|++++|.++
T Consensus       332 l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  332 LDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             CChhHHHHHHHhhhhcccccchH
Confidence            44445555555555555555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.80  E-value=1.3e-20  Score=156.28  Aligned_cols=190  Identities=23%  Similarity=0.245  Sum_probs=141.6

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      .++++.|+|.+|.|..+-.+.+..++.|+.|||+.|.|...--.+|..-.++++|+|+.|.|+......|..+.+|..|.
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK  203 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence            45689999999988877778888888888888888888743334555667888888888888877777777888888888


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccc------------------------cCCccccCCCCCcEEeeccCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG------------------------GIPSTLSNCTYLRILSLAYNDFS  187 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~------------------------~~~~~l~~~~~L~~L~l~~n~~~  187 (244)
                      |+.|.++ .+|...|.++++|+.|++..|.+.-                        .-...|..+.++++|+|..|.++
T Consensus       204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~  282 (873)
T KOG4194|consen  204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ  282 (873)
T ss_pred             cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence            8888887 8888777778888888887777641                        11223344555666666666666


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          188 GAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       188 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ..-..++.++..|++|+++.|.+.+.-++.+..+++|+.|+++.|.|+..-+..|
T Consensus       283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence            5555666777778888888888777677777778888888888888887766554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.76  E-value=4.6e-21  Score=136.51  Aligned_cols=161  Identities=34%  Similarity=0.506  Sum_probs=147.5

Q ss_pred             CCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCC
Q 048688           73 LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL  152 (244)
Q Consensus        73 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L  152 (244)
                      +-.+.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|++.-|.+. .+|.++ +.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchh
Confidence            336788999999999998 88888999999999999999999 78889999999999999999997 888887 999999


Q ss_pred             cEEEccccccc-ccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 048688          153 DYLYLSKNMLH-GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAE  231 (244)
Q Consensus       153 ~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  231 (244)
                      +.|++.+|.+. ..+|..|..+..|+.|.+++|.+. .+|..++.+.+|+.|.+..|.+- .+|..++.+..|+.|.+++
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            99999999875 368999999999999999999997 88999999999999999999988 7999999999999999999


Q ss_pred             CccCcccC
Q 048688          232 NNLQALLL  239 (244)
Q Consensus       232 n~l~~~~~  239 (244)
                      |.++-+.|
T Consensus       183 nrl~vlpp  190 (264)
T KOG0617|consen  183 NRLTVLPP  190 (264)
T ss_pred             ceeeecCh
Confidence            99987655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.72  E-value=1.8e-19  Score=151.15  Aligned_cols=177  Identities=29%  Similarity=0.408  Sum_probs=91.7

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccc-cCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAI-FTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      +..++.||+++|.+. +.|..+....++-+|+|++|.|. .+|.++ .++..|-.|+|++|++. .+|..+..+..|++|
T Consensus       102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL  178 (1255)
T ss_pred             cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence            445666666666665 45666666666666666666665 444433 34555555666666555 445555555555555


Q ss_pred             EccCCCCC-------------------------CcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCc
Q 048688          131 DFSRNTLS-------------------------GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND  185 (244)
Q Consensus       131 ~l~~~~~~-------------------------~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  185 (244)
                      .|++|.+.                         ..+|..+ ..+.+|..++++.|.+. .+|+.+.++.+|+.|+|++|.
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence            55555432                         1233333 33444444445444444 444445555555555555555


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccC
Q 048688          186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ  235 (244)
Q Consensus       186 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  235 (244)
                      ++ .+-.....+.+|++|+++.|+++ .+|+++..+++|+.|++.+|+++
T Consensus       257 it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  257 IT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             ee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence            44 22222233444555555555554 45555555555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.72  E-value=3.7e-19  Score=149.26  Aligned_cols=180  Identities=29%  Similarity=0.420  Sum_probs=121.5

Q ss_pred             CCceEEEEeCCCccee-ccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           52 SHKVTALNISGLNLTG-TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      ++.++.++++.|++.. -+|..+-.+..|+.|||++|++. +.|..+..-+++-+|+|++|+|..+-.+.+.++.-|-+|
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL  155 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence            5566667777776652 25667778888888888888887 888888888888888888888874433455677888888


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccc-------------------------cCCccccCCCCCcEEeeccCc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-------------------------GIPSTLSNCTYLRILSLAYND  185 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-------------------------~~~~~l~~~~~L~~L~l~~n~  185 (244)
                      +|+.|.+. .+|+.+ ..+..|++|.+++|.+.-                         .+|..+..+.+|..++++.|.
T Consensus       156 DLS~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             ccccchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            88888886 788877 667777777777775421                         234444445555666666665


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       186 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      +. .+|+.+..+.+|+.|+|++|+++ .+......+.+|++|++++|+++.
T Consensus       234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~  282 (1255)
T KOG0444|consen  234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV  282 (1255)
T ss_pred             CC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc
Confidence            54 55666666666666666666665 444445555666666666666654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.71  E-value=2.3e-18  Score=137.39  Aligned_cols=178  Identities=31%  Similarity=0.539  Sum_probs=118.1

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC--------------
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV--------------  116 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~--------------  116 (244)
                      ++.++..||++.|.++ +.|..+.-+++|.+||+++|.|+ .+|.+++++ .|+.|-+.+|.+..+              
T Consensus       250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK  326 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK  326 (565)
T ss_pred             ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence            5788999999999998 78999999999999999999998 888888887 777777666421100              


Q ss_pred             ----------------------------CCccccCCCC--------------------------CCEEEccCCCCC----
Q 048688          117 ----------------------------FPSFIFNKSS--------------------------LQHLDFSRNTLS----  138 (244)
Q Consensus       117 ----------------------------~~~~~~~l~~--------------------------L~~L~l~~~~~~----  138 (244)
                                                  .|+. ..+-+                          ....++++|++.    
T Consensus       327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~-~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk  405 (565)
T KOG0472|consen  327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDI-YAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPK  405 (565)
T ss_pred             HHHHhhccCCCCCCcccccccCCCCCCcccch-hhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhh
Confidence                                        0000 00001                          222233333222    


Q ss_pred             -------------------CcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcc-------------
Q 048688          139 -------------------GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF-------------  186 (244)
Q Consensus       139 -------------------~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~-------------  186 (244)
                                         +.+|..+ ..+++|..|++++|.+. .+|..++.+..||+|+++.|.|             
T Consensus       406 ~L~~lkelvT~l~lsnn~isfv~~~l-~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~l  483 (565)
T KOG0472|consen  406 RLVELKELVTDLVLSNNKISFVPLEL-SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTL  483 (565)
T ss_pred             hhHHHHHHHHHHHhhcCccccchHHH-Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHH
Confidence                               0112222 33445555555555444 4455555555555555555544             


Q ss_pred             ----------cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccC
Q 048688          187 ----------SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ  235 (244)
Q Consensus       187 ----------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  235 (244)
                                ....+..+..+.+|.+||+.+|.+. .+|..++.|.+|++|+++||+|+
T Consensus       484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                      3333444778889999999999998 88999999999999999999998

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.69  E-value=9.7e-19  Score=139.06  Aligned_cols=192  Identities=22%  Similarity=0.269  Sum_probs=146.6

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecC-CccCCCCCccc---------
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE-NQLTGVFPSFI---------  121 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~---------  121 (244)
                      +...+.|+|..|.|+.+.+++|..+++|+.|+|+.|.|+.+.|.+|..++++-.|.+.+ |+|+..-...|         
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            45678899999999988899999999999999999999989999999999988887776 77764322333         


Q ss_pred             ---------------cCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccccc-----------------------
Q 048688          122 ---------------FNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH-----------------------  163 (244)
Q Consensus       122 ---------------~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~-----------------------  163 (244)
                                     ..++++..|.+..|.+. .++...+..+..++++.++.|.+-                       
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence                           34556666666666665 555544455555555555444410                       


Q ss_pred             --------------------------------------ccCC-ccccCCCCCcEEeeccCcccccCCccccCCCCCCEEE
Q 048688          164 --------------------------------------GGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY  204 (244)
Q Consensus       164 --------------------------------------~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  204 (244)
                                                            ...| ..|..+++|++|+|++|+++++-+.+|.+...+++|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence                                                  0111 1234567899999999999988888999999999999


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCccCcccCCCCCC
Q 048688          205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP  244 (244)
Q Consensus       205 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  244 (244)
                      |..|++...-...|..+..|+.|++.+|+|+++.|..|.|
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~  344 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT  344 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence            9999987555667888999999999999999999987754

>PLN03150 hypothetical protein; Provisional

Probab=99.64  E-value=2.6e-15  Score=131.86  Aligned_cols=154  Identities=27%  Similarity=0.488  Sum_probs=129.1

Q ss_pred             ccCCchhHHHHHHHHHHhcccCCcchhcCCCCCCCCCc-----ceeeeeeCCC----CCceEEEEeCCCcceeccCccCC
Q 048688            4 NTRTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVC-----NWTGVTCDVH----SHKVTALNISGLNLTGTIPSQLG   74 (244)
Q Consensus         4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~g~~~~~~----~~~l~~L~l~~~~~~~~~~~~~~   74 (244)
                      +.++...|..+|.++|..+. .+..  .. |..  +.|     .|.|+.|...    ...++.|+|+++.+.+.+|..+.
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~-~~~~--~~-W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~  439 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLG-LPLR--FG-WNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS  439 (623)
T ss_pred             ccccCchHHHHHHHHHHhcC-Cccc--CC-CCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence            45667789999999999984 3321  24 854  344     6999999531    23589999999999999999999


Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcE
Q 048688           75 NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDY  154 (244)
Q Consensus        75 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~  154 (244)
                      .+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.....++..
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~  519 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS  519 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887433456778


Q ss_pred             EEccccccc
Q 048688          155 LYLSKNMLH  163 (244)
Q Consensus       155 L~l~~~~~~  163 (244)
                      +++.+|...
T Consensus       520 l~~~~N~~l  528 (623)
T PLN03150        520 FNFTDNAGL  528 (623)
T ss_pred             EEecCCccc
Confidence            888887643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.62  E-value=1.6e-18  Score=138.34  Aligned_cols=106  Identities=32%  Similarity=0.532  Sum_probs=54.4

Q ss_pred             CCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCcccc------------------------CCCCCcEE
Q 048688          124 KSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS------------------------NCTYLRIL  179 (244)
Q Consensus       124 l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~------------------------~~~~L~~L  179 (244)
                      |..|++|+...|.+. .+|+.+ +.+.+|..|++..|.+. .+| .|.                        +++++.+|
T Consensus       182 m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL  257 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL  257 (565)
T ss_pred             HHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence            444555555444443 555555 44555555555555444 333 233                        44555555


Q ss_pred             eeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          180 SLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       180 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      ++++|++. ..|+.+.-+.+|..||+++|.++ .+|..++.+ +|+.|-+.||++.+
T Consensus       258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH
Confidence            55555554 44555555555555555555555 445555555 55555555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.58  E-value=2.5e-17  Score=136.53  Aligned_cols=177  Identities=29%  Similarity=0.418  Sum_probs=157.4

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +...+..|++.|.+. .+|+.+..+-.|+.+.++.|.+. .+|.+++.+..|.+|+|+.|.++ ..|..++.++ |+.|.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344566788888887 78888888888999999999998 89999999999999999999998 7888888887 99999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|+++ .+|..+ +...+|.+|+.+.|.+. .+|..++.+.+|+.|.++.|++. .+|+.+..++ |..||++.|+++
T Consensus       150 ~sNNkl~-~lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS  224 (722)
T ss_pred             EecCccc-cCCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee
Confidence            9999998 999999 68899999999999998 88999999999999999999987 6777777554 899999999998


Q ss_pred             ccCCccccCCCCCCEEEccCCccCccc
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~  238 (244)
                       .+|-.|.+|++|++|-|.+|+++...
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCCCCh
Confidence             89999999999999999999998843

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.56  E-value=9.6e-17  Score=127.83  Aligned_cols=186  Identities=23%  Similarity=0.252  Sum_probs=147.2

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCC-CCCCCCCCcccc------------------------CCCCCcE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSF-NRLSGSIPSAIF------------------------TTYTLKD  105 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~------------------------~l~~L~~  105 (244)
                      ..+++++|||++|.|+.+-|++|.+++.|..|-+.+ |+|++.....|.                        .++++..
T Consensus        89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l  168 (498)
T KOG4237|consen   89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL  168 (498)
T ss_pred             chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence            578999999999999999999999999988887765 888743333443                        3556666


Q ss_pred             EEecCCccCCCCCccccCCCCCCEEEccCCCCC-----------------------------------------------
Q 048688          106 VSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLS-----------------------------------------------  138 (244)
Q Consensus       106 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-----------------------------------------------  138 (244)
                      |.+.+|.+..+.-..+..+..++++.+..|.+.                                               
T Consensus       169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~  248 (498)
T KOG4237|consen  169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL  248 (498)
T ss_pred             hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence            667777666333336666777777776665411                                               


Q ss_pred             --------------CcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEE
Q 048688          139 --------------GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY  204 (244)
Q Consensus       139 --------------~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  204 (244)
                                    +..|..-|..+++|+.|++++|.++..-+.+|.....++.|.|..|.+...-...|.++..|++|+
T Consensus       249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~  328 (498)
T KOG4237|consen  249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS  328 (498)
T ss_pred             HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence                          122334456788999999999999988888999999999999999998756667788999999999


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       205 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      |++|+++...|..|..+..|..|++-.|++.+
T Consensus       329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             ecCCeeEEEecccccccceeeeeehccCcccC
Confidence            99999998889999999999999999998754

>PLN03210 Resistant to P

Probab=99.56  E-value=1.1e-13  Score=129.63  Aligned_cols=105  Identities=24%  Similarity=0.283  Sum_probs=63.8

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +.+++.|++.++.+. .++..+..+++|+.++++++.....+| .+..+++|++|++.+|.....+|..+..+++|++|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            345666777766665 456666677777777777654333444 356667777777777654446666666777777777


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKN  160 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~  160 (244)
                      +++|.....+|..+  .+++|++|++++|
T Consensus       688 L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc  714 (1153)
T PLN03210        688 MSRCENLEILPTGI--NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCCCcCccCCcC--CCCCCCEEeCCCC
Confidence            77654333555433  3445555555544

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.54  E-value=2.5e-14  Score=126.89  Aligned_cols=165  Identities=25%  Similarity=0.429  Sum_probs=91.3

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      ..++.|++++|.++ .+|..+.  .+|++|++++|.+. .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            45777788888777 4554443  46777777777766 4554432  35666666666655 3343332  35556666


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCcccc-------------------CCCCCcEEeeccCcccccCCcc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS-------------------NCTYLRILSLAYNDFSGAVPKD  193 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------------------~~~~L~~L~l~~n~~~~~~~~~  193 (244)
                      ++|.+. .+|..+   ..+|+.|++++|.++ .+|..+.                   -.++|+.|++++|.++ .+|..
T Consensus       270 s~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~  343 (754)
T PRK15370        270 FHNKIS-CLPENL---PEELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPAS  343 (754)
T ss_pred             cCCccC-cccccc---CCCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChh
Confidence            655555 455433   134555555555554 2222111                   1135666666666655 24433


Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          194 IGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       194 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      +.  ++|+.|++++|.++ .+|..+  .++|+.|++++|+++.+
T Consensus       344 l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        344 LP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL  382 (754)
T ss_pred             hc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC
Confidence            32  46777777777766 455444  24677777777776653

>PLN03210 Resistant to P

Probab=99.54  E-value=1.9e-13  Score=128.11  Aligned_cols=182  Identities=20%  Similarity=0.236  Sum_probs=127.5

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      .+++.|.+.++.+. .+|..| ...+|++|++.++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++
T Consensus       589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL  664 (1153)
T ss_pred             cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence            45778888887776 567666 5689999999999887 7788888899999999998765445664 778999999999


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccccc--------------------CCc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA--------------------VPK  192 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--------------------~~~  192 (244)
                      .+|.....+|..+ ..+++|+.|++++|.....+|..+ ++++|+.|++++|.....                    +|.
T Consensus       665 ~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        665 SDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             cCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence            9987666888887 889999999999875444566544 455566666555432111                    221


Q ss_pred             cc------------------------------cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          193 DI------------------------------GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       193 ~~------------------------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      .+                              ...++|+.|++++|.....+|..++.+++|+.|++++|..-+.+|.
T Consensus       743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence            10                              0123566666666655556777777788888888877754333443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.54  E-value=3.6e-14  Score=125.90  Aligned_cols=164  Identities=28%  Similarity=0.419  Sum_probs=121.9

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      .+...|+++++.++ .+|..+.  +.|+.|++++|.++ .+|..+.  .+|++|++++|.++ .+|..+  ..+|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence            45788999999888 5676553  57999999999998 6776654  58999999999988 456544  357999999


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCcccc-----------------
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG-----------------  195 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-----------------  195 (244)
                      ++|.+. .+|..+.   .+|+.|++++|.+. .+|..+.  ++|+.|++++|.++. +|..+.                 
T Consensus       249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        249 SINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALP  320 (754)
T ss_pred             cCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCC
Confidence            999998 8988773   57999999999998 5776553  489999999998873 343221                 


Q ss_pred             --CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          196 --NLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       196 --~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                        -.++|+.|++++|.++ .+|..+.  ++|+.|++++|+|+.
T Consensus       321 ~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~  360 (754)
T PRK15370        321 ETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV  360 (754)
T ss_pred             ccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc
Confidence              1134566666666665 3444332  577888888887764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.53  E-value=7.2e-16  Score=125.50  Aligned_cols=185  Identities=20%  Similarity=0.254  Sum_probs=131.9

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCC---CCEEeCCCCCCCC----CCCccccCC-CCCcEEEecCCccCCC----CCc
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSS---LQSLDLSFNRLSG----SIPSAIFTT-YTLKDVSFRENQLTGV----FPS  119 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~n~i~~----~~~~~l~~l-~~L~~L~l~~~~l~~~----~~~  119 (244)
                      .++++.|+++++.+....+..+..+..   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    .+.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            568999999999887555555544444   9999999988863    233345566 8899999999988732    233


Q ss_pred             cccCCCCCCEEEccCCCCCCcC----ChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCcccccCC
Q 048688          120 FIFNKSSLQHLDFSRNTLSGEI----PANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGAVP  191 (244)
Q Consensus       120 ~~~~l~~L~~L~l~~~~~~~~l----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~  191 (244)
                      .+..+.+|++|++++|.+.+..    +..+ ...++|++|++++|.+.+.    +...+..+++|+.|++++|.+++...
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            4556788999999999887422    2223 4456899999999987532    34456678899999999998764222


Q ss_pred             cccc-----CCCCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCccCcc
Q 048688          192 KDIG-----NLTKLMGLYLGRNRLQG----EIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       192 ~~~~-----~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ..+.     ....|++|++.+|.+++    .+...+..+++|+.|++++|.++..
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            2221     24789999999998863    3345566778999999999998753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.51  E-value=6.2e-16  Score=134.61  Aligned_cols=173  Identities=29%  Similarity=0.388  Sum_probs=134.7

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCcccc--------------------------CCCCCcEEE
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIF--------------------------TTYTLKDVS  107 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~--------------------------~l~~L~~L~  107 (244)
                      +++.|+...|.++ .+|+...+++.|++|++..|.+. ..|+.+.                          .++.|+.|+
T Consensus       288 ~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly  365 (1081)
T KOG0618|consen  288 SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY  365 (1081)
T ss_pred             hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence            3444444455554 46666667788888888887776 4444331                          133477788


Q ss_pred             ecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688          108 FRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS  187 (244)
Q Consensus       108 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  187 (244)
                      +.+|.++......+.+++.|+.|+|++|.+. .+|...+..+..|++|++++|.++ .+|..+..+..|++|...+|.+.
T Consensus       366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             HhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            8888888776677888999999999999997 888888788999999999999998 78899999999999999999887


Q ss_pred             ccCCccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEEccCCc
Q 048688          188 GAVPKDIGNLTKLMGLYLGRNRLQGE-IPREFGNLAELEQMSLAENN  233 (244)
Q Consensus       188 ~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~  233 (244)
                       .+| .+..++.|+.+|++.|.++.. ++.. ...++|++||++||.
T Consensus       444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNT  487 (1081)
T ss_pred             -ech-hhhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCc
Confidence             677 778899999999999998753 3333 233899999999996

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.50  E-value=6.6e-14  Score=123.87  Aligned_cols=174  Identities=28%  Similarity=0.359  Sum_probs=102.1

Q ss_pred             CCceEEEEeCCCcceeccCccCCCC-----------------CCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccC
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNL-----------------SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT  114 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l-----------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~  114 (244)
                      +++++.|++++|.++. +|.....+                 ..|+.|++++|.+. .+|.   .+++|+.|++++|.+.
T Consensus       241 p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        241 PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA  315 (788)
T ss_pred             CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCccc
Confidence            5677888888887763 34322111                 23444555555554 3332   2356777777777665


Q ss_pred             CCCCcc---c----------cC----CCCCCEEEccCCCCCCcCChhh----------------hCCCCCCcEEEccccc
Q 048688          115 GVFPSF---I----------FN----KSSLQHLDFSRNTLSGEIPANI----------------CSSLPFLDYLYLSKNM  161 (244)
Q Consensus       115 ~~~~~~---~----------~~----l~~L~~L~l~~~~~~~~l~~~~----------------~~~~~~L~~L~l~~~~  161 (244)
                      +. |..   +          ..    ..+|++|++++|.++ .+|...                .....+|+.|++++|.
T Consensus       316 ~L-p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~  393 (788)
T PRK15387        316 SL-PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR  393 (788)
T ss_pred             cC-CCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCc
Confidence            32 221   1          00    125677777777766 444311                0011245555666555


Q ss_pred             ccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCC
Q 048688          162 LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYS  241 (244)
Q Consensus       162 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  241 (244)
                      +. .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|.++ .+|..+..+++|+.|++++|+|++.+|..
T Consensus       394 Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        394 LT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             cc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            55 33432   245667777777766 34432   245777888888887 78888889999999999999999876653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=6.3e-15  Score=119.97  Aligned_cols=184  Identities=22%  Similarity=0.231  Sum_probs=130.5

Q ss_pred             CCceEEEEeCCCcce------eccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCC---CcEEEecCCccCC----CCC
Q 048688           52 SHKVTALNISGLNLT------GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT---LKDVSFRENQLTG----VFP  118 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~---L~~L~l~~~~l~~----~~~  118 (244)
                      .+.++.++++++.+.      ..++..+..+++|++|++++|.+.+..+..+..+.+   |++|++++|.+.+    ...
T Consensus        50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~  129 (319)
T cd00116          50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA  129 (319)
T ss_pred             CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence            456888888887665      223456677889999999999887555555555555   9999999998763    222


Q ss_pred             ccccCC-CCCCEEEccCCCCCCcCChh---hhCCCCCCcEEEcccccccc----cCCccccCCCCCcEEeeccCccccc-
Q 048688          119 SFIFNK-SSLQHLDFSRNTLSGEIPAN---ICSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLAYNDFSGA-  189 (244)
Q Consensus       119 ~~~~~l-~~L~~L~l~~~~~~~~l~~~---~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~-  189 (244)
                      ..+..+ ++|+.|++.+|.+++.....   .+..+.+|++|++++|.+.+    .++..+...++|+.|++++|.+.+. 
T Consensus       130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  209 (319)
T cd00116         130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG  209 (319)
T ss_pred             HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence            334556 88999999999887332221   22556789999999998863    2333455567999999999987633 


Q ss_pred             ---CCccccCCCCCCEEEccCCcccccCCcccc-----CCCCCCEEEccCCccC
Q 048688          190 ---VPKDIGNLTKLMGLYLGRNRLQGEIPREFG-----NLAELEQMSLAENNLQ  235 (244)
Q Consensus       190 ---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~  235 (244)
                         +...+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++
T Consensus       210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence               233456678899999999998753222222     2478999999999886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.46  E-value=3e-15  Score=130.42  Aligned_cols=178  Identities=31%  Similarity=0.472  Sum_probs=108.2

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..++++++++++.++ .+|+++..+.+|+.+...+|.+. .+|..+....+|+.|.+..|.+. .+|.....+..|++|+
T Consensus       240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            567888888888887 46688888888888888888875 66666666666666666666665 4455555566677777


Q ss_pred             ccCCCCCCcCChhhh-------------------------------------------------CCCCCCcEEEcccccc
Q 048688          132 FSRNTLSGEIPANIC-------------------------------------------------SSLPFLDYLYLSKNML  162 (244)
Q Consensus       132 l~~~~~~~~l~~~~~-------------------------------------------------~~~~~L~~L~l~~~~~  162 (244)
                      |..|.+. .+|...+                                                 .+..+|+.|++++|++
T Consensus       317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            7766664 4443221                                                 2333444455555444


Q ss_pred             cccCC-ccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          163 HGGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       163 ~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      . .+| ..+.++..|++|+|++|.++ .+|..+..+..|++|...+|.+. ..| .+..++.|+.+|++.|.++.+
T Consensus       396 ~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  396 N-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             c-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence            4 223 23444444555555555444 33444444455555555555544 344 456677777888888877665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.41  E-value=3.2e-13  Score=113.25  Aligned_cols=180  Identities=35%  Similarity=0.530  Sum_probs=148.1

Q ss_pred             CceEEEEeCCCcceeccCccCCCCC-CCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLS-SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..++.+++.++.+. .++.....+. +|+.|++++|.+. .++..+..+++|+.|+++.|.+. ..+......+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            46888999999888 5677777774 9999999999997 77777889999999999999998 4555455789999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.+. .+|..+ .....|+++.+++|.+. ..+..+..+.++..+.+.+|.+. ..+..+..+..+++|++++|.++
T Consensus       193 ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         193 LSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             ccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence            9999998 888865 45667999999999644 56677888888999988888876 44667788888999999999998


Q ss_pred             ccCCccccCCCCCCEEEccCCccCcccCCC
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQALLLYS  241 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  241 (244)
                       .++. ++.+.+++.|++++|.+....|..
T Consensus       269 -~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         269 -SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             -cccc-ccccCccCEEeccCccccccchhh
Confidence             4444 888999999999999988776543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.38  E-value=5.1e-12  Score=112.10  Aligned_cols=136  Identities=31%  Similarity=0.395  Sum_probs=73.7

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS  133 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  133 (244)
                      +++.|++.+|.++ .+|..   .++|++|++++|.++ .+|..   .++|+.|++.+|.+. .+|..   ..+|+.|+++
T Consensus       223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls  290 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF  290 (788)
T ss_pred             CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence            4555555555555 23321   345555666555555 33321   245555555555554 22221   2446666666


Q ss_pred             CCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccccc
Q 048688          134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE  213 (244)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  213 (244)
                      +|.++ .+|.    .+++|+.|++++|.+. .+|..   ..+|+.|.+.+|.++ .+|..   ..+|+.|++++|+++ .
T Consensus       291 ~N~Lt-~LP~----~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~  356 (788)
T PRK15387        291 GNQLT-SLPV----LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-S  356 (788)
T ss_pred             CCccc-cccc----cccccceeECCCCccc-cCCCC---cccccccccccCccc-ccccc---ccccceEecCCCccC-C
Confidence            66665 5543    2356777777777776 34432   234556666666665 34431   246788888888877 4


Q ss_pred             CC
Q 048688          214 IP  215 (244)
Q Consensus       214 ~~  215 (244)
                      +|
T Consensus       357 LP  358 (788)
T PRK15387        357 LP  358 (788)
T ss_pred             CC
Confidence            44

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=1.6e-13  Score=114.25  Aligned_cols=170  Identities=29%  Similarity=0.397  Sum_probs=137.3

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS  133 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  133 (244)
                      .|+.+.+.+|.+. .+|+++..+..|++++|+.|.+. .+|..++.+ -|+.|.+++|+++ .+|..+...++|.+|+.+
T Consensus        99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s  174 (722)
T KOG0532|consen   99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS  174 (722)
T ss_pred             HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence            3455667777776 68899999999999999999998 888887766 4889999999988 778888888999999999


Q ss_pred             CCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccccc
Q 048688          134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE  213 (244)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  213 (244)
                      .|.+. .+|..+ +.+.+|+.|.+..|.+. .+|..+..+ .|..|+++.|++. .+|-.|.++..|++|-|.+|+++ .
T Consensus       175 ~nei~-slpsql-~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-S  248 (722)
T KOG0532|consen  175 KNEIQ-SLPSQL-GYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-S  248 (722)
T ss_pred             hhhhh-hchHHh-hhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-C
Confidence            99998 888888 78889999999998887 677777755 5889999999987 78888999999999999999998 5


Q ss_pred             CCcccc---CCCCCCEEEccCCc
Q 048688          214 IPREFG---NLAELEQMSLAENN  233 (244)
Q Consensus       214 ~~~~l~---~l~~L~~L~l~~n~  233 (244)
                      .|..+.   ...-.++|+..-++
T Consensus       249 PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  249 PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ChHHHHhccceeeeeeecchhcc
Confidence            554443   23335677776663

>PLN03150 hypothetical protein; Provisional

Probab=99.26  E-value=1.8e-11  Score=107.91  Aligned_cols=113  Identities=33%  Similarity=0.545  Sum_probs=95.7

Q ss_pred             CCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEc
Q 048688          126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYL  205 (244)
Q Consensus       126 ~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  205 (244)
                      .++.|+|++|.+.+.+|..+ ..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            37788899999888888877 78899999999999998888888899999999999999998888888889999999999


Q ss_pred             cCCcccccCCccccCC-CCCCEEEccCCccCcccC
Q 048688          206 GRNRLQGEIPREFGNL-AELEQMSLAENNLQALLL  239 (244)
Q Consensus       206 ~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~  239 (244)
                      ++|.+++.+|..+... .++..+++.+|+..+-.|
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999988888877653 467788888887666544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=1.5e-11  Score=90.45  Aligned_cols=126  Identities=31%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             CCCCCCEEeCCCCCCCCCCCcccc-CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCc
Q 048688           75 NLSSLQSLDLSFNRLSGSIPSAIF-TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLD  153 (244)
Q Consensus        75 ~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~  153 (244)
                      +...+++|+|.+|.|+ .+. .+. .+.+|+.|++++|.++.. . .+..+++|++|++++|.++ .+...+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            3445677777777776 332 343 466777777777777633 2 3556777777777777776 66554433467777


Q ss_pred             EEEccccccccc-CCccccCCCCCcEEeeccCcccccCC---ccccCCCCCCEEEc
Q 048688          154 YLYLSKNMLHGG-IPSTLSNCTYLRILSLAYNDFSGAVP---KDIGNLTKLMGLYL  205 (244)
Q Consensus       154 ~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l  205 (244)
                      +|++++|.+... .-..+..+++|+.|++.+|+++...-   -.+..+++|+.||-
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            777777777532 11345567777777777777653211   12345667776653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=2.8e-11  Score=101.58  Aligned_cols=175  Identities=32%  Similarity=0.488  Sum_probs=141.2

Q ss_pred             EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCC-CCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688           57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTY-TLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN  135 (244)
Q Consensus        57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  135 (244)
                      .++...+.+. .....+..+..++.+++.+|.+. .++....... +|+.|++++|.+. .+|..+..++.|+.|+++.|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            3555555543 22334445678999999999998 7777777774 9999999999998 55566789999999999999


Q ss_pred             CCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCC
Q 048688          136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP  215 (244)
Q Consensus       136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  215 (244)
                      .+. .++... +..+.|+.|++++|.+. .+|........|+.+.+++|.+. ..+..+..+.++..+.+.+|++. ..+
T Consensus       174 ~l~-~l~~~~-~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         174 DLS-DLPKLL-SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhh-hhhhhh-hhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence            998 888765 47889999999999998 67776667777999999999644 45667788889999999999987 447


Q ss_pred             ccccCCCCCCEEEccCCccCcccC
Q 048688          216 REFGNLAELEQMSLAENNLQALLL  239 (244)
Q Consensus       216 ~~l~~l~~L~~L~l~~n~l~~~~~  239 (244)
                      ..+..++.++.|++++|+++.+.+
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             chhccccccceecccccccccccc
Confidence            778889999999999999988644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=3.1e-11  Score=88.78  Aligned_cols=126  Identities=25%  Similarity=0.310  Sum_probs=50.6

Q ss_pred             cCCCCCcEEEecCCccCCCCCcccc-CCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccc-cCCCC
Q 048688           98 FTTYTLKDVSFRENQLTGVFPSFIF-NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL-SNCTY  175 (244)
Q Consensus        98 ~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~  175 (244)
                      .+..++++|+|.+|.++.+ . .+. .+.+|+.|++++|.+. .+. ++ ..++.|++|++++|.++ .+...+ ..+++
T Consensus        16 ~n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~-~l~-~l-~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQIT-KLE-GL-PGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-T-----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccc-c-chhhhhcCCCEEECCCCCCc-ccc-Cc-cChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            3455789999999998743 2 344 5788999999999997 664 45 67899999999999998 454444 46889


Q ss_pred             CcEEeeccCcccccC-CccccCCCCCCEEEccCCcccccCCc----cccCCCCCCEEEcc
Q 048688          176 LRILSLAYNDFSGAV-PKDIGNLTKLMGLYLGRNRLQGEIPR----EFGNLAELEQMSLA  230 (244)
Q Consensus       176 L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~  230 (244)
                      |+.|++++|.+.... -..+..+++|+.|++.+|+++.. +.    .+..+|+|+.||-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            999999999886432 24567889999999999999843 32    35678899988753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=7.1e-12  Score=101.55  Aligned_cols=183  Identities=21%  Similarity=0.223  Sum_probs=103.6

Q ss_pred             CCCceEEEEeCCCcceeccC--ccCCCCCCCCEEeCCCCCCCCC--CCccccCCCCCcEEEecCCccCCCCCccc-cCCC
Q 048688           51 HSHKVTALNISGLNLTGTIP--SQLGNLSSLQSLDLSFNRLSGS--IPSAIFTTYTLKDVSFRENQLTGVFPSFI-FNKS  125 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~~~~-~~l~  125 (244)
                      ...+++.+.+.++.+. ..+  +....+++++.|+++.|-+..+  +..-...+|+|+.|+++.|.+.....+.. ..++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            3456677777777665 222  3555677788888877755422  22233467777888887777653222211 1456


Q ss_pred             CCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccC-CccccCCCCCCEEE
Q 048688          126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV-PKDIGNLTKLMGLY  204 (244)
Q Consensus       126 ~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~  204 (244)
                      .|+.|.++.|+++..-...+.-.+++++.|.+.+|............+..|+.|+|++|++.... -...+.++.|+.|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            67777777777763322333345677777777766422122222334556677777777654211 13345666677777


Q ss_pred             ccCCcccc-cCCcc-----ccCCCCCCEEEccCCcc
Q 048688          205 LGRNRLQG-EIPRE-----FGNLAELEQMSLAENNL  234 (244)
Q Consensus       205 l~~n~l~~-~~~~~-----l~~l~~L~~L~l~~n~l  234 (244)
                      ++.|.+.. ..|+.     ...+++|++|++..|++
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            77666653 12333     34556677777777766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=1.3e-11  Score=95.98  Aligned_cols=129  Identities=22%  Similarity=0.263  Sum_probs=77.0

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +..++.+|+++|.++ .+.+++.-.+.++.|++++|.+. .+. .+..+++|+.|++++|.++ .....-..+-++++|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            445666677777666 45666666666777777777665 322 2566666777777766665 2233333456666666


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEccccccccc-CCccccCCCCCcEEeeccCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG-IPSTLSNCTYLRILSLAYNDFS  187 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~  187 (244)
                      +.+|.+. .+ .++ ..+.+|..|++.+|+|... --..+++++.|+++.|.+|++.
T Consensus       359 La~N~iE-~L-SGL-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  359 LAQNKIE-TL-SGL-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhhHh-hh-hhh-HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            6666664 33 334 4566666677776666521 1135666666677666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=1.3e-11  Score=96.05  Aligned_cols=130  Identities=25%  Similarity=0.324  Sum_probs=56.3

Q ss_pred             CCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEe
Q 048688          101 YTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILS  180 (244)
Q Consensus       101 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  180 (244)
                      ..|+++++++|.++ .+..+..-.|.++.|+++.|.+. .+. ++ ..+++|++|++++|.++ .+..+-.++-+.++|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nL-a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NL-AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hh-hhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            34445555555444 22233334445555555555543 222 22 34445555555555443 2222222334444555


Q ss_pred             eccCcccccCCccccCCCCCCEEEccCCcccc-cCCccccCCCCCCEEEccCCccCcc
Q 048688          181 LAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       181 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      |+.|.+..  -..+..+-+|..||+.+|++.. +-...++.+|-|+.+.+.+|++.++
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            55554431  1123334444555555554432 1123344555555555555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=3.5e-10  Score=68.74  Aligned_cols=61  Identities=34%  Similarity=0.492  Sum_probs=44.6

Q ss_pred             CCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 048688          174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL  234 (244)
Q Consensus       174 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  234 (244)
                      ++|++|++++|.++...+..|..+++|++|++++|.++...++.|..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777755556777777777777777777766666777777788888777764

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=6e-11  Score=96.27  Aligned_cols=183  Identities=22%  Similarity=0.209  Sum_probs=129.3

Q ss_pred             CCCceEEEEeCCCccee--ccCccCCCCCCCCEEeCCCCCCCCCCCc-cccCCCCCcEEEecCCccCCCCC-ccccCCCC
Q 048688           51 HSHKVTALNISGLNLTG--TIPSQLGNLSSLQSLDLSFNRLSGSIPS-AIFTTYTLKDVSFRENQLTGVFP-SFIFNKSS  126 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~  126 (244)
                      .+++++.|++++|-+..  .+......+++|+.|+++.|.+...... .-..+++|+.|.++.|.++.... ..+..+|+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            36789999999997652  2444556889999999999987622211 12367889999999999874322 23446799


Q ss_pred             CCEEEccCCC-CCC-cCChhhhCCCCCCcEEEcccccccccCC--ccccCCCCCcEEeeccCcccccC-Ccc-----ccC
Q 048688          127 LQHLDFSRNT-LSG-EIPANICSSLPFLDYLYLSKNMLHGGIP--STLSNCTYLRILSLAYNDFSGAV-PKD-----IGN  196 (244)
Q Consensus       127 L~~L~l~~~~-~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~-~~~-----~~~  196 (244)
                      |+.|++..|. +.. ..+.   ..+..|++|++++|.+.. .+  ...+.++.|..|+++.+.+.... |+.     ...
T Consensus       224 l~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATST---KILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             HHHhhhhcccccceecchh---hhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            9999999994 221 2222   236678999999998863 33  35677889999999999876432 322     245


Q ss_pred             CCCCCEEEccCCcccc-cCCccccCCCCCCEEEccCCccCcc
Q 048688          197 LTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       197 ~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      +++|+.|++..|++.+ .--..+..+++|+.|.+..|.++..
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            7899999999999853 1123355677888888888888754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.94  E-value=6.1e-11  Score=93.66  Aligned_cols=183  Identities=20%  Similarity=0.186  Sum_probs=127.5

Q ss_pred             CCceEEEEeCCCcceeccC----ccCCCCCCCCEEeCCCCCCCCCCCc-------------cccCCCCCcEEEecCCccC
Q 048688           52 SHKVTALNISGLNLTGTIP----SQLGNLSSLQSLDLSFNRLSGSIPS-------------AIFTTYTLKDVSFRENQLT  114 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~-------------~l~~l~~L~~L~l~~~~l~  114 (244)
                      .++++.|+|+.|-+...-+    +.+..+..|++|.+.+|.+......             ....-+.|+++...+|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            3488889999887653222    3344678888999998877622111             1234567899998888876


Q ss_pred             CC----CCccccCCCCCCEEEccCCCCCCcC---ChhhhCCCCCCcEEEcccccccc----cCCccccCCCCCcEEeecc
Q 048688          115 GV----FPSFIFNKSSLQHLDFSRNTLSGEI---PANICSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLAY  183 (244)
Q Consensus       115 ~~----~~~~~~~l~~L~~L~l~~~~~~~~l---~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~  183 (244)
                      ..    ....+...+.|+.+.++.|.|...-   ....+..+++|+.|++.+|.++.    .+.+.+..+++|+.|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            32    2234566788999999998875221   11223678899999999998763    3456677788999999999


Q ss_pred             CcccccCCccc-----cCCCCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCcc
Q 048688          184 NDFSGAVPKDI-----GNLTKLMGLYLGRNRLQG----EIPREFGNLAELEQMSLAENNL  234 (244)
Q Consensus       184 n~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l  234 (244)
                      |.+......++     ...++|+.+.+.+|.++.    .+..++...+.|..|++++|.+
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            98764333222     346889999999998874    2334456788899999999988

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.90  E-value=3.6e-10  Score=89.38  Aligned_cols=162  Identities=25%  Similarity=0.276  Sum_probs=88.5

Q ss_pred             CCCCCCCCEEeCCCCCCCCCCCccc----cCCCCCcEEEecCCccCCC-------------CCccccCCCCCCEEEccCC
Q 048688           73 LGNLSSLQSLDLSFNRLSGSIPSAI----FTTYTLKDVSFRENQLTGV-------------FPSFIFNKSSLQHLDFSRN  135 (244)
Q Consensus        73 ~~~l~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L~l~~~~l~~~-------------~~~~~~~l~~L~~L~l~~~  135 (244)
                      +..+++|++++||.|.+....+..|    ..+..|++|+|.+|.+...             ....+..-+.|+.+....|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            3344566666666665543333222    3455566666666654311             1111233455666666666


Q ss_pred             CCCCcCCh----hhhCCCCCCcEEEcccccccc----cCCccccCCCCCcEEeeccCccccc----CCccccCCCCCCEE
Q 048688          136 TLSGEIPA----NICSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLAYNDFSGA----VPKDIGNLTKLMGL  203 (244)
Q Consensus       136 ~~~~~l~~----~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L  203 (244)
                      .+- .-+.    ..++..+.|+.+.+..|.|..    .+...+..+++|+.|++++|-++..    +...+..+++|+.|
T Consensus       168 rle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  168 RLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             ccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            553 2211    223455667777777766642    1223456677777788777776521    22344566777777


Q ss_pred             EccCCcccccCCcc----c-cCCCCCCEEEccCCccC
Q 048688          204 YLGRNRLQGEIPRE----F-GNLAELEQMSLAENNLQ  235 (244)
Q Consensus       204 ~l~~n~l~~~~~~~----l-~~l~~L~~L~l~~n~l~  235 (244)
                      +++.|.+.......    + ...+.|++|.+.+|.++
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            77777776432222    2 23577778887777664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=2.5e-09  Score=64.95  Aligned_cols=59  Identities=34%  Similarity=0.388  Sum_probs=29.3

Q ss_pred             CCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCc
Q 048688          151 FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNR  209 (244)
Q Consensus       151 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  209 (244)
                      +|++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555543333444555555555555555544444455555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.82  E-value=1.9e-09  Score=97.70  Aligned_cols=182  Identities=22%  Similarity=0.250  Sum_probs=94.2

Q ss_pred             CCceEEEEeCCCc--ceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCE
Q 048688           52 SHKVTALNISGLN--LTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH  129 (244)
Q Consensus        52 ~~~l~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  129 (244)
                      .+++++|-+..+.  +.....+.|..++.|++||+++|.-.+.+|..++.+-+||+|+++++.+. .+|..+..+..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            3456666666553  33344445666666666666665444466666666666666666666666 56666666666666


Q ss_pred             EEccCCCCCCcCChhhhCCCCCCcEEEccccccc--ccCCccccCCCCCcEEeeccCcccccCCccccCCCCC----CEE
Q 048688          130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH--GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKL----MGL  203 (244)
Q Consensus       130 L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L  203 (244)
                      |++..+.....+ .++...+++|++|.+......  ...-..+..+..|+.+........ .+. .+..+..|    +.+
T Consensus       623 Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~-~~e-~l~~~~~L~~~~~~l  699 (889)
T KOG4658|consen  623 LNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL-LLE-DLLGMTRLRSLLQSL  699 (889)
T ss_pred             eccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH-hHh-hhhhhHHHHHHhHhh
Confidence            666665544223 333244666666666544311  111122233334444333222110 000 11111111    122


Q ss_pred             EccCCcccccCCccccCCCCCCEEEccCCccCccc
Q 048688          204 YLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       204 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  238 (244)
                      .+.++... ..+..+..+.+|+.|.+.++.+....
T Consensus       700 ~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~  733 (889)
T KOG4658|consen  700 SIEGCSKR-TLISSLGSLGNLEELSILDCGISEIV  733 (889)
T ss_pred             hhcccccc-eeecccccccCcceEEEEcCCCchhh
Confidence            22223332 44556778888999999888876543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=5.3e-11  Score=92.39  Aligned_cols=179  Identities=20%  Similarity=0.167  Sum_probs=121.5

Q ss_pred             CceEEEEeCCCccee-ccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCc-cCCC-CCccccCCCCCCE
Q 048688           53 HKVTALNISGLNLTG-TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ-LTGV-FPSFIFNKSSLQH  129 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~-l~~~-~~~~~~~l~~L~~  129 (244)
                      .+++++|+++..++. .+-..+..+++|+.|.+.++.+.+.+...+.+-.+|+.|+++++. ++.. .--.+.++..|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            457888888887762 234455678889999999999988888888888899999998875 3321 1123567889999


Q ss_pred             EEccCCCCCCcCChhhhC-CCCCCcEEEccccccc--c-cCCccccCCCCCcEEeeccCc-ccccCCccccCCCCCCEEE
Q 048688          130 LDFSRNTLSGEIPANICS-SLPFLDYLYLSKNMLH--G-GIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNLTKLMGLY  204 (244)
Q Consensus       130 L~l~~~~~~~~l~~~~~~-~~~~L~~L~l~~~~~~--~-~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~  204 (244)
                      |+++++.........+.. -..+|..|+++++.-.  . .+..-...+++|.+|+|++|. ++...--.+.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            999999775333222111 1356778888876432  1 122223468899999999885 3322233566788899999


Q ss_pred             ccCCcccccCCcc---ccCCCCCCEEEccCCc
Q 048688          205 LGRNRLQGEIPRE---FGNLAELEQMSLAENN  233 (244)
Q Consensus       205 l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~  233 (244)
                      ++.|..  .+|..   +...+.|.+|++.++-
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            988763  34443   4567888999887763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.67  E-value=3.9e-09  Score=89.11  Aligned_cols=173  Identities=30%  Similarity=0.394  Sum_probs=79.4

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      .+++.+++.++.+.. +...+..+.+|++|++++|.|+..  ..+..++.|+.|++.+|.+...  ..+..+..|+.+++
T Consensus        95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence            445555555555542 222244455555555555555421  1233444455555555555421  12233555555555


Q ss_pred             cCCCCCCcCChh-hhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCC--CCCEEEccCCc
Q 048688          133 SRNTLSGEIPAN-ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLT--KLMGLYLGRNR  209 (244)
Q Consensus       133 ~~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~  209 (244)
                      ++|.+. .+... . ..+..++.+.+.+|.+..  ...+..+..+..+++..|.++..-+  +....  .|+.+++.+|+
T Consensus       170 ~~n~i~-~ie~~~~-~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  170 SYNRIV-DIENDEL-SELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR  243 (414)
T ss_pred             Ccchhh-hhhhhhh-hhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence            555554 33321 1 334455555555554431  1111122222223444444331111  11111  25666677776


Q ss_pred             ccccCCccccCCCCCCEEEccCCccCcc
Q 048688          210 LQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       210 l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      +. ..+..+..+..+..|++.+|++...
T Consensus       244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  244 IS-RSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             cc-cccccccccccccccchhhcccccc
Confidence            65 3334555666667777777766554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.58  E-value=4.5e-10  Score=96.72  Aligned_cols=126  Identities=30%  Similarity=0.416  Sum_probs=78.6

Q ss_pred             CcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCc-cccCCCCCcEEee
Q 048688          103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS-TLSNCTYLRILSL  181 (244)
Q Consensus       103 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l  181 (244)
                      |...++++|.+. .+...+.-++.+++|+|+.|+++ .+. .+ ..+++|++||+++|.++ .+|. ....+ .|+.|.+
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~L-r~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NL-RRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HH-Hhcccccccccccchhc-cccccchhhh-hheeeee
Confidence            334444455544 33444555677788888888776 443 44 66778888888888776 4443 22233 3788888


Q ss_pred             ccCcccccCCccccCCCCCCEEEccCCcccccC-CccccCCCCCCEEEccCCccCc
Q 048688          182 AYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI-PREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       182 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      ++|.++..  ..+.++.+|+.||++.|-+.+.- -.-++.+..|+.|++.||++-+
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            88877522  24566777888888887766421 1224566777888888887644

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=5.9e-08  Score=88.23  Aligned_cols=129  Identities=23%  Similarity=0.243  Sum_probs=83.2

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCC--CCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNR--LSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      ..++++.+.++.+. .++... ..+.|+.|-+..|.  +.......|..++.|++|++++|.-.+.+|..++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            45566666666655 333333 22367777777764  332233335567777777777766555777777777777777


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND  185 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  185 (244)
                      +++++.+. .+|.++ ..+..|.+|++..+.....+|.....+.+|++|.+....
T Consensus       601 ~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            77777776 777777 677777777777665544555666667777777776653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=4.1e-09  Score=88.96  Aligned_cols=172  Identities=26%  Similarity=0.276  Sum_probs=95.1

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS  133 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  133 (244)
                      .+..+.++.+.+. .+-..+..+.+|+.+++..|.|. .+...+..+++|++|++++|.|+...  .+..++.|+.|++.
T Consensus        73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence            3444445555444 22334556666777777777665 33333556667777777777766432  23455557777777


Q ss_pred             CCCCCCcCChhhhCCCCCCcEEEcccccccccCCcc-ccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST-LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      +|.+. .+.. + ..+..|+.+++++|.+...-+ . ...+.+++.+.+..|.+..  ...+.....+..+++..|.++.
T Consensus       149 ~N~i~-~~~~-~-~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  149 GNLIS-DISG-L-ESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             cCcch-hccC-C-ccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee
Confidence            77665 4432 2 346666777777776653222 1 3556666667676666542  1223333444444666666652


Q ss_pred             cCCccccCCC--CCCEEEccCCccCcc
Q 048688          213 EIPREFGNLA--ELEQMSLAENNLQAL  237 (244)
Q Consensus       213 ~~~~~l~~l~--~L~~L~l~~n~l~~~  237 (244)
                      .-  .+..+.  +|+.+++++|++..+
T Consensus       223 ~~--~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  223 LE--GLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             cc--CcccchhHHHHHHhcccCccccc
Confidence            11  122222  378888888887754

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.51  E-value=1e-07  Score=53.29  Aligned_cols=40  Identities=48%  Similarity=1.038  Sum_probs=29.9

Q ss_pred             hhHHHHHHHHHHhcccCCcchhcCCCCCC--CCCcceeeeeeC
Q 048688            9 TTDQDALLALKAHITHDPTNFLAKNWNTS--APVCNWTGVTCD   49 (244)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~~~~~~~w~~~--~~~c~~~g~~~~   49 (244)
                      +.|+++|++||.++..++...+.. |...  .++|.|.||.|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence            579999999999997667667777 9887  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.43  E-value=4.4e-09  Score=72.83  Aligned_cols=135  Identities=24%  Similarity=0.362  Sum_probs=86.6

Q ss_pred             CCCEEeCCCCCCCCCCCcccc---CCCCCcEEEecCCccCCCCCcccc-CCCCCCEEEccCCCCCCcCChhhhCCCCCCc
Q 048688           78 SLQSLDLSFNRLSGSIPSAIF---TTYTLKDVSFRENQLTGVFPSFIF-NKSSLQHLDFSRNTLSGEIPANICSSLPFLD  153 (244)
Q Consensus        78 ~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~  153 (244)
                      .+..++|+.+.+. .+++..+   ....|...+|++|.+. .+|..|. ..+.++.|++..|.++ .+|..+ ..++.|+
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aLr  103 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPALR  103 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHhh
Confidence            3555666666664 4444444   3345666678888877 4454444 4468888888888887 888885 7888888


Q ss_pred             EEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccc
Q 048688          154 YLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF  218 (244)
Q Consensus       154 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  218 (244)
                      .++++.|.+. ..|..+..+.++..|+..+|.+. .+|-.+..-......++.++++.+.-+..+
T Consensus       104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence            8888888887 56777777778888888888765 333223222333334455666665444433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=6.1e-07  Score=50.23  Aligned_cols=39  Identities=31%  Similarity=0.572  Sum_probs=25.1

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCccCccc
Q 048688          199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       199 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  238 (244)
                      +|++|++++|.++ .+|..++.+++|+.|++++|+++.+.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            5677777777776 45555677777777777777776543

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=8.9e-08  Score=74.78  Aligned_cols=84  Identities=25%  Similarity=0.308  Sum_probs=43.9

Q ss_pred             CceEEEEeCCCcce--eccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC-CCccccCCCCCCE
Q 048688           53 HKVTALNISGLNLT--GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV-FPSFIFNKSSLQH  129 (244)
Q Consensus        53 ~~l~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~  129 (244)
                      .+|+.+|+.+|.++  ..+...+.+++.|+.|+++.|.+...+........+|++|.|.++.+... ....+..+|.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            45666666666654  22334445666666666666655422211113445666666666655432 2233445566666


Q ss_pred             EEccCCC
Q 048688          130 LDFSRNT  136 (244)
Q Consensus       130 L~l~~~~  136 (244)
                      |+++.|.
T Consensus       151 lHmS~N~  157 (418)
T KOG2982|consen  151 LHMSDNS  157 (418)
T ss_pred             hhhccch
Confidence            6666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=4.4e-09  Score=81.95  Aligned_cols=156  Identities=22%  Similarity=0.211  Sum_probs=110.8

Q ss_pred             CCCEEeCCCCCCCC-CCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC-CCCcCChhhhCCCCCCcEE
Q 048688           78 SLQSLDLSFNRLSG-SIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT-LSGEIPANICSSLPFLDYL  155 (244)
Q Consensus        78 ~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~l~~~~~~~~~~L~~L  155 (244)
                      .|+++||++..|+. ....-+..+.+|+.|.+.++.+.+.+...+..-.+|+.++++++. ++..-...++.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            48899999887762 234455678899999999999887777778888999999998864 5533445566788999999


Q ss_pred             EcccccccccC-CccccC-CCCCcEEeeccCcc--ccc-CCccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEEc
Q 048688          156 YLSKNMLHGGI-PSTLSN-CTYLRILSLAYNDF--SGA-VPKDIGNLTKLMGLYLGRNR-LQGEIPREFGNLAELEQMSL  229 (244)
Q Consensus       156 ~l~~~~~~~~~-~~~l~~-~~~L~~L~l~~n~~--~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l  229 (244)
                      ++++|...... ...+.. -..|..|+++++.-  ... +.--...+++|.+|||+.|. ++......+-.++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            99999765321 111222 24688888888642  111 11123578999999999874 55445556778899999999


Q ss_pred             cCCc
Q 048688          230 AENN  233 (244)
Q Consensus       230 ~~n~  233 (244)
                      ++|-
T Consensus       346 sRCY  349 (419)
T KOG2120|consen  346 SRCY  349 (419)
T ss_pred             hhhc
Confidence            9884

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.22  E-value=4.4e-07  Score=70.16  Aligned_cols=85  Identities=20%  Similarity=0.375  Sum_probs=38.8

Q ss_pred             CceEEEEeCCCcceec----cCccCCCCCCCCEEeCCCCCCC---CCC-------CccccCCCCCcEEEecCCccCCCCC
Q 048688           53 HKVTALNISGLNLTGT----IPSQLGNLSSLQSLDLSFNRLS---GSI-------PSAIFTTYTLKDVSFRENQLTGVFP  118 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~---~~~-------~~~l~~l~~L~~L~l~~~~l~~~~~  118 (244)
                      ..++.+++++|.+...    +...++.-++|++..++.--..   +.+       ..++.+||.|+..+|++|.+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4556666666665422    2333334455555555432111   111       1222345555555555555443333


Q ss_pred             c----cccCCCCCCEEEccCCCC
Q 048688          119 S----FIFNKSSLQHLDFSRNTL  137 (244)
Q Consensus       119 ~----~~~~l~~L~~L~l~~~~~  137 (244)
                      .    .+++...|.+|.+++|++
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCC
Confidence            2    233445555555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.21  E-value=2.9e-08  Score=68.82  Aligned_cols=106  Identities=25%  Similarity=0.319  Sum_probs=80.8

Q ss_pred             CCcEEEecCCccCCCCCcc---ccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcE
Q 048688          102 TLKDVSFRENQLTGVFPSF---IFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI  178 (244)
Q Consensus       102 ~L~~L~l~~~~l~~~~~~~---~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  178 (244)
                      .+..++|+.|.+- .+++.   +.....|+.+++++|.+. ..|+.+-..++.+++++++.|.+. .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3556677777654 23333   334455667789999998 888877566778899999999998 67888999999999


Q ss_pred             EeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          179 LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       179 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      |+++.|.+. ..|..+..+.++..|+..+|.+.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            999999987 66777777888888888888776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.21  E-value=9.3e-09  Score=88.85  Aligned_cols=127  Identities=28%  Similarity=0.317  Sum_probs=96.5

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688           78 SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL  157 (244)
Q Consensus        78 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l  157 (244)
                      .|...++++|.+. ....++.-++.++.|+|++|+++...  .+..++.|++|||+.|.+. .+|.-- ..-.+|+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~-~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLS-MVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccc-hhhhhheeeee
Confidence            4666777888776 67777888899999999999998443  6889999999999999997 777533 22234899999


Q ss_pred             ccccccccCCccccCCCCCcEEeeccCcccccCC-ccccCCCCCCEEEccCCccc
Q 048688          158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVP-KDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~  211 (244)
                      .+|.++ .+ ..+.++.+|+.|++++|-+.+--. ..+..+..|..|+|.||++.
T Consensus       240 rnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            999886 32 356788999999999998753211 12345677889999999875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.12  E-value=8.1e-07  Score=78.98  Aligned_cols=134  Identities=22%  Similarity=0.262  Sum_probs=85.8

Q ss_pred             CCCcEEEecCCccC-CCCCcccc-CCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcE
Q 048688          101 YTLKDVSFRENQLT-GVFPSFIF-NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI  178 (244)
Q Consensus       101 ~~L~~L~l~~~~l~-~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  178 (244)
                      .+|++|++++.... ...+..++ -+|.|+.|.+++-.+...=-..++.++++|..||+++++++. + ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence            46888888775532 12222232 468888888888666422223455778888888888888863 2 56778888888


Q ss_pred             EeeccCcccc-cCCccccCCCCCCEEEccCCcccccC--C----ccccCCCCCCEEEccCCccCc
Q 048688          179 LSLAYNDFSG-AVPKDIGNLTKLMGLYLGRNRLQGEI--P----REFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       179 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      |.+.+-.+.. ..-..+..+++|+.||++..+..+..  .    +.-..+|+|+.||++++.+..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            8877765542 11234567888888888876554211  0    112347888888888876654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.12  E-value=7.3e-06  Score=60.74  Aligned_cols=126  Identities=21%  Similarity=0.213  Sum_probs=78.5

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688           79 LQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS  158 (244)
Q Consensus        79 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~  158 (244)
                      =+++++.+.++. .+-.-=....+...++|++|.+. .. ..|..+++|.+|.+..|.|+ .+.+.+...+++|..|.+.
T Consensus        21 e~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc-chhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            345566655543 21111112345667788888775 22 23567788888888888887 7766665556778888888


Q ss_pred             ccccccc-CCccccCCCCCcEEeeccCcccccCC---ccccCCCCCCEEEccCC
Q 048688          159 KNMLHGG-IPSTLSNCTYLRILSLAYNDFSGAVP---KDIGNLTKLMGLYLGRN  208 (244)
Q Consensus       159 ~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n  208 (244)
                      +|.+... .-.-+..++.|+.|.+-+|+++...-   -.+..+++|+.||.+.-
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8877621 11235567788888888887753211   13456778888887553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=6.7e-06  Score=45.98  Aligned_cols=15  Identities=33%  Similarity=0.574  Sum_probs=5.7

Q ss_pred             CCCCCCEEEccCCCC
Q 048688          123 NKSSLQHLDFSRNTL  137 (244)
Q Consensus       123 ~l~~L~~L~l~~~~~  137 (244)
                      .+++|++|++++|.+
T Consensus        22 ~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen   22 NLPNLETLNLSNNPI   36 (44)
T ss_dssp             TCTTSSEEEETSSCC
T ss_pred             CCCCCCEEEecCCCC
Confidence            333333333333333

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.01  E-value=5e-05  Score=63.08  Aligned_cols=134  Identities=17%  Similarity=0.231  Sum_probs=79.6

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC-ccCCCCCccccCCCCCCEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN-QLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L  130 (244)
                      +..++.|++++|.++ .+|. +  -.+|++|.++++.-...+|..+  .++|++|.+++| .+. .+|      ..|+.|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceE
Confidence            356788999998777 4552 2  2369999998754333566544  357999999887 443 333      357777


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEccccccc--ccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCC
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH--GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN  208 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  208 (244)
                      ++..+... .++ .+   .++|+.|.+.++...  ..++..  -.++|++|++.+|... ..|..+.  .+|+.|+++.+
T Consensus       118 ~L~~n~~~-~L~-~L---PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATD-SIK-NV---PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCc-ccc-cC---cchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            77765543 221 11   234566666432211  011111  1257999999988754 3444332  57888888765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=2.4e-06  Score=67.01  Aligned_cols=187  Identities=18%  Similarity=0.187  Sum_probs=119.4

Q ss_pred             CCceEEEEeCCCcceec-cCccCC-CCCCCCEEeCCCCCCCCC--CCccccCCCCCcEEEecCCccCCCCCccccCCCCC
Q 048688           52 SHKVTALNISGLNLTGT-IPSQLG-NLSSLQSLDLSFNRLSGS--IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSL  127 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~-~~~~~~-~l~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  127 (244)
                      ++.++.+.+.++.+..+ ....|+ ....++++|+.+|.|.++  +..-+.++|.|++|++++|.+...+........+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            44455666777765421 112222 457899999999999854  45566789999999999999874433322467899


Q ss_pred             CEEEccCCCCCCcCChhhhCCCCCCcEEEccccccccc--CCcccc---------------------------CCCCCcE
Q 048688          128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG--IPSTLS---------------------------NCTYLRI  178 (244)
Q Consensus       128 ~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~---------------------------~~~~L~~  178 (244)
                      +.|-|.+..+...-.......++.+++|.++.|..+..  ......                           .++++..
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            99999998876444444446788888888888843210  000010                           1234444


Q ss_pred             EeeccCcccc-cCCccccCCCCCCEEEccCCcccc-cCCccccCCCCCCEEEccCCccCccc
Q 048688          179 LSLAYNDFSG-AVPKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       179 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~  238 (244)
                      +.+..|++.. ...+....++.+.-|.|+.+.+.. +--+.+..+++|..|.+.++++....
T Consensus       204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            5555554421 122334445666677777777753 23456788999999999999987654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.89  E-value=9.6e-06  Score=62.93  Aligned_cols=165  Identities=20%  Similarity=0.180  Sum_probs=101.0

Q ss_pred             ccCCCCCCCCEEeCCCCCCCCCCCccc----cCCCCCcEEEecCCccCCCCCcc-------------ccCCCCCCEEEcc
Q 048688           71 SQLGNLSSLQSLDLSFNRLSGSIPSAI----FTTYTLKDVSFRENQLTGVFPSF-------------IFNKSSLQHLDFS  133 (244)
Q Consensus        71 ~~~~~l~~L~~L~l~~n~i~~~~~~~l----~~l~~L~~L~l~~~~l~~~~~~~-------------~~~l~~L~~L~l~  133 (244)
                      +++..|++|+..+++.|.+....|..+    .....|.+|.+++|.+.......             ..+-|.|+.++..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            455678888888888887775555544    34567888888888764221111             2345778888887


Q ss_pred             CCCCCCcCChhh----hCCCCCCcEEEccccccccc-----CCccccCCCCCcEEeeccCccccc----CCccccCCCCC
Q 048688          134 RNTLSGEIPANI----CSSLPFLDYLYLSKNMLHGG-----IPSTLSNCTYLRILSLAYNDFSGA----VPKDIGNLTKL  200 (244)
Q Consensus       134 ~~~~~~~l~~~~----~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L  200 (244)
                      .|.+. ..+...    +..-..|.++.+..|.|...     .-..+..+.+|+.|+++.|.++-.    +...+..++.|
T Consensus       166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            77764 333221    12224677788877777521     011234567888888888877522    22344566778


Q ss_pred             CEEEccCCcccccCCcc----cc--CCCCCCEEEccCCccCc
Q 048688          201 MGLYLGRNRLQGEIPRE----FG--NLAELEQMSLAENNLQA  236 (244)
Q Consensus       201 ~~L~l~~n~l~~~~~~~----l~--~l~~L~~L~l~~n~l~~  236 (244)
                      +.|.+..|.++......    +.  ..++|..|...+|.+.+
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            88888888776433222    21  34667777777776544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.89  E-value=8.2e-05  Score=52.05  Aligned_cols=121  Identities=20%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             ccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCC
Q 048688           97 IFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYL  176 (244)
Q Consensus        97 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  176 (244)
                      |..+.+|+.+.+.. .+.......|..+.+|+.+.+..+ +. .++...|..+.+++.+.+.. .+.......+..++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence            34444444444442 233233334444545555555443 33 44444444554555555543 2221222344445555


Q ss_pred             cEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 048688          177 RILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL  224 (244)
Q Consensus       177 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  224 (244)
                      +.+.+..+ +.......+..+ .++.+.+.. .+.......|..+++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555443 222233334444 555555543 2222333444444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.88  E-value=3.2e-05  Score=57.40  Aligned_cols=126  Identities=18%  Similarity=0.201  Sum_probs=86.9

Q ss_pred             CcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeec
Q 048688          103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA  182 (244)
Q Consensus       103 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  182 (244)
                      -+.+++.+.++... ...-........+|+++|.+. .++ .+ ..++.|.+|.++.|+|+..-|..-..+++|..|.|.
T Consensus        21 e~e~~LR~lkip~i-enlg~~~d~~d~iDLtdNdl~-~l~-~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI-ENLGATLDQFDAIDLTDNDLR-KLD-NL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccch-hhccccccccceecccccchh-hcc-cC-CCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            45566666665422 111113456778999999885 443 33 678899999999999985555544566789999999


Q ss_pred             cCcccccC-CccccCCCCCCEEEccCCcccccC---CccccCCCCCCEEEccCC
Q 048688          183 YNDFSGAV-PKDIGNLTKLMGLYLGRNRLQGEI---PREFGNLAELEQMSLAEN  232 (244)
Q Consensus       183 ~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n  232 (244)
                      +|.+.... -..+..+++|++|.+-+|+++..-   .-.+..+++|+.||+++-
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99876432 134567889999999999887321   123567899999998754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.79  E-value=8.2e-06  Score=72.74  Aligned_cols=149  Identities=22%  Similarity=0.201  Sum_probs=91.6

Q ss_pred             CCCCEEeCCCCCCC--CCCCccccCCCCCcEEEecCCccCCC-CCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCc
Q 048688           77 SSLQSLDLSFNRLS--GSIPSAIFTTYTLKDVSFRENQLTGV-FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLD  153 (244)
Q Consensus        77 ~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~  153 (244)
                      .+|++|++++...-  ++...--..+|+|+.|.+.+-.+... +-....++|+|..||+++++++ .+ .++ +.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHH
Confidence            46788888775432  12222224578888888887665422 2233456788999999998886 55 566 7888888


Q ss_pred             EEEcccccccc-cCCccccCCCCCcEEeeccCcccccC--C----ccccCCCCCCEEEccCCcccccCCcc-ccCCCCCC
Q 048688          154 YLYLSKNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAV--P----KDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELE  225 (244)
Q Consensus       154 ~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~--~----~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~  225 (244)
                      .|.+.+-.+.. ..-..+.++++|+.||++........  .    +.-..++.|+.||.+++.+....-+. +..-++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            88876655542 12235667888889988876532111  1    11134788899999888776533222 22334444


Q ss_pred             EEE
Q 048688          226 QMS  228 (244)
Q Consensus       226 ~L~  228 (244)
                      .+.
T Consensus       279 ~i~  281 (699)
T KOG3665|consen  279 QIA  281 (699)
T ss_pred             hhh
Confidence            444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.79  E-value=0.00021  Score=59.52  Aligned_cols=133  Identities=16%  Similarity=0.192  Sum_probs=61.1

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC-CCCCcCChhhhCCCCCCc
Q 048688           75 NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN-TLSGEIPANICSSLPFLD  153 (244)
Q Consensus        75 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~l~~~~~~~~~~L~  153 (244)
                      .+.++++|++++|.+. .+|.   -..+|+.|.++++.-...+|..+  .++|++|++++| .+. .+|.       +|+
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------SVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------ccc
Confidence            3456666677666555 4441   12346666666543322444433  246666666665 332 3332       344


Q ss_pred             EEEccccccc--ccCCccccCCCCCcEEeeccCc-cc-ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 048688          154 YLYLSKNMLH--GGIPSTLSNCTYLRILSLAYND-FS-GAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL  229 (244)
Q Consensus       154 ~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~-~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  229 (244)
                      .|++..+...  ..+|.      +|+.|.+.++. .. ...|..  -..+|++|++++|... .+|..+.  .+|+.|++
T Consensus       116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             eEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            5555443321  12222      34455443221 10 011111  1145666666666644 3343332  35666666


Q ss_pred             cCC
Q 048688          230 AEN  232 (244)
Q Consensus       230 ~~n  232 (244)
                      +.+
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.76  E-value=0.00017  Score=50.40  Aligned_cols=106  Identities=25%  Similarity=0.296  Sum_probs=36.7

Q ss_pred             cCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCC
Q 048688           72 QLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF  151 (244)
Q Consensus        72 ~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~  151 (244)
                      .|..+.+|+.+.+.. .+......+|..+.+|+.+.+..+ +.......+..+++++.+.+.. .+. .++...|...++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence            344444444444442 222223334444444555554442 3323333344444555555543 222 344444444555


Q ss_pred             CcEEEcccccccccCCccccCCCCCcEEeecc
Q 048688          152 LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY  183 (244)
Q Consensus       152 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  183 (244)
                      ++.+.+..+ +...-...+..+ .++.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            555555433 221222334444 555554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=4.4e-05  Score=58.79  Aligned_cols=40  Identities=20%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             CCCCCcEEEecCC--ccCCCCCccccCCCCCCEEEccCCCCC
Q 048688           99 TTYTLKDVSFREN--QLTGVFPSFIFNKSSLQHLDFSRNTLS  138 (244)
Q Consensus        99 ~l~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~  138 (244)
                      .+++|++|.++.|  ++.+-++.....+|+|+++++++|.+.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            4455555555555  333333333333455555555555553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=1e-05  Score=62.97  Aligned_cols=80  Identities=26%  Similarity=0.298  Sum_probs=34.8

Q ss_pred             CCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCC--ccccCCCCCcEE
Q 048688          102 TLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP--STLSNCTYLRIL  179 (244)
Q Consensus       102 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L  179 (244)
                      +.++|++.++.+.++  +....|+.|+.|.|+-|.|+ .+.+ + ..+++|++|.+..|.|.+ +.  ..+.++++|+.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p-l-~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP-L-QRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh-H-HHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence            344444444444322  12234455555555555554 3322 1 334445555555554432 11  233444555555


Q ss_pred             eeccCccc
Q 048688          180 SLAYNDFS  187 (244)
Q Consensus       180 ~l~~n~~~  187 (244)
                      .|..|+..
T Consensus        94 WL~ENPCc  101 (388)
T KOG2123|consen   94 WLDENPCC  101 (388)
T ss_pred             hhccCCcc
Confidence            55555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=1.3e-05  Score=62.32  Aligned_cols=101  Identities=28%  Similarity=0.404  Sum_probs=76.7

Q ss_pred             CCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCC-ccccCCCCCC
Q 048688          123 NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVP-KDIGNLTKLM  201 (244)
Q Consensus       123 ~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~  201 (244)
                      .+.+.+.|+..|+.+. .|  .++..++.|+.|.++-|.|+..  ..+..|++|+.|.|..|.|..... ..+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            3567788999999887 55  3557899999999999999732  457789999999999998863211 3457889999


Q ss_pred             EEEccCCcccccCCc-----cccCCCCCCEEE
Q 048688          202 GLYLGRNRLQGEIPR-----EFGNLAELEQMS  228 (244)
Q Consensus       202 ~L~l~~n~l~~~~~~-----~l~~l~~L~~L~  228 (244)
                      .|+|..|+-.+.-+.     .+..+++|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999987654332     255678888875

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.02  E-value=0.00037  Score=53.79  Aligned_cols=84  Identities=25%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC--CCCCcCChhhhCCCCCCcEEEcccccccccCCc---cccCC
Q 048688           99 TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN--TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS---TLSNC  173 (244)
Q Consensus        99 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~--~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~  173 (244)
                      .+..|+.|.+.+..++..  ..+-.+++|++|.++.|  .+.+.+..-+ ...++|+++++++|.+..  +.   .+..+
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~--lstl~pl~~l  115 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKD--LSTLRPLKEL  115 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccc--ccccchhhhh
Confidence            344555555555554421  12335667777777777  4444443333 344677777777776652  22   23344


Q ss_pred             CCCcEEeeccCccc
Q 048688          174 TYLRILSLAYNDFS  187 (244)
Q Consensus       174 ~~L~~L~l~~n~~~  187 (244)
                      .+|..|++..|..+
T Consensus       116 ~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVT  129 (260)
T ss_pred             cchhhhhcccCCcc
Confidence            55666666666544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.28  E-value=0.0026  Score=29.59  Aligned_cols=20  Identities=40%  Similarity=0.506  Sum_probs=13.0

Q ss_pred             CCCEEEccCCccCcccCCCCC
Q 048688          223 ELEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       223 ~L~~L~l~~n~l~~~~~~~~~  243 (244)
                      +|++|++++|+++ .+|++|.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            4677777777777 4555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.51  E-value=0.008  Score=27.90  Aligned_cols=19  Identities=42%  Similarity=0.525  Sum_probs=10.9

Q ss_pred             CCEEEccCCcccccCCcccc
Q 048688          200 LMGLYLGRNRLQGEIPREFG  219 (244)
Q Consensus       200 L~~L~l~~n~l~~~~~~~l~  219 (244)
                      |++|++++|.++ .+|..++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            566666666666 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.49  E-value=0.00061  Score=58.59  Aligned_cols=92  Identities=23%  Similarity=0.101  Sum_probs=44.5

Q ss_pred             ccCCCCCCCCEEeCCCC-CCCCCC----CccccCCCCCcEEEecCCc-cCCCCCcccc-CCCCCCEEEccCCC-CCCcCC
Q 048688           71 SQLGNLSSLQSLDLSFN-RLSGSI----PSAIFTTYTLKDVSFRENQ-LTGVFPSFIF-NKSSLQHLDFSRNT-LSGEIP  142 (244)
Q Consensus        71 ~~~~~l~~L~~L~l~~n-~i~~~~----~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~-~l~~L~~L~l~~~~-~~~~l~  142 (244)
                      .....+++|+.|+++++ ......    ......+++|+.|+++.+. ++...-..+. .+++|++|.+.++. ++..--
T Consensus       208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl  287 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL  287 (482)
T ss_pred             HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence            33445666666666652 111011    1122344566666666665 3322222222 25667776655554 332322


Q ss_pred             hhhhCCCCCCcEEEcccccc
Q 048688          143 ANICSSLPFLDYLYLSKNML  162 (244)
Q Consensus       143 ~~~~~~~~~L~~L~l~~~~~  162 (244)
                      ..+...++.|++|+++++..
T Consensus       288 ~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHHHhcCcccEEeeecCcc
Confidence            33334556677777766543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.90  E-value=0.021  Score=24.60  Aligned_cols=14  Identities=29%  Similarity=0.567  Sum_probs=6.5

Q ss_pred             CCCEEEccCCccCc
Q 048688          223 ELEQMSLAENNLQA  236 (244)
Q Consensus       223 ~L~~L~l~~n~l~~  236 (244)
                      +|+.|++++|+++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            45666666666554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.69  E-value=0.024  Score=27.38  Aligned_cols=21  Identities=29%  Similarity=0.475  Sum_probs=13.5

Q ss_pred             CCCCEEEccCCccCcccCCCC
Q 048688          222 AELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       222 ~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ++|+.|++++|+++.+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777776655444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.69  E-value=0.024  Score=27.38  Aligned_cols=21  Identities=29%  Similarity=0.475  Sum_probs=13.5

Q ss_pred             CCCCEEEccCCccCcccCCCC
Q 048688          222 AELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       222 ~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ++|+.|++++|+++.+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777776655444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.00  E-value=0.068  Score=25.72  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=13.4

Q ss_pred             CCCCEEEccCCCCCCcCChhhh
Q 048688          125 SSLQHLDFSRNTLSGEIPANIC  146 (244)
Q Consensus       125 ~~L~~L~l~~~~~~~~l~~~~~  146 (244)
                      ++|++|+|.+|.+. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666777777666 6666553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.00  E-value=0.068  Score=25.72  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=13.4

Q ss_pred             CCCCEEEccCCCCCCcCChhhh
Q 048688          125 SSLQHLDFSRNTLSGEIPANIC  146 (244)
Q Consensus       125 ~~L~~L~l~~~~~~~~l~~~~~  146 (244)
                      ++|++|+|.+|.+. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666777777666 6666553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.65  E-value=8.7e-05  Score=63.53  Aligned_cols=182  Identities=25%  Similarity=0.295  Sum_probs=106.7

Q ss_pred             eEEEEeCCCcceec----cCccCCCCCCCCEEeCCCCCCCCCCCcccc----CC-CCCcEEEecCCccCCC----CCccc
Q 048688           55 VTALNISGLNLTGT----IPSQLGNLSSLQSLDLSFNRLSGSIPSAIF----TT-YTLKDVSFRENQLTGV----FPSFI  121 (244)
Q Consensus        55 l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~----~l-~~L~~L~l~~~~l~~~----~~~~~  121 (244)
                      +..+.+.+|.+...    +...+.....|..|++++|.+.+.....+.    .. ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55667777766532    445556677788888888877643222221    22 3466677777766543    22333


Q ss_pred             cCCCCCCEEEccCCCCCC----cCChhhh---CCCCCCcEEEccccccccc----CCccccCCCC-CcEEeeccCccccc
Q 048688          122 FNKSSLQHLDFSRNTLSG----EIPANIC---SSLPFLDYLYLSKNMLHGG----IPSTLSNCTY-LRILSLAYNDFSGA  189 (244)
Q Consensus       122 ~~l~~L~~L~l~~~~~~~----~l~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~-L~~L~l~~n~~~~~  189 (244)
                      .....++.+++..|.+..    .++..+-   ....++++|.+.+|.++..    +...+...+. +..+++..|.+-+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            446667777777776631    1112221   2456678888877776521    2223344444 66677777766422


Q ss_pred             ----CCccccCC-CCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCccCc
Q 048688          190 ----VPKDIGNL-TKLMGLYLGRNRLQG----EIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       190 ----~~~~~~~~-~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                          ..+.+... ..++++++..|.+++    .+...+..+++++.+.++.|++..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                22333334 567888888888775    334555677788888888887654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.32  E-value=0.005  Score=45.99  Aligned_cols=83  Identities=17%  Similarity=0.066  Sum_probs=50.8

Q ss_pred             CCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccc-cccCCcccc-CCCCCcEEeeccCc-ccccCCccccCCCCC
Q 048688          124 KSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML-HGGIPSTLS-NCTYLRILSLAYND-FSGAVPKDIGNLTKL  200 (244)
Q Consensus       124 l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~-~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L  200 (244)
                      -..++.++-++..|...-..++ .+++.++.|.+.+|.- .+.--+.++ -.++|+.|++++|+ |+...-..+..+++|
T Consensus       100 ~~~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             cceEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            3457777877777764444455 6677777777776642 111111111 34678888888774 665555566677777


Q ss_pred             CEEEccC
Q 048688          201 MGLYLGR  207 (244)
Q Consensus       201 ~~L~l~~  207 (244)
                      +.|.+.+
T Consensus       179 r~L~l~~  185 (221)
T KOG3864|consen  179 RRLHLYD  185 (221)
T ss_pred             HHHHhcC
Confidence            7777755

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.95  E-value=0.0019  Score=49.41  Aligned_cols=84  Identities=20%  Similarity=0.188  Sum_probs=45.5

Q ss_pred             CCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 048688          148 SLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQM  227 (244)
Q Consensus       148 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  227 (244)
                      .......||++.|+.- .+-..+..++.+..|+++.|.+. ..|..++....+.++++..|..+ ..|.+++..++++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3444555555555443 33334444555555566655554 45555555555555555555554 555566666666666


Q ss_pred             EccCCcc
Q 048688          228 SLAENNL  234 (244)
Q Consensus       228 ~l~~n~l  234 (244)
                      ++-+|++
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            6665553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.26  E-value=0.021  Score=49.07  Aligned_cols=112  Identities=21%  Similarity=0.175  Sum_probs=66.5

Q ss_pred             CCCCCCEEeCCCCCCCCC--CCccccCCCCCcEEEecCC-ccCCCC----CccccCCCCCCEEEccCCC-CCCcCChhhh
Q 048688           75 NLSSLQSLDLSFNRLSGS--IPSAIFTTYTLKDVSFREN-QLTGVF----PSFIFNKSSLQHLDFSRNT-LSGEIPANIC  146 (244)
Q Consensus        75 ~l~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~~~-~~~~l~~~~~  146 (244)
                      .++.|+.+.+..+.-...  .......++.|+.|+++++ ......    ......+++|+.++++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            367777787776533212  2344557788888888763 111111    1233456788888888877 5433333333


Q ss_pred             CCCCCCcEEEccccc-ccc-cCCccccCCCCCcEEeeccCcc
Q 048688          147 SSLPFLDYLYLSKNM-LHG-GIPSTLSNCTYLRILSLAYNDF  186 (244)
Q Consensus       147 ~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~~L~~L~l~~n~~  186 (244)
                      ..+++|++|.+..+. +++ .+-.....++.|++|+++.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            346788888876665 442 2223345677788888887753

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.01  E-value=0.0015  Score=56.02  Aligned_cols=158  Identities=23%  Similarity=0.221  Sum_probs=105.6

Q ss_pred             CCEEeCCCCCCCCC----CCccccCCCCCcEEEecCCccCCCCCc----cccCC-CCCCEEEccCCCCCCc----CChhh
Q 048688           79 LQSLDLSFNRLSGS----IPSAIFTTYTLKDVSFRENQLTGVFPS----FIFNK-SSLQHLDFSRNTLSGE----IPANI  145 (244)
Q Consensus        79 L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~----~~~~l-~~L~~L~l~~~~~~~~----l~~~~  145 (244)
                      +..+.+.+|.+.+.    +...+...+.|+.|++++|.+.+....    .+... ..+++|++..|.+++.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            78889999888743    334556788999999999988743221    22232 5678888888877643    33344


Q ss_pred             hCCCCCCcEEEcccccccc----cCCcccc----CCCCCcEEeeccCccccc----CCccccCCCC-CCEEEccCCcccc
Q 048688          146 CSSLPFLDYLYLSKNMLHG----GIPSTLS----NCTYLRILSLAYNDFSGA----VPKDIGNLTK-LMGLYLGRNRLQG  212 (244)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~----~~~~~l~----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~l~~n~l~~  212 (244)
                       .....++.+++..|.+..    .++..+.    ...++++|.+.+|.++..    +...+...+. +..+++..|.+.+
T Consensus       169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence             346778888888887631    2333333    467899999999887521    1122333344 6679999998875


Q ss_pred             c----CCccccCC-CCCCEEEccCCccCcc
Q 048688          213 E----IPREFGNL-AELEQMSLAENNLQAL  237 (244)
Q Consensus       213 ~----~~~~l~~l-~~L~~L~l~~n~l~~~  237 (244)
                      .    +...+..+ ..+++++++.|.|+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~  277 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEK  277 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence            3    33445566 6789999999998764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.86  E-value=0.038  Score=41.42  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=52.3

Q ss_pred             CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCc-CChhhhCCCCCCcEEEcccc-cccccCCccccCCCCC
Q 048688           99 TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGE-IPANICSSLPFLDYLYLSKN-MLHGGIPSTLSNCTYL  176 (244)
Q Consensus        99 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L  176 (244)
                      .-..++.++-+++.|....-..+..+++++.|.+.++..-+. -...+-.-.++|+.|++++| +|+..--..+..+++|
T Consensus        99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen   99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            344577788777777655445566778888888877753211 11122123578888888877 4554434456667777


Q ss_pred             cEEeecc
Q 048688          177 RILSLAY  183 (244)
Q Consensus       177 ~~L~l~~  183 (244)
                      +.|.+.+
T Consensus       179 r~L~l~~  185 (221)
T KOG3864|consen  179 RRLHLYD  185 (221)
T ss_pred             HHHHhcC
Confidence            7776654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.31  E-value=0.24  Score=23.20  Aligned_cols=17  Identities=24%  Similarity=0.380  Sum_probs=9.4

Q ss_pred             CCCCCEEEccCCccCcc
Q 048688          221 LAELEQMSLAENNLQAL  237 (244)
Q Consensus       221 l~~L~~L~l~~n~l~~~  237 (244)
                      +++|+.|+|++|+|+..
T Consensus         1 ~~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDE   17 (24)
T ss_dssp             -TT-SEEE-TSSBEHHH
T ss_pred             CCCCCEEEccCCcCCHH
Confidence            35677777777776543

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=86.64  E-value=0.23  Score=41.49  Aligned_cols=111  Identities=23%  Similarity=0.236  Sum_probs=57.7

Q ss_pred             CCCCCCEEEccCCCCCCcC-ChhhhCCCCCCcEEEccccccc--ccCCccccCCCCCcEEeeccCc-ccccC----Cccc
Q 048688          123 NKSSLQHLDFSRNTLSGEI-PANICSSLPFLDYLYLSKNMLH--GGIPSTLSNCTYLRILSLAYND-FSGAV----PKDI  194 (244)
Q Consensus       123 ~l~~L~~L~l~~~~~~~~l-~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~-~~~~~----~~~~  194 (244)
                      +.++|+.+.+.++.--+.. ...+-.+.+.|+.+++.++...  +.+...-.+++.|+.+.++++. ++...    ...-
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            4566666666665421111 1122234556666666665432  1222233456777777777664 33221    1112


Q ss_pred             cCCCCCCEEEccCCccc-ccCCccccCCCCCCEEEccCCc
Q 048688          195 GNLTKLMGLYLGRNRLQ-GEIPREFGNLAELEQMSLAENN  233 (244)
Q Consensus       195 ~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~  233 (244)
                      .....+..+-+.+++.. +..-..+..+++|+.+++-+++
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            33455667777777643 2333445667777777776664

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.19  E-value=0.68  Score=22.39  Aligned_cols=17  Identities=24%  Similarity=0.577  Sum_probs=12.0

Q ss_pred             CCCCEEEccCCccCccc
Q 048688          222 AELEQMSLAENNLQALL  238 (244)
Q Consensus       222 ~~L~~L~l~~n~l~~~~  238 (244)
                      .+|+.|+++.|+|+.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            56777778777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.63  E-value=0.011  Score=45.31  Aligned_cols=88  Identities=15%  Similarity=0.073  Sum_probs=62.3

Q ss_pred             cccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCC
Q 048688           96 AIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY  175 (244)
Q Consensus        96 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  175 (244)
                      .+........|+++.|++. ..-..++-+..+..|+++.|.+. .+|.+. .....+..++...|... ..|..++..+.
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccCC
Confidence            4455667777888887765 23334556677778888888886 777766 56666677777666666 67888888888


Q ss_pred             CcEEeeccCccc
Q 048688          176 LRILSLAYNDFS  187 (244)
Q Consensus       176 L~~L~l~~n~~~  187 (244)
                      ++.+++-.+.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            888888777654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.32  E-value=1.2  Score=21.51  Aligned_cols=17  Identities=24%  Similarity=0.515  Sum_probs=11.7

Q ss_pred             CCCCEEEccCCccCccc
Q 048688          222 AELEQMSLAENNLQALL  238 (244)
Q Consensus       222 ~~L~~L~l~~n~l~~~~  238 (244)
                      ++|+.|++++|+++.+.
T Consensus         2 ~~L~~L~vs~N~Lt~LP   18 (26)
T smart00364        2 PSLKELNVSNNQLTSLP   18 (26)
T ss_pred             cccceeecCCCccccCc
Confidence            35677777777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-19
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-12
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		7e-05
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		4e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		5e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		5e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 93/191 (48%), Gaps = 7/191 (3%)
Query: 47  TCDVHSHKVTALNISGLNLTGTIPXXXXXXXXXXXXXXXFNRLSGSIP-SAIFTTYTLKD 105
            CD     +T L++SG +  G +P                N  SG +P   +     LK 
Sbjct: 289 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 106 VSFRENQLTGVFPSFIFNKS-SLQHLDFSRNTLSGEIPANICSSLP-FLDYLYLSKNMLH 163
           +    N+ +G  P  + N S SL  LD S N  SG I  N+C +    L  LYL  N   
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 164 GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223
           G IP TLSNC+ L  L L++N  SG +P  +G+L+KL  L L  N L+GEIP+E   +  
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 224 LEQMSLAENNL 234
           LE + L  N+L
Sbjct: 465 LETLILDFNDL 475

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 93/193 (48%), Gaps = 7/193 (3%)
Query: 47  TCDVHSHKVTALNISGLNLTGTIPXXXXXXXXXXXXXXXFNRLSGSIP-SAIFTTYTLKD 105
            CD     +T L++SG +  G +P                N  SG +P   +     LK 
Sbjct: 292 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 106 VSFRENQLTGVFPSFIFNKS-SLQHLDFSRNTLSGEIPANICSSLP-FLDYLYLSKNMLH 163
           +    N+ +G  P  + N S SL  LD S N  SG I  N+C +    L  LYL  N   
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 164 GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223
           G IP TLSNC+ L  L L++N  SG +P  +G+L+KL  L L  N L+GEIP+E   +  
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 224 LEQMSLAENNLQA 236
           LE + L  N+L  
Sbjct: 468 LETLILDFNDLTG 480

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 59/255 (23%)
Query: 11  DQDALLALKAHITHDPTNFLAKNWNTSAPVCN--WTGVTCDV--HSHKVTALNISGLNL- 65
           D+ ALL +K  +  +PT     +W  +   CN  W GV CD    +++V  L++SGLNL 
Sbjct: 7   DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 66  --------------------------TGTIPXXXXXXXXXXXXXXXFNRLSGSIPSAIFT 99
                                      G IP                  +SG+IP  +  
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 100 TYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK 159
             TL  + F  N L+G  P  I +  +L  + F  N +SG IP +  S       + +S+
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 160 NMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFG 219
           N L G IP T +N      L+LA+ D S                   RN L+G+    FG
Sbjct: 184 NRLTGKIPPTFAN------LNLAFVDLS-------------------RNMLEGDASVLFG 218
Query: 220 NLAELEQMSLAENNL 234
           +    +++ LA+N+L
Sbjct: 219 SDKNTQKIHLAKNSL 233

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 87  NRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPAN 144
           N+LS S+PS  F   T L+ +   +N+L    P+ IF +  +L+ L  + N L   +P  
Sbjct: 47  NKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIG 103
Query: 145 ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGL 203
           +   L  L  L L +N L    P    + T L  LSL YN+   ++PK +   LT L  L
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162
Query: 204 YLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
            L  N+L+      F  L EL+ + L  N L+
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 87  NRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPAN 144
           NRL+ +IP+  F   + LK++  R N +  + PS+ FN+  SL+ LD         I   
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 145 ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204
               L  L YL L+   L   IP+ L+    L  L L+ N  S   P     L  L  L+
Sbjct: 180 AFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
           + ++++Q      F NL  L +++LA NNL  L    F P
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 87  NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK--SSLQHLDFSRNTLSGEIPAN 144
           N  + S+     T   L+ +  + N L   F   +  K  SSL+ LD S N+L+      
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422
Query: 145 ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204
            C+    +  L LS NML G +   L     +++L L +N+   ++PKD+ +L  L  L 
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQALQELN 479
Query: 205 LGRNRLQGEIPREFGNLAELEQMSLAEN 232
           +  N+L+      F  L  L+ + L +N
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 91  GSIPSAIFTTYTL-KDVSFREN-QLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSS 148
             I +A FT   L + +   +N QL  V P+       L  L   R  L  E+   +   
Sbjct: 68  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 126
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
           L  L YLYL  N L      T  +   L  L L  N  S    +    L  L  L L +N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 209 RLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
           R+    P  F +L  L  + L  NNL AL   +  P
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 222

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 91  GSIPSAIFTTYTL-KDVSFREN-QLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSS 148
             I +A FT   L + +   +N QL  V P+       L  L   R  L  E+   +   
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 127
Query: 149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
           L  L YLYL  N L      T  +   L  L L  N  S    +    L  L  L L +N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 209 RLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
           R+    P  F +L  L  + L  NNL AL   +  P
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 155 LYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI 214
           LYL  N     +P  LSN  +L ++ L+ N  S    +   N+T+L+ L L  NRL+   
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 215 PREFGNLAELEQMSLAENNLQAL 237
           PR F  L  L  +SL  N++  +
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVV 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  198 bits (505), Expect = 8e-63
 Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 36/256 (14%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCN--WTGVTCDV--HSHKVTALNISGLNL 65
            D+ ALL +K  +  +PT     +W  +   CN  W GV CD    +++V  L++SGLNL
Sbjct: 6   QDKQALLQIKKDLG-NPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 66  ---------------------------TGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIF 98
                                       G IP  +  L+ L  L ++   +SG+IP  + 
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 99  TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158
              TL  + F  N L+G  P  I +  +L  + F  N +SG IP +  S       + +S
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF 218
           +N L G IP T +N   L  + L+ N   G      G+      ++L +N L  ++  + 
Sbjct: 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KV 240

Query: 219 GNLAELEQMSLAENNL 234
           G    L  + L  N +
Sbjct: 241 GLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  161 bits (409), Expect = 2e-48
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 5/179 (2%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVSFRENQLT 114
             L+ S   L+GT+P  + +L +L  +    NR+SG+IP +  + +     ++   N+LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
           G  P    N  +L  +D SRN L G+       S      ++L+KN L   +   +    
Sbjct: 188 GKIPPTFAN-LNLAFVDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VGLSK 244

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
            L  L L  N   G +P+ +  L  L  L +  N L GEIP+  GNL   +  + A N 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  114 bits (288), Expect = 1e-30
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 28/161 (17%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
            T++ IS   LTG IP    NL +L  +DLS N L G                       
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL------------------ 216

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
                   +  + Q +  ++N+L+ ++          L+ L L  N ++G +P  L+   
Sbjct: 217 ------FGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP 215
           +L  L++++N+  G +P+  GNL +        N+     P
Sbjct: 269 FLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.7 bits (226), Expect = 8e-22
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG--GIPSTLSNCTYLRILSLA-YNDF 186
            D    T  G +     +    ++ L LS   L     IPS+L+N  YL  L +   N+ 
Sbjct: 31  TDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
            G +P  I  LT+L  LY+    + G IP     +  L  +  + N L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  188 bits (480), Expect = 2e-55
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 17/236 (7%)

Query: 8   ITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLT- 66
           +  +   L++ K  +     N L  +W+++   C + GVTC     KVT++++S   L  
Sbjct: 10  LYREIHQLISFKDVL--PDKNLLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNV 64

Query: 67  --GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSF--IF 122
               + S L +L+ L+SL LS + ++GS+      + +L  +    N L+G   +   + 
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLG 123

Query: 123 NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL---SNCTYLRIL 179
           + S L+ L+ S NTL      +    L  L+ L LS N + G           C  L+ L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 180 SLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           +++ N  SG V   +     L  L +  N     IP   G+ + L+ + ++ N L 
Sbjct: 184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (460), Expect = 1e-52
 Identities = 72/183 (39%), Positives = 98/183 (53%), Gaps = 3/183 (1%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLT 114
           T L++SG +  G +P   G+ S L+SL LS N  SG +P         LK +    N+ +
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 115 GVFPSFIFN-KSSLQHLDFSRNTLSGEIPANIC-SSLPFLDYLYLSKNMLHGGIPSTLSN 172
           G  P  + N  +SL  LD S N  SG I  N+C +    L  LYL  N   G IP TLSN
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 173 CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
           C+ L  L L++N  SG +P  +G+L+KL  L L  N L+GEIP+E   +  LE + L  N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 233 NLQ 235
           +L 
Sbjct: 477 DLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  175 bits (447), Expect = 7e-51
 Identities = 66/186 (35%), Positives = 94/186 (50%), Gaps = 5/186 (2%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE 110
               +  L++S  N +  IP  LG+ S+LQ LD+S N+LSG    AI T   LK ++   
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           NQ  G  P       SLQ+L  + N  +GEIP  +  +   L  L LS N  +G +P   
Sbjct: 257 NQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 171 SNCTYLRILSLAYNDFSGAVPKD-IGNLTKLMGLYLGRNRLQGEIPREFGNL-AELEQMS 228
            +C+ L  L+L+ N+FSG +P D +  +  L  L L  N   GE+P    NL A L  + 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 229 LAENNL 234
           L+ NN 
Sbjct: 375 LSSNNF 380

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  174 bits (444), Expect = 2e-50
 Identities = 66/185 (35%), Positives = 88/185 (47%), Gaps = 3/185 (1%)

Query: 52  SHKVTALNISGLNLTGTIPSQLGN--LSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR 109
           S  +  L++S  N +G I   L     ++LQ L L  N  +G IP  +     L  +   
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
            N L+G  PS + + S L+ L    N L GEIP  +   +  L+ L L  N L G IPS 
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSG 485

Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
           LSNCT L  +SL+ N  +G +PK IG L  L  L L  N   G IP E G+   L  + L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 230 AENNL 234
             N  
Sbjct: 546 NTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  168 bits (427), Expect = 4e-48
 Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 5/180 (2%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
            +L++S   L+GTIPS LG+LS L+ L L  N L G IP  +    TL+ +    N LTG
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
             PS + N ++L  +  S N L+GEIP  I   L  L  L LS N   G IP+ L +C  
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRS 539

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L  L L  N F+G +P  +   +  +      N + G+      N    ++   A N L+
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAA----NFIAGKRYVYIKNDGMKKECHGAGNLLE 595

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  167 bits (424), Expect = 1e-47
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 1/177 (0%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L +     TG IP  L N S L SL LSFN LSG+IPS++ +   L+D+    N L G  
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR 177
           P  +    +L+ L    N L+GEIP+ + S+   L+++ LS N L G IP  +     L 
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 178 ILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           IL L+ N FSG +P ++G+   L+ L L  N   G IP      +     +      
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  165 bits (421), Expect = 2e-47
 Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 4/192 (2%)

Query: 56  TALNISGLNLTGTIPSQL-GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
             L+++    TG IP  L G   +L  LDLS N   G++P    +   L+ ++   N  +
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 115 GVFP-SFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           G  P   +     L+ LD S N  SGE+P ++ +    L  L LS N   G I   L   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 174 --TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAE 231
               L+ L L  N F+G +P  + N ++L+ L+L  N L G IP   G+L++L  + L  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 232 NNLQALLLYSFM 243
           N L+  +    M
Sbjct: 452 NMLEGEIPQELM 463

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  160 bits (406), Expect = 3e-45
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 10/187 (5%)

Query: 53  HKVTALNISGLNLTGTIPSQL---GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR 109
           + +  L++S  +++G              L+ L +S N++SG +  +      L+ +   
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN--LEFLDVS 208

Query: 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
            N  +   P  + + S+LQHLD S N LSG+    I S+   L  L +S N   G IP  
Sbjct: 209 SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPP- 265

Query: 170 LSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMS 228
                 L+ LSLA N F+G +P  + G    L GL L  N   G +P  FG+ + LE ++
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 229 LAENNLQ 235
           L+ NN  
Sbjct: 325 LSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  152 bits (386), Expect = 2e-42
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 7/179 (3%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L +S  + +G IP++LG+  SL  LDL+ N  +G+IP+A+F            N + G  
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKR 574

Query: 118 PSFIFNKSSLQHLDFSRNT--LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
             +I N    +    + N     G     +   L   +   ++  +  G    T  N   
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           +  L ++YN  SG +PK+IG++  L  L LG N + G IP E G+L  L  + L+ N L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  144 bits (365), Expect = 1e-39
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLK--DVSFRENQLTG 115
           L+++     GTIP+ +   S      ++ N ++G     I      K    +    +  G
Sbjct: 543 LDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +    +   S+    + +     G        +   + +L +S NML G IP  + +  Y
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L IL+L +ND SG++P ++G+L  L  L L  N+L G IP+    L  L ++ L+ NNL 
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (317), Expect = 4e-33
 Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 3/161 (1%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFN--RLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             I+   + G     + N    +    + N     G     +    T    +       G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
                  N  S+  LD S N LSG IP  I  S+P+L  L L  N + G IP  + +   
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPR 216
           L IL L+ N   G +P+ +  LT L  + L  N L G IP 
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (274), Expect = 2e-27
 Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 25/138 (18%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
                NI+     G       N  S+  LD+S+N LSG IP                   
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE----------------- 651

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
                  I +   L  L+   N +SG IP  +   L  L+ L LS N L G IP  +S  
Sbjct: 652 -------IGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 174 TYLRILSLAYNDFSGAVP 191
           T L  + L+ N+ SG +P
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 87.7 bits (218), Expect = 5e-20
 Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 25/116 (21%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +  L++S   L+G IP ++G++  L  L+L  N +SGSIP  +               L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-------------GDL 679

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
                        L  LD S N L G IP  + S+L  L  + LS N L G IP  
Sbjct: 680 R-----------GLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 25/100 (25%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             LN+   +++G+IP ++G+L  L  LDLS N+L G I                      
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI---------------------- 696

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPA-NICSSLPFLDY 154
             P  +   + L  +D S N LSG IP      + P   +
Sbjct: 697 --PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  126 bits (318), Expect = 1e-33
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLS--GSIPSAIFTTYTLKDVSFRENQLTG 115
             ++  +  G       +L SL+ LDLS N LS  G    + F T +LK +    N +  
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +  +F      L+HLDF  + L      ++  SL  L YL +S            +  + 
Sbjct: 388 MSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 176 LRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           L +L +A N F      DI   L  L  L L + +L+   P  F +L+ L+ ++++ NN 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 235 QALLLYSF 242
            +L  + +
Sbjct: 507 FSLDTFPY 514

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (307), Expect = 4e-32
 Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 6/228 (2%)

Query: 21  HITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISG--LNLTGTIPSQLGNLSS 78
                PT  L      +           +V    +  L++S   L+  G         +S
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 79  LQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTL 137
           L+ LDLSFN +   + S       L+ + F+ + L  +    +F    +L +LD S    
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 138 SGEIPANICSSLPFLDYLYLSKNMLHGGI-PSTLSNCTYLRILSLAYNDFSGAVPKDIGN 196
                  I + L  L+ L ++ N       P   +    L  L L+        P    +
Sbjct: 434 RVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 197 LTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
           L+ L  L +  N         +  L  L+ +  + N++          
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (300), Expect = 5e-31
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 3/180 (1%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGV 116
           L++S   +  T+ S    L  L+ LD   + L      ++F +   L  +          
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 117 FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYL 176
           F       SSL+ L  + N+       +I + L  L +L LS+  L    P+  ++ + L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 177 RILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE-LEQMSLAENNLQ 235
           ++L++++N+F          L  L  L    N +     +E  +    L  ++L +N+  
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (299), Expect = 7e-31
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 7/193 (3%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
              L++S   L         +   LQ LDLS   +      A  +   L  +    N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG-IPSTLSNC 173
            +        SSLQ L      L+      I   L  L  L ++ N++    +P   SN 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKL----MGLYLGRNRLQGEIPREFGNLAELEQMSL 229
           T L  L L+ N        D+  L ++    + L L  N +    P  F  +  L +++L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTL 207

Query: 230 AENNLQALLLYSF 242
             N     ++ + 
Sbjct: 208 RNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (280), Expect = 2e-28
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 6/183 (3%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L++S   +         +LS L +L L+ N +      A     +L+ +   E  L  + 
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR 177
              I +  +L+ L+ + N +         S+L  L++L LS N +     + L     + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 178 I----LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAEN 232
           +    L L+ N  +  +        +L  L L  N     + +     LA LE   L   
Sbjct: 177 LLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 233 NLQ 235
             +
Sbjct: 236 EFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (267), Expect = 1e-26
 Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 9/189 (4%)

Query: 59  NISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP 118
               LN    IP  L    S ++LDLSFN L      + F+   L+ +     ++  +  
Sbjct: 13  QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 119 SFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI 178
               + S L  L  + N +         S L  L  L   +  L       + +   L+ 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 179 LSLAYNDF-SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQM----SLAENN 233
           L++A+N   S  +P+   NLT L  L L  N++Q     +   L ++  +     L+ N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 234 LQALLLYSF 242
           +  +   +F
Sbjct: 189 MNFIQPGAF 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (264), Expect = 3e-26
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 4/168 (2%)

Query: 51  HSHKVTALNISGLNLTGTIP-SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR 109
              ++  L+    NL      S   +L +L  LD+S      +         +L+ +   
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 110 ENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS 168
            N     F   IF +  +L  LD S+  L    P    +SL  L  L +S N        
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTF 512

Query: 169 TLSNCTYLRILSLAYNDFSGAVPKDIGNL-TKLMGLYLGRNRLQGEIP 215
                  L++L  + N    +  +++ +  + L  L L +N       
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 17/208 (8%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRL-SGSIPSAIFTTYTLKDVSFR 109
               +  L     NL       +G+L +L+ L+++ N + S  +P        L+ +   
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 110 ENQLTGVFPSFIFNKSSLQ----HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG 165
            N++  ++ + +     +      LD S N ++   P         L  L L  N     
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLN 215

Query: 166 IPST-LSNCTYLRILSLAYNDFSGA---VPKDIGNLTKLMGLYLGRNRLQ------GEIP 215
           +  T +     L +  L   +F         D   L  L  L +   RL        +I 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 216 REFGNLAELEQMSLAENNLQALLLYSFM 243
             F  L  +   SL    ++ +  +S+ 
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYN 303

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 3/143 (2%)

Query: 58  LNISGLNLTGTI-PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV 116
           L ++G +      P     L +L  LDLS  +L    P+A  +  +L+ ++   N    +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 117 FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST--LSNCT 174
                   +SLQ LD+S N +       +      L +L L++N           L    
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

Query: 175 YLRILSLAYNDFSGAVPKDIGNL 197
             R L +       A P D   +
Sbjct: 570 DQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 4/134 (2%)

Query: 106 VSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG 165
               E     + P  +    S ++LD S N L      +   S P L  L LS+  +   
Sbjct: 12  YQCMELNFYKI-PDNLP--FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTI 67

Query: 166 IPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELE 225
                 + ++L  L L  N            L+ L  L      L        G+L  L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 226 QMSLAENNLQALLL 239
           ++++A N +Q+  L
Sbjct: 128 ELNVAHNLIQSFKL 141

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 33/219 (15%), Positives = 57/219 (26%), Gaps = 41/219 (18%)

Query: 58  LNISGLNLTGT-IPSQLGNLSSLQSLDLSFNRLSGSIPSAIF----TTYTLKDVSFRENQ 112
           LN++   +    +P    NL++L+ LDLS N++     + +            +    N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML---------- 162
           +  + P   F +  L  L    N  S  +       L  L+   L               
Sbjct: 189 MNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 163 -----------------------HGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTK 199
                                     I    +  T +   SL          KD      
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFG 305

Query: 200 LMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
              L L   +       +  +L  L   S    N  + +
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 29/217 (13%)

Query: 54  KVTALNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFTTYT---LKDVSFR 109
           ++  L +     +  +    +  L+ L+   L             F       L +++  
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 110 ENQLT------GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYL-------- 155
           E +L                 +++        T+      +       L+ +        
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 156 --------YLSKNMLHGGIPSTLSNCTYLRILSLAYND--FSGAVPKDIGNLTKLMGLYL 205
                    L+     GG   +  +   L  L L+ N   F G   +     T L  L L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 206 GRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
             N +   +   F  L +LE +    +NL+ +  +S 
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (315), Expect = 5e-33
 Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 3/190 (1%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
           +T LN++   L     +     S L SLD+ FN +S   P        LK ++ + N+L+
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
            +        ++L  L    N++   I  N       L  L LS N L      T     
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 175 YLRILSLAYNDFSGAVPKDIG--NLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
            L+ L L+ N       +++     + L  L L  N+++   P  F  +  L  + L   
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 233 NLQALLLYSF 242
            L   L    
Sbjct: 206 QLGPSLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  119 bits (301), Expect = 4e-31
 Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 6/194 (3%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAI--FTTYTLKDVSF 108
               +  L++S   L+ T       L +LQ L LS N++       +  F   +LK +  
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 109 RENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICS--SLPFLDYLYLSKNMLHGGI 166
             NQ+    P        L  L  +   L   +   +C   +   +  L LS + L    
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 167 PSTLSNC--TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
            +T      T L +L L+YN+ +         L +L   +L  N +Q         L  +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 225 EQMSLAENNLQALL 238
             ++L  +  +  +
Sbjct: 299 RYLNLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  118 bits (297), Expect = 2e-30
 Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 6/196 (3%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ 112
             +  LN+    L+          ++L  L L  N +     +       L  +    N 
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICS-SLPFLDYLYLSKNMLHGGIPSTLS 171
           L+           +LQ L  S N +       +   +   L  L LS N +    P    
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 172 NCTYLRILSLAYNDFSGAVPKDIG---NLTKLMGLYLGRNRLQGEIPREFGNLA--ELEQ 226
               L  L L       ++ + +      T +  L L  ++L       F  L    L  
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 227 MSLAENNLQALLLYSF 242
           + L+ NNL  +   SF
Sbjct: 253 LDLSYNNLNVVGNDSF 268

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (295), Expect = 2e-30
 Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 6/186 (3%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLS-GSIPSAIF---TTYTLKDVSFRENQL 113
           LN+   ++ G   +    L +L+ L LS +  S  ++ +  F       L  ++  +N++
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           + +          L+ LD   N +  E+       L  +  +YLS N       ++ +  
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 174 TYLRILSLAYNDFSG--AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAE 231
             L+ L L         + P     L  L  L L  N +          L +LE + L  
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 232 NNLQAL 237
           NNL  L
Sbjct: 514 NNLARL 519

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (294), Expect = 4e-30
 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 12/198 (6%)

Query: 58  LNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV 116
           L++    +   +  Q    L ++  + LS+N+      ++     +L+ +  R   L  V
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 117 --FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH--------GGI 166
              PS      +L  LD S N ++  I  ++   L  L+ L L  N L         GG 
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 167 PSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQ 226
              L   ++L IL+L  N F     +   +L +L  + LG N L       F N   L+ 
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 227 MSLAENNLQALLLYSFMP 244
           ++L +N + ++    F P
Sbjct: 589 LNLQKNLITSVEKKVFGP 606

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (286), Expect = 4e-29
 Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 15/198 (7%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT---LKDVSFRENQLT 114
           L +S   +    P     +  L  L L+  +L  S+   +        ++++S   +QL+
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 115 GVFPSFIFN--KSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSN 172
               +       ++L  LD S N L+  +  +  + LP L+Y +L  N +      +L  
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 173 CTYLRILSLAYNDFSGAV---------PKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223
              +R L+L  +    ++               L  L  L +  N + G     F  L  
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 224 LEQMSLAENNLQALLLYS 241
           L+ +SL+ +      L +
Sbjct: 355 LKYLSLSNSFTSLRTLTN 372

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (282), Expect = 1e-28
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 8/193 (4%)

Query: 52  SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111
               T  +IS  +L          L  L+ L++  N + G   +       LK +S   +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 112 QLTGV-FPSFIF---NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP 167
             +     +  F     S L  L+ ++N +S  I ++  S L  L+ L L  N +   + 
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 168 -STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG--EIPREFGNLAEL 224
                    +  + L+YN +          +  L  L L R  L+     P  F  L  L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 225 EQMSLAENNLQAL 237
             + L+ NN+  +
Sbjct: 483 TILDLSNNNIANI 495

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  111 bits (279), Expect = 4e-28
 Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 14/195 (7%)

Query: 54  KVTALNISGLNLTGTIPSQLGNL--SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111
            +  L++S   L+ T  +    L  ++L  LDLS+N L+     +      L+      N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 112 QLTGVFPSFIFNKSSLQHLDFSRNTLSG--------EIPANICSSLPFLDYLYLSKNMLH 163
            +  +F   +    ++++L+  R+            +I       L  L++L +  N + 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 164 GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG----NLTKLMGLYLGRNRLQGEIPREFG 219
           G   +  +    L+ LSL+ +  S     +        + L  L L +N++       F 
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 220 NLAELEQMSLAENNL 234
            L  LE + L  N +
Sbjct: 403 WLGHLEVLDLGLNEI 417

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (276), Expect = 1e-27
 Identities = 43/165 (26%), Positives = 63/165 (38%), Gaps = 4/165 (2%)

Query: 78  SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTL 137
           S +  D S  +L+  +P  + T   +  ++   NQL  +  +     S L  LD   NT+
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPTN--ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 138 SGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNL 197
           S  +   +C  LP L  L L  N L      T + CT L  L L  N             
Sbjct: 62  SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
             L+ L L  N L          L  L+++ L+ N +QAL     
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (275), Expect = 1e-27
 Identities = 36/193 (18%), Positives = 58/193 (30%), Gaps = 10/193 (5%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG--SIPSAIFTTYTLKDVSFRE 110
             +  + +S         +    + SLQ L L    L    S PS       L  +    
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLS-------GEIPANICSSLPFLDYLYLSKNMLH 163
           N +  +    +     L+ LD   N L+          P      L  L  L L  N   
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 164 GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFG-NLA 222
                   +   L+I+ L  N+ +        N   L  L L +N +     + FG    
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 223 ELEQMSLAENNLQ 235
            L ++ +  N   
Sbjct: 610 NLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.9 bits (234), Expect = 4e-22
 Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 12/174 (6%)

Query: 53  HKVTALNISGLNLTG--TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE 110
             +  L +  + L    + PS    L +L  LDLS N ++      +     L+ +  + 
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 111 NQLT--------GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML 162
           N L         G    F+   S L  L+   N     IP  +   L  L  + L  N L
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNL 572

Query: 163 HGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG-NLTKLMGLYLGRNRLQGEIP 215
           +    S  +N   L+ L+L  N  +    K  G     L  L +  N       
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.5 bits (194), Expect = 6e-17
 Identities = 23/132 (17%), Positives = 39/132 (29%)

Query: 59  NISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP 118
            +      G     L  LS L  L+L  N             + LK +    N L  +  
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 119 SFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI 178
           S   N+ SL+ L+  +N ++         +   L  L +  N       S      ++  
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637

Query: 179 LSLAYNDFSGAV 190
                 + S   
Sbjct: 638 THTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFR 109
              ++  +++   NL     S   N  SL+SL+L  N ++          +  L ++  R
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152
            N       S  +  + +     +   LS      +C++ P  
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHY---LCNTPPHY 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (310), Expect = 2e-32
 Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 40/265 (15%)

Query: 10  TDQDALLALKAHITHDPTNF---------LAKNWNTSAPVCNW---TGVTCDVHSHKVTA 57
            D  AL A+   +      +          + NWN +  +  W    GV  D ++ +VT 
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLD-NNGRVTG 327

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L+++G    G +P  +G L+ L+ L    +  + S         T      R++++   +
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 118 PS-FIFNKSSLQHLDFSRNTLS-----GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS 171
              F+     L   D  ++ ++       I  +   SL       L+ N +   I   + 
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRITF-ISKAIQ 445

Query: 172 NCTYLRILSLAYNDFSG-------------------AVPKDIGNLTKLMGLYLGRNRLQG 212
             T L+I+  A + F+                           NL  L  + L       
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 213 EIPREFGNLAELEQMSLAENNLQAL 237
           ++P    +L EL+ +++A N   + 
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISA 530

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  107 bits (268), Expect = 1e-26
 Identities = 28/199 (14%), Positives = 54/199 (27%), Gaps = 16/199 (8%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV- 116
            N               NL  L  ++L        +P  ++    L+ ++   N+     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 117 --------FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS 168
                             +Q      N L     +     +  L  L    N +      
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE 589

Query: 169 TLSNCTYLRILSLAYNDFSGAVPKDIG-NLTKLMGLYLGRNRLQGEIPR--EFGNLAELE 225
                  L  L L YN     +P+D      ++ GL    N+L+  IP      ++  + 
Sbjct: 590 AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647

Query: 226 QMSLAENNLQALLLYSFMP 244
            +  + N + +        
Sbjct: 648 SVDFSYNKIGSEGRNISCS 666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (250), Expect = 3e-24
 Identities = 34/195 (17%), Positives = 59/195 (30%), Gaps = 15/195 (7%)

Query: 56  TALNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
               +   NL     S  L  +  L  LD   N++      A  T   L D+    NQ+ 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE 608

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-----GIPST 169
            +   F      ++ L FS N L          S+  +  +  S N +            
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ-------GEIPREFGNLA 222
                    ++L+YN+      +     + +  + L  N +              + N  
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 223 ELEQMSLAENNLQAL 237
            L  + L  N L +L
Sbjct: 729 LLTTIDLRFNKLTSL 743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.2 bits (247), Expect = 6e-24
 Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 17/195 (8%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLS-------GSIPSAIFTTYTLKDVSF 108
           + + +S   +           S + ++ LS N ++                TY L  +  
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 109 RENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICS-----SLPFLDYLYLSKNML 162
           R N+LT +   F       L ++D S N  S   P    +     +           N +
Sbjct: 736 RFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRI 794

Query: 163 HGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLA 222
               P+ ++ C  L  L +  ND    V + +    +L  L +  N              
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYI 851

Query: 223 ELEQMSLAENNLQAL 237
           E     L  +  Q +
Sbjct: 852 EAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 160 NMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFG 219
           +M        L N   +  LSLA     G VP  IG LT+L  L  G +       R FG
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFG 367

Query: 220 NLAELEQMSLAENNLQALLLYS 241
           +      MS    +   +    
Sbjct: 368 DEELTPDMSEERKHRIRMHYKK 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (299), Expect = 8e-31
 Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 16/197 (8%)

Query: 56  TALNISGLNL-TGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
             + I   NL T  + + L  +  L  L+  +N+L G +P+   +   L  ++   NQ+T
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT 366

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-------GIP 167
            +  +F      +++L F+ N L          S+  +  +  S N +          + 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG-------EIPREFGN 220
            T      +  ++L+ N  S    +     + L  + L  N L         +    F N
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 221 LAELEQMSLAENNLQAL 237
              L  + L  N L  L
Sbjct: 487 TYLLTSIDLRFNKLTKL 503

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (299), Expect = 8e-31
 Identities = 27/238 (11%), Positives = 58/238 (24%), Gaps = 41/238 (17%)

Query: 33  NWNTSAPVCNWT---GVTCDVHSHKVTALNISGLNLTGTIPSQ----------------- 72
           NWN +  +  W    GV+ + +   VT L++ G   +G +P                   
Sbjct: 59  NWNFNKELDMWGAQPGVSLNSNGR-VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117

Query: 73  -----------LGNLSSLQSLDLSFNRLSGSIPSAIFTTYT--LKDVSFRENQLTGVFPS 119
                      +    S +           +            L       +        
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 120 FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRIL 179
                     +    N ++  +   +   L  L   Y+  +                   
Sbjct: 178 SSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWEN-----E 230

Query: 180 SLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
           +  Y            NL  L  + +       ++P     L E++ +++A N   + 
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  114 bits (287), Expect = 3e-29
 Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 26/210 (12%)

Query: 56  TALNISGLNLTG-------TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSF 108
           +A++ S   +          +        ++ S++LS N++S        T   L  ++ 
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 109 RENQLTGV-------FPSFIFNKSSLQHLDFSRNTLSGEIPANIC-SSLPFLDYLYLSKN 160
             N LT +             N   L  +D   N L+  +  +   ++LP+L  + LS N
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 161 MLHGGIPSTLSNCTYLRILSL------AYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI 214
                 P+   N + L+   +        N      P+ I     L  L +G N ++  +
Sbjct: 524 SF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-V 581

Query: 215 PREFGNLAELEQMSLAENNLQALLLYSFMP 244
             +      +  + + +N   ++ L    P
Sbjct: 582 NEKI--TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (284), Expect = 7e-29
 Identities = 31/198 (15%), Positives = 71/198 (35%), Gaps = 14/198 (7%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV- 116
            N        T   +  NL  L  +++        +P+ +     ++ ++   N+     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 117 -------FPSFIFNKSSLQHLDFSRNTL-SGEIPANICSSLPFLDYLYLSKNMLHGGIPS 168
                    +       +Q +    N L +  +  ++   +  L  L    N L G +P+
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLPA 348

Query: 169 TLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPR--EFGNLAELEQ 226
              +   L  L+LAYN  +       G   ++  L    N+L+  IP   +  +++ +  
Sbjct: 349 -FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406

Query: 227 MSLAENNLQALLLYSFMP 244
           +  + N + ++   +F P
Sbjct: 407 IDFSYNEIGSVDGKNFDP 424

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (279), Expect = 3e-28
 Identities = 37/195 (18%), Positives = 60/195 (30%), Gaps = 17/195 (8%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG-------SIPSAIFTTYTLKDV 106
            V+++N+S   ++          S L S++L  N L+                TY L  +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 107 SFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICS-----SLPFLDYLYLSKN 160
             R N+LT +   F       L  +D S N+ S   P    +          +      N
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552

Query: 161 MLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGN 220
                 P  ++ C  L  L +  ND    V + I     +  L +  N            
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

Query: 221 LAELEQMSLAENNLQ 235
             E     L  +  Q
Sbjct: 610 YIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  104 bits (261), Expect = 1e-25
 Identities = 21/194 (10%), Positives = 55/194 (28%), Gaps = 16/194 (8%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +    I+      +I            +    N ++  +  A+     L+      +  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPF 218

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
                   +   + ++                  +L  L  + +        +P+ L   
Sbjct: 219 VAENICEAWENENSEY-----AQQYKTEDLKW-DNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 174 TYLRILSLAYNDF--------SGAVPKDIGNLTKLMGLYLGRNRLQ-GEIPREFGNLAEL 224
             ++++++A N                D     K+  +Y+G N L+   +      + +L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 225 EQMSLAENNLQALL 238
             +    N L+  L
Sbjct: 333 GMLECLYNQLEGKL 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 53  HKVTALNISGLNLTGTIPS-QLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE- 110
           + +T++++    LT      +   L  L  +DLS+N  S   P+    + TLK    R  
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

Query: 111 -----NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG 165
                N+    +P  I    SL  L    N +   +   I  ++     L +  N     
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNI---SVLDIKDNPNISI 602

Query: 166 IPSTLSNCTYLRILSLAYN 184
             S +       +  L Y+
Sbjct: 603 DLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 160 NMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG----EIP 215
           +M       +L++   +  LSL     SG VP  IG LT+L  L LG +  +       P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 216 REFGNLAELEQMSLAENNLQALLL 239
           +        EQ      + Q   +
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFV 150

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 194 IGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
           + +  ++ GL L      G +P   G L ELE ++L  +  +       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (291), Expect = 7e-30
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 4/186 (2%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
           V ++N+          +     S LQ LDL+   LS  +PS +    TLK +    N+  
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH--GGIPSTLSN 172
            +      N  SL HL    NT   E+      +L  L  L LS + +         L N
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 173 CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAE 231
            ++L+ L+L+YN+      +      +L  L L   RL+ +  +  F NL  L+ ++L+ 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 232 NNLQAL 237
           + L   
Sbjct: 435 SLLDIS 440

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (265), Expect = 2e-26
 Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 4/181 (2%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGV 116
           LN+S                 L+ LDL+F RL      + F     LK ++   + L   
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 117 FPSFIFNKSSLQHLDFSRNTLSG--EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
                    +LQHL+   N          N   +L  L+ L LS   L        ++  
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
            +  + L++N  + +  + + +L  +  L L  N +   +P     L++   ++L +N L
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 235 Q 235
            
Sbjct: 560 D 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (257), Expect = 3e-25
 Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 8/191 (4%)

Query: 58  LNISG--LNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
           L++S   +  +     QL NLS LQSL+LS+N        A      L+ +     +L  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 116 VFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI---PSTLS 171
                 F     L+ L+ S + L       +   LP L +L L  N    G     ++L 
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 172 NCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAE 231
               L IL L++ D S        +L  +  + L  NRL         +L  +  ++LA 
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532

Query: 232 NNLQALLLYSF 242
           N++  +L    
Sbjct: 533 NHISIILPSLL 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.2 bits (245), Expect = 1e-23
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 4/165 (2%)

Query: 80  QSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSG 139
           ++ +     L+  IP  +  +   + + F  N L  +  +      +L  LD +R  +  
Sbjct: 15  KTYNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 140 EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTK 199
            I  +   S   LD L L+ N L     + LS    L+ L       S      + N   
Sbjct: 72  -IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 200 LMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
           L  LYLG N +      +     +L+ +    N +  L       
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.8 bits (244), Expect = 1e-23
 Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 9/194 (4%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQ--SLDLSFNRLSGSIPSAIFTTYTLKDVSF 108
            + K+  L+     +       + +L      SL+L+ N ++  I    F +   + ++F
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNF 209

Query: 109 RENQLTGVFPSFIFNKS--SLQHLDFSRNTLSGEIPANICSSLPFLD--YLYLSKNMLHG 164
              Q   V    + N +  SL    F       +I   +   L  +    + L K+    
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
              +T    + L+ L L     S  +P  +  L+ L  L L  N+ +        N   L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 225 EQMSLAENNLQALL 238
             +S+  N  +  L
Sbjct: 328 THLSIKGNTKRLEL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.1 bits (224), Expect = 7e-21
 Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 29/218 (13%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ 112
             +  L      ++      L N  +L+SL L  N +S       F T  LK + F+ N 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 113 LTGV-------------------------FPSFIFNKSSLQHLDFSRNTLSGEIPANIC- 146
           +  +                              F+ +  Q L+F        I   +  
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 147 SSLPFLDYLYLSKNMLHGGIPSTLSNC--TYLRILSLAYNDFSGAVPKDIGNLTKLMGLY 204
           S++  L              P+         +  ++L  + F           + L  L 
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 205 LGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
           L    L  E+P     L+ L+++ L+ N  + L   S 
Sbjct: 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 9/185 (4%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSI---PSAIFTTYTLKDVSFR 109
           H +  LN+S   L  +       L +LQ L+L  N          +++ T   L+ +   
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
              L+ +      +   + H+D S N L+        S L  + YL L+ N +   +PS 
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILPSL 542

Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
           L   +  R ++L  N           N+  L        +L+        N   L  + L
Sbjct: 543 LPILSQQRTINLRQNPLDC----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRL 598

Query: 230 AENNL 234
           ++  L
Sbjct: 599 SDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L +S  +L+        +L  +  +DLS NRL+ S      +      ++   N ++ + 
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLASNHISIIL 539

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR 177
           PS +   S  + ++  +N L        CS++ FL++   +   L     +   N   LR
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC-----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLR 594

Query: 178 ILSLAYNDFS 187
            + L+    S
Sbjct: 595 GVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (277), Expect = 5e-28
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 2/178 (1%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGV 116
           L++S       + +    L  LQ LD   + L      + F +   L  +          
Sbjct: 381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 117 FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYL 176
           F       +SL  L  + N+      +N+ ++   L +L LSK  L             L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 177 RILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           ++L++++N+           L  L  L    NR++            L   +L  N++
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (265), Expect = 3e-26
 Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 6/188 (3%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSA--IFTTYTLKDVSFRENQLTG 115
           L ++    +  I  +   L SL  LDLS N LS S   +     T +L+ +    N    
Sbjct: 333 LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI- 389

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +  +       LQHLDF  +TL      +   SL  L YL +S               T 
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 176 LRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           L  L +A N F      ++  N T L  L L + +L+      F  L  L+ ++++ NNL
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 235 QALLLYSF 242
             L    +
Sbjct: 510 LFLDSSHY 517

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.0 bits (247), Expect = 6e-24
 Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
              +++S   L         N S LQ LDLS   +      A    + L ++    N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNC 173
              P      +SL++L      L+  + +     L  L  L ++ N +H   +P+  SN 
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKL----MGLYLGRNRLQGEIPREFGNLAELEQMSL 229
           T L  + L+YN        D+  L +     + L +  N +     + F  + +L +++L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTL 211

Query: 230 AENNLQALLLYSF 242
             N   + ++ + 
Sbjct: 212 RGNFNSSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.1 bits (224), Expect = 7e-21
 Identities = 35/185 (18%), Positives = 63/185 (34%), Gaps = 6/185 (3%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L++S   +          L  L +L L+ N +    P +     +L+++   E +L  + 
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR 177
              I    +L+ L+ + N +         S+L  L ++ LS N +     + L       
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 178 I----LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAEN 232
                L ++ N     +        KL  L L  N     I +    NLA L    L   
Sbjct: 181 QVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 233 NLQAL 237
             +  
Sbjct: 240 EFKDE 244

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.3 bits (209), Expect = 6e-19
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 2/136 (1%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFREN 111
            K+  L+IS  N           L+SL +L ++ N    +  S +F   T L  +   + 
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 112 QLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS 171
           QL  +          LQ L+ S N L   + ++  + L  L  L  S N +         
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 172 NCTYLRILSLAYNDFS 187
               L   +L  N  +
Sbjct: 543 FPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 7e-18
 Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 16/200 (8%)

Query: 51  HSHKVTALNISGLNLTG-TIPSQLGNLSSLQSLDLSFNRLSGSIPSAI----FTTYTLKD 105
               +  LN++   +    +P+   NL++L  +DLS+N +     + +            
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 106 VSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG 165
           +    N +        F    L  L    N  S  I      +L  L    L        
Sbjct: 186 LDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 166 I------PSTLSNCTYLRI--LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE 217
                  PS +     + I    L Y +           L  +  + L    +  +   +
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLED 302

Query: 218 FGNLAELEQMSLAENNLQAL 237
                + + +S+    L+  
Sbjct: 303 VPKHFKWQSLSIIRCQLKQF 322

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.3 bits (196), Expect = 3e-17
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 106 VSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG 165
               + +L+ V P  I   SS +++D S N L   + +   S+   L +L LS+  +   
Sbjct: 16  YQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 166 IPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELE 225
                    +L  L L  N      P     LT L  L     +L        G L  L+
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 226 QMSLAENNLQAL 237
           ++++A N + + 
Sbjct: 132 KLNVAHNFIHSC 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 33/209 (15%), Positives = 56/209 (26%), Gaps = 32/209 (15%)

Query: 58  LNISGLNLTGTIPS-QLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLK--------DVSF 108
           L + G   +  I    L NL+ L    L            IF    ++        +   
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 109 RENQLTGVFPSFIFNKSSLQHLDFSRNTLSG------------------EIPANICSSLP 150
                           +++  +  +  ++                    ++       LP
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 151 FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS--GAVPKDIGNLTKLMGLYLGRN 208
           FL  L L+ N     I         L  L L+ N  S  G           L  L L  N
Sbjct: 329 FLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 209 RLQGEIPREFGNLAELEQMSLAENNLQAL 237
                +   F  L EL+ +    + L+ +
Sbjct: 387 GAI-IMSANFMGLEELQHLDFQHSTLKRV 414

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 7e-13
 Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188
                   LS ++P +I SS      + LS N L      + SN + L+ L L+  +   
Sbjct: 15  TYQCMDQKLS-KVPDDIPSST---KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 189 AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
              K    L  L  L L  N +Q   P  F  L  LE +   E  L +L  +  
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +T L++S   L          L  LQ L++S N L     S     Y+L  +    N++
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML 162
                       SL   + + N+++      IC    FL ++   K  L
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSVA-----CICEHQKFLQWVKEQKQFL 577

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 6e-26
 Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 13/190 (6%)

Query: 52  SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111
                AL +  + L    P Q   LS LQ + +    L   +P  +     L+ ++   N
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN 137

Query: 112 QLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICS--------SLPFLDYLYLSKNMLH 163
            L    P+ I + + L+ L         E+P  + S         L  L  L L    + 
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 164 GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE 223
             +P++++N   L+ L +  +  S A+   I +L KL  L L         P  FG  A 
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 224 LEQMSLAENN 233
           L+++ L + +
Sbjct: 255 LKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 3e-22
 Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 13/190 (6%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT---------LKDVSF 108
           L ++   L   +P+ + +L+ L+ L +        +P  + +T           L+ +  
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 109 RENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS 168
               +    P+ I N  +L+ L    + LS  +   I   LP L+ L L         P 
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPP 247

Query: 169 TLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMS 228
                  L+ L L        +P DI  LT+L  L L        +P     L     + 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 229 LAENNLQALL 238
           +  +    L 
Sbjct: 308 VPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 3e-20
 Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 35/217 (16%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPS--------------- 95
           HS     L   G          L       + D +    +    +               
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 96  ------AIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSL 149
                    T      +  R   L   FP   F  S LQH+      L  E+P  +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QF 126

Query: 150 PFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGN---------LTKL 200
             L+ L L++N L   +P+++++   LR LS+        +P+ + +         L  L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 201 MGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
             L L    ++  +P    NL  L+ + +  + L AL
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 9/162 (5%)

Query: 73  LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132
             + S  ++L    +         +       +                 N ++ Q    
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETR 63

Query: 133 SRNTLSGEIPANI-CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVP 191
           +   L       +  ++ P    L L    L    P      ++L+ +++        +P
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 192 KDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
             +     L  L L RN L+  +P    +L  L ++S+    
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 24/139 (17%)

Query: 120 FIFNKSSLQHLDFSRNTLSGEIPANICS-------------------SLPFLDYLYLSKN 160
              + S  ++L F  +T        +                     +         +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 161 MLHGGIPSTLSNCTY--LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF 218
            L       L + T      L L         P     L+ L  + +    L  E+P   
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 219 GNLAELEQMSLAENNLQAL 237
              A LE ++LA N L+AL
Sbjct: 124 QQFAGLETLTLARNPLRAL 142

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.5 bits (243), Expect = 2e-23
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 64  NLTGTIPSQLGNLSSLQSLDLSFNRLS--GSIPSAIFTTYTLKDVSFRENQLTGVFPSFI 121
           N  G   S++ +L SL+ LDLS N LS  G    + F T +LK +    N +  +  S  
Sbjct: 335 NKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNF 392

Query: 122 FNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSL 181
                L+HLDF  + L      ++  SL  L YL +S            +  + L +L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 182 AYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
           A N F      DI   L  L  L L + +L+   P  F +L+ L+ +++A N L+++
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.9 bits (213), Expect = 2e-19
 Identities = 47/190 (24%), Positives = 69/190 (36%), Gaps = 29/190 (15%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
                  LN    IP  L    S ++LDLSFN L   + S  F ++              
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFP------------- 52

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
                      LQ LD SR  +   I      SL  L  L L+ N +        S  + 
Sbjct: 53  ----------ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ-GEIPREFGNLAELEQMSLAENNL 234
           L+ L     + +      IG+L  L  L +  N +Q  ++P  F NL  LE + L+ N +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 235 QALLLYSFMP 244
           Q++       
Sbjct: 162 QSIYCTDLRV 171

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 2e-19
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQ 112
            +  L++S   +  T+ S    L  L+ LD   + L      ++F +   L  +      
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSN 172
               F       SSL+ L  + N+       +I + L  L +L LS+  L    P+  ++
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 173 CTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPR 216
            + L++L++A N    +VP  I   LT L  ++L  N      PR
Sbjct: 493 LSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 3e-19
 Identities = 39/190 (20%), Positives = 65/190 (34%), Gaps = 7/190 (3%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
              L++S   L         +   LQ LDLS   +      A  +   L  +    N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML-HGGIPSTLSNC 173
            +        SSLQ L      L+  +       L  L  L ++ N++    +P   SN 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKL----MGLYLGRNRLQGEIPREFGNLAELEQMSL 229
           T L  L L+ N        D+  L ++    + L L  N +   I         L +++L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 230 AENNLQALLL 239
             N     ++
Sbjct: 208 RNNFDSLNVM 217

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.9 bits (200), Expect = 8e-18
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 6/185 (3%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L++S   +         +LS L +L L+ N +      A     +L+ +   E  L  
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +    I +  +L+ L+ + N +         S+L  L++L LS N +     + L     
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 176 LRI----LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLA 230
           + +    L L+ N  +  +        +L  L L  N     + +     LA LE   L 
Sbjct: 175 MPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 231 ENNLQ 235
               +
Sbjct: 234 LGEFR 238

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 12/190 (6%)

Query: 53  HKVTALNISGLNLTGTIP-SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111
             V++ ++  + +      S       L+ ++  F +             +LK ++F  N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK------SLKRLTFTSN 335

Query: 112 QLTGVFPSFIFNKSSLQHLDFSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           +      S +   S L+ LD SRN LS     +        L YL LS N +   + S  
Sbjct: 336 KGGNA-FSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392

Query: 171 SNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
                L  L   +++        +  +L  L+ L +     +      F  L+ LE + +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 230 AENNLQALLL 239
           A N+ Q   L
Sbjct: 453 AGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 17/206 (8%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRL-SGSIPSAIFTTYTLKDVSFREN 111
             +  L     NL       +G+L +L+ L+++ N + S  +P        L+ +    N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 112 QLTGVFPSFIFNKSSLQ----HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP 167
           ++  ++ + +     +      LD S N ++  I       +  L  L L  N     + 
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR-LHKLTLRNNFDSLNVM 217

Query: 168 ST-LSNCTYLRILSLAYNDFSGA---VPKDIGNLTKLMGLYLGRNRLQG------EIPRE 217
            T +     L +  L   +F         D   L  L  L +   RL        +I   
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 218 FGNLAELEQMSLAENNLQALLLYSFM 243
           F  L  +   SL    ++ +  +S+ 
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYN 303

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 7e-13
 Identities = 38/184 (20%), Positives = 58/184 (31%), Gaps = 14/184 (7%)

Query: 64  NLTGTIPSQLGNLSSLQSLDLSFNRLSGS---IPSAIFTTYTLKDVSFRENQLTGVFPSF 120
           NL     S L  L +L   +     L      I         +   S     +  V   F
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV-KDF 300

Query: 121 IFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILS 180
            +N    QHL+        + P      L  L  L  + N        +  +   L  L 
Sbjct: 301 SYN-FGWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLD 353

Query: 181 LAYND--FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
           L+ N   F G   +     T L  L L  N +   +   F  L +LE +    +NL+ + 
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 239 LYSF 242
            +S 
Sbjct: 413 EFSV 416

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 13/189 (6%)

Query: 58  LNISGLNLTGT-IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV 116
             ++ L+     I      L+++ S  L    +   +    +     + +     +    
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ- 318

Query: 117 FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH--GGIPSTLSNCT 174
           FP+      SL+ L F+ N       + +   LP L++L LS+N L   G    +    T
Sbjct: 319 FPTLKLK--SLKRLTFTSNKGG-NAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENN 233
            L+ L L++N     +  +   L +L  L    + L+       F +L  L  + ++  +
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 234 LQALLLYSF 242
            +      F
Sbjct: 433 TRVAFNGIF 441

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 7e-23
 Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 6/192 (3%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLS-GSIPSAIFTTYT-LKDVSFRENQ 112
            T L +    L          L+ L  L LS N LS     S      T LK +    N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSN 172
           +  +  +F      L+HLDF  + L      ++  SL  L YL +S            + 
Sbjct: 90  VITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 173 CTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLA 230
            + L +L +A N F      DI   L  L  L L + +L+ ++    F +L+ L+ ++++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 231 ENNLQALLLYSF 242
            NN  +L  + +
Sbjct: 208 HNNFFSLDTFPY 219

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 8/165 (4%)

Query: 78  SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTL 137
           S   +  +   L+ S+P+ I ++     +    N+L  +        + L  L  S N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 138 S-GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-G 195
           S     +        L YL LS N +   + S       L  L   +++        +  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 196 NLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQALLL 239
           +L  L+ L +     +       F  L+ LE + +A N+ Q   L
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 10/167 (5%)

Query: 51  HSHKVTALNISGLNLTGTIPSQ--LGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVS 107
              ++  L+    NL   +       +L +L  LD+S         + IF    +L+ + 
Sbjct: 99  GLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK 156

Query: 108 FRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI 166
              N     F   IF +  +L  LD S+  L  ++     +SL  L  L +S N      
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 167 PSTLSNCTYLRILSLAYNDFSGAVPKDI--GNLTKLMGLYLGRNRLQ 211
                    L++L  + N       K       + L  L L +N   
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 1e-22
 Identities = 34/195 (17%), Positives = 74/195 (37%), Gaps = 12/195 (6%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE 110
           + ++     ++  +L   + S   +  +++ LDLS N LS    + +     L+ ++   
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           N L       + + S+L+ LD + N +  E+        P ++ L+ + N +     S  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCSRG 119

Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSL 229
                 + + LA N  +     D G  +++  L L  N +          +   LE ++L
Sbjct: 120 QG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 230 AENNLQALLLYSFMP 244
             N +  +       
Sbjct: 177 QYNFIYDVKGQVVFA 191

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 2e-22
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 7/173 (4%)

Query: 63  LNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIF 122
           L+L      +L    S+++L  + N +S  +  +       K++    N++T +      
Sbjct: 85  LDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYLANNKITMLRDLDEG 141

Query: 123 NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA 182
            +S +Q+LD   N +     A + +S   L++L L  N ++  +         L+ L L+
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLS 199

Query: 183 YNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
            N  +  +  +  +   +  + L  N+L   I +       LE   L  N   
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 2e-19
 Identities = 26/187 (13%), Positives = 66/187 (35%), Gaps = 12/187 (6%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFREN 111
             +  L+ +  N++  +          +++ L+ N+++  +        + ++ +  + N
Sbjct: 99  PSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLN 154

Query: 112 QLTGV-FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           ++  V F     +  +L+HL+   N +  ++   +      L  L LS N L   +    
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLAF-MGPEF 210

Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLA 230
            +   +  +SL  N     + K +     L    L  N                   ++A
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVA 268

Query: 231 ENNLQAL 237
           +  ++ L
Sbjct: 269 KQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.1 bits (206), Expect = 5e-19
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 11/169 (6%)

Query: 69  IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQ 128
           I     N +  +   ++ + L  ++ S   + + +K++    N L+ +  + +   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188
            L+ S N L  E       SL  L  L L+ N +       L     +  L  A N+ S 
Sbjct: 62  LLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 189 AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
            V            +YL  N++      + G  + ++ + L  N +  +
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 13/73 (17%), Positives = 24/73 (32%)

Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
            I     N    +I  +  +    A+     +   +  L L  N L      +     +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 225 EQMSLAENNLQAL 237
           E ++L+ N L   
Sbjct: 61  ELLNLSSNVLYET 73

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 3/98 (3%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT-GV 116
           L++S   L   +  +  + + +  + L  N+L   I  A+  +  L+    R N    G 
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 117 FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDY 154
              F      +Q +               C+      Y
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.8 bits (236), Expect = 1e-22
 Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 11/198 (5%)

Query: 47  TCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKD 105
            C      V             +P  +   +  + LDL  NR+  ++    F ++  L++
Sbjct: 8   ECSAQDRAV---LCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEE 60

Query: 106 VSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG 165
           +   EN ++ V P    N  +L+ L    N L   IP  + + L  L  L +S+N +   
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL 119

Query: 166 IPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAEL 224
           +     +   L+ L +  ND      +    L  L  L L +  L   IP E   +L  L
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGL 178

Query: 225 EQMSLAENNLQALLLYSF 242
             + L   N+ A+  YSF
Sbjct: 179 IVLRLRHLNINAIRDYSF 196

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.7 bits (215), Expect = 8e-20
 Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 7/188 (3%)

Query: 53  HKVTALNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVSFRE 110
           + + +L +   N    I  +    L+SL+ L L    L+ SIP+   +  + L  +  R 
Sbjct: 128 YNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
             +  +          L+ L+ S       +  N    L  L  L ++   L       +
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAV 244

Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSL 229
            +  YLR L+L+YN  S      +  L +L  + L   +L   +    F  L  L  +++
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNV 303

Query: 230 AENNLQAL 237
           + N L  L
Sbjct: 304 SGNQLTTL 311

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.8 bits (205), Expect = 2e-18
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 3/186 (1%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT-YTLKDVSFREN 111
             +T L+IS   +   +     +L +L+SL++  N L   I    F+   +L+ ++  + 
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC 162

Query: 112 QLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS 171
            LT +    + +   L  L      ++  I       L  L  L +S       +     
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 172 NCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAE 231
               L  LS+ + + +      + +L  L  L L  N +          L  L+++ L  
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 232 NNLQAL 237
             L  +
Sbjct: 282 GQLAVV 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFR 109
           +   +T+L+I+  NLT      + +L  L+ L+LS+N +S +I  ++      L+++   
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLV 280

Query: 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163
             QL  V P      + L+ L+ S N L+  +  ++  S+  L+ L L  N L 
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.2 bits (229), Expect = 9e-22
 Identities = 34/195 (17%), Positives = 74/195 (37%), Gaps = 12/195 (6%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE 110
           + ++     ++  +L   + S   +  +++ LDLS N LS    + +     L+ ++   
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           N L       + + S+L+ LD + N +  E+        P ++ L+ + N +     S  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISRVSCSRG 119

Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSL 229
                 + + LA N  +     D G  +++  L L  N +          +   LE ++L
Sbjct: 120 QG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 230 AENNLQALLLYSFMP 244
             N +  +       
Sbjct: 177 QYNFIYDVKGQVVFA 191

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.0 bits (205), Expect = 2e-18
 Identities = 30/174 (17%), Positives = 63/174 (36%), Gaps = 11/174 (6%)

Query: 69  IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQ 128
           I     N +  +   ++ + L  ++ S   + + +K++    N L+ +  + +   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188
            L+ S N L  E       SL  L  L L+ N +       L     +  L  A N+ S 
Sbjct: 62  LLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 189 AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
                         +YL  N++      + G  + ++ + L  N +  +     
Sbjct: 114 V---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 20/190 (10%), Positives = 50/190 (26%), Gaps = 10/190 (5%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL-TGV 116
           L++S   L   +  +  + + +  + L  N+L   I  A+  +  L+    R N    G 
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 117 FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYL 176
              F      +Q +         ++              +                   L
Sbjct: 254 LRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 177 RILSLAYNDFSGAVPKDIG----NLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
           +    A     G+  + +     N  +   +   + + +  I +          +   + 
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 233 NLQALLLYSF 242
            L   +    
Sbjct: 371 ALDEQVSNGR 380

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 22/186 (11%), Positives = 48/186 (25%), Gaps = 7/186 (3%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
           T +++    L   I   L    +L+  DL  N          F+    +  +  +  +  
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKK 274

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG----GIPSTLS 171
           +        +      +       ++PA     L  L     +     G     +     
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 172 NCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAE 231
           N    R +      +   + +        + L   +  L  ++       AEL+      
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 232 NNLQAL 237
                L
Sbjct: 394 VGQIEL 399

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 13/73 (17%), Positives = 24/73 (32%)

Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
            I     N    +I  +  +    A+     +   +  L L  N L      +     +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 225 EQMSLAENNLQAL 237
           E ++L+ N L   
Sbjct: 61  ELLNLSSNVLYET 73

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.6 bits (225), Expect = 5e-21
 Identities = 32/189 (16%), Positives = 71/189 (37%), Gaps = 1/189 (0%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
           + +L++S   +T      L   ++LQ L L  +R++     A ++  +L+ +   +N L+
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP-STLSNC 173
            +  S+    SSL++L+   N        ++  +L  L  L +        I     +  
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L  L +          + + ++  +  L L  +     +      L+ +  + L + N
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 234 LQALLLYSF 242
           L        
Sbjct: 208 LARFQFSPL 216

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 8/188 (4%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGV 116
            +    + T +IPS L   ++++SLDLSFN+++  I          L+ +  + +++  +
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTI 65

Query: 117 FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTY 175
                ++  SL+HLD S N LS  + ++    L  L YL L  N     G+ S   N T 
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 176 LRILSLA-YNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           L+ L +     FS     D   LT L  L +    L+    +   ++ ++  ++L  +  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 235 QALLLYSF 242
             LL    
Sbjct: 185 AFLLEIFA 192

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 9e-18
 Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 3/191 (1%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVSFRENQLT 114
             L +    +         +L SL+ LDLS N LS S+ S+ F    +LK ++   N   
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 115 GVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
            +  + +F   ++LQ L         EI     + L  L+ L +    L      +L + 
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
             +  L+L  ++ +  +      L+ +  L L    L                M      
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 234 LQALLLYSFMP 244
              L   SF  
Sbjct: 232 GSVLTDESFNE 242

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 8e-17
 Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 14/192 (7%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVSFRENQLTGV 116
           L+I    L   + +    L  ++ + +  +++   +P +      +L+ +   EN +   
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 117 F---PSFIFNKSSLQHLDFSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSN 172
           +    +      SLQ L  S+N L   +    I  +L  L  L +S+N  H  +P +   
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQW 408

Query: 173 CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
              +R L+L+       V   I     L  L +  N L          L EL    ++ N
Sbjct: 409 PEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQEL---YISRN 461

Query: 233 NLQALLLYSFMP 244
            L+ L   S  P
Sbjct: 462 KLKTLPDASLFP 473

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 6e-16
 Identities = 28/188 (14%), Positives = 64/188 (34%), Gaps = 15/188 (7%)

Query: 68  TIPSQLGNLSSLQSLDLSFNRLSGSIPSAI--------FTTYTLKDVSFRENQLTGVFPS 119
            +   +  LS ++  D + N L    PS            T T++ +   +  L     +
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 120 FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST---LSNCTYL 176
                  ++ +    + +   +P +    L  L++L LS+N++                L
Sbjct: 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 177 RILSLAYNDFS--GAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           + L L+ N         + +  L  L  L + RN     +P       ++  ++L+   +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 235 QALLLYSF 242
           + +     
Sbjct: 423 RVVKTCIP 430

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 13/161 (8%)

Query: 53  HKVTALNISGLNLT--GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE 110
             +  L +S  +L         L  L +L SLD+S N     +P +      ++ ++   
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
             +  V  + I    +L+ LD S N L      +    LP L  LY+S+N L   +P   
Sbjct: 420 TGIR-VVKTCIP--QTLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKLKT-LPDA- 469

Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211
           S    L ++ ++ N            LT L  ++L  N   
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 8e-13
 Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 3/184 (1%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSF-RENQLTG 115
           L++S  +L+    S  G LSSL+ L+L  N       +++F   T L+ +        + 
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +        +SL  L+    +L     +    S+  + +L L  +     +       + 
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           +R L L   + +      +        +     R        F  L +L +  L  + ++
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 236 ALLL 239
               
Sbjct: 258 FDDC 261

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 6e-12
 Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 18/186 (9%)

Query: 56  TALNISGLNLTGTIPSQ---LGNLSSLQSLDLSFNRLSGSIPSAIFTTYT---LKDVSFR 109
             L++S   +           G   SLQ+L LS N L  S+        T   L  +   
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDIS 395

Query: 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
            N    +  S       ++ L+ S   +   +   I  +L  LD   +S N L       
Sbjct: 396 RNTFHPMPDSC-QWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLD---VSNNNL-DSFSLF 449

Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
           L     L+ L ++ N     +P        L+ + + RN+L+      F  L  L+++ L
Sbjct: 450 LPR---LQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

Query: 230 AENNLQ 235
             N   
Sbjct: 505 HTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 9e-12
 Identities = 30/204 (14%), Positives = 65/204 (31%), Gaps = 17/204 (8%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L I  L+L       L ++  +  L L  +  +  +        +++ +  R+  L  
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

Query: 116 VFPSFIFNK---SSLQHLDFSRNTLSGEIPANIC---------SSLPFLDYLYLSKNMLH 163
              S +      S ++ L F  + L+ E    +          S + F D         +
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270

Query: 164 GGIPSTLSN-----CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF 218
                 +S         +R L +        +      L K+  + +  +++        
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 219 GNLAELEQMSLAENNLQALLLYSF 242
            +L  LE + L+EN +    L + 
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNS 354

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
            +    D    + +  IP+ + +++  LD   LS N +       L  C  L++L L  +
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLTAAMKSLD---LSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
             +        +L  L  L L  N L       FG L+ L+ ++L  N  Q L
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 146 CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYL 205
           C +    D            IPS L+    ++ L L++N  +     D+     L  L L
Sbjct: 4   CDASGVCD---GRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 206 GRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
             +R+       F +L  LE + L++N+L +L    F
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.8 bits (221), Expect = 6e-21
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 14/184 (7%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +T L ++G  +  +I   +  L++L+ L+L+ N+++   P +      L ++    N++
Sbjct: 45  SITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNKI 100

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T    S + N ++L+ L  + + +S   P    ++L  +  L L  N       S LSN 
Sbjct: 101 TD--ISALQNLTNLRELYLNEDNISDISPL---ANLTKMYSLNLGANHNL-SDLSPLSNM 154

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L  L++  +      P  I NLT L  L L  N+++   P    +L  L   +   N 
Sbjct: 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210

Query: 234 LQAL 237
           +  +
Sbjct: 211 ITDI 214

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.4 bits (220), Expect = 9e-21
 Identities = 42/205 (20%), Positives = 87/205 (42%), Gaps = 30/205 (14%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP------------------ 94
            K+ +LN+   N   +  S L N++ L  L ++ +++    P                  
Sbjct: 132 TKMYSLNLGA-NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE 190

Query: 95  --SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152
             S + +  +L   +   NQ+T +  + + N + L  L    N ++   P    ++L  L
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP---LANLSQL 245

Query: 153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212
            +L +  N +     + + + T L++L++  N  S      + NL++L  L+L  N+L  
Sbjct: 246 TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN 301

Query: 213 EIPREFGNLAELEQMSLAENNLQAL 237
           E     G L  L  + L++N++  +
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDI 326

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.1 bits (214), Expect = 6e-20
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 13/180 (7%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
            +L+++   +    P  L +L+SL       N+++   P  +     L  +    N++T 
Sbjct: 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +  S + N S L  L+   N +S  I A     L  L  L +  N +     S L+N + 
Sbjct: 236 L--SPLANLSQLTWLEIGTNQISD-INA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQ 288

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L  L L  N       + IG LT L  L+L +N +    P    +L++++    A   ++
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 14/184 (7%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           K+T L I    +T    S L NL++L+ L L+ + +S   P A  T   +  ++   N  
Sbjct: 89  KLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLANLT--KMYSLNLGANHN 144

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
                S + N + L +L  + + +    P    ++L  L  L L+ N +    P  L++ 
Sbjct: 145 LSD-LSPLSNMTGLNYLTVTESKVKDVTPI---ANLTDLYSLSLNYNQIEDISP--LASL 198

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L   +   N  +   P  + N+T+L  L +G N++    P    NL++L  + +  N 
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254

Query: 234 LQAL 237
           +  +
Sbjct: 255 ISDI 258

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 14/184 (7%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           +     +   ++T  +      L S+  L ++  +++        T   L+ ++   NQ+
Sbjct: 23  EGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQGIEYLT--NLEYLNLNGNQI 78

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T + P  + N   L +L    N ++ +I A    +L  L  LYL+++ +    P  L+N 
Sbjct: 79  TDISP--LSNLVKLTNLYIGTNKIT-DISAL--QNLTNLRELYLNEDNISDISP--LANL 131

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T +  L+L  N         + N+T L  L +  ++++   P    NL +L  +SL  N 
Sbjct: 132 TKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188

Query: 234 LQAL 237
           ++ +
Sbjct: 189 IEDI 192

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.0 bits (201), Expect = 4e-18
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 14/182 (7%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L      +    P    +L+      L    ++  +        ++  +     ++  
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVAS 58

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +    I   ++L++L+ + N ++   P    S+L  L  LY+  N +     S L N T 
Sbjct: 59  I--QGIEYLTNLEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           LR L L  ++ S      + NLTK+  L LG N    ++     N+  L  +++ E+ ++
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 236 AL 237
            +
Sbjct: 169 DV 170

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 1e-20
 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 27/193 (13%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           ++T L I+   L  ++P    +L   + LD   NRLS ++P    +   LK +    NQL
Sbjct: 81  QITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TLPELPAS---LKHLDVDNNQL 132

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T + P      + L++++   N L+  +P    S    L+ L +  N L   +P    + 
Sbjct: 133 T-MLPELP---ALLEYINADNNQLT-MLPELPTS----LEVLSVRNNQL-TFLPELPES- 181

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKL----MGLYLGRNRLQGEIPREFGNLAELEQMSL 229
             L  L ++ N    ++P             +      NR+   IP    +L     + L
Sbjct: 182 --LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237

Query: 230 AENNLQALLLYSF 242
            +N L + +  S 
Sbjct: 238 EDNPLSSRIRESL 250

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.4 bits (185), Expect = 6e-16
 Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 29/183 (15%)

Query: 58  LNISGL---NLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
             + G         +   L  ++    L L+   LS S+P  +     +  +   +N L 
Sbjct: 39  QALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI 93

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
              P      +SL++LD   N LS  +P    S    L +L +  N L   +P   +   
Sbjct: 94  -SLPELP---ASLEYLDACDNRLS-TLPELPAS----LKHLDVDNNQLT-MLPELPAL-- 141

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
            L  ++   N  +  +P+   +L     L +  N+L   +P    +L  L    ++ N L
Sbjct: 142 -LEYINADNNQLT-MLPELPTSLEV---LSVRNNQLT-FLPELPESLEAL---DVSTNLL 192

Query: 235 QAL 237
           ++L
Sbjct: 193 ESL 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 4e-15
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 22/169 (13%)

Query: 69  IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQ 128
             S             + N     +   +       ++      L+   P  +     + 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLS-SLPDNLP--PQIT 83

Query: 129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG 188
            L+ ++N L   +P    S    L+YL    N L   +P   ++   L+ L +  N  + 
Sbjct: 84  VLEITQNALI-SLPELPAS----LEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT- 133

Query: 189 AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
            +P+    L     +    N+L   +P    +L  L   S+  N L  L
Sbjct: 134 MLPELPALLEY---INADNNQLT-MLPELPTSLEVL---SVRNNQLTFL 175

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.7 bits (220), Expect = 1e-20
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 8/190 (4%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLT 114
             LN+    +     +   +L  L+ L LS N +  +I    F     L  +   +N+LT
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT 125

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK-NMLHGGIPSTLSNC 173
            +        S L+ L    N +   IP+   + +P L  L L +   L           
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAEN 232
           + LR L+LA  +    +P ++  L KL  L L  N L   I    F  L  L+++ + ++
Sbjct: 185 SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQS 241

Query: 233 NLQALLLYSF 242
            +Q +   +F
Sbjct: 242 QIQVIERNAF 251

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 7e-20
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 10/189 (5%)

Query: 53  HKVTALNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVSFRE 110
             +  L +S  ++  TI       L++L +L+L  NRL+ +IP+  F     LK++  R 
Sbjct: 88  RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145

Query: 111 NQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
           N +  + PS+ FN+  SL+ LD         I       L  L YL L+   L   IP  
Sbjct: 146 NPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202

Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMS 228
           L+    L  L L+ N  S   P     L  L  L++ ++++Q  I R  F NL  L +++
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEIN 261

Query: 229 LAENNLQAL 237
           LA NNL  L
Sbjct: 262 LAHNNLTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 3e-18
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 9/188 (4%)

Query: 52  SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRE 110
           S++ + +     NL   +P  +   ++ + L+L  N++   I    F     L+ +    
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSR 97

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           N +  +        ++L  L+   N L+  IP      L  L  L+L  N +        
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156

Query: 171 SNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
           +    LR L L        + +     L+ L  L L    L+ EIP     L +L+++ L
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL 214

Query: 230 AENNLQAL 237
           + N+L A+
Sbjct: 215 SGNHLSAI 222

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 9e-17
 Identities = 47/181 (25%), Positives = 71/181 (39%), Gaps = 8/181 (4%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVS-FRENQLTG 115
           L +    LT         LS L+ L L  N +  SIPS  F    +L+ +      +L+ 
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 116 VFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
           +     F   S+L++L+ +   L  EIP    + L  LD L LS N L    P +     
Sbjct: 176 I-SEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           +L+ L +  +           NL  L+ + L  N L       F  L  LE++ L  N  
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

Query: 235 Q 235
            
Sbjct: 292 N 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 25/108 (23%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L++SG +L+   P     L  LQ L +  +++   I    F                 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFD---------------- 252

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163
                  N  SL  ++ + N L+  +P ++ + L  L+ ++L  N  +
Sbjct: 253 -------NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 146 CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYL 205
           CS       +   +  L   +P  +S  T  R+L+L  N           +L  L  L L
Sbjct: 39  CSCSNQFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQL 95

Query: 206 GRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
            RN ++      F  LA L  + L +N L  +
Sbjct: 96  SRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.7 bits (220), Expect = 1e-20
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 6/184 (3%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLT 114
             LN+   N+         +L  L+ L L  N +   I    F     L  +   +N LT
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT 136

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK-NMLHGGIPSTLSNC 173
            +        S L+ L    N +   IP+   + +P L  L L +   L           
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
             L+ L+L   +    +P ++  L  L  L +  N      P  F  L+ L+++ +  + 
Sbjct: 196 FNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 234 LQAL 237
           +  +
Sbjct: 254 VSLI 257

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.0 bits (213), Expect = 1e-19
 Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 58  LNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVSFRENQLTG 115
           L +   ++   I       L+SL +L+L  N L+  IPS  F     L+++  R N +  
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES 161

Query: 116 VFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
           + PS+ FN+  SL  LD         I       L  L YL L    +   +P  L+   
Sbjct: 162 I-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLV 218

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENN 233
            L  L ++ N F    P     L+ L  L++  +++   I R  F  LA L +++LA NN
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN 277

Query: 234 LQAL 237
           L +L
Sbjct: 278 LSSL 281

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 4/130 (3%)

Query: 56  TALNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
             L++  L     I       L +L+ L+L    +   +P+       L+++    N   
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVG-LEELEMSGNHFP 231

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
            + P      SSL+ L    + +S  I  N    L  L  L L+ N L        +   
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 175 YLRILSLAYN 184
           YL  L L +N
Sbjct: 291 YLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
           +    +  +R  LS E+P  I        YL L +N +      T  +  +L +L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQALLLYSF 242
                       L  L  L L  N L   IP   F  L++L ++ L  N ++++  Y+F
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 25/108 (23%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L +SG +     P     LSSL+ L +  +++S  I    F                 
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFD---------------- 263

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163
                    +SL  L+ + N LS  +P ++ + L +L  L+L  N  +
Sbjct: 264 -------GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 3e-20
 Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 34/201 (16%)

Query: 47  TCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDV 106
           +C               NLT  +P     L++ + L LSFN +  ++ ++ F        
Sbjct: 1   SCSFDGRIA---FYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLE---- 48

Query: 107 SFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI 166
                               LQ L+         I      +LP L  L L  + ++   
Sbjct: 49  -------------------QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89

Query: 167 PSTLSNCTYLRILSLAYNDFSGAV--PKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAE 223
           P       +L  L L +   S AV       NL  L  L L +N+++   +   FG L  
Sbjct: 90  PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149

Query: 224 LEQMSLAENNLQALLLYSFMP 244
           L+ +  + N +  +  +   P
Sbjct: 150 LKSIDFSSNQIFLVCEHELEP 170

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.5 bits (204), Expect = 3e-18
 Identities = 49/211 (23%), Positives = 75/211 (35%), Gaps = 21/211 (9%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ 112
             +  LN++   +          L +LQ L+LS+N L     S  +    +  +  ++N 
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 113 LTGVFPSFIFNKSSLQHLDFSRN--------------TLSGEIPANICSSLPFLDYLYLS 158
           +  +          LQ LD   N               LSG     +       + ++LS
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409

Query: 159 KNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPR 216
           +N L    I   L    +L+IL L  N FS             L  L+LG N LQ     
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 217 E-----FGNLAELEQMSLAENNLQALLLYSF 242
           E     F  L+ L+ + L  N L +L    F
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 4e-17
 Identities = 35/200 (17%), Positives = 74/200 (37%), Gaps = 21/200 (10%)

Query: 58  LNISGLNLTGTIPSQLGNLS------SLQSLDLSFNRLSGSIPSAIFTTYT--------- 102
            +++  +L   +    G          L+ LD+S N  +  I        +         
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 103 ---LKDVSFRENQLTGVFPSFIFN--KSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL 157
              +    F  + +     +      +SS++HLD S   +   + + +  +L  L  L L
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNL 297

Query: 158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE 217
           + N ++            L++L+L+YN        +   L K+  + L +N +     + 
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 218 FGNLAELEQMSLAENNLQAL 237
           F  L +L+ + L +N L  +
Sbjct: 358 FKFLEKLQTLDLRDNALTTI 377

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.1 bits (195), Expect = 5e-17
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 12/188 (6%)

Query: 63  LNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP-SFI 121
           L+L     + +  + S+  + LS N+L  ++P    T   +      EN+L  +    F+
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLTANLI---HLSENRLENLDILYFL 422

Query: 122 FNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI-----PSTLSNCTYL 176
                LQ L  ++N  S        S  P L+ L+L +NML                ++L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 177 RILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA 236
           ++L L +N  +   P    +LT L GL L  NRL   +       A LE + ++ N L A
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLA 540

Query: 237 LLLYSFMP 244
                F+ 
Sbjct: 541 PNPDVFVS 548

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 28/212 (13%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
           V  L++S   +          L  L+ L+L++N+++     A +    L+ ++   N L 
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
            ++ S  +    + ++D  +N ++  I       L  L  L L  N L     +T+    
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIP 381

Query: 175 YLRILSLAYN---------------DFSGAVPKDIG------NLTKLMGLYLGRNRLQG- 212
            +  + L+ N                 S    +++        +  L  L L +NR    
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 213 EIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
              +       LEQ+ L EN LQ         
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 39/213 (18%), Positives = 64/213 (30%), Gaps = 25/213 (11%)

Query: 56  TALNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVSFRENQL 113
             L +       TI  +   NL +L+ LDL  +++   +    F   + L ++      L
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGL 109

Query: 114 TGVF--PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS 171
           +       +  N  +L  LD S+N +           L  L  +  S N +       L 
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169

Query: 172 NCT--YLRILSLAYNDFSGAVPKDIGNLTK------LMGLYLGRNRLQGEIPREFGN--- 220
                 L   SLA N     V  D G          L  L +  N    +I   F N   
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229

Query: 221 ---------LAELEQMSLAENNLQALLLYSFMP 244
                       +       +N++     +F  
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.8 bits (171), Expect = 7e-14
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 22/214 (10%)

Query: 51  HSHKVTALNISGLNLTG-TIPSQLGNLSSLQSLDLSFNRLSGSIPSAI--FTTYTLKDVS 107
           +   +T L++S   +    +    G L+SL+S+D S N++       +      TL   S
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 108 FRENQLTGVFPSFIFNKS------SLQHLDFSRNTLSGEIPANICSSLPFLD-------- 153
              N L                   L+ LD S N  + +I  N  +++            
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 154 ---YLYLSKNMLHGGIPSTLSN--CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN 208
                    + +     +T +    + +R L L++        +    L  L  L L  N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 209 RLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
           ++       F  L  L+ ++L+ N L  L   +F
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 59  NISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGVF 117
            +     T         LS LQ L L+ N L+ S+P  +F+  T L+ +S   N+LT + 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163
            + +   ++L+ LD SRN L    P         L  L ++ N   
Sbjct: 521 HNDLP--ANLEILDISRNQLLAPNP----DVFVSLSVLDITHNKFI 560

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 5e-20
 Identities = 37/177 (20%), Positives = 73/177 (41%), Gaps = 11/177 (6%)

Query: 59  NISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP 118
           ++   N++  + S L    +++ LD S N ++  +   +     L  +  + N LT    
Sbjct: 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVE--LTILKLQHNNLTDT-A 242

Query: 119 SFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI 178
             + N   L  +D S N L  +I  +    +  L+ LY+S N L   +         L++
Sbjct: 243 WLL-NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 299

Query: 179 LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L L++N     V ++     +L  LYL  N +   +         L+ ++L+ N+  
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 15/185 (8%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ 112
            K+T L++S  NL           +SLQ+L LS NRL+  +  ++  +  L   +   N 
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSYNL 197

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSN 172
           L+      +    +++ LD S N+++  +   +   L     L L  N L     + L N
Sbjct: 198 LS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELT---ILKLQHNNLTD--TAWLLN 246

Query: 173 CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
              L  + L+YN+    +      + +L  LY+  NRL   +      +  L+ + L+ N
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

Query: 233 NLQAL 237
           +L  +
Sbjct: 306 HLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 49  DVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVS 107
           D+  +    +      +     + L +   ++ L+L+  ++   I +  F     ++ + 
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLY 99

Query: 108 FRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP 167
              N +  + P    N   L  L   RN LS  +P  I  + P L  L +S N L     
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQM 227
            T    T L+ L L+ N  +     D+  +  L    +  N L             +E++
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 210

Query: 228 SLAENNLQAL 237
             + N++  +
Sbjct: 211 DASHNSINVV 220

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 26/208 (12%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFREN 111
            +V  LN++ L +            ++Q L + FN +   +P  +F     L  +    N
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 112 QLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH----GGI 166
            L+ + P  IF+    L  L  S N L   I  +   +   L  L LS N L       I
Sbjct: 128 DLSSL-PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185

Query: 167 PS------------TLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI 214
           PS            TL+    +  L  ++N  +  V   +    +L  L L  N L  + 
Sbjct: 186 PSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DT 241

Query: 215 PREFGNLAELEQMSLAENNLQALLLYSF 242
                N   L ++ L+ N L+ ++ + F
Sbjct: 242 A-WLLNYPGLVEVDLSYNELEKIMYHPF 268

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 5/177 (2%)

Query: 68  TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSL 127
            I S L        + +              T    K V+F+ + +  +  + + +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187
           + L+ +   +  EI     +    +  LY+  N +    P    N   L +L L  ND S
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 188 GAVPKDI-GNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQALLLYSF 242
            ++P+ I  N  KL  L +  N L+  I  + F     L+ + L+ N L  + L   
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 6e-20
 Identities = 51/186 (27%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFREN-QL 113
             + + G  ++    +      +L  L L  N L+  I +A FT    L+ +   +N QL
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQL 93

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS-TLSN 172
             V P+       L  L   R  L  E+   +   L  L YLYL  N L   +P  T  +
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151

Query: 173 CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAE 231
              L  L L  N  S    +    L  L  L L +NR+   +    F +L  L  + L  
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFA 210

Query: 232 NNLQAL 237
           NNL AL
Sbjct: 211 NNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 81  SLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGE 140
           +       L  ++P  I      + +    N+++ V  +      +L  L    N L+  
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-R 70

Query: 141 IPANICSSLPFLDYLYLSKNMLHGGIPS-TLSNCTYLRILSLAYNDFSGAVPKDI-GNLT 198
           I A   + L  L+ L LS N     +   T      L  L L        +   +   L 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 199 KLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQALLLYSF 242
            L  LYL  N LQ  +P + F +L  L  + L  N + ++   +F
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 9e-10
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 56  TALNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQL 113
             L +    L   +P     +L +L  L L  NR+S S+P   F     L  +   +N++
Sbjct: 132 QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189

Query: 114 TGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163
             V     F     L  L    N LS  +P    + L  L YL L+ N   
Sbjct: 190 AHV-HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.5 bits (214), Expect = 1e-19
 Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 9/187 (4%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFREN 111
             +   N +              +S    LD S N L+           T L+ +  + N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMN 358

Query: 112 QLTGVFP-SFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
           QL  +   + +  +  SLQ LD S+N++S +     CS    L  L +S N+L   I   
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMS 228
           L     +++L L  N    ++PK +  L  L  L +  N+L+  +P   F  L  L+++ 
Sbjct: 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474

Query: 229 LAENNLQ 235
           L  N   
Sbjct: 475 LHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 32/180 (17%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             ++ S   L   +P  L        L++S N +S  + ++   + +             
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLS------------- 45

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
                      L+ L  S N +   +  ++      L+YL LS N L         N   
Sbjct: 46  ----------KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVN--- 91

Query: 176 LRILSLAYNDF-SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           L+ L L++N F +  + K+ GN+++L  L L    L+        +L   + + +     
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 27/190 (14%), Positives = 60/190 (31%), Gaps = 6/190 (3%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L++S   +     S +  +          + L+    +   +  TL ++    N    + 
Sbjct: 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241

Query: 118 PSFIFNKSSLQHLDFSRNTLSG----EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
              +   +++ +   S   L G           +SL  L    +  ++            
Sbjct: 242 Q--LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           + + I +   +            ++  + L    N L   +    G+L ELE + L  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 234 LQALLLYSFM 243
           L+ L   + M
Sbjct: 360 LKELSKIAEM 369

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 9/192 (4%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQL 113
            T LNIS   ++    S + +LS L+ L +S NR+   +  ++F     L+ +    N+L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 114 TGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSN 172
                    +   +L+HLD S N            ++  L +L LS   L       +++
Sbjct: 82  V----KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 173 CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
               ++L +    +     +D   L       L       +      +++     +L  +
Sbjct: 138 LNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 233 NLQALLLYSFMP 244
           N++ +L  +   
Sbjct: 196 NIKCVLEDNKCS 207

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 9/190 (4%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTY---TLKDVSFRENQLT 114
           L  +  +   +I ++L     L +L L+    + +    I       T+   S    +L 
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 115 GV--FPSFIFNKSSLQHLDFSRNTLS--GEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           G   F  F ++ +SL+ L   +      G   + I      ++    + +          
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ--GEIPREFGNLAELEQMS 228
           S  +    L  + N  +  V ++ G+LT+L  L L  N+L+   +I      +  L+Q+ 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 229 LAENNLQALL 238
           +++N++    
Sbjct: 381 ISQNSVSYDE 390

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
            +           IL+++ N  S     DI +L+KL  L +  NR+Q      F    EL
Sbjct: 18  DLSQKT------TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 225 EQMSLAENNLQAL 237
           E + L+ N L  +
Sbjct: 72  EYLDLSHNKLVKI 84

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 35/191 (18%), Positives = 76/191 (39%), Gaps = 17/191 (8%)

Query: 53  HKVTALNISGLNLT-GTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE 110
           +++  + +    L    I +     +  L  + ++   ++ +IP  +  +  L ++    
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDG 201

Query: 111 NQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
           N++T V  +      ++L  L  S N++S  +     ++ P L  L+L+ N L   +P  
Sbjct: 202 NKITKV-DAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGG 258

Query: 170 LSNCTYLRILSLAYNDFSG------AVPKDIGNLTKLMGLYLGRNRLQ-GEIPRE-FGNL 221
           L++  Y++++ L  N+ S         P          G+ L  N +Q  EI    F  +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 222 AELEQMSLAEN 232
                + L   
Sbjct: 319 YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 13/187 (6%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQL 113
              L++    +T        NL +L +L L  N++S  I    F     L+ +   +NQL
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL 112

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH-GGIPS-TLS 171
             + P  +    +LQ L    N ++ ++  ++ + L  +  + L  N L   GI +    
Sbjct: 113 KEL-PEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 172 NCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLA 230
               L  + +A  + +  +P+  G    L  L+L  N++  ++       L  L ++ L+
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 231 ENNLQAL 237
            N++ A+
Sbjct: 225 FNSISAV 231

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 2e-19
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L +    ++   P     L  L+ L LS N+L   +P  +  T  L+++   EN++T 
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITK 135

Query: 116 VFPSFIFNKSSLQHLDFSRNTL-SGEIPANICSSLPFLDYLYLSKNMLHG---GIPSTL- 170
           V  S     + +  ++   N L S  I       +  L Y+ ++   +     G+P +L 
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195

Query: 171 -----------------SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE 213
                                 L  L L++N  S      + N   L  L+L  N+L  +
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 214 IPREFGNLAELEQMSLAENNLQALLLYSFMP 244
           +P    +   ++ + L  NN+ A+    F P
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 78  SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTL 137
            L+ +  S   L   +P  +        +  + N++T +      N  +L  L    N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 138 SGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GN 196
           S +I     + L  L+ LYLSKN L             L+ L +  N+ +  V K +   
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEIT-KVRKSVFNG 143

Query: 197 LTKLMGLYLGRNRLQ-GEIPRE-FGNLAELEQMSLAENNLQAL 237
           L +++ + LG N L+   I    F  + +L  + +A+ N+  +
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 4e-19
 Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 11/194 (5%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFREN 111
            K+  L IS  +L   IP  L   SSL  L +  NR+   +P  +F+    +  +    N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN 157

Query: 112 QLTGV-FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
            L    F    F+   L +L  S   L+  IP ++  +L   + L+L  N +       L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETL---NELHLDHNKIQAIELEDL 213

Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLA 230
              + L  L L +N         +  L  L  L+L  N+L   +P    +L  L+ + L 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 231 ENNLQALLLYSFMP 244
            NN+  + +  F P
Sbjct: 273 TNNITKVGVNDFCP 286

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 6e-18
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 12/186 (6%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT-YTLKDVSFRENQL 113
            T L++   +++         L  L +L L  N++S  I    F+    L+ +   +N L
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML-HGGIPSTLSN 172
             + P  +   SSL  L    N +  ++P  + S L  ++ + +  N L + G      +
Sbjct: 115 VEI-PPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 173 CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAE 231
              L  L ++    +  +PKD+     L  L+L  N++Q  I  E     ++L ++ L  
Sbjct: 171 GLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGH 226

Query: 232 NNLQAL 237
           N ++ +
Sbjct: 227 NQIRMI 232

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 10/187 (5%)

Query: 53  HKVTALNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111
             + AL +    ++  I  +    L  LQ L +S N L   IP  + ++  L ++   +N
Sbjct: 78  QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDN 133

Query: 112 QLTGVFPSFIFNKSSLQHLDFSRNTL-SGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           ++  V         ++  ++   N L +          L  L+YL +S+  L G      
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP 192

Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLA 230
                L  L L +N       +D+   +KL  L LG N+++         L  L ++ L 
Sbjct: 193 ET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 231 ENNLQAL 237
            N L  +
Sbjct: 250 NNKLSRV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 7e-16
 Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 18/191 (9%)

Query: 53  HKVTALNISGLNLTGT-IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN 111
             +  + + G  L  +       +   L  L +S  +L+  IP  +  T  L ++    N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPET--LNELHLDHN 203

Query: 112 QLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           ++  +       + S L  L    N +   I     S LP L  L+L  N L   +P+ L
Sbjct: 204 KIQAI-ELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR-VPAGL 260

Query: 171 SNCTYLRILSLAYNDFSGAVPKDI-------GNLTKLMGLYLGRNRLQ-GEIPRE-FGNL 221
            +   L+++ L  N+ +  V  +               G+ L  N +   E+    F  +
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 222 AELEQMSLAEN 232
            +   +     
Sbjct: 320 TDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 13/189 (6%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLT 114
             +  S L L   +P ++        LDL  N +S  +    F     L  +    N+++
Sbjct: 36  RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS 91

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
            +          LQ L  S+N L  EIP N+ SS   L  L +  N +        S   
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLR 147

Query: 175 YLRILSLAYNDF-SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
            +  + +  N   +        +  KL  L +   +L   IP+       L ++ L  N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNK 204

Query: 234 LQALLLYSF 242
           +QA+ L   
Sbjct: 205 IQAIELEDL 213

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.5 bits (168), Expect = 8e-14
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 12/163 (7%)

Query: 78  SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTL 137
            L+ +  S   L  ++P  I        +  + N ++ +          L  L    N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 138 SGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GN 196
           S +I     S L  L  LY+SKN L    P+  S+   L  L +  N     VPK +   
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIR-KVPKGVFSG 145

Query: 197 LTKLMGLYLGRNRLQGEI--PREFGNLAELEQMSLAENNLQAL 237
           L  +  + +G N L+     P  F  L +L  + ++E  L  +
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 17/166 (10%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQ 112
           K+  L IS   LT  IP  L    +L  L L  N++  +I       Y+ L  +    NQ
Sbjct: 173 KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST--- 169
           +  +    +    +L+ L    N LS  +PA +   L  L  +YL  N +   +      
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITK-VGVNDFC 285

Query: 170 ----LSNCTYLRILSLAYN--DFSGAVPKDIGNLTKLMGLYLGRNR 209
                    Y   +SL  N   +    P     +T  + +  G  +
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND 185
            L+ +  S   L   +P  I    P    L L  N +            +L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQALLLYSF 242
            S    K    L KL  LY+ +N L  EIP     +L EL    + +N ++ +    F
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVEL---RIHDNRIRKVPKGVF 143

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.6 bits (209), Expect = 5e-19
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 15/182 (8%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
           T L++S  NL           +SLQ+L LS NRL+  +  ++  +  L   +   N L+ 
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSYNLLS- 205

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
                +    +++ LD S N+++  +   +   L  L    L  N L     + L N   
Sbjct: 206 ----TLAIPIAVEELDASHNSIN-VVRGPVNVELTILK---LQHNNLTD--TAWLLNYPG 255

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L  + L+YN+    +      + +L  LY+  NRL   +      +  L+ + L+ N+L 
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

Query: 236 AL 237
            +
Sbjct: 315 HV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.2 bits (208), Expect = 7e-19
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 49  DVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVS 107
           D+  +    +      +     + L +   ++ L+L+  ++   I +  F     ++ + 
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLY 105

Query: 108 FRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP 167
              N +  + P    N   L  L   RN LS  +P  I  + P L  L +S N L     
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQM 227
            T    T L+ L L+ N  +     D+  +  L    +  N L             +E++
Sbjct: 165 DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 216

Query: 228 SLAENNLQAL 237
             + N++  +
Sbjct: 217 DASHNSINVV 226

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.9 bits (189), Expect = 2e-16
 Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 26/207 (12%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQ 112
           +V  LN++ L +            ++Q L + FN +   +P  +F     L  +    N 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134

Query: 113 LTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH----GGIP 167
           L+   P  IF+    L  L  S N L   I  +   +   L  L LS N L       IP
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 192

Query: 168 S------------TLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP 215
           S            TL+    +  L  ++N  +  V   +    +L  L L  N L  +  
Sbjct: 193 SLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA 248

Query: 216 REFGNLAELEQMSLAENNLQALLLYSF 242
               N   L ++ L+ N L+ ++ + F
Sbjct: 249 -WLLNYPGLVEVDLSYNELEKIMYHPF 274

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.7 bits (186), Expect = 6e-16
 Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 5/177 (2%)

Query: 68  TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSL 127
            I S L        + +              T    K V+F+ + +  +  + + +   +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187
           + L+ +   +  EI     +    +  LY+  N +    P    N   L +L L  ND S
Sbjct: 78  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 188 GAVPKDI-GNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQALLLYSF 242
            ++P+ I  N  KL  L +  N L+  I  + F     L+ + L+ N L  + L   
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 191

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           +++S   L   +      +  L+ L +S NRL  ++        TLK +    N L  V 
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV- 316

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163
                    L++L    N++   +  +   +   L  L LS N   
Sbjct: 317 ERNQPQFDRLENLYLDHNSIV-TLKLS---THHTLKNLTLSHNDWD 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.8 bits (207), Expect = 1e-18
 Identities = 48/198 (24%), Positives = 74/198 (37%), Gaps = 38/198 (19%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L I G  LT ++P     L   Q L +S N+L+ S+P+       L  +    NQLT 
Sbjct: 124 CKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLA-SLPALPSE---LCKLWAYNNQLTS 175

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICS----------------SLPFLDYLYLSK 159
           +        S LQ L  S N L+  +P                         L  L +S 
Sbjct: 176 LPMLP----SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG 230

Query: 160 NMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFG 219
           N L   +P   S    L+ L ++ N  + ++P     L  L    + RN+L   +P    
Sbjct: 231 NRL-TSLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLI 281

Query: 220 NLAELEQMSLAENNLQAL 237
           +L+    ++L  N L   
Sbjct: 282 HLSSETTVNLEGNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.8 bits (207), Expect = 1e-18
 Identities = 46/182 (25%), Positives = 66/182 (36%), Gaps = 29/182 (15%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L +SG  LT ++P     L  L         L             L  +    NQLT 
Sbjct: 84  RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTS 135

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +          LQ L  S N L+  +PA        L  L+   N L   +P   S    
Sbjct: 136 LPVLP----PGLQELSVSDNQLA-SLPALPSE----LCKLWAYNNQLT-SLPMLPSG--- 182

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L+ LS++ N  + ++P     L K   L+   NRL   +P     L EL    ++ N L 
Sbjct: 183 LQELSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLKEL---IVSGNRLT 234

Query: 236 AL 237
           +L
Sbjct: 235 SL 236

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 28/182 (15%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             LN+    LT T+P  L     + +L +  N L+ S+P+       L+ +    NQLT 
Sbjct: 43  AVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT- 94

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
             P        L         L   +P+ +C        L++  N L   +P        
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCK-------LWIFGNQLT-SLPVLPPG--- 142

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L+ LS++ N  + ++P     L K   L+   N+L   +P     L EL   S+++N L 
Sbjct: 143 LQELSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA 194

Query: 236 AL 237
           +L
Sbjct: 195 SL 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.1 bits (187), Expect = 4e-16
 Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 29/184 (15%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +T L I   NLT ++P+    L   ++L++S N+L+ S+P        L   S     L
Sbjct: 62  HITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
             +        S L  L    N L+  +P         L  L +S N L   +P+  S  
Sbjct: 117 PALP-------SGLCKLWIFGNQLT-SLPVLPPG----LQELSVSDNQL-ASLPALPSEL 163

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
             L   +   N  + ++P     L +   L +  N+L   +P     L +L       N 
Sbjct: 164 CKLWAYN---NQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSELYKLW---AYNNR 212

Query: 234 LQAL 237
           L +L
Sbjct: 213 LTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.1 bits (187), Expect = 4e-16
 Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 22/175 (12%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           ++  L      LT ++P     L   Q L +S N+L+ S+P+       L  +    N+L
Sbjct: 162 ELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSE---LYKLWAYNNRL 213

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T   P+     S L+ L  S N L+  +P         L  L +S N L   +P   S  
Sbjct: 214 T-SLPALP---SGLKELIVSGNRLT-SLPVLPSE----LKELMVSGNRL-TSLPMLPSG- 262

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMS 228
             L  LS+  N  +  +P+ + +L+    + L  N L     +    +      S
Sbjct: 263 --LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.2 bits (177), Expect = 9e-15
 Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 24/162 (14%)

Query: 76  LSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN 135
            +    L++  + L+ ++P  +     +  +   +N LT   P+       L+ L+ S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG 195
            L+  +P      L  L         L    P+  S    L  L +  N  + ++P    
Sbjct: 92  QLT-SLPVLP-PGLLELSIFSNPLTHL----PALPSG---LCKLWIFGNQLT-SLPVLPP 141

Query: 196 NLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
            L +   L +  N+L   +P     L +L       N L +L
Sbjct: 142 GLQE---LSVSDNQLA-SLPALPSELCKLW---AYNNQLTSL 176

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 21/183 (11%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L++S   L  ++P+    L  L + +     L             LK++    N+LT 
Sbjct: 184 QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG-------LKELIVSGNRLTS 235

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
             P      S L+ L  S N L+  +P         L  L + +N L   +P +L + + 
Sbjct: 236 -LPVLP---SELKELMVSGNRLT-SLPMLPSG----LLSLSVYRNQLTR-LPESLIHLSS 285

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNR---LQGEIPREFGNLAELEQMSLAEN 232
              ++L  N  S    + +  +T   G      R        PRE   L       L   
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

Query: 233 NLQ 235
              
Sbjct: 346 REG 348

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 11/106 (10%)

Query: 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPK 192
            R  +  ++ A + +    L+   + ++ L   +P  L     +  L +  N+ + ++P 
Sbjct: 26  GRAAVVQKMRACLNNGNAVLN---VGESGLTT-LPDCLPAH--ITTLVIPDNNLT-SLPA 78

Query: 193 DIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL 238
               L  L    +  N+L   +P     L EL   S    +L AL 
Sbjct: 79  LPPELRTL---EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP 120

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 15/182 (8%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L+IS   ++    S L  L++L+SL  + N++S   P  I T   L ++S   NQL  
Sbjct: 180 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 235

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +    + + ++L  LD + N +S   P    S L  L  L L  N +     S L+  T 
Sbjct: 236 I--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--ISPLAGLTA 288

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L  L L  N         I NL  L  L L  N +    P    +L +L+++    N + 
Sbjct: 289 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344

Query: 236 AL 237
            +
Sbjct: 345 DV 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.3 bits (204), Expect = 3e-18
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 15/184 (8%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            + +L  +   ++   P  LG L++L  L L+ N+L       + +   L D+    NQ+
Sbjct: 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 255

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           + + P  +   + L  L    N +S   P    + L  L  L L++N L     S +SN 
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLED--ISPISNL 308

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
             L  L+L +N+ S   P  + +LTKL  L+   N++         NL  +  +S   N 
Sbjct: 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 234 LQAL 237
           +  L
Sbjct: 365 ISDL 368

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.9 bits (203), Expect = 4e-18
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 15/189 (7%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +  L+++G  L       L +L++L  LDL+ N++S   P  +     L ++    NQ+
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           + + P  +   ++L +L+ + N L    P    S+L  L YL L  N +    P  +S+ 
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP--VSSL 330

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L+ L    N  S      + NLT +  L  G N++    P    NL  + Q+ L +  
Sbjct: 331 TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386

Query: 234 LQALLLYSF 242
                +   
Sbjct: 387 WTNAPVNYK 395

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 16/184 (8%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           +VT L    L +       +  L++L  ++ S N+L+   P    T   L D+    NQ+
Sbjct: 47  QVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITPLKNLT--KLVDILMNNNQI 102

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
             + P  + N ++L  L    N ++   P     +L  L+ L LS N +     S LS  
Sbjct: 103 ADITP--LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD--ISALSGL 155

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L+ LS           K + NLT L  L +  N++          L  LE +    N 
Sbjct: 156 TSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQ 210

Query: 234 LQAL 237
           +  +
Sbjct: 211 ISDI 214

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 13/179 (7%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
           T L+++   ++   P  L  L+ L  L L  N++S   P  +     L ++   ENQL  
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +  S I N  +L +L    N +S   P    SSL  L  L+   N +     S+L+N T 
Sbjct: 302 I--SPISNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVSD--VSSLANLTN 354

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           +  LS  +N  S   P  + NLT++  L L              N++    +      L
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.4 bits (186), Expect = 5e-16
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 14/178 (7%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT 114
           + +  I+       I      L+      L    ++ ++         +  +      + 
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGIK 59

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
                 +   ++L  ++FS N L+   P     +L  L  + ++ N +    P  L+N T
Sbjct: 60  S--IDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
            L  L+L  N  +      + NLT L  L L  N +          L  L+Q+S    
Sbjct: 113 NLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 8/138 (5%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           K+  L      ++    S L NL+++  L    N++S   P A  T   +  +   +   
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLT--RITQLGLNDQAW 387

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T    ++   K+++   +  +N     I     S         ++ N+            
Sbjct: 388 TNAPVNY---KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTF 443

Query: 174 TYLRILSLAYNDFSGAVP 191
           +    +      FSG V 
Sbjct: 444 SQPVTIGKGTTTFSGTVT 461

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 2e-18
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 9/184 (4%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQ 112
           ++    +S  +          + SS   L+ + N  +        +T   L+ +  + N 
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNG 388

Query: 113 LTGVFPSF--IFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           L   F       N SSL+ LD S N+L+       C+    +  L LS NML G +   L
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 171 SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSL 229
                +++L L  N    ++PKD+ +L  L  L +  N+L+  +P   F  L  L+ + L
Sbjct: 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504

Query: 230 AENN 233
            +N 
Sbjct: 505 HDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 30/208 (14%), Positives = 70/208 (33%), Gaps = 14/208 (6%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG-------SIPSAIFTTYTL 103
                T L++     +        ++++L  L LS  +L+        +  S +    TL
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251

Query: 104 KDVSFRENQLTGVFPSFIFN---KSSLQHLDFSRNTLSG----EIPANICSSLPFLDYLY 156
            +V+ +  + T      +F       +++L+    T++     E      ++L  L   +
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

Query: 157 LSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPR 216
           +   +      +  S    + I  L+ +D          + +    L   +N     + +
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 217 EFGNLAELEQMSLAENNLQALLLYSFMP 244
               L  L+ + L  N L+     + M 
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMT 399

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 32/190 (16%), Positives = 70/190 (36%), Gaps = 14/190 (7%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT---YTLKDVSFRENQLT 114
           LN        T  S+L    +L ++ L     +      +F       ++ ++     +T
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 115 GV--FPSFIFNKSSLQHLDFS--RNTLSGEIPANICSSLPFLDYLYLSKN---MLHGGIP 167
                  F +++++L+ L     +N +       + S    ++   LS +    +H   P
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQM 227
            + S+      L+   N F+ +V +    L +L  L L RN L+    +       +  +
Sbjct: 350 PSPSS---FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSL 405

Query: 228 SLAENNLQAL 237
              + +L +L
Sbjct: 406 ETLDVSLNSL 415

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 5/190 (2%)

Query: 55  VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQL 113
             AL++S  +++      +  LS L+ L LS NR+  S+   +F     L+ +    N+L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
             +    +   +SL+HLD S N            +L  L +L LS           +++ 
Sbjct: 113 QNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
               IL    +        +   +     L+L  +       +   ++  L  + L+   
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 234 LQALLLYSFM 243
           L        M
Sbjct: 230 LNDENCQRLM 239

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 9/164 (5%)

Query: 75  NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSR 134
            ++S   ++     L+ ++P  +        +   EN L     + +   + L  L+  R
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 135 NTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI 194
             L+ ++  +   +LP L  L LS N L   +P        L +L +++N  + ++P   
Sbjct: 65  AELT-KLQVD--GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 195 -GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
              L +L  LYL  N L+   P       +LE++SLA NNL  L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 6e-15
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLT 114
           T L++S   L     + L   + L  L+L    L+  +   +  T   L  +    NQL 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDLSHNQLQ 90

Query: 115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT 174
            + P       +L  LD S N L+  +P      L  L  LYL  N L    P  L+   
Sbjct: 91  SL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 175 YLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
            L  LSLA N+ +  +P  +   L  L  L L  N L   IP+ F     L    L  N
Sbjct: 149 KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 79.6 bits (197), Expect = 6e-18
 Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 26/208 (12%)

Query: 41  CNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT 100
           CN    + D  S K+TA           IPS     +  + LDL  N+LS S+PS  F  
Sbjct: 14  CNNNKNSVDCSSKKLTA-----------IPS--NIPADTKKLDLQSNKLS-SLPSKAFHR 59

Query: 101 YT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158
            T L+ +   +N+L  + P+ IF +  +L+ L  + N L   +P  +   L  L  L L 
Sbjct: 60  LTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 159 KNMLH---GGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEI 214
           +N L      +  +L+    L  LSL YN+   ++PK +   LT L  L L  N+L+   
Sbjct: 118 RNQLKSLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP 173

Query: 215 PREFGNLAELEQMSLAENNLQALLLYSF 242
              F  L EL+ + L  N L+ +   +F
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAF 201

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 1e-17
 Identities = 41/185 (22%), Positives = 62/185 (33%), Gaps = 12/185 (6%)

Query: 35  NTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP 94
            + A    W           +  L+I+  +       Q+    +L +LDLS N   G   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 95  SAIFTTY----TLKDVSFRENQLT---GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICS 147
                      TL+ ++ R   +    GV  +    +  LQ LD S N+L     A  C 
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 148 SLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGR 207
               L+ L LS   L        +    L +L L+YN      P     L ++  L L  
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDR-NPS-PDELPQVGNLSLKG 305

Query: 208 NRLQG 212
           N    
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 3e-14
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 18/203 (8%)

Query: 52  SHKVTALNISGLNLTGTIPSQ---LGNLSSLQSLDLSFNRLSGSIPSAIF--TTYTLKDV 106
           S  +  L +    +   I      +  +S LQ L L    ++G+ P  +   T   L  +
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 107 SFRENQLTGVFPS----FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML 162
           + R                + K  L+ L  ++               P L  L LS N  
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPE 185

Query: 163 HGGIPSTLSNC----TYLRILSLAYNDF---SGAVPKDIGNLTKLMGLYLGRNRLQGEIP 215
            G      + C      L++L+L        SG          +L GL L  N L+    
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 216 RE-FGNLAELEQMSLAENNLQAL 237
                  ++L  ++L+   L+ +
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQV 268

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 10/188 (5%)

Query: 59  NISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGVF 117
             S  +L  +IPS L    +++SLDLS NR++  I ++       L+ +    N +    
Sbjct: 37  KGSSGSLN-SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TI 91

Query: 118 PSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP-STLSNCTY 175
               F+   SL+HLD S N LS  + ++    L  L +L L  N        S  S+ T 
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 176 LRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
           L+IL +   D    + +     LT L  L +  + LQ   P+   ++  +  + L     
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 235 QALLLYSF 242
             LL    
Sbjct: 211 ILLLEIFV 218

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 13/175 (7%)

Query: 71  SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNKSSLQH 129
           S   +L+ LQ L +        I    F   T L+++    + L    P  + +  ++ H
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG--------GIPSTLSNCTYLRILSL 181
           L          +          ++ L L    L          G  ++L      R + +
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 182 AYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQ 235
                   V K +  ++ L+ L   RN+L+  +P   F  L  L+++ L  N   
Sbjct: 262 TDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 22/216 (10%)

Query: 40  VCNWTGVTCDVHSHKVTA-----------LNISGLNLTGTIPSQLGNLSSLQSLDLSFNR 88
           V     +T                     L++S   L         +   LQ LDLS   
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63

Query: 89  LSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANIC 146
           +  +I    + + + L  +    N +  +     F+  SSLQ L      L+  +     
Sbjct: 64  IQ-TIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLA-SLENFPI 120

Query: 147 SSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKL----M 201
             L  L  L ++ N++    +P   SN T L  L L+ N        D+  L ++    +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
            L L  N +    P  F  +  L++++L  N L+++
Sbjct: 181 SLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.6 bits (184), Expect = 4e-16
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 13/185 (7%)

Query: 56  TALNISGLNLTGTIPSQL-GNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQL 113
             L++S   +  TI      +LS L +L L+ N +  S+    F+  + L+ +   E  L
Sbjct: 55  QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

Query: 114 TGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKN---MLHGGIPST 169
             +  +F      +L+ L+ + N +         S+L  L++L LS N    ++      
Sbjct: 113 ASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 170 LSNCTYLRI-LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQM 227
           L     L + L L+ N  +  +        +L  L L  N+L+  +P   F  L  L+++
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKI 229

Query: 228 SLAEN 232
            L  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 74  GNLSSLQSLDLSFNRLSGSIPSA-IFTTYT-LKDVSFRENQLT----GVFPSFIFNKSSL 127
           G+L +L+ L+++ N +  S      F+  T L+ +    N++                  
Sbjct: 121 GHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186
             LD S N ++  I       +  L  L L  N L           T L+ + L  N +
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 38/200 (19%), Positives = 75/200 (37%), Gaps = 19/200 (9%)

Query: 38  APVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAI 97
             +C+ +         KVT            IPS L    +   L     +L   I    
Sbjct: 4   HRICHCSNRVFLCQESKVTE-----------IPSDL--PRNAIELRFVLTKLR-VIQKGA 49

Query: 98  FTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYL 155
           F+ +  L+ +   +N +  V  + +F+    L  +   +      I      +LP L YL
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 156 YLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI--GNLTKLMGLYLGRNRLQGE 213
            +S   +         +     +L +  N     + ++   G   + + L+L +N +Q E
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168

Query: 214 IPREFGNLAELEQMSLAENN 233
           I     N  +L++++L++NN
Sbjct: 169 IHNSAFNGTQLDELNLSDNN 188

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 6e-14
 Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 11/191 (5%)

Query: 53  HKVTALNISGLNLTGTIPSQ-LGNLSSLQSLDLS-FNRLSGSIPSAIFTTYT-LKDVSFR 109
             +  + IS  ++   I +    NL  L  + +   N L   I    F     L+ +   
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLIS 112

Query: 110 ENQLTGVFPSFIFNKS-SLQHLDFSRNTLSGEIPANICSSLPF-LDYLYLSKNMLHGGIP 167
              +    P      S     LD   N     I  N    L F    L+L+KN +     
Sbjct: 113 NTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171

Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQ 226
           S  +      +     N+            +  + L + R R+   +P     NL +L  
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRA 230

Query: 227 MSLAENNLQAL 237
            S    NL+ L
Sbjct: 231 RST--YNLKKL 239

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 4e-10
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 9/160 (5%)

Query: 53  HKVTALNISGLNLTGTIPSQL-GNLSSLQSLDLSFNRLSGSIPSAIFT--TYTLKDVSFR 109
             +  L IS   +   +P     +      LD+  N    +I    F   ++    +   
Sbjct: 104 PNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPST 169
           +N +  +  +  FN + L  L+ S N    E+P ++         L +S+  +H      
Sbjct: 163 KNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221

Query: 170 LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNR 209
           L N   LR  S             +  L  LM   L    
Sbjct: 222 LENLKKLRARSTYNLKKLPT----LEKLVALMEASLTYPS 257

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 20/183 (10%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             L +S   L   +P  L N S L+ +D+  N L   +P    +   L+ ++   NQL  
Sbjct: 134 EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE- 186

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
             P    N   L  +    N+L  ++P    S    L+ +    N+L       L N  +
Sbjct: 187 ELPELQ-NLPFLTAIYADNNSLK-KLPDLPLS----LESIVAGNNILE--ELPELQNLPF 238

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L  +    N     +P    +L  L    +  N L  ++P    +L  L+      + L 
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLT-DLPELPQSLTFLDVSENIFSGLS 293

Query: 236 ALL 238
            L 
Sbjct: 294 ELP 296

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.7 bits (179), Expect = 5e-15
 Identities = 42/182 (23%), Positives = 67/182 (36%), Gaps = 27/182 (14%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
            ++      L      +L NL  L ++    N L  ++P       +L+ ++ R+N LT 
Sbjct: 218 ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLTD 271

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
             P       SL  LD S N  S      +    P L YL  S N +   +     +   
Sbjct: 272 -LPELP---QSLTFLDVSENIFS-----GLSELPPNLYYLNASSNEIR-SLCDLPPS--- 318

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L  L+++ N     +P     L +   L    N L  E+P    NL +L    +  N L+
Sbjct: 319 LEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQL---HVEYNPLR 370

Query: 236 AL 237
             
Sbjct: 371 EF 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 37/195 (18%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
                 NLT  +P +  N+ S      +++    + P        +     R+       
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR--- 71

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR 177
                       L+ +   LS  +P       P L+ L  S N L   +P    +   L 
Sbjct: 72  --------QAHELELNNLGLS-SLPELP----PHLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 178 ILSLAYNDFSGAVPK---------------DIGNLTKLMGLYLGRNRLQGEIPREFGNLA 222
           + +      S   P                ++ N + L  + +  N L+ ++P    +L 
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLE 176

Query: 223 ELEQMSLAENNLQAL 237
            +   +   N L+ L
Sbjct: 177 FI---AAGNNQLEEL 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 25/182 (13%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             +      L   +P  L NL  L ++    N L   +P       +L+ +    N L  
Sbjct: 176 EFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE- 228

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
                + N   L  +    N L   +P    S    L+ L +  N L   +P    + T+
Sbjct: 229 -ELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEALNVRDNYLT-DLPELPQSLTF 281

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L +    ++       +   NL     L    N ++  +     +L EL   +++ N L 
Sbjct: 282 LDVSENIFSGL----SELPPNLYY---LNASSNEIR-SLCDLPPSLEEL---NVSNNKLI 330

Query: 236 AL 237
            L
Sbjct: 331 EL 332

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
             +++   +L   +P    +L   + +    N+L   +P  +     L  +    N L  
Sbjct: 156 KIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKK 209

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +         SL+ +    N L  E+P     +LPFL  +Y   N+L   +P    +   
Sbjct: 210 LPDLP----LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLK-TLPDLPPSLEA 261

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L +      D     P+   +LT L       + L    P        L  ++ + N ++
Sbjct: 262 LNVRDNYLTDL----PELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR 310

Query: 236 AL 237
           +L
Sbjct: 311 SL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 42/213 (19%), Positives = 68/213 (31%), Gaps = 50/213 (23%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            + ALN+    LT  +P    +L+ L   +  F+ LS   P+       L  ++   N++
Sbjct: 258 SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEI 309

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
             +         SL+ L+ S N L  E+PA        L+ L  S N L   +P    N 
Sbjct: 310 RSLCDLP----PSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLAE-VPELPQNL 359

Query: 174 TYLRIL---------------SLAYNDFSGAVPKDIGNLTKL-----------------M 201
             L +                 L  N     VP+   NL +L                  
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419

Query: 202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
            L +   R+            +LE      ++ 
Sbjct: 420 DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 18/146 (12%)

Query: 93  IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152
           I     +   L++     + LT   P    N  S      + +      P         +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREM 60

Query: 153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212
               L   +                 L L     S ++P+   +L  L       N L  
Sbjct: 61  AVSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT- 104

Query: 213 EIPREFGNLAELEQMSLAENNLQALL 238
           E+P    +L  L   +     L  L 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLP 130

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 18/134 (13%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           ++  L  S  +L   +P    NL   + L + +N L    P    +   L+      + L
Sbjct: 338 RLERLIASFNHLA-EVPELPQNL---KQLHVEYNPLR-EFPDIPESVEDLR----MNSHL 388

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
             V         +L+ L    N L  E P    S    ++ L ++   +           
Sbjct: 389 AEVPELP----QNLKQLHVETNPLR-EFPDIPES----VEDLRMNSERVVDPYEFAHETT 439

Query: 174 TYLRILSLAYNDFS 187
             L      ++   
Sbjct: 440 DKLEDDVFEHHHHH 453

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +T + ++ +N+T      +    +++ L ++    +    + I     L+ +      +
Sbjct: 45  SLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDV 100

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T      +   +SL  LD S +     I   I ++LP ++ + LS N     I   L   
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDI-MPLKTL 158

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE 213
             L+ L++ ++         I +  KL  LY     + G+
Sbjct: 159 PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 9e-15
 Identities = 27/175 (15%), Positives = 62/175 (35%), Gaps = 8/175 (4%)

Query: 63  LNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIF 122
           L  + T       ++SL  + L+   ++            +KD++      T    + I 
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAH--NIKDLTINNIHATNY--NPIS 85

Query: 123 NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA 182
             S+L+ L      ++ +   N+ S L  L  L +S +     I + ++    +  + L+
Sbjct: 86  GLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 183 YNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
           YN     +   +  L +L  L +  + +         +  +L Q+      +   
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 47/175 (26%), Positives = 67/175 (38%), Gaps = 12/175 (6%)

Query: 61  SGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPS 119
           S   L   +P  L   S    LDLS N LS        T  T L  +    N L  +  S
Sbjct: 26  SKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SS 81

Query: 120 FIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI 178
             F    +L++LD S N L   +   + S L  L+ L L  N +     +   +   L+ 
Sbjct: 82  EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140

Query: 179 LSLAYNDFSGAVPKDI----GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
           L L+ N  S   P ++      L KLM L L  N+L+     +   L    +  L
Sbjct: 141 LYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 5e-14
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 13/166 (7%)

Query: 55  VTALNISGLNLTGTIPSQ--LGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFREN 111
              L++S  NL+  + ++     L++L SL LS N L+  I S  F     L+ +    N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 112 QLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML---HGGIP 167
            L      F+F+   +L+ L    N +   +  N    +  L  LYLS+N +      + 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM--GLYLGRNRLQ 211
              +    L +L L+ N        D+  L   +  GLYL  N L+
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 6e-11
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
            QL  V P  +   S    LD S N LS        + L  L  L LS N L+       
Sbjct: 28  QQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84

Query: 171 SNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMS 228
                LR L L+ N     + + +  +L  L  L L  N +   + R  F ++A+L+++ 
Sbjct: 85  VPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLY 142

Query: 229 LAENNLQAL 237
           L++N +   
Sbjct: 143 LSQNQISRF 151

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.9 bits (179), Expect = 4e-15
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 7/160 (4%)

Query: 81  SLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGE 140
           +       L   +P  +     +  V    N +  +  +       LQ L   + T    
Sbjct: 14  NAICINRGLH-QVPE-LPAH--VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV 69

Query: 141 IPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF-SGAVPKDI-GNLT 198
           I  N    L  L  L L  N          +    L +L+L   +     +  +    LT
Sbjct: 70  IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129

Query: 199 KLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQAL 237
            L  L L  N ++   P   F N+     + L  N ++++
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.1 bits (164), Expect = 4e-13
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 29/161 (18%)

Query: 77  SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT 136
           S +++ DLS +++  ++  ++F+ +T                        L+ L  ++N 
Sbjct: 275 SGVKTCDLSKSKIF-ALLKSVFSHFT-----------------------DLEQLTLAQNE 310

Query: 137 LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-G 195
           ++ +I  N    L  L  L LS+N L         N   L +L L+YN    A+      
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL 368

Query: 196 NLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAENNLQ 235
            L  L  L L  N+L+  +P   F  L  L+++ L  N   
Sbjct: 369 GLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 40/195 (20%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDV-SFRENQLTGV 116
            +++   L           +S+ +LDLS N    S+    F       + S   +    +
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 117 FPSFIFNK--------------SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML 162
             SF                  S ++  D S++ +   +  ++ S    L+ L L++N  
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQN-- 309

Query: 163 HGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLA 222
                          I  +  N F G        LT L+ L L +N L     R F NL 
Sbjct: 310 --------------EINKIDDNAFWG--------LTHLLKLNLSQNFLGSIDSRMFENLD 347

Query: 223 ELEQMSLAENNLQAL 237
           +LE + L+ N+++AL
Sbjct: 348 KLEVLDLSYNHIRAL 362

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 15/206 (7%)

Query: 51  HSHKVTALNISGLNLTGTIPSQL-GNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSF 108
               +  L +        I +     LSSL  L L +N+    + +  F     L+ ++ 
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTL 110

Query: 109 RENQLTGVF-PSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI 166
            +  L G       F   +SL+ L    N +    PA+   ++     L L+ N +    
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 167 PSTLSNCTYLR----------ILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPR 216
              L N               +  +           +    T +  L L  N  +  + +
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 217 EFGNLAELEQMSLAENNLQALLLYSF 242
            F +     ++     +    +  SF
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSF 256

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 11/175 (6%)

Query: 15  LLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQL- 73
           + +L    +++  +              + G+        V   ++S   +   +   + 
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA----SGVKTCDLSKSKIF-ALLKSVF 295

Query: 74  GNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLD 131
            + + L+ L L+ N ++  I    F   T L  ++  +N L  +  S +F     L+ LD
Sbjct: 296 SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLD 353

Query: 132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF 186
            S N +   +       LP L  L L  N L           T L+ + L  N +
Sbjct: 354 LSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.1 bits (167), Expect = 4e-14
 Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 43/194 (22%)

Query: 41  CNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT 100
           C  T V C            S   L   IP  +        L L+ N  +    + IF  
Sbjct: 11  CEGTTVDC------------SNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKK 55

Query: 101 YTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKN 160
                                     L+ ++FS N ++ +I          ++ + L+ N
Sbjct: 56  LP-----------------------QLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 161 MLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPRE-F 218
            L             L+ L L  N  +  V  D    L+ +  L L  N++   +    F
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 219 GNLAELEQMSLAEN 232
             L  L  ++L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 140 EIPANICSSLPFLDYLYLSKNMLHGGIPS-TLSNCTYLRILSLAYNDFSGAVPKDIGNLT 198
           +IP +I         L L+ N       +        LR ++ + N  +          +
Sbjct: 25  KIPEHIPQYT---AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF 242
            +  + L  NRL+    + F  L  L+ + L  N +  +   SF
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 15/181 (8%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
               +     N+T T+     +L  + +L      ++ +I   +     L  +  ++NQ+
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQI 75

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T +  + + N + +  L+ S N L   + A   + L  +  L L+   +     + L+  
Sbjct: 76  TDL--APLKNLTKITELELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITD--VTPLAGL 128

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           + L++L L  N  +   P  +  LT L  L +G  ++    P    NL++L  +   +N 
Sbjct: 129 SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184

Query: 234 L 234
           +
Sbjct: 185 I 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 15/184 (8%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +T L+  G  +T TI   +  L++L  L+L  N+++   P    T   + ++    N L
Sbjct: 42  GITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLAPLKNLT--KITELELSGNPL 97

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
             V    I    S++ LD +   ++   P    + L  L  LYL  N +     S L+  
Sbjct: 98  KNVSA--IAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITN--ISPLAGL 150

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L+ LS+     S   P  + NL+KL  L    N++  +I     +L  L ++ L  N 
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQ 206

Query: 234 LQAL 237
           +  +
Sbjct: 207 ISDV 210

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 13/165 (7%)

Query: 73  LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132
              L++   +    + ++ ++  A      +  +S     +T +    +   ++L  L+ 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPK 192
             N ++ ++      +L  +  L LS N L     S ++    ++ L L     +   P 
Sbjct: 71  KDNQIT-DLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 193 DIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
            +  L+ L  LYL  N++   I      L  L+ +S+    +  L
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDL 166

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 71  SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130
           + L NL+ +  L+LS N L      A     ++K +     Q+T V P  +   S+LQ L
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQ--SIKTLDLTSTQITDVTP--LAGLSNLQVL 134

Query: 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV 190
               N ++  I     + L  L YL +    +     + L+N + L  L    N  S   
Sbjct: 135 YLDLNQIT-NISPL--AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDIS 189

Query: 191 PKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           P  + +L  L+ ++L  N++    P    N + L  ++L    + 
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 13/181 (7%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           K+T L +SG  L       +  L S+++LDL+  +++   P A  +   L+ +    NQ+
Sbjct: 86  KITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSN--LQVLYLDLNQI 141

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T +  S +   ++LQ+L      +S   P    ++L  L  L    N +     S L++ 
Sbjct: 142 TNI--SPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISD--ISPLASL 194

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
             L  + L  N  S   P  + N + L  + L    +  +      NL     +      
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

Query: 234 L 234
            
Sbjct: 253 P 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 15/189 (7%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +  +  +  ++  ++   +  L ++  L L+ N+L+  I   +     L  +   EN++
Sbjct: 44  SIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKI 99

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
             +  S + +   L+ L    N +S +I       LP L+ LYL  N +     + LS  
Sbjct: 100 KDL--SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKIT--DITVLSRL 152

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L  LSL  N  S  VP  +  LTKL  LYL +N +     R    L  L+ + L    
Sbjct: 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQE 208

Query: 234 LQALLLYSF 242
                +   
Sbjct: 209 CLNKPINHQ 217

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 1e-12
 Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 15/181 (8%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           +    N+   ++T  +      L+S+  +  + + +  S+   I     +  +    N+L
Sbjct: 22  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 77

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T + P  + N  +L  L    N +  ++ +     L  L  L L  N +     + L + 
Sbjct: 78  TDIKP--LTNLKNLGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHNGIS--DINGLVHL 130

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
             L  L L  N  +      +  LTKL  L L  N++  +I      L +L+ + L++N+
Sbjct: 131 PQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNH 186

Query: 234 L 234
           +
Sbjct: 187 I 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 59  NISGLNLTG---TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
            +  L L     T  + L  L+ L +L L  N++S  I   +     L+++   +N ++ 
Sbjct: 132 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHISD 189

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +    +    +L  L+        +   +  S+L   + +  +   L    P  +S+   
Sbjct: 190 L--RALAGLKNLDVLELFSQECLNKPINHQ-SNLVVPNTVKNTDGSLV--TPEIISDDGD 244

Query: 176 LRILSLAYN 184
               ++ ++
Sbjct: 245 YEKPNVKWH 253

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 8/157 (5%)

Query: 78  SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNT 136
           S   +D     L+  IP+ +  T T   +    N +  + P   F+    L+ +D S N 
Sbjct: 12  SNNIVDCRGKGLT-EIPTNLPETITEIRLEQ--NTIKVI-PPGAFSPYKKLRRIDLSNNQ 67

Query: 137 LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-G 195
           +S E+  +    L  L+ L L  N +     S       L++L L  N  +  +  D   
Sbjct: 68  IS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQ 125

Query: 196 NLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
           +L  L  L L  N+LQ      F  L  ++ M LA+N
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 140 EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLT 198
           EIP N+  ++     + L +N +    P   S    LR + L+ N  S  +  D    L 
Sbjct: 25  EIPTNLPETI---TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR 80

Query: 199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
            L  L L  N++       F  L  L+ + L  N +  L
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 15/193 (7%)

Query: 44  TGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT- 102
           TG TC   +     ++  G +L  ++PS  G  +  + LDL    L+ ++  A F   T 
Sbjct: 8   TGCTC---NEGKKEVDCQGKSLD-SVPS--GIPADTEKLDLQSTGLA-TLSDATFRGLTK 60

Query: 103 LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM 161
           L  ++   NQL  +  + +F+  + L  L  + N L+  +P  +   L  LD LYL  N 
Sbjct: 61  LTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ 118

Query: 162 LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPRE-FG 219
           L           T L+ L L  N    ++P      LT L  L L  N+LQ  +P   F 
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFD 176

Query: 220 NLAELEQMSLAEN 232
            L +L+ ++L  N
Sbjct: 177 RLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 29/147 (19%)

Query: 92  SIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF 151
           S+PS I       D+      L  +  +     + L  L+   N L   + A +   L  
Sbjct: 28  SVPSGIPADTEKLDLQS--TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTE 84

Query: 152 LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRL 210
           L  L L+ N L                          ++P  +  +LT+L  LYLG N+L
Sbjct: 85  LGTLGLANNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQL 119

Query: 211 QGEIPREFGNLAELEQMSLAENNLQAL 237
           +      F  L +L+++ L  N LQ++
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSI 146

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 11/191 (5%)

Query: 55  VTALNISGLNLTGTIPSQ-LGNLSSLQSLDLSFNRLSGSIPSAIFT-TYTLKDVSFRENQ 112
              L +   +L  TIPS    NL ++  + +S +     + S  F     +  +  R  +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 113 LTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPA-NICSSLPFLDYLYLSKNMLHGGIPSTL 170
                      +   L+ L      L    P      S      L ++ N     IP   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 171 --SNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAE-LEQ 226
               C     L L  N F+ +V     N TKL  +YL +N+    I ++ FG +      
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 227 MSLAENNLQAL 237
           + +++ ++ AL
Sbjct: 210 LDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 34/187 (18%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
               ++  ++   IPS      S Q+L L    L  +IPS  F+                
Sbjct: 14  EDFRVTCKDIQ-RIPS---LPPSTQTLKLIETHLR-TIPSHAFSNLP------------- 55

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS-TLSNCT 174
                     ++  +  S +    ++ ++   +L  + ++ +        I    L    
Sbjct: 56  ----------NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105

Query: 175 YLRILSLAYNDFSGAVPKD--IGNLTKLMGLYLGRNRLQGEIPRE-FGNL-AELEQMSLA 230
            L+ L +         P    + +      L +  N     IP   F  L  E   + L 
Sbjct: 106 LLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 231 ENNLQAL 237
            N   ++
Sbjct: 165 NNGFTSV 171

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 13/172 (7%)

Query: 70  PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH 129
              L  L   +     F+ L    P        L+     EN +           + ++ 
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL------KMEYADVRV 445

Query: 130 LDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA 189
           L  +   L+  +       L  + +L LS N L   +P  L+    L +L  + N     
Sbjct: 446 LHLAHKDLT-VLCHL--EQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-- 499

Query: 190 VPKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSLAENNLQALLLY 240
               + NL +L  L L  NRLQ     +   +   L  ++L  N+L      
Sbjct: 500 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 4e-08
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 25  DPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDL 84
           DP      +   S  +   + +  +    +V  L+++  +LT  +   L  L  +  LDL
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRV--LHLAHKDLT-VLCH-LEQLLLVTHLDL 470

Query: 85  SFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPAN 144
           S NRL  ++P A+     L+ +   +N L  V    + N   LQ L    N L       
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQ 527

Query: 145 ICSSLPFLDYLYLSKN 160
              S P L  L L  N
Sbjct: 528 PLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            VT L++S   L   +P  L  L  L+ L  S N L  ++   +     L+++    N+L
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL 520

Query: 114 TGV-FPSFIFNKSSLQHLDFSRNTLSGEIP--ANICSSLPFLDYL 155
                   + +   L  L+   N+L  E      +   LP +  +
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 16/189 (8%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
                N+   ++T  +      LS +Q+ +   + +  S+ + +     LK++    NQ+
Sbjct: 20  NAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQI 75

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           + +  S + + + L+ L  +RN L   +          L  L+L  N L      +L + 
Sbjct: 76  SDL--SPLKDLTKLEELSVNRNRLK-NLNG---IPSACLSRLFLDNNELRD--TDSLIHL 127

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
             L ILS+  N     V   +G L+KL  L L  N +          L ++  + L    
Sbjct: 128 KNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183

Query: 234 LQALLLYSF 242
                +   
Sbjct: 184 CVNEPVKYQ 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 28/167 (16%), Positives = 67/167 (40%), Gaps = 14/167 (8%)

Query: 71  SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130
                L++    +L    ++  +     +   +++ +   + +  +    +   ++L+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELS--GVQNFNGDNSNIQSLAG--MQFFTNLKEL 68

Query: 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV 190
             S N +S ++   +   L  L+ L +++N L     + + +   L  L L  N+     
Sbjct: 69  HLSHNQIS-DLS-PL-KDLTKLEELSVNRNRLK--NLNGIPSAC-LSRLFLDNNELRD-- 120

Query: 191 PKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
              + +L  L  L +  N+L+  I    G L++LE + L  N +   
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 20/184 (10%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +T+L+    ++T    + +  L+ L  L  + N ++ ++  +  T   L  ++   N+L
Sbjct: 43  TLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TLDLSQNTN--LTYLACDSNKL 97

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T +  +     + L +L+   N L+ ++     S  P L YL  ++N L       +S+ 
Sbjct: 98  TNLDVT---PLTKLTYLNCDTNKLT-KLDV---SQNPLLTYLNCARNTLT---EIDVSHN 147

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L  L    N        D+   T+L  L    N++      +      L +++   NN
Sbjct: 148 TQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNN 202

Query: 234 LQAL 237
           +  L
Sbjct: 203 ITKL 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
              +   +  T       L++L SLD   + ++        T   L  +    N +T + 
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLT--GLTKLICTSNNITTLD 80

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR 177
            S     ++L +L    N L+  +     + L  L YL    N L       +S    L 
Sbjct: 81  LS---QNTNLTYLACDSNKLT-NLDV---TPLTKLTYLNCDTNKL---TKLDVSQNPLLT 130

Query: 178 ILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
            L+ A N  +     D+ + T+L  L    N+   ++        +L  +  + N +  L
Sbjct: 131 YLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL 185

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 20/182 (10%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG 115
           T L+ S   LT  I   +  L+ L   D S N L+  +  +  +   L  +   +  L  
Sbjct: 215 TFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVSTLSK--LTTLHCIQTDLLE 268

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY 175
           +  +   + + L +          E+     +    L  L      +       LS    
Sbjct: 269 IDLT---HNTQLIYFQAEGCRKIKELDV---THNTQLYLLDCQAAGIT---ELDLSQNPK 319

Query: 176 LRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L  L L   + +     D+ + TKL  L      +Q +     G +  L     AE    
Sbjct: 320 LVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

Query: 236 AL 237
            +
Sbjct: 375 TM 376

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 40/184 (21%), Positives = 63/184 (34%), Gaps = 21/184 (11%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +  LN    N+T  +   L     L  LD S N+L+  I     T   L       N L
Sbjct: 192 LLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDVTPLT--QLTYFDCSVNPL 245

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           T +  S     S L  L   +  L  EI     + L +       K          +++ 
Sbjct: 246 TELDVS---TLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKI-----KELDVTHN 296

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L +L       +     D+    KL+ LYL    L  E+     +  +L+ +S    +
Sbjct: 297 TQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAH 350

Query: 234 LQAL 237
           +Q  
Sbjct: 351 IQDF 354

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 15/189 (7%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            +  +  +  ++  ++   +  L ++  L L+ N+L+  I   +     L  +   EN++
Sbjct: 47  SIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKV 102

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
             +  S + +   L+ L    N +S +I       LP L+ LYL  N +     + LS  
Sbjct: 103 KDL--SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKIT--DITVLSRL 155

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L  LSL  N  S  VP  +  LTKL  LYL +N +  ++ R    L  L+ + L    
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQE 211

Query: 234 LQALLLYSF 242
                +   
Sbjct: 212 CLNKPINHQ 220

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 19/183 (10%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
           +    N+   ++T  +      L+S+  +  + + +  S+   I     +  +    N+L
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 80

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC--SSLPFLDYLYLSKNMLHGGIPSTLS 171
           T + P  + N  +L  L    N +      ++     L  L  L L  N +     + L 
Sbjct: 81  TDIKP--LANLKNLGWLFLDENKVK-----DLSSLKDLKKLKSLSLEHNGIS--DINGLV 131

Query: 172 NCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAE 231
           +   L  L L  N  +      +  LTKL  L L  N++  +I      L +L+ + L++
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSK 187

Query: 232 NNL 234
           N++
Sbjct: 188 NHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 13/181 (7%)

Query: 54  KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL 113
            VT L ++G  LT      L NL +L  L L  N++   + S++     LK +S   N +
Sbjct: 69  NVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGI 124

Query: 114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNC 173
           + +  + + +   L+ L    N ++ +I     S L  LD L L  N +       L+  
Sbjct: 125 SDI--NGLVHLPQLESLYLGNNKIT-DITVL--SRLTKLDTLSLEDNQISD--IVPLAGL 177

Query: 174 TYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
           T L+ L L+ N  S    + +  L  L  L L       +      NL     +   + +
Sbjct: 178 TKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 234 L 234
           L
Sbjct: 236 L 236

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 11/161 (6%)

Query: 76  LSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFS 133
           L +++ L L  N+L   I        T L  +    NQL  + P+ +F+K ++L+ L   
Sbjct: 62  LPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLV 117

Query: 134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKD 193
            N L   +P  +   L  L YL L+ N L           T L  L L+YN    ++P+ 
Sbjct: 118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175

Query: 194 I-GNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAEN 232
           +   LT+L  L L +N+L+  +P   F  L  L+ + L +N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 17/174 (9%)

Query: 68  TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSL 127
             P      +     +L    ++ ++      +      +  + +             ++
Sbjct: 12  IFPDDA--FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL----PNV 65

Query: 128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH---GGIPSTLSNCTYLRILSLAYN 184
           ++L    N L  +I A     L  L YL L+ N L     G+   L+N   L    L  N
Sbjct: 66  RYLALGGNKLH-DISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL---VLVEN 119

Query: 185 DFSGAVPKDIGN-LTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
               ++P  + + LT L  L L  N+LQ      F  L  L ++ L+ N LQ+L
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 45/194 (23%)

Query: 41  CNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT 100
           C+ T V C   S +  +           +P+  G  ++ Q L L  N+++  +   +F +
Sbjct: 19  CSGTTVDC--RSKRHAS-----------VPA--GIPTNAQILYLHDNQIT-KLEPGVFDS 62

Query: 101 YT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158
              LK++    NQL  + P  +F+  + L  LD   N L+  +P+ +   L  L  L++ 
Sbjct: 63  LINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMC 120

Query: 159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF 218
            N L                           +P+ I  LT L  L L +N+L+      F
Sbjct: 121 CNKLT-------------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 219 GNLAELEQMSLAEN 232
             L+ L    L  N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163
             V  R  +   V P+ I   ++ Q L    N ++ ++   +  SL  L  LYL  N L 
Sbjct: 22  TTVDCRSKRHASV-PAGI--PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLG 77

Query: 164 ---GGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFG 219
               G+  +L+    L +L L  N  +  +P  +   L  L  L++  N+L  E+PR   
Sbjct: 78  ALPVGVFDSLTQ---LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE 132

Query: 220 NLAELEQMSLAENNLQ 235
            L  L  ++L +N L+
Sbjct: 133 RLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 141 IPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTK 199
           +PA I ++      LYL  N +    P    +   L+ L L  N    A+P  +  +LT+
Sbjct: 34  VPAGIPTNA---QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 200 LMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
           L  L LG N+L       F  L  L+++ +  N L  L
Sbjct: 90  LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL 127

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 30/211 (14%)

Query: 54  KVTALNISGLNLTGT----IPSQLGNLSSLQSLDLSFNRLSGSIPSAIF-----TTYTLK 104
           +   + +    LT      I S L    +L  L+L  N L       +       +  ++
Sbjct: 29  QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88

Query: 105 DVSFRENQLT----GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSL----PFLDYLY 156
            +S +   LT    GV  S +    +LQ L  S N L       +C  L      L+ L 
Sbjct: 89  KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 157 LSKNMLH----GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG-----NLTKLMGLYLGR 207
           L    L       + S L      + L+++ ND + A  + +      +  +L  L L  
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 208 NRLQGE----IPREFGNLAELEQMSLAENNL 234
             +  +    +     + A L +++L  N L
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 26/183 (14%)

Query: 54  KVTALNISGLNLT----GTIPSQLGNLSSLQSLDLSFNRLSGS-----IPSAIFTTYTLK 104
           ++ AL +    +T      +   + + +SL+ L L  N+L         P  +  +  L+
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 105 DVSFRENQLTGVFPSFIF----NKSSLQHLDFSRNTLSGEIPANICSSLPF----LDYLY 156
            +   E  +T      +      K SL+ L  + N L  E    +C +L      L+ L+
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 157 LSKNMLHG----GIPSTLSNCTYLRILSLAYNDFSGAVPKDIG-----NLTKLMGLYLGR 207
           +              S L+   +L  L ++ N    A  +++        + L  L+L  
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 208 NRL 210
             +
Sbjct: 380 CDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 31/152 (20%), Positives = 47/152 (30%), Gaps = 18/152 (11%)

Query: 77  SSLQSLDLSFNRLS-GSIPSAIFTTYTLKDVSFRENQLT----GVFPSFIFNKSSLQHLD 131
             +QSLD+    LS       +      + V   +  LT        S +    +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 132 FSRNTLSGEIPANICSSLPF----LDYLYLSKNMLH----GGIPSTLSNCTYLRILSLAY 183
              N L       +   L      +  L L    L     G + STL     L+ L L+ 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 184 NDFSGAVPKDIG-----NLTKLMGLYLGRNRL 210
           N    A  + +         +L  L L    L
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 40/184 (21%), Positives = 62/184 (33%), Gaps = 22/184 (11%)

Query: 52  SHKVTALNISGLNLTGT-IPSQLGNLSSLQSLDLSFNRLS----GSIPSAIFTTYTLKDV 106
           S  + +L+I    L+       L  L   Q + L    L+      I SA+     L ++
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 107 SFRENQLTG-----VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSL---PFLDYLYLS 158
           + R N+L       V          +Q L      L+G     + S+L   P L  L+LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 159 KNML-HGGIPS----TLSNCTYLRILSLAYNDFSGAVPKDIG----NLTKLMGLYLGRNR 209
            N+L   G+       L     L  L L Y   S A  + +            L +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 210 LQGE 213
           +   
Sbjct: 182 INEA 185

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 21/155 (13%)

Query: 54  KVTALNISGLNLT----GTIPSQLGNLSSLQSLDLSFNRLSGS-----IPSAIFTTYTLK 104
           ++  L I    +T    G +   L    SL+ L L+ N L          + +     L+
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 105 DVSFRENQLTGVFPSFIF----NKSSLQHLDFSRNTLSGEIPANICSSLPF----LDYLY 156
            +  +    T    S           L  L  S N L       +C  L      L  L+
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 157 LSKNMLH----GGIPSTLSNCTYLRILSLAYNDFS 187
           L+   +       + +TL     LR L L+ N   
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 13/124 (10%)

Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH----GGIPSTLSNCTYLRILS 180
             +Q LD     LS    A +   L     + L    L       I S L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 181 LAYNDFSGAVPKDIGNL-----TKLMGLYLGRNRLQGE----IPREFGNLAELEQMSLAE 231
           L  N+        +         K+  L L    L G     +      L  L+++ L++
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 232 NNLQ 235
           N L 
Sbjct: 123 NLLG 126

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 21/148 (14%)

Query: 54  KVTALNISGLNLTGT----IPSQLGNLSSLQSLDLSFNRLSGSIPSAI-----FTTYTLK 104
           ++ +L +   + T        S L     L  L +S NRL  +    +          L+
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 105 DVSFRENQLTGV----FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSL----PFLDYLY 156
            +   +  ++        + +    SL+ LD S N L       +  S+      L+ L 
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433

Query: 157 LSKNML----HGGIPSTLSNCTYLRILS 180
           L            + +   +   LR++S
Sbjct: 434 LYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 49/194 (25%), Positives = 76/194 (39%), Gaps = 44/194 (22%)

Query: 41  CNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT 100
           C+ T V C  +S   T+           +P+  G  +    LDL  N L           
Sbjct: 7   CSGTTVEC--YSQGRTS-----------VPT--GIPAQTTYLDLETNSLKSLPNGVFDEL 51

Query: 101 YTLKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK 159
            +L  +    N+L  + P+ +FNK +SL +L+ S N L   +P  +   L  L  L L+ 
Sbjct: 52  TSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109

Query: 160 NMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-F 218
           N L   +P                    G   K    LT+L  L L +N+L+  +P   F
Sbjct: 110 NQLQ-SLP-------------------DGVFDK----LTQLKDLRLYQNQLKS-VPDGVF 144

Query: 219 GNLAELEQMSLAEN 232
             L  L+ + L +N
Sbjct: 145 DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 141 IPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGN-LTK 199
           +P  I +      YL L  N L           T L  L L  N    ++P  + N LT 
Sbjct: 22  VPTGIPAQT---TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 200 LMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
           L  L L  N+LQ      F  L +L++++L  N LQ+L
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 29/170 (17%)

Query: 73  LGNLSSLQSLDLSFNRLSG----SIPSAIFTTYTLKDVSFRENQLT-------------G 115
           L     L ++ LS N         +   +     L+ +    N L               
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSL---PFLDYLYLSKNMLH-----GGIP 167
                  N   L+ +   RN L          +      L  + + +N +        + 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIG----NLTKLMGLYLGRNRLQGE 213
             L+ C  L++L L  N F+      +     +   L  L L    L   
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 39/200 (19%)

Query: 73  LGNLSSLQSLDLSFNRLSG----SIPSAIFTTYTLKDVSFRENQLTG----VFPSFIFNK 124
           +   S ++   L  + ++     S+ + +    ++K++    N +           I +K
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 125 SSLQHLDFSRNT---LSGEIPAN---ICSSL---PFLDYLYLSKNML--HGGIP--STLS 171
             L+  +FS      +  EIP     +  +L   P L  + LS N        P    LS
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 172 NCTYLRILSLAYNDFS-------------GAVPKDIGNLTKLMGLYLGRNRLQGE----I 214
             T L  L L  N                 AV K   N   L  +  GRNRL+       
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 215 PREFGNLAELEQMSLAENNL 234
            + F +   L  + + +N +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGI 199

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 15/131 (11%)

Query: 41  CNWTGVTCDVHSHK---------VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG 91
           C  T V C     K         VT L + G   T  +P +L N   L  +DLS NR+S 
Sbjct: 10  CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS- 67

Query: 92  SIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSL 149
           ++ +  F+  T L  +    N+L  + P   F+   SL+ L    N +S  +P    + L
Sbjct: 68  TLSNQSFSNMTQLLTLILSYNRLRCI-PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDL 125

Query: 150 PFLDYLYLSKN 160
             L +L +  N
Sbjct: 126 SALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 140 EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTK 199
            +P  I   +     LYL  N     +P  LSN  +L ++ L+ N  S    +   N+T+
Sbjct: 24  VLPKGIPRDV---TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79

Query: 200 LMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           L+ L L  NRL+   PR F  L  L  +SL  N++ 
Sbjct: 80  LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
           GIP  +        L L  N F+  VPK++ N   L  + L  NR+     + F N+ +L
Sbjct: 28  GIPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 225 EQMSLAENNLQAL 237
             + L+ N L+ +
Sbjct: 81  LTLILSYNRLRCI 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 56  TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLT 114
           + L  +           L    +L  L +   +    +          L++++  ++ L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 115 GVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH 163
            V     F+    L  L+ S N L   +       L  L  L LS N LH
Sbjct: 70  FV-APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 2/113 (1%)

Query: 99  TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158
             +    +    +              +L  L          +       L  L  L + 
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211
           K+ L    P        L  L+L++N    ++         L  L L  N L 
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 5e-05
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 166 IPSTLSNCTYLRILSLAYNDFSGAVPK-DIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAE 223
               L     L  L +        +   D+  L +L  L + ++ L+  +  + F     
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 224 LEQMSLAENNLQALLLYSFMP 244
           L +++L+ N L++L   +   
Sbjct: 82  LSRLNLSFNALESLSWKTVQG 102

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 140 EIPANICSSLPFLDYLYLSKNMLHGGIPS-TLSNCTYLRILSLAYNDFSGAVPKDIGNLT 198
           +   ++      L  LY+        +    L     LR L++  +      P       
Sbjct: 22  DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
           +L  L L  N L+    +    L+ L+++ L+ N L 
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
            + +HL  S N +  +I +++ S +  L  L L +N++   I +  +    L  L ++YN
Sbjct: 48  KACKHLALSTNNIE-KI-SSL-SGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYN 103

Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQ--GEIPREFGNLAELEQMSLAEN 232
             +      I  L  L  LY+  N++   GEI  +   L +LE + LA N
Sbjct: 104 QIA--SLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 73  LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132
           L  + +L+ L L  N +   I +      TL+++    NQ+  +  S I    +L+ L  
Sbjct: 66  LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYM 122

Query: 133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRIL 179
           S N ++     +  ++L  L+ L L+ N L+       +   Y   +
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 155 LYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI 214
           L+     +   + +TLS     + L+L+ N+        +  +  L  L LGRN ++ +I
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE--KISSLSGMENLRILSLGRNLIK-KI 85

Query: 215 PREFGNLAELEQMSLAENNLQAL 237
                    LE++ ++ N + +L
Sbjct: 86  ENLDAVADTLEELWISYNQIASL 108

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 15/121 (12%)

Query: 69  IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQ 128
           + + L  L + + L LS N +   I S++     L+ +S   N +  +  +      +L+
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKI-ENLDAVADTLE 96

Query: 129 HLDFSRN---TLSGEIPANICSSLPFLDYLYLSKNMLH--GGIPSTLSNCTYLRILSLAY 183
            L  S N   +LSG         L  L  LY+S N +   G I   L+    L  L LA 
Sbjct: 97  ELWISYNQIASLSG------IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAG 149

Query: 184 N 184
           N
Sbjct: 150 N 150

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187
             L  + N L       +   LP L  L L +N L G  P+     ++++ L L  N   
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 188 GAVPKDI-GNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLAEN 232
             +   +   L +L  L L  N++   +    F +L  L  ++LA N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPREFGNLAE 223
            IP       +   L L  N+        + G L  L+ L L RN+L G  P  F   + 
Sbjct: 26  DIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 224 LEQMSLAENNLQAL 237
           ++++ L EN ++ +
Sbjct: 80  IQELQLGENKIKEI 93

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 75  NLSSLQSLDLSFNRLSGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDF 132
            L  L  L+L  N+L+  I    F   + ++++   EN++  +  + +F     L+ L+ 
Sbjct: 52  RLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKTLNL 109

Query: 133 SRNTLSGEIPANICSSLPFLDYLYLSKN 160
             N +S  +       L  L  L L+ N
Sbjct: 110 YDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 71  SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL 130
           +Q  N    + LDL   ++   I +   T      + F +N++  +          L+ L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69

Query: 131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYN 184
             + N +   I   +  +LP L  L L+ N L   G    L++   L  L +  N
Sbjct: 70  LVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 11/122 (9%)

Query: 123 NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS--TLSNCTYLRILS 180
           N    + LD     +   +  N+ ++L   D +  S N     I           L+ L 
Sbjct: 17  NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLL 70

Query: 181 LAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ--GEIPREFGNLAELEQMSLAENNLQALL 238
           +  N            L  L  L L  N L   G++     +L  L  + +  N +    
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKK 129

Query: 239 LY 240
            Y
Sbjct: 130 HY 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 11/118 (9%)

Query: 123 NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA 182
             ++++ L       +      + +    L++L L    L     S L     L+ L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELS 79

Query: 183 YNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY 240
            N   G +      L  L  L L  N+L+     +   L  L+++      L++L L+
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK-----DISTLEPLKKLE----CLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 3/108 (2%)

Query: 54  KVTALNISGLNLT-GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ 112
            V  L +       G I        +L+ L L    L  S+ S +     LK +   EN+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENR 82

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKN 160
           + G          +L HL+ S N L           L  L  L L   
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN- 184
           +L+ L      L      +    LP L  L LS+N + GG+         L  L+L+ N 
Sbjct: 50  NLEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 185 --DFSGAVPKDIGNLTKLMGLYLGRN 208
             D S   P  +  L  L  L L   
Sbjct: 107 LKDISTLEP--LKKLECLKSLDLFNC 130

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 18/133 (13%)

Query: 41  CNWTGVTCDVHSHKVTA-----------LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRL 89
           C+ T + C  +S  +T+           L +    L          L+ L  L LS N++
Sbjct: 7   CSGTEIRC--NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI 64

Query: 90  SGSIPSAIFTTYT-LKDVSFRENQLTGVFPSFIFNK-SSLQHLDFSRNTLSGEIPANICS 147
             S+P  +F   T L  +   EN+L  + P+ +F+K + L+ L    N L   +P  I  
Sbjct: 65  Q-SLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKELALDTNQLKS-VPDGIFD 121

Query: 148 SLPFLDYLYLSKN 160
            L  L  ++L  N
Sbjct: 122 RLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 39/147 (26%)

Query: 92  SIPSAIFTTYTLKDVSFRENQLT----GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICS 147
           S+P+ I ++ T  ++    N+L     GVF       + L  L  S+N +   +P  +  
Sbjct: 21  SVPTGIPSSATRLELES--NKLQSLPHGVFDKL----TQLTKLSLSQNQIQ-SLPDGVFD 73

Query: 148 SLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLG 206
            L  L  LYL +N L                          ++P  +   LT+L  L L 
Sbjct: 74  KLTKLTILYLHENKLQ-------------------------SLPNGVFDKLTQLKELALD 108

Query: 207 RNRLQGEIPRE-FGNLAELEQMSLAEN 232
            N+L+  +P   F  L  L+++ L  N
Sbjct: 109 TNQLKS-VPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
           GIPS+         L L  N            LT+L  L L +N++Q      F  L +L
Sbjct: 25  GIPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78

Query: 225 EQMSLAENNLQAL 237
             + L EN LQ+L
Sbjct: 79  TILYLHENKLQSL 91

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 3/109 (2%)

Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
           S ++ L    +  +      +      L++L      L     + L     L+ L L+ N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDN 74

Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSLAEN 232
             SG +         L  L L  N+++          L  L+ + L   
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 3/108 (2%)

Query: 54  KVTALNISGLNLT-GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ 112
            V  L +       G +         L+ L      L+ SI + +     LK +   +N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNR 75

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKN 160
           ++G          +L HL+ S N +           L  L  L L   
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 17/150 (11%), Positives = 41/150 (27%), Gaps = 3/150 (2%)

Query: 51  HSHKVTALNISGLNLT--GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSF 108
           +   + ++ +    +           NL       L+ +         +     L  +  
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 109 RENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPS 168
                  + P      + ++ LD     L  E    +    P L+ L     +   G+  
Sbjct: 278 SYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336

Query: 169 TLSNCTYLRILSLAYNDFSGAVPKDIGNLT 198
               C  L+ L +        +  + G ++
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSF-NRLSGSIPSAIFTTYT-LKDVSF 108
              K+  L++ GL L+  I + L   S+L  L+LS  +  S      + ++ + L +++ 
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

Query: 109 RE-NQLT--GVFPSFIFNKSSLQHLDFS--RNTLSGEIPANICSSLPFLDYLYLSK-NML 162
                 T   V  +      ++  L+ S  R  L     + +    P L +L LS   ML
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235

Query: 163 HGGIPSTLSNCTYLRILSLAY-NDFSGAVPKDIGNLTKLMGLYL 205
                       YL+ LSL+   D       ++G +  L  L +
Sbjct: 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 33/155 (21%)

Query: 73  LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132
                 + SLDLS N L       +       +                   +S+  L+ 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQA--FAN-----------------TPASVTSLNL 58

Query: 133 SRNTLSGEIPANICSSLPF----LDYLYLSKNMLHG----GIPSTLSNC-TYLRILSLAY 183
           S N+L  +    +   L      +  L LS N L       +  TL+     + +L L +
Sbjct: 59  SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118

Query: 184 NDFSGAVPKDIGNL-----TKLMGLYLGRNRLQGE 213
           NDFS     +           +  L L  N L  +
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 30/189 (15%)

Query: 77  SSLQSLDLSFNRLSGSIPSAIF-----TTYTLKDVSFRENQLT-----GVFPSFIFNKSS 126
            ++  LDL +N  S    S           ++  ++ R N L       +        ++
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 127 LQHLDFSRNTLSGEIPANICSSLPF----LDYLYLSKNML-HGGIPST----LSNCTYLR 177
           +  L+   N L+ +  A +   L      +  L LS N+L             S   ++ 
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 178 ILSLAYNDFSGAVPKDIGNL----TKLMGLYLGRNRLQGEIPREFGNLAE-------LEQ 226
            L+L  N   G   +++  L      L  +YL  + ++     +   L         +  
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 227 MSLAENNLQ 235
           +      + 
Sbjct: 289 VDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 20/157 (12%)

Query: 77  SSLQSLDLSFNRLS----GSIPSAIFTTY-TLKDVSFRENQLT-----GVFPSFIFNKSS 126
           +++ SL+L  N L+      +   + +   ++  +    N L       +   F    + 
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 127 LQHLDFSRNTLSGEIPANICSSL---PFLDYLYLSKNMLHG-------GIPSTLSNCTYL 176
           +  L+   N L G    N+         L  +YL  +++          + +   N   +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 177 RILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE 213
            ++     +   +    I NL + +        L  +
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 43/307 (14%), Positives = 89/307 (28%), Gaps = 98/307 (31%)

Query: 12  QDALLALKAHITHDPTNFLA--------KNWNTSAPVCNWTGVTCDVHSHKVTALNISGL 63
           + ALL L+      P   +         K W     VC    V C     K+  LN+   
Sbjct: 141 RQALLELR------PAKNVLIDGVLGSGKTWVA-LDVCLSYKVQC-KMDFKIFWLNLKNC 192

Query: 64  NLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLK------------------- 104
           N   T+   L  L     +D ++   S    +     ++++                   
Sbjct: 193 NSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 105 -DV-------SF----------RENQLTGVFPSFIFNKSSLQHLD-----------FSR- 134
            +V       +F          R  Q+T    +      SL H               + 
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 135 -NTLSGEIPANICSSLPFL----------------DYLYLSKNMLHGGIPSTLSNCT--Y 175
            +    ++P  + ++ P                  ++ +++ + L   I S+L+      
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 176 LRILSLAYNDFSGAV-PKDIGNLT-KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN 233
            R +   ++    +V P    ++   L+ L      +          + +L + SL E  
Sbjct: 371 YRKM---FDRL--SVFPPSA-HIPTILLSLIWF--DVIKSDVMVV--VNKLHKYSLVEKQ 420

Query: 234 LQALLLY 240
            +   + 
Sbjct: 421 PKESTIS 427

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLS--FNRLSGSIPSAIFTTY----TLK 104
               + +L ++       + + L     L+ L        +   + S +         L+
Sbjct: 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 105 DVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG 164
            +S   + +    P+     S L  L+ S  T+       +    P L  L++   +   
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDA 328

Query: 165 GIPSTLSNCTYLRILSLAYND 185
           G+    S C  LR L +  ++
Sbjct: 329 GLEVLASTCKDLRELRVFPSE 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.68
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.28
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.47
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.08
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.75
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	85.34

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8.4e-35  Score=235.13  Aligned_cols=229  Identities=35%  Similarity=0.571  Sum_probs=183.7

Q ss_pred             CCchhHHHHHHHHHHhcccCCcchhcCCCCCCCCCcc--eeeeeeCCCC--CceEEEEeCCCccee--ccCccCCCCCCC
Q 048688            6 RTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCN--WTGVTCDVHS--HKVTALNISGLNLTG--TIPSQLGNLSSL   79 (244)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~~~~~~--~~l~~L~l~~~~~~~--~~~~~~~~l~~L   79 (244)
                      .+...|+.||++||+++. ++. .+.. |..+.++|.  |.|+.|....  .+|+.|+++++.+.+  .+|..|..+++|
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L   78 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence            356789999999999994 554 5666 988889998  9999998643  789999999999998  889999999999


Q ss_pred             CEEeCCC-CCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688           80 QSLDLSF-NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS  158 (244)
Q Consensus        80 ~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~  158 (244)
                      ++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+ ..+++|++|+++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~  157 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECC
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECc
Confidence            9999994 88888899999999999999999999988888888889999999999998886777766 778888888888


Q ss_pred             cccccccCCccccCCC-CCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          159 KNMLHGGIPSTLSNCT-YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       159 ~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      +|.+++.+|..+..++ +|+.|++++|.+++..|..+..+. |+.|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            8888877888888776 788888888877766666666555 66666666666655555555555555555555555544


Q ss_pred             cC
Q 048688          238 LL  239 (244)
Q Consensus       238 ~~  239 (244)
                      +|
T Consensus       237 ~~  238 (313)
T 1ogq_A          237 LG  238 (313)
T ss_dssp             GG
T ss_pred             cC
Confidence            33

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.98  E-value=3e-32  Score=221.49  Aligned_cols=232  Identities=20%  Similarity=0.249  Sum_probs=145.1

Q ss_pred             CCchhHHHHHHHHHHhcccCCcchhcCCC----CCCCCCcceeeeeeC--------CCCCceEEEEeCCCcceeccCccC
Q 048688            6 RTITTDQDALLALKAHITHDPTNFLAKNW----NTSAPVCNWTGVTCD--------VHSHKVTALNISGLNLTGTIPSQL   73 (244)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w----~~~~~~c~~~g~~~~--------~~~~~l~~L~l~~~~~~~~~~~~~   73 (244)
                      .....++.+|++||..+..++..+.+. |    ....++|.|.|+.|.        ....+++.|+++++.+. .+|..+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            345678999999999997788778877 8    566789999999884        23467777777777776 566666


Q ss_pred             CCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhh-------
Q 048688           74 GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC-------  146 (244)
Q Consensus        74 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~-------  146 (244)
                      ..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.       
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            66777777777777776 66666777777777777777666 5566666666666666666555445544331       


Q ss_pred             -CCCCCCcEEEcccccccccCCcc-----------------------ccCCCCCcEEeeccCcccccCCccccCCCCCCE
Q 048688          147 -SSLPFLDYLYLSKNMLHGGIPST-----------------------LSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMG  202 (244)
Q Consensus       147 -~~~~~L~~L~l~~~~~~~~~~~~-----------------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  202 (244)
                       ..+++|++|++++|.++ .+|..                       +..+++|+.|++++|.+.+.+|..+..+++|++
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence             12444555555555444 44444                       444455555555555444444545555555555


Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          203 LYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       203 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      |++++|.+.+.+|..+..+++|+.|++++|++.+.+|.++
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            5555555544555555555555555555555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=7e-32  Score=237.17  Aligned_cols=226  Identities=21%  Similarity=0.356  Sum_probs=177.0

Q ss_pred             cCCchhHHHHHHHHHHhcccCCcchhc------CCCCCCCCCcce---eeeeeCCCCCceEEEEeCCCcceeccCccCCC
Q 048688            5 TRTITTDQDALLALKAHITHDPTNFLA------KNWNTSAPVCNW---TGVTCDVHSHKVTALNISGLNLTGTIPSQLGN   75 (244)
Q Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~w~~~~~~c~~---~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~   75 (244)
                      +.+...|+.||.+|++++.+..|.+.+      .+|..+.++|.|   .||.|+.. .+|+.|+++++.+.|.+|+.++.
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~  103 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQ  103 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGG
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhc
Confidence            345567999999999999655544322      259999999999   99999864 79999999999999999999999


Q ss_pred             CCCCCEEeCCCCCC------------------------------------------------------------------
Q 048688           76 LSSLQSLDLSFNRL------------------------------------------------------------------   89 (244)
Q Consensus        76 l~~L~~L~l~~n~i------------------------------------------------------------------   89 (244)
                      +++|++|++++|.+                                                                  
T Consensus       104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l  183 (636)
T 4eco_A          104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL  183 (636)
T ss_dssp             CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred             CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence            99999999988843                                                                  


Q ss_pred             ------------CCCCCccccCCCCCcEEEecCCccCCC-----------------CCcccc--CCCCCCEEEccCCCCC
Q 048688           90 ------------SGSIPSAIFTTYTLKDVSFRENQLTGV-----------------FPSFIF--NKSSLQHLDFSRNTLS  138 (244)
Q Consensus        90 ------------~~~~~~~l~~l~~L~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~  138 (244)
                                  ++ +|..+..+++|++|++++|.+++.                 +|..+.  .+++|++|++++|.+.
T Consensus       184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~  262 (636)
T 4eco_A          184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL  262 (636)
T ss_dssp             CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred             hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence                        23 677788899999999999999874                 888888  8999999999999988


Q ss_pred             CcCChhhhCCCCCCcEEEccccc-ccc-cCCccccCC------CCCcEEeeccCcccccCCc--cccCCCCCCEEEccCC
Q 048688          139 GEIPANICSSLPFLDYLYLSKNM-LHG-GIPSTLSNC------TYLRILSLAYNDFSGAVPK--DIGNLTKLMGLYLGRN  208 (244)
Q Consensus       139 ~~l~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n  208 (244)
                      +.+|..+ ..+++|++|++++|. +++ .+|..++.+      ++|+.|++++|.++ .+|.  .+..+++|++|++++|
T Consensus       263 ~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          263 TKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             SSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred             ccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence            8888777 788888999988887 776 566666554      67777777777776 5665  6667777777777777


Q ss_pred             cccccCCccccCCCCCCEEEccCCccC
Q 048688          209 RLQGEIPREFGNLAELEQMSLAENNLQ  235 (244)
Q Consensus       209 ~l~~~~~~~l~~l~~L~~L~l~~n~l~  235 (244)
                      .+++.+| .+..+++|+.|++++|.++
T Consensus       341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          341 QLEGKLP-AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             CCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred             cCccchh-hhCCCCCCCEEECCCCccc
Confidence            7665555 5555555555555555555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=9.2e-31  Score=234.65  Aligned_cols=227  Identities=27%  Similarity=0.429  Sum_probs=154.5

Q ss_pred             ccCCchhHHHHHHHHHHhcccCCcchhcCCCCCCCCCcceeeeeeCCCCCceEEEEeCCCcceec---cC----------
Q 048688            4 NTRTITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGT---IP----------   70 (244)
Q Consensus         4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~---~~----------   70 (244)
                      .....+.|+.||++||+++. ++. .+++ |..+.++|.|.||.|+  .++|+.|+++++.+.+.   ++          
T Consensus         6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             cccCCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence            34456789999999999996 666 6777 9888899999999998  57999999999988765   33          


Q ss_pred             -------------ccCCCCCCCCEEeCCCCCCCCCCCc--cccCCCCCcEEEecCCccCCCCCccc-cCCCCCCEEEccC
Q 048688           71 -------------SQLGNLSSLQSLDLSFNRLSGSIPS--AIFTTYTLKDVSFRENQLTGVFPSFI-FNKSSLQHLDFSR  134 (244)
Q Consensus        71 -------------~~~~~l~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~  134 (244)
                                   ..|..+++|++|++++|.+.+.+|.  .+..+++|++|++++|.+.+..|..+ ..+++|++|++++
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence                         5677788888888888888777777  78888888888888888876666554 6778888888888


Q ss_pred             CCCCCcCChhh--hCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          135 NTLSGEIPANI--CSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       135 ~~~~~~l~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      |.+++..+...  +..+++|++|++++|.+.+..+.  ..+++|++|++++|.+.+..|. +..+++|++|++++|.+++
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~  237 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG  237 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence            87764444331  25555666666666655433222  4455555555555555544443 5555555555555555554


Q ss_pred             cCCccccCCCCCCEEEccCCccCccc
Q 048688          213 EIPREFGNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       213 ~~~~~l~~l~~L~~L~l~~n~l~~~~  238 (244)
                      .+|..+..+++|++|++++|.+++.+
T Consensus       238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~  263 (768)
T 3rgz_A          238 DFSRAISTCTELKLLNISSNQFVGPI  263 (768)
T ss_dssp             CHHHHTTTCSSCCEEECCSSCCEESC
T ss_pred             cccHHHhcCCCCCEEECCCCcccCcc
Confidence            45555555555555555555554433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=7.1e-30  Score=229.53  Aligned_cols=226  Identities=22%  Similarity=0.370  Sum_probs=179.2

Q ss_pred             ccCCchhHHHHHHHHHHhcccCCcchhcCCCCCCC-----CC--cce------------eeeeeCCCCCceEEEEeCCCc
Q 048688            4 NTRTITTDQDALLALKAHITHDPTNFLAKNWNTSA-----PV--CNW------------TGVTCDVHSHKVTALNISGLN   64 (244)
Q Consensus         4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~g~~~~~~~~~l~~L~l~~~~   64 (244)
                      .+.+...|+.||++||+++. ++     . |..+.     ++  |.|            .||.|+. ..+|+.|+|+++.
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~-~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~  334 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALD-GK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFG  334 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT-GG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTC
T ss_pred             ccccchHHHHHHHHHHHHcC-CC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCC
Confidence            45566789999999999994 33     2 54332     44  999            9999986 5789999999999


Q ss_pred             ceeccCccCCCCCCCCEEeC-CCCCCCCC---------------------------------------------------
Q 048688           65 LTGTIPSQLGNLSSLQSLDL-SFNRLSGS---------------------------------------------------   92 (244)
Q Consensus        65 ~~~~~~~~~~~l~~L~~L~l-~~n~i~~~---------------------------------------------------   92 (244)
                      +.|.+|+.++.+++|++|+| ++|.+.+.                                                   
T Consensus       335 L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~  414 (876)
T 4ecn_A          335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM  414 (876)
T ss_dssp             CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred             CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence            99999999999999999999 66643221                                                   


Q ss_pred             -------------------------CCccccCCCCCcEEEecCCccCC-----------------CCCcccc--CCCCCC
Q 048688           93 -------------------------IPSAIFTTYTLKDVSFRENQLTG-----------------VFPSFIF--NKSSLQ  128 (244)
Q Consensus        93 -------------------------~~~~l~~l~~L~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~  128 (244)
                                               +|..+..+++|++|++++|.+++                 .+|..+.  .+++|+
T Consensus       415 ~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~  494 (876)
T 4ecn_A          415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT  494 (876)
T ss_dssp             CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred             cccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence                                     67788899999999999999987                 3788877  899999


Q ss_pred             EEEccCCCCCCcCChhhhCCCCCCcEEEccccc-ccc-cCCccccCCC-------CCcEEeeccCcccccCCc--cccCC
Q 048688          129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM-LHG-GIPSTLSNCT-------YLRILSLAYNDFSGAVPK--DIGNL  197 (244)
Q Consensus       129 ~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~n~~~~~~~~--~~~~~  197 (244)
                      +|++++|.+.+.+|..+ ..+++|++|++++|. +++ .+|..++.++       +|+.|++++|.++ .+|.  .+..+
T Consensus       495 ~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L  572 (876)
T 4ecn_A          495 DVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM  572 (876)
T ss_dssp             EEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred             EEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence            99999999888888776 788899999999887 776 5666554443       7888888888877 6676  67777


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ++|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|.++
T Consensus       573 ~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l  614 (876)
T 4ecn_A          573 VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF  614 (876)
T ss_dssp             TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTS
T ss_pred             CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHH
Confidence            88888888888777 666 6777777777777777777 455544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-26  Score=183.59  Aligned_cols=184  Identities=23%  Similarity=0.269  Sum_probs=150.3

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      .+++.|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            46788888888888666678888999999999998888555555678889999999999888766667788889999999


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      ++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus       117 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          117 DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            999887 6666666788899999999998885555568888899999999998886666677888899999999998886


Q ss_pred             cCCccccCCCCCCEEEccCCccCcc
Q 048688          213 EIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       213 ~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ..+..+..+++|+.|++++|++.+.
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          196 VPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCHHHhccccCCCEEEecCCCeeCC
Confidence            5566688888999999999988764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=3.8e-27  Score=211.27  Aligned_cols=190  Identities=35%  Similarity=0.505  Sum_probs=147.7

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      .++++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            45566677777776666677777777777777777777767777777777777777777777777777777777777777


Q ss_pred             ccCCCCCCcCChhhhC----------------------------------------------------------------
Q 048688          132 FSRNTLSGEIPANICS----------------------------------------------------------------  147 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~----------------------------------------------------------------  147 (244)
                      +++|.+.+.+|..++.                                                                
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            7777776666654421                                                                


Q ss_pred             -----CCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCC
Q 048688          148 -----SLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLA  222 (244)
Q Consensus       148 -----~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  222 (244)
                           .+++|++|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..++
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence                 235677888888888888888888888888888888888888888888888888999988888888888888888


Q ss_pred             CCCEEEccCCccCcccCCC
Q 048688          223 ELEQMSLAENNLQALLLYS  241 (244)
Q Consensus       223 ~L~~L~l~~n~l~~~~~~~  241 (244)
                      .|++|++++|+++|.+|..
T Consensus       705 ~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          705 MLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCSEEECCSSEEEEECCSS
T ss_pred             CCCEEECcCCcccccCCCc
Confidence            8899999999888888863

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.9e-27  Score=190.95  Aligned_cols=188  Identities=30%  Similarity=0.452  Sum_probs=126.6

Q ss_pred             CCCceEEEEeCC-CcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCE
Q 048688           51 HSHKVTALNISG-LNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH  129 (244)
Q Consensus        51 ~~~~l~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  129 (244)
                      .++++++|++++ +.+.+.+|..|..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            356777888874 7777777777777888888888877777677777777777888888777777777777777777777


Q ss_pred             EEccCCCCCCcCChhhhCCCC-CCcEEEcccccccccCCcccc-----------------------CCCCCcEEeeccCc
Q 048688          130 LDFSRNTLSGEIPANICSSLP-FLDYLYLSKNMLHGGIPSTLS-----------------------NCTYLRILSLAYND  185 (244)
Q Consensus       130 L~l~~~~~~~~l~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~-----------------------~~~~L~~L~l~~n~  185 (244)
                      |++++|.+++.+|..+ ..++ +|++|++++|.+.+.+|..+.                       .+++|+.|++++|.
T Consensus       154 L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             EECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            7777777766666666 4454 666666666666555554444                       44455555555555


Q ss_pred             ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       186 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      +++..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.
T Consensus       233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            4433332 44556666666666666666666666667777777777777666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=5.4e-26  Score=177.93  Aligned_cols=192  Identities=24%  Similarity=0.316  Sum_probs=167.8

Q ss_pred             CCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC
Q 048688           39 PVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP  118 (244)
Q Consensus        39 ~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~  118 (244)
                      .|+.|.|..|..   ..+.++++++.++ .+|..+.  +.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            466788888853   4567899999988 5666554  689999999999997788889999999999999999998888


Q ss_pred             ccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCC
Q 048688          119 SFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLT  198 (244)
Q Consensus       119 ~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~  198 (244)
                      ..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence            88899999999999999998 77777768999999999999999866666788999999999999999877666788999


Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       199 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      +|++|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus       156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            999999999999977777899999999999999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.7e-25  Score=176.94  Aligned_cols=200  Identities=27%  Similarity=0.360  Sum_probs=174.0

Q ss_pred             CCCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCC
Q 048688           38 APVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF  117 (244)
Q Consensus        38 ~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~  117 (244)
                      .+.|.|.|..|.. ....+.++++++.++ .+|..+.  .++++|++++|.+....+..+..+++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            4789999998865 245678999999998 4666554  68999999999998666678999999999999999999666


Q ss_pred             CccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCC
Q 048688          118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNL  197 (244)
Q Consensus       118 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  197 (244)
                      +..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence            666788999999999999998 7777777889999999999999997777788999999999999999986666678899


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ++|++|++++|.+++..+..+..+++|+.|++++|+++++.+..|
T Consensus       157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (270)
T 2o6q_A          157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF  201 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence            999999999999997666778999999999999999998777655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.3e-26  Score=181.14  Aligned_cols=183  Identities=23%  Similarity=0.264  Sum_probs=85.4

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCC-CCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNR-LSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ++++.|++++|.+++..+..|..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            344444444444444444444444444444444443 3323344444444455555544444444344444444555555


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++
T Consensus       136 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence            5555444 333333344445555555555444333333444455555555555544444444444555555555555554


Q ss_pred             ccCCccccCCCCCCEEEccCCccCc
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      +..+..+..+++|+.|++++|++.+
T Consensus       215 ~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          215 ALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cCCHHHcccCcccCEEeccCCCccC
Confidence            3333334445555555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.7e-25  Score=178.21  Aligned_cols=188  Identities=25%  Similarity=0.276  Sum_probs=169.5

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCc-cCCCCCccccCCCCCCEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ-LTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L  130 (244)
                      .++++.|+++++.++...++.|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            5689999999999998788899999999999999999987778899999999999999997 776668889999999999


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      ++++|.+. .++...+..+++|++|++++|.++...+..++.+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            99999998 55555558899999999999999866666789999999999999999876666788999999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          211 QGEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      ++..|..+..+++|+.|++++|.++++.+.
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  219 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence            988899999999999999999999987654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=6.8e-26  Score=184.02  Aligned_cols=163  Identities=23%  Similarity=0.310  Sum_probs=141.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcE
Q 048688           75 NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDY  154 (244)
Q Consensus        75 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~  154 (244)
                      ....+++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCE
Confidence            3578999999999998 88988999999999999999999 78888999999999999999998 898887 88999999


Q ss_pred             EEcccccccccCCccccC---------CCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 048688          155 LYLSKNMLHGGIPSTLSN---------CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELE  225 (244)
Q Consensus       155 L~l~~~~~~~~~~~~l~~---------~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~  225 (244)
                      |++++|.+.+.+|..+..         +++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~  232 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence            999998887788877654         889999999999887 67777888888888888888887 4666677888888


Q ss_pred             EEEccCCccCcccCCCCC
Q 048688          226 QMSLAENNLQALLLYSFM  243 (244)
Q Consensus       226 ~L~l~~n~l~~~~~~~~~  243 (244)
                      .|++++|.+.+.+|.+|.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~  250 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFG  250 (328)
T ss_dssp             EEECTTCTTCCBCCCCTT
T ss_pred             EEECcCCcchhhhHHHhc
Confidence            888888888877777653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=8.1e-25  Score=175.95  Aligned_cols=203  Identities=20%  Similarity=0.250  Sum_probs=136.6

Q ss_pred             CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCC------------------
Q 048688           39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG------------------   91 (244)
Q Consensus        39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~------------------   91 (244)
                      ..|.|.++.|..         ..++++.|+++++.++...+..|..+++|++|++++|.+..                  
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            346677777743         23567888888888775445557777888888887777652                  


Q ss_pred             -------CCCccccCCCCCcEEEecCCccCCCCC-ccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccccc
Q 048688           92 -------SIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH  163 (244)
Q Consensus        92 -------~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~  163 (244)
                             .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.
T Consensus        85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccc
Confidence                   122334445555555555555553333 34566677777777777665 333333366777777777777776


Q ss_pred             c-cCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          164 G-GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       164 ~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      + ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            4 466777777788888888887776667777777888888888888776555567777888888888888877776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=182.66  Aligned_cols=188  Identities=27%  Similarity=0.298  Sum_probs=130.8

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..+++.|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            35678888888888877778888888888888888888766667777888888888888887766555677777788888


Q ss_pred             ccCCCCCCcCChhhhCCCC-------------------------CCcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688          132 FSRNTLSGEIPANICSSLP-------------------------FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF  186 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~-------------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  186 (244)
                      +++|.+. .++...+..++                         +|++|++++|.++ .+| .+..+++|+.|++++|.+
T Consensus       143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred             CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence            8777776 44443334444                         4444555444444 233 245556666666666666


Q ss_pred             cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       187 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++++.+..|
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence            65556666777777777777777776666667777777777777777777666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.3e-24  Score=182.28  Aligned_cols=188  Identities=24%  Similarity=0.276  Sum_probs=138.3

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..+++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            35789999999999888888899999999999999998877778888899999999999988866666677888888888


Q ss_pred             ccCCCCCCcCChhhhCCCCC-------------------------CcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688          132 FSRNTLSGEIPANICSSLPF-------------------------LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF  186 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~-------------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  186 (244)
                      +++|.+. .++...+..+++                         |++|++++|.++ .+| .+..+++|+.|++++|.+
T Consensus       154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCC
T ss_pred             CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcC
Confidence            8888876 555544344444                         444444444444 222 244556666666666666


Q ss_pred             cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       187 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++++.+..|
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            66666667777777777777777776666677777777777777777777666544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=5.1e-24  Score=168.58  Aligned_cols=183  Identities=23%  Similarity=0.284  Sum_probs=117.7

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..+++.|+++++.+.. + +.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            3456667777766552 2 245666777777777776653 2 3566667777777777776655555566677777777


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus       116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            7777766 555544466667777777777666444455666677777777777766555555566677777777777776


Q ss_pred             ccCCccccCCCCCCEEEccCCccCcccC
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQALLL  239 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~  239 (244)
                      +..+..+..+++|+.|++++|++.+..|
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            5555556667777777777766655443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=1.5e-23  Score=170.37  Aligned_cols=204  Identities=22%  Similarity=0.286  Sum_probs=144.0

Q ss_pred             CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEec
Q 048688           39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR  109 (244)
Q Consensus        39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  109 (244)
                      ..|.+..+.|..         ..++++.|+++++.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            345666666642         23567888888888886666678888888888888888876667777777777777777


Q ss_pred             CCccCCC---------------------CCccccCCCCCCEEEccCCCCCC-cCChhhhCCC------------------
Q 048688          110 ENQLTGV---------------------FPSFIFNKSSLQHLDFSRNTLSG-EIPANICSSL------------------  149 (244)
Q Consensus       110 ~~~l~~~---------------------~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~~~------------------  149 (244)
                      +|.++..                     .+..+..+++|++|++++|.+.. .+....+..+                  
T Consensus       109 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~  188 (330)
T 1xku_A          109 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ  188 (330)
T ss_dssp             SSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred             CCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence            7765521                     11123344555555555554431 0111111223                  


Q ss_pred             ---CCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 048688          150 ---PFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQ  226 (244)
Q Consensus       150 ---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  226 (244)
                         ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.
T Consensus       189 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~  267 (330)
T 1xku_A          189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV  267 (330)
T ss_dssp             SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred             cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCE
Confidence               45666666666666556677888889999999999988777777888899999999999998 78888889999999


Q ss_pred             EEccCCccCcccCCCCC
Q 048688          227 MSLAENNLQALLLYSFM  243 (244)
Q Consensus       227 L~l~~n~l~~~~~~~~~  243 (244)
                      |++++|+++++.+..|+
T Consensus       268 L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          268 VYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             EECCSSCCCCCCTTSSS
T ss_pred             EECCCCcCCccChhhcC
Confidence            99999999988777764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=7.4e-24  Score=169.16  Aligned_cols=180  Identities=27%  Similarity=0.242  Sum_probs=156.8

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..+++.|++++|.+++..+..|..+++|++|++++|.+. .++.. ..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            467899999999999888889999999999999999997 33333 78899999999999998 6677788899999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++
T Consensus       107 l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          107 VSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            9999998 777666688999999999999998666677889999999999999998666666788999999999999998


Q ss_pred             ccCCccccCCCCCCEEEccCCccCc
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                       .+|..+..+.+|+.|++++|++.+
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             -ccChhhcccccCCeEEeCCCCccC
Confidence             788888888899999999999876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=5e-25  Score=180.65  Aligned_cols=206  Identities=19%  Similarity=0.231  Sum_probs=171.7

Q ss_pred             CCCCCCCcceeeeeeCC-----------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCC
Q 048688           34 WNTSAPVCNWTGVTCDV-----------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT  102 (244)
Q Consensus        34 w~~~~~~c~~~g~~~~~-----------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~  102 (244)
                      |......|.|.++ |+.           ..++++.|+++++.+++..+..|..+++|++|++++|.+.+..+..+..+++
T Consensus        23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence            5666778888876 431           2357999999999999777779999999999999999999777788999999


Q ss_pred             CcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCCh-hhhCCCCCCcEEEcccc-cccccCCccccCCCCCcEEe
Q 048688          103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPA-NICSSLPFLDYLYLSKN-MLHGGIPSTLSNCTYLRILS  180 (244)
Q Consensus       103 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~  180 (244)
                      |++|++++|.+++..+..+..+++|++|++++|.+. .++. ..+..+++|++|++++| .+....+..+..+++|+.|+
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            999999999999655555889999999999999998 7776 55588999999999998 46656677899999999999


Q ss_pred             eccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCC
Q 048688          181 LAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYS  241 (244)
Q Consensus       181 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  241 (244)
                      +++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence            9999998888889999999999999999997433333456899999999999999876543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=7.2e-24  Score=179.28  Aligned_cols=182  Identities=18%  Similarity=0.227  Sum_probs=137.3

Q ss_pred             eEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccC
Q 048688           55 VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSR  134 (244)
Q Consensus        55 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  134 (244)
                      ...++.++..++ .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            345677777777 5666554  6899999999999977888999999999999999999988888899999999999999


Q ss_pred             CCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeec-------------------------cCccccc
Q 048688          135 NTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA-------------------------YNDFSGA  189 (244)
Q Consensus       135 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~-------------------------~n~~~~~  189 (244)
                      |.++ .++...+..+++|++|++++|.+....+..+..+++|+.|+++                         +|.+++ 
T Consensus       133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            9998 7887777899999999999999875444455555555555555                         444442 


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       190 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      +| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++++.|..|
T Consensus       211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  262 (452)
T 3zyi_A          211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF  262 (452)
T ss_dssp             CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence            22 24455566666666666665556666777777777777777777666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=3e-24  Score=169.91  Aligned_cols=183  Identities=24%  Similarity=0.211  Sum_probs=163.3

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      .+++++.|++++|.+.+ + +.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        61 ~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             GCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            46789999999999885 3 478899999999999999997777778999999999999999997777778899999999


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      ++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       139 ~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          139 NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            99999998 77776668899999999999999976667789999999999999999987777789999999999999988


Q ss_pred             cccCCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688          211 QGEIPREFGNLAELEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  243 (244)
                      .+       .++.|+.|+++.|.+++.+|.+++
T Consensus       218 ~~-------~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          218 DC-------TCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             cc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence            73       366799999999999999998765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=7e-24  Score=164.66  Aligned_cols=187  Identities=17%  Similarity=0.223  Sum_probs=160.8

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCC-CCCCCCccccCCCCCcEEEecC-CccCCCCCccccCCCCCCE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNR-LSGSIPSAIFTTYTLKDVSFRE-NQLTGVFPSFIFNKSSLQH  129 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~  129 (244)
                      ..+++.|+++++.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..+..+++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            4579999999999998777799999999999999997 8755566899999999999998 9998777778899999999


Q ss_pred             EEccCCCCCCcCChhhhCCCCCCc---EEEcccc-cccccCCccccCCCCCc-EEeeccCcccccCCccccCCCCCCEEE
Q 048688          130 LDFSRNTLSGEIPANICSSLPFLD---YLYLSKN-MLHGGIPSTLSNCTYLR-ILSLAYNDFSGAVPKDIGNLTKLMGLY  204 (244)
Q Consensus       130 L~l~~~~~~~~l~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~  204 (244)
                      |++++|.+. .+|.  +..+++|+   +|++++| .++...+..+..+++|+ .|++++|.++...+..+.. .+|+.|+
T Consensus       110 L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          110 LGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred             EeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence            999999998 6776  47788888   9999999 88866667799999999 9999999998444444444 8999999


Q ss_pred             ccCCc-ccccCCccccCC-CCCCEEEccCCccCcccCCCC
Q 048688          205 LGRNR-LQGEIPREFGNL-AELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       205 l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      +++|+ +++..+..+..+ ++|+.|++++|+++++.+..|
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~  225 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL  225 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence            99995 986667788899 999999999999998766544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=2.9e-23  Score=168.78  Aligned_cols=200  Identities=22%  Similarity=0.268  Sum_probs=144.3

Q ss_pred             CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEec
Q 048688           39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR  109 (244)
Q Consensus        39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  109 (244)
                      ..|.+..+.|..         ..++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            346777777742         23578999999999987778889999999999999999886678888888889999888


Q ss_pred             CCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccc----------------------------
Q 048688          110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM----------------------------  161 (244)
Q Consensus       110 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~----------------------------  161 (244)
                      +|.+. .+|..+.  ++|++|++++|.+. .++...+..+++|++|++++|.                            
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence            88876 3333322  45555555555554 4444333444445444444443                            


Q ss_pred             ------------------ccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 048688          162 ------------------LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE  223 (244)
Q Consensus       162 ------------------~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  223 (244)
                                        +++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++
T Consensus       187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  265 (332)
T 2ft3_A          187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL  265 (332)
T ss_dssp             CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred             cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence                              33333345666777888888888877666667788888888888888887 77777888888


Q ss_pred             CCEEEccCCccCcccCCCCC
Q 048688          224 LEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       224 L~~L~l~~n~l~~~~~~~~~  243 (244)
                      |+.|++++|+++++.+..|+
T Consensus       266 L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSS
T ss_pred             CCEEECCCCCCCccChhHcc
Confidence            89999999988887766654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=5.7e-24  Score=168.60  Aligned_cols=185  Identities=22%  Similarity=0.191  Sum_probs=103.7

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS  133 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  133 (244)
                      +++.|+++++.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45556666665554444455555566666666555554444455555556666665555554444455555555555555


Q ss_pred             CCCCCCcCChhhhCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeeccCcccccCCcccc-----------------
Q 048688          134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAVPKDIG-----------------  195 (244)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-----------------  195 (244)
                      +|.+. .++...+..+++|++|++++|.++. .+|..+..+++|+.|++++|.+++..+..+.                 
T Consensus       109 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            55554 3333222455555555555555543 1345555555555555555554433222222                 


Q ss_pred             ----------CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccC
Q 048688          196 ----------NLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLL  239 (244)
Q Consensus       196 ----------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  239 (244)
                                ...+|+.|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence                      22367777777777775545556777788888888887776543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=1.4e-23  Score=176.87  Aligned_cols=184  Identities=20%  Similarity=0.227  Sum_probs=133.4

Q ss_pred             eEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccC
Q 048688           55 VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSR  134 (244)
Q Consensus        55 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  134 (244)
                      ...++..+..++ .+|..+.  +++++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            345677777777 5666554  6899999999999977778999999999999999999988888899999999999999


Q ss_pred             CCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCc-ccccCCccccCCC---------------
Q 048688          135 NTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNLT---------------  198 (244)
Q Consensus       135 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~---------------  198 (244)
                      |.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|. +....+..+..++               
T Consensus       122 n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            9998 7887766899999999999999875555566666666666666532 3322223344444               


Q ss_pred             -------CCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          199 -------KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       199 -------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                             +|+.|++++|.+++..+..+..+++|+.|++++|+++++.+..|
T Consensus       201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  251 (440)
T 3zyj_A          201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF  251 (440)
T ss_dssp             CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred             cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh
Confidence                   45555555555554445555555555555655555555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=1.3e-23  Score=177.72  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCC-CccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSI-PSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +++++|++++|.+++..+..|..+++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            56777777777777666777777777777777777665333 44566677777777777766655566666666666666


Q ss_pred             ccCCCCCCcCChh-hhCCCCCCcEEEcccccccccCCcc-ccCCCCCcEEeeccCcccc
Q 048688          132 FSRNTLSGEIPAN-ICSSLPFLDYLYLSKNMLHGGIPST-LSNCTYLRILSLAYNDFSG  188 (244)
Q Consensus       132 l~~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~  188 (244)
                      +++|.+.+.++.. .+..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.+
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            6666665333222 1255566666666666655444443 4555555555555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=1e-23  Score=178.35  Aligned_cols=87  Identities=18%  Similarity=0.280  Sum_probs=51.3

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCcc--ccCCCCCcEEEecCCccCCCCCcc-ccCCCCCC
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSA--IFTTYTLKDVSFRENQLTGVFPSF-IFNKSSLQ  128 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~L~  128 (244)
                      ++++++|++++|.+.+..|..|..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..|.. +..+++|+
T Consensus        78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            456666666666666555666666666666666666665433332  555666666666666665544443 45556666


Q ss_pred             EEEccCCCCC
Q 048688          129 HLDFSRNTLS  138 (244)
Q Consensus       129 ~L~l~~~~~~  138 (244)
                      +|++++|.+.
T Consensus       158 ~L~L~~n~l~  167 (455)
T 3v47_A          158 VLDLTFNKVK  167 (455)
T ss_dssp             EEECTTCCBS
T ss_pred             EEeCCCCccc
Confidence            6666555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=4.9e-24  Score=171.38  Aligned_cols=184  Identities=20%  Similarity=0.256  Sum_probs=162.3

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      ..+++.|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            567888899988887 466678899999999999999985444 578899999999999999988888889999999999


Q ss_pred             EccCCCCCC-cCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCc
Q 048688          131 DFSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNR  209 (244)
Q Consensus       131 ~l~~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  209 (244)
                      ++++|.+.+ .+|..+ ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus       156 ~l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          156 KMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             ECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             ECCCCccccccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            999999974 255544 889999999999999997778899999999999999999987767778899999999999999


Q ss_pred             ccccCCccccCCC-CCCEEEccCCccCcc
Q 048688          210 LQGEIPREFGNLA-ELEQMSLAENNLQAL  237 (244)
Q Consensus       210 l~~~~~~~l~~l~-~L~~L~l~~n~l~~~  237 (244)
                      +++..+..+..++ +|+.|++++|++++.
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            9988888898884 899999999999874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=8.9e-24  Score=184.53  Aligned_cols=132  Identities=21%  Similarity=0.203  Sum_probs=62.3

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS  133 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  133 (244)
                      +++.++++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            34445555554443333334444555555555555443333444445555555555555444444444445555555555


Q ss_pred             CCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688          134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF  186 (244)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  186 (244)
                      +|.+. .+|..++..+++|++|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus       132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence            55444 44444434444455555555544444444444444444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.7e-23  Score=165.85  Aligned_cols=163  Identities=20%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      ..++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (276)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence            35667777777777766566667777777777777777765555666677777777777777665555456666777777


Q ss_pred             EccCCCCCC-cCChhhhCCCCCCcEEEcccccccccCCcc---------------------------ccCCCCCcEEeec
Q 048688          131 DFSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIPST---------------------------LSNCTYLRILSLA  182 (244)
Q Consensus       131 ~l~~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------------l~~~~~L~~L~l~  182 (244)
                      ++++|.+.+ .+|..+ ..+++|++|++++|.+++..+..                           .....+|+.|+++
T Consensus       130 ~l~~n~l~~~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~  208 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD  208 (276)
T ss_dssp             ECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECC
T ss_pred             ECcCCccceecCchhh-ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECC
Confidence            777776652 134444 56666666666666654322221                           1223378899999


Q ss_pred             cCcccccCCccccCCCCCCEEEccCCcccccC
Q 048688          183 YNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI  214 (244)
Q Consensus       183 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  214 (244)
                      +|.+++..+..+..+++|+.|++++|++....
T Consensus       209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             SSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CCceeecCHhHhcccccccEEEccCCcccccC
Confidence            99988666666788999999999999998543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=5.1e-23  Score=164.31  Aligned_cols=182  Identities=25%  Similarity=0.204  Sum_probs=158.7

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..+++.++++++.++ .+|..+.  +.+++|++++|.+.+..+..+..+++|++|++++|.+++..+  ...+++|++|+
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD   83 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred             cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence            568899999999998 5665553  689999999999987778889999999999999999985433  26899999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.+. .+|..+ ..+++|++|++++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus        84 Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             CCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            9999998 888766 78999999999999999666688999999999999999998777777889999999999999999


Q ss_pred             ccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      ...+..+..+++|+.|++++|+++.+.+.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~  190 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYTIPKG  190 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence            65556678899999999999999975443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=177.71  Aligned_cols=188  Identities=18%  Similarity=0.197  Sum_probs=155.5

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            45788999999999887788899999999999999999877788899999999999999998866666778899999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++.+|.+.
T Consensus       111 Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          111 ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            9999987 454444488899999999999888777778888999999999999888665566788888888888888888


Q ss_pred             ccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      +..+..+..+++|+.|++++|++.+.+|.
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTP  218 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred             EeChhhcccCcccceeeCCCCccccccCc
Confidence            66666777788888888877766555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1.7e-23  Score=173.81  Aligned_cols=133  Identities=21%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      .+++.++++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            34444555555444333333444444555555544444333334444444555555544444444444444444444444


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF  186 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  186 (244)
                      ++|.+. .+|..++..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence            444444 44444334444444444444444433333444444444444444433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=5.9e-24  Score=186.84  Aligned_cols=188  Identities=18%  Similarity=0.271  Sum_probs=167.9

Q ss_pred             CCCceEEEEeCCCcceec-----------------cCccCC--CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC
Q 048688           51 HSHKVTALNISGLNLTGT-----------------IPSQLG--NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN  111 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~  111 (244)
                      .+++++.|++++|.+++.                 +|+.+.  .+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            478899999999999975                 899999  9999999999999999899999999999999999999


Q ss_pred             c-cCC-CCCccccCC------CCCCEEEccCCCCCCcCCh--hhhCCCCCCcEEEcccccccccCCccccCCCCCcEEee
Q 048688          112 Q-LTG-VFPSFIFNK------SSLQHLDFSRNTLSGEIPA--NICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSL  181 (244)
Q Consensus       112 ~-l~~-~~~~~~~~l------~~L~~L~l~~~~~~~~l~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  181 (244)
                      . +++ .+|..+..+      ++|++|++++|.++ .+|.  .+ ..+++|++|++++|.+.+.+| .++.+++|+.|++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            8 887 778777765      99999999999998 8887  56 889999999999999998888 8889999999999


Q ss_pred             ccCcccccCCccccCCCC-CCEEEccCCcccccCCccccCCC--CCCEEEccCCccCcccCCCCC
Q 048688          182 AYNDFSGAVPKDIGNLTK-LMGLYLGRNRLQGEIPREFGNLA--ELEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       182 ~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~  243 (244)
                      ++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|+.|++++|.+++.+|.+|.
T Consensus       361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence            999988 77888888888 999999999998 7787777654  899999999999988887664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=9.6e-23  Score=173.41  Aligned_cols=191  Identities=19%  Similarity=0.202  Sum_probs=106.2

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCc------------
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPS------------  119 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~------------  119 (244)
                      +++++.|++++|.+++..|..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+.            
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            45566666666666555555566666666666665555533333445555555555555554444444            


Q ss_pred             ------------cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeecc----
Q 048688          120 ------------FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY----  183 (244)
Q Consensus       120 ------------~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~----  183 (244)
                                  .+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+..+..+++|+.|++++    
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence                        4444455555555555554 44444335555555555555555443344444444444444443    


Q ss_pred             --------------------CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688          184 --------------------NDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       184 --------------------n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  243 (244)
                                          |.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++++.|..|.
T Consensus       214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  293 (477)
T 2id5_A          214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR  293 (477)
T ss_dssp             CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred             cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence                                333322223455666777777777777755566677777777777777777777666553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=1.6e-22  Score=176.70  Aligned_cols=186  Identities=25%  Similarity=0.250  Sum_probs=101.8

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS  133 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  133 (244)
                      +++.|+++++.+.+..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            5666666666666555556666666666666666665 566666666666666666666665555555566666666666


Q ss_pred             CCCCCCcCChhhhCCCCCCcEEEcccccccccC--CccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI--PSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +|.+.+.++...+..+++|++|++++|.+.+..  +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            665554555443355555555555555554322  344455555555555555544444444444444555555444444


Q ss_pred             ccCCc-cccCCCCCCEEEccCCccCcccCC
Q 048688          212 GEIPR-EFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       212 ~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      +..+. .+..+++|+.|++++|.+++..|.
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  443 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQ  443 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHH
Confidence            33222 244444444444444444444433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=8.1e-23  Score=178.66  Aligned_cols=147  Identities=18%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             cccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCC
Q 048688           96 AIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY  175 (244)
Q Consensus        96 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  175 (244)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..|..+..+++
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            34444444444444444444444444445555555555555443333332345555555555555555444555555555


Q ss_pred             CcEEeeccCccccc---CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          176 LRILSLAYNDFSGA---VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       176 L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      |+.|++++|.+.+.   .+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..|
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  520 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL  520 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred             CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence            56666655555431   12334555556666666665555555555566666666666666665555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=2.8e-22  Score=166.37  Aligned_cols=111  Identities=23%  Similarity=0.272  Sum_probs=73.2

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +++++.|+++++.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            45677777777777666666777777777777777777655566667777777777777777644334456677777777


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEccccccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLH  163 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~  163 (244)
                      +++|.+. .++...+..+++|++|++++|.++
T Consensus       148 L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          148 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCSSCCC-BCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCCccC-ccChhhccCCCCCCEEECCCCcCC
Confidence            7777766 444443366666666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=2.4e-23  Score=167.93  Aligned_cols=182  Identities=22%  Similarity=0.220  Sum_probs=124.9

Q ss_pred             CCceEEEEeCCCcceeccCccC--CCCCCCCEEeCCCCCCCCCCCccccCC-----CCCcEEEecCCccCCCCCccccCC
Q 048688           52 SHKVTALNISGLNLTGTIPSQL--GNLSSLQSLDLSFNRLSGSIPSAIFTT-----YTLKDVSFRENQLTGVFPSFIFNK  124 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~~~l  124 (244)
                      ..++++|++++|.+++.+|..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5678888888888877777765  7788888888888888744 6666665     788888888888877666777778


Q ss_pred             CCCCEEEccCCCCCCcC--Chhh-hCCCCCCcEEEcccccccc--cCC-ccccCCCCCcEEeeccCcccccCC-ccccCC
Q 048688          125 SSLQHLDFSRNTLSGEI--PANI-CSSLPFLDYLYLSKNMLHG--GIP-STLSNCTYLRILSLAYNDFSGAVP-KDIGNL  197 (244)
Q Consensus       125 ~~L~~L~l~~~~~~~~l--~~~~-~~~~~~L~~L~l~~~~~~~--~~~-~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~  197 (244)
                      ++|++|++++|.+.+.+  +..+ +..+++|++|++++|.++.  .++ ..+..+++|+.|++++|.+++..| ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            88888888888765331  2222 2566777777777777762  111 233456777777777777765443 344556


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ++|++|++++|.++ .+|..+.  ++|+.|++++|++++.
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence            77777777777776 5665554  6677777777777765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=2.6e-23  Score=179.71  Aligned_cols=184  Identities=17%  Similarity=0.177  Sum_probs=154.0

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      .+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            35799999999999988888999999999999999999977778899999999999999999977777789999999999


Q ss_pred             ccCCCCCC-cCChhhhCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCc
Q 048688          132 FSRNTLSG-EIPANICSSLPFLDYLYLSKNMLHGGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNR  209 (244)
Q Consensus       132 l~~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  209 (244)
                      +++|.+.+ ..+..+ ..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus       105 Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          105 LMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             CTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             CCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            99999873 234444 889999999999998433444 678999999999999999988888888888888888888887


Q ss_pred             ccccCCcc-ccCCCCCCEEEccCCccCcc
Q 048688          210 LQGEIPRE-FGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       210 l~~~~~~~-l~~l~~L~~L~l~~n~l~~~  237 (244)
                      +. .++.. +..+++|+.|++++|++++.
T Consensus       184 ~~-~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          184 SA-FLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             ST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             cc-ccchhhHhhcccccEEEccCCccccc
Confidence            76 33433 34577888888888888774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=6.1e-23  Score=179.44  Aligned_cols=183  Identities=20%  Similarity=0.203  Sum_probs=107.9

Q ss_pred             CCceEEEEeCCCcceec--cCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC-ccccCCCCCC
Q 048688           52 SHKVTALNISGLNLTGT--IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKSSLQ  128 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~  128 (244)
                      .++++.|++++|.+++.  .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred             CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence            45666666666666543  2555556666666666666655 344555566666666666666655444 3455566666


Q ss_pred             EEEccCCCCCCcCChhhhCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccC
Q 048688          129 HLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGR  207 (244)
Q Consensus       129 ~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  207 (244)
                      +|++++|.+.+..+..+ ..+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+++..|..+..+++|++|++++
T Consensus       428 ~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             EEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            66666666653333333 556666666666666654 2455566666666666666666555555555666666666666


Q ss_pred             CcccccCCccccCCCCCCEEEccCCccCc
Q 048688          208 NRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       208 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      |.+++..|..+..+++|+.|++++|+++.
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFNRIET  535 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence            66665555556666666666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=170.23  Aligned_cols=137  Identities=21%  Similarity=0.216  Sum_probs=113.5

Q ss_pred             CCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC-ccccCCCCCC
Q 048688           50 VHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKSSLQ  128 (244)
Q Consensus        50 ~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~  128 (244)
                      ...++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            357889999999999998888899999999999999999985444458899999999999999985444 4788899999


Q ss_pred             EEEccCCC-CCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688          129 HLDFSRNT-LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS  187 (244)
Q Consensus       129 ~L~l~~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  187 (244)
                      +|++++|. +. .++...+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus       153 ~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          153 ILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             EEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             EEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            99999995 55 666555588999999999999998777888887777777776666553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=4.5e-22  Score=155.57  Aligned_cols=161  Identities=21%  Similarity=0.253  Sum_probs=146.7

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..+++.|+++++.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            45799999999999988888999999999999999999977788899999999999999999977778889999999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       114 L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          114 LGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            9999998 787777788999999999999999666668999999999999999999777778889999999999999997


Q ss_pred             cc
Q 048688          212 GE  213 (244)
Q Consensus       212 ~~  213 (244)
                      ..
T Consensus       193 c~  194 (251)
T 3m19_A          193 CS  194 (251)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=8.7e-23  Score=178.46  Aligned_cols=186  Identities=18%  Similarity=0.187  Sum_probs=167.3

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcEEEecCCccCCCCCccccCCCCCCE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH  129 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  129 (244)
                      ..++++.|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus       374 ~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  452 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT  452 (606)
T ss_dssp             CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence            46789999999999885 66899999999999999999986666 68889999999999999999888888999999999


Q ss_pred             EEccCCCCCCc-CChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCC
Q 048688          130 LDFSRNTLSGE-IPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRN  208 (244)
Q Consensus       130 L~l~~~~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  208 (244)
                      |++++|.+.+. +|..+ ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|
T Consensus       453 L~l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVF-ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             EECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCCcchHHhh-ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence            99999999854 45444 88999999999999999888899999999999999999999888899999999999999999


Q ss_pred             cccccCCccccCCC-CCCEEEccCCccCcccC
Q 048688          209 RLQGEIPREFGNLA-ELEQMSLAENNLQALLL  239 (244)
Q Consensus       209 ~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~  239 (244)
                      +++ .+|..+..++ +|+.|++++|++.+..+
T Consensus       532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            998 6777788887 59999999999987544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=3.5e-22  Score=174.47  Aligned_cols=112  Identities=22%  Similarity=0.266  Sum_probs=90.9

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            46788999999998877778889999999999999988877777788889999999999988865555567888899999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG  164 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~  164 (244)
                      +++|.+. .+++..+..+++|++|++++|.+.+
T Consensus       154 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             eeCCcCC-CCChhhhhcCCcCcEEECcCCCCCC
Confidence            9888887 4544444778888888888887653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.5e-22  Score=153.93  Aligned_cols=157  Identities=22%  Similarity=0.192  Sum_probs=71.5

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688           78 SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL  157 (244)
Q Consensus        78 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l  157 (244)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence            4445555544444333333444445555555554444333333444455555555555444 333333344445555555


Q ss_pred             ccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.       ..++.|+.|+++.|.+++.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence            555444333333444445555555555444333333444445555555554433       1233444455555555554


Q ss_pred             cCCCC
Q 048688          238 LLYSF  242 (244)
Q Consensus       238 ~~~~~  242 (244)
                      +|.++
T Consensus       181 ip~~~  185 (208)
T 2o6s_A          181 VRNSA  185 (208)
T ss_dssp             BBCTT
T ss_pred             eeccC
Confidence            44433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=3.3e-22  Score=152.01  Aligned_cols=178  Identities=21%  Similarity=0.215  Sum_probs=152.6

Q ss_pred             CCCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEe
Q 048688           38 APVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSF  108 (244)
Q Consensus        38 ~~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  108 (244)
                      ...|.|.++.|..         ...+++.|+++++.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus         4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A            4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            3457788888853         2457999999999999777778899999999999999998665666789999999999


Q ss_pred             cCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccc
Q 048688          109 RENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSG  188 (244)
Q Consensus       109 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  188 (244)
                      ++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            999999776677889999999999999998 7777666889999999999999986666678999999999999998753


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 048688          189 AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE  223 (244)
Q Consensus       189 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  223 (244)
                             .+++|+.|++..|.+++.+|..++.++.
T Consensus       163 -------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 -------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                   4567899999999999999988887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=2.1e-22  Score=182.31  Aligned_cols=199  Identities=19%  Similarity=0.161  Sum_probs=171.4

Q ss_pred             ceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCC-CccccCCCCCcEEEecCCccCCCCCcc
Q 048688           42 NWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSI-PSAIFTTYTLKDVSFRENQLTGVFPSF  120 (244)
Q Consensus        42 ~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~  120 (244)
                      .+..+.+  .+++++.|++++|.+++..+..|..+++|++|++++|...+.+ |..|..+++|++|++++|.+.+..|..
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            4555554  4678999999999999888999999999999999999655455 788999999999999999999888999


Q ss_pred             ccCCCCCCEEEccCCCCCCcCChh-hhCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeeccCcccccCCccccCC-
Q 048688          121 IFNKSSLQHLDFSRNTLSGEIPAN-ICSSLPFLDYLYLSKNMLHGGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNL-  197 (244)
Q Consensus       121 ~~~l~~L~~L~l~~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-  197 (244)
                      +..+++|++|++++|.+.+.++.. .+..+++|++|++++|.+.+..+ ..++++++|+.|++++|.+++..+..+..+ 
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~  172 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ  172 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence            999999999999999998656554 34889999999999999986544 578999999999999999988888888776 


Q ss_pred             -CCCCEEEccCCcccccCCccccCCCC------CCEEEccCCccCcccCCCC
Q 048688          198 -TKLMGLYLGRNRLQGEIPREFGNLAE------LEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       198 -~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~  242 (244)
                       ++|+.|++++|.+.+..+..++.+++      |+.|++++|.+++..|..+
T Consensus       173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  224 (844)
T 3j0a_A          173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF  224 (844)
T ss_dssp             HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred             CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence             89999999999999877777766665      9999999998887766544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=4.1e-23  Score=166.56  Aligned_cols=182  Identities=20%  Similarity=0.238  Sum_probs=153.8

Q ss_pred             CCCCceEEEEeCCCcceeccCccCCCC-----CCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC--CCccc-
Q 048688           50 VHSHKVTALNISGLNLTGTIPSQLGNL-----SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV--FPSFI-  121 (244)
Q Consensus        50 ~~~~~l~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~-  121 (244)
                      ...++++.|++++|.+++. |+.+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            3478899999999999976 7777776     9999999999999977778999999999999999997653  23333 


Q ss_pred             -cCCCCCCEEEccCCCCCC--cCChhhhCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeeccCcccccCCccccCC
Q 048688          122 -FNKSSLQHLDFSRNTLSG--EIPANICSSLPFLDYLYLSKNMLHGGIP-STLSNCTYLRILSLAYNDFSGAVPKDIGNL  197 (244)
Q Consensus       122 -~~l~~L~~L~l~~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  197 (244)
                       ..+++|++|++++|.+.+  .++..++..+++|++|++++|.+++..| ..+..+++|+.|++++|.++ .+|..+.  
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence             789999999999999972  3344555678999999999999987664 45667899999999999998 6777665  


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ++|++|++++|++++. |. +..+++|+.|++++|++++.
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            8899999999999954 65 89999999999999999864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=2.2e-22  Score=174.59  Aligned_cols=188  Identities=21%  Similarity=0.250  Sum_probs=152.4

Q ss_pred             CCCceEEEEeCCCcceecc--CccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC-ccccCCCCC
Q 048688           51 HSHKVTALNISGLNLTGTI--PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKSSL  127 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L  127 (244)
                      ..++++.|++++|.+.+..  +..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.+..+ ..+..+++|
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            3567788888888776443  566778888888888888887 444458888889999999888876555 457788999


Q ss_pred             CEEEccCCCCCCcCChhhhCCCCCCcEEEccccccc-ccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEcc
Q 048688          128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH-GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLG  206 (244)
Q Consensus       128 ~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  206 (244)
                      ++|++++|.+.+..+. .+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus       424 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          424 IYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            9999999988744444 4478889999999999886 4678888899999999999999887778888889999999999


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          207 RNRLQGEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       207 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      +|.+++..+..+..+++|+.|++++|++++..|.
T Consensus       503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999877777788899999999999999887664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=9.7e-22  Score=174.02  Aligned_cols=186  Identities=22%  Similarity=0.237  Sum_probs=110.1

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcEEEecCCccC------------------
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKDVSFRENQLT------------------  114 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~l~------------------  114 (244)
                      .++.|++++|.+.+..+..|..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.                  
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            45555555555555555555555555555555555543332 34444444555554444433                  


Q ss_pred             --------CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCC--------ccccCCCCCcE
Q 048688          115 --------GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP--------STLSNCTYLRI  178 (244)
Q Consensus       115 --------~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~l~~~~~L~~  178 (244)
                              +..|..+..+++|++|++++|.++ .++...+..+++|++|++++|.++...+        ..+..+++|+.
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence                    234555666667777777777766 5555544666777777777776653211        12566667777


Q ss_pred             EeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          179 LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       179 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      |++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|+++++.|.
T Consensus       541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK  602 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred             EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence            77777776644344566677777777777777644445566677777777777777666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=2e-22  Score=162.30  Aligned_cols=181  Identities=21%  Similarity=0.219  Sum_probs=135.5

Q ss_pred             CceEEEEeCCCcceeccCccC--CCCCCCCEEeCCCCCCCCCCC----ccccCCCCCcEEEecCCccCCCCCccccCCCC
Q 048688           53 HKVTALNISGLNLTGTIPSQL--GNLSSLQSLDLSFNRLSGSIP----SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSS  126 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  126 (244)
                      .+++.|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            348899999999888888887  888999999999998875444    34456889999999999998777788888999


Q ss_pred             CCEEEccCCCCCCc--CCh-hhhCCCCCCcEEEcccccccccCCc----cccCCCCCcEEeeccCcccccCCccccCC--
Q 048688          127 LQHLDFSRNTLSGE--IPA-NICSSLPFLDYLYLSKNMLHGGIPS----TLSNCTYLRILSLAYNDFSGAVPKDIGNL--  197 (244)
Q Consensus       127 L~~L~l~~~~~~~~--l~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~~--  197 (244)
                      |++|++++|.+.+.  ++. ..+..+++|++|++++|.++ .++.    .++.+++|++|++++|.+++..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999987532  221 11246778888888888775 2232    24567788888888888876656666555  


Q ss_pred             -CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          198 -TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       198 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                       ++|++|++++|.++ .+|..+.  ++|+.|++++|+++++
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence             57888888888887 5666553  6788888888888774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=168.46  Aligned_cols=161  Identities=27%  Similarity=0.343  Sum_probs=133.6

Q ss_pred             CCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCC--CCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCC
Q 048688           74 GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG--VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF  151 (244)
Q Consensus        74 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~  151 (244)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+  ..|..+..+++|++|++++|.+.+.+|...+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            577889999999999887788888889999999999998885  445667888999999999999885588776677889


Q ss_pred             CcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEEcc
Q 048688          152 LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLA  230 (244)
Q Consensus       152 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~  230 (244)
                      |++|++++|.+++..|..+.  ++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|.. +..+++|+.|+++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence            99999999988766666554  68999999999988 67777778999999999999998 55554 8889999999999


Q ss_pred             CCccCccc
Q 048688          231 ENNLQALL  238 (244)
Q Consensus       231 ~n~l~~~~  238 (244)
                      +|++++..
T Consensus       477 ~N~~~c~c  484 (520)
T 2z7x_B          477 TNPWDCSC  484 (520)
T ss_dssp             SSCBCCCH
T ss_pred             CCCCcccC
Confidence            99988753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=3.1e-21  Score=170.78  Aligned_cols=191  Identities=22%  Similarity=0.160  Sum_probs=134.1

Q ss_pred             CCCceEEEEeCCCcce--eccCccCCCC--CCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCC-ccccCCC
Q 048688           51 HSHKVTALNISGLNLT--GTIPSQLGNL--SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFP-SFIFNKS  125 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~--~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~  125 (244)
                      .+++++.|++++|.+.  ......|..+  ..|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..++
T Consensus       351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~  430 (680)
T 1ziw_A          351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE  430 (680)
T ss_dssp             TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT
T ss_pred             cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc
Confidence            4678999999998754  2233344433  589999999999998888899999999999999999976554 5778888


Q ss_pred             CCCEEEccCCCCCCcCChhhh--------------------------CCCCCCcEEEcccccccccCCccccCCCCCcEE
Q 048688          126 SLQHLDFSRNTLSGEIPANIC--------------------------SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRIL  179 (244)
Q Consensus       126 ~L~~L~l~~~~~~~~l~~~~~--------------------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  179 (244)
                      +|++|++++|.+. .++...+                          ..+++|++|++++|.+++..+..+..+++|+.|
T Consensus       431 ~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L  509 (680)
T 1ziw_A          431 NIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL  509 (680)
T ss_dssp             TCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccEEecCCCCcc-eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence            8888888888765 3222222                          455666666666666664444556666667777


Q ss_pred             eeccCcccccCC--------ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          180 SLAYNDFSGAVP--------KDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       180 ~l~~n~~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ++++|.+++..+        ..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++++.+..|
T Consensus       510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  580 (680)
T 1ziw_A          510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF  580 (680)
T ss_dssp             ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence            777766653211        125566777777777777763333457777888888888888887666544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=2.6e-22  Score=180.63  Aligned_cols=184  Identities=19%  Similarity=0.264  Sum_probs=163.1

Q ss_pred             CCCceEEEEeCCCccee-----------------ccCccCC--CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC
Q 048688           51 HSHKVTALNISGLNLTG-----------------TIPSQLG--NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN  111 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~  111 (244)
                      .+++++.|++++|.+++                 .+|+.+.  .+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            46889999999999997                 3888888  9999999999999998899999999999999999999


Q ss_pred             c-cCC-CCCccccC-------CCCCCEEEccCCCCCCcCCh--hhhCCCCCCcEEEcccccccccCCccccCCCCCcEEe
Q 048688          112 Q-LTG-VFPSFIFN-------KSSLQHLDFSRNTLSGEIPA--NICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILS  180 (244)
Q Consensus       112 ~-l~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~l~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  180 (244)
                      . +++ .+|..+..       +++|++|++++|.+. .+|.  .+ ..+++|++|++++|.+. .+| .++.+++|+.|+
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence            8 887 67765544       459999999999998 8988  56 89999999999999998 788 899999999999


Q ss_pred             eccCcccccCCccccCCCC-CCEEEccCCcccccCCccccCCCC--CCEEEccCCccCcccCC
Q 048688          181 LAYNDFSGAVPKDIGNLTK-LMGLYLGRNRLQGEIPREFGNLAE--LEQMSLAENNLQALLLY  240 (244)
Q Consensus       181 l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~  240 (244)
                      +++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++.+.+|.
T Consensus       602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence            9999998 78888888998 999999999998 78887776654  99999999999887664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=2.1e-21  Score=168.42  Aligned_cols=161  Identities=27%  Similarity=0.363  Sum_probs=134.6

Q ss_pred             CCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC--CCccccCCCCCCEEEccCCCCCCcCChhhhCCCCC
Q 048688           74 GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV--FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF  151 (244)
Q Consensus        74 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~  151 (244)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+.+.+|...+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            6778899999999999877888889999999999999998853  24567889999999999999985588777688899


Q ss_pred             CcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEEcc
Q 048688          152 LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPRE-FGNLAELEQMSLA  230 (244)
Q Consensus       152 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~  230 (244)
                      |++|++++|.+++..|..+.  ++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|.. +..+++|+.|+++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence            99999999998766665544  68999999999988 56766668999999999999998 56655 8889999999999


Q ss_pred             CCccCccc
Q 048688          231 ENNLQALL  238 (244)
Q Consensus       231 ~n~l~~~~  238 (244)
                      +|++.+..
T Consensus       506 ~N~~~c~c  513 (562)
T 3a79_B          506 DNPWDCTC  513 (562)
T ss_dssp             SCCBCCCH
T ss_pred             CCCcCCCc
Confidence            99988743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=8.2e-22  Score=170.96  Aligned_cols=188  Identities=25%  Similarity=0.282  Sum_probs=154.6

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCC--CccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSI--PSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      ++++.|+++++.+.+..+.  ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+. +..+++|++|
T Consensus       325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L  401 (570)
T 2z63_A          325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL  401 (570)
T ss_dssp             SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred             cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEE
Confidence            4455555555544433332  56788999999998887433  66778899999999999998854444 8899999999


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc-ccCCccccCCCCCCEEEccCCc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS-GAVPKDIGNLTKLMGLYLGRNR  209 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~  209 (244)
                      ++++|.+.+..+...+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.
T Consensus       402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            999999875555455588999999999999998888889999999999999999987 4678889999999999999999


Q ss_pred             ccccCCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688          210 LQGEIPREFGNLAELEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       210 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  243 (244)
                      +++..|..+..+++|+.|++++|+++++.|..|.
T Consensus       482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence            9987798999999999999999999998877653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.87  E-value=4.5e-21  Score=173.58  Aligned_cols=192  Identities=20%  Similarity=0.228  Sum_probs=118.5

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCcc--ccCCCCCcEEEecCCccCCCCC-ccccCCCCC
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSA--IFTTYTLKDVSFRENQLTGVFP-SFIFNKSSL  127 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L  127 (244)
                      .+++++.|++++|.+.+..|..|..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..+ ..+..+++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            4567778888888777777777888888888888888777545544  7777788888888777765543 456777777


Q ss_pred             CEEEccCCCCCCcCChhhh-------------------------CC----------------------------------
Q 048688          128 QHLDFSRNTLSGEIPANIC-------------------------SS----------------------------------  148 (244)
Q Consensus       128 ~~L~l~~~~~~~~l~~~~~-------------------------~~----------------------------------  148 (244)
                      ++|++++|.+.+..+..+.                         ..                                  
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            7777777766532222110                         00                                  


Q ss_pred             ----------------------------------CCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc
Q 048688          149 ----------------------------------LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI  194 (244)
Q Consensus       149 ----------------------------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~  194 (244)
                                                        .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                              0233444444444433334445555666666666666655555556


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          195 GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       195 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ..+++|++|++++|.+++..+..+..+++|+.|++++|.++++.+..|
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  358 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF  358 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh
Confidence            666666666666666655555566666666666666666665555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2.6e-21  Score=155.71  Aligned_cols=172  Identities=23%  Similarity=0.345  Sum_probs=141.3

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      .+++++.|++++|.+.+.. . +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+. +. +..+++|++|
T Consensus        61 ~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L  134 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVL  134 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEE
T ss_pred             ccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEE
Confidence            4678999999999888543 3 8899999999999999873 33 688899999999999998854 33 7889999999


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      ++++|.+. .++. + ..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++..+  +..+++|++|++++|.+
T Consensus       135 ~l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          135 YLDLNQIT-NISP-L-AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             ECCSSCCC-CCGG-G-GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCC
T ss_pred             ECCCCccC-cCcc-c-cCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCcc
Confidence            99999987 5554 4 778999999999998874 444 8889999999999999875433  77889999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCccCcc
Q 048688          211 QGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ++..  .+..+++|+.|++++|++++.
T Consensus       208 ~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          208 SDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             Cccc--cccCCCCCCEEEccCCeeecC
Confidence            8543  378899999999999998773

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=8.5e-21  Score=154.22  Aligned_cols=187  Identities=22%  Similarity=0.224  Sum_probs=138.7

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      ..++++.|++++|.+++..|..|..+++|++|++++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|++|
T Consensus        76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  152 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI  152 (332)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred             CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence            5678899999999888777888888899999988888876 4554433  455555555555554433344444445544


Q ss_pred             EccCCC----------------------------------------------CCCcCChhhhCCCCCCcEEEcccccccc
Q 048688          131 DFSRNT----------------------------------------------LSGEIPANICSSLPFLDYLYLSKNMLHG  164 (244)
Q Consensus       131 ~l~~~~----------------------------------------------~~~~l~~~~~~~~~~L~~L~l~~~~~~~  164 (244)
                      ++++|.                                              +. .++...+..+++|++|++++|.+.+
T Consensus       153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             ECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCc
Confidence            444443                                              33 2232333678899999999999997


Q ss_pred             cCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccC------CCCCCEEEccCCccC--c
Q 048688          165 GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGN------LAELEQMSLAENNLQ--A  236 (244)
Q Consensus       165 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~--~  236 (244)
                      ..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..      ...|+.|++++|++.  +
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence            77778999999999999999998 77888999999999999999999665665554      367899999999998  4


Q ss_pred             ccCCCC
Q 048688          237 LLLYSF  242 (244)
Q Consensus       237 ~~~~~~  242 (244)
                      +.|..|
T Consensus       311 ~~~~~~  316 (332)
T 2ft3_A          311 VQPATF  316 (332)
T ss_dssp             SCGGGG
T ss_pred             cCcccc
Confidence            555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=6.5e-21  Score=154.72  Aligned_cols=177  Identities=23%  Similarity=0.252  Sum_probs=125.8

Q ss_pred             eEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCC--CCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           55 VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG--SIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        55 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      ++.|++++|.+.+..+..|..+++|++|++++|.+..  ..+..+..+++|++|++++|.+.. +|..+  .++|++|++
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l  199 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHL  199 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEEC
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEEC
Confidence            3333444443333333345555666666666655532  344555666666666666666653 33332  267788888


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      ++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus       200 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          200 DGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             TTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence            888877 443344488999999999999998777778999999999999999998 778888999999999999999986


Q ss_pred             cCCccccC------CCCCCEEEccCCccCc
Q 048688          213 EIPREFGN------LAELEQMSLAENNLQA  236 (244)
Q Consensus       213 ~~~~~l~~------l~~L~~L~l~~n~l~~  236 (244)
                      ..+..+..      ...++.|++++|++..
T Consensus       278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cChhhcCCcccccccccccceEeecCcccc
Confidence            55555543      3778999999999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=8e-22  Score=168.11  Aligned_cols=184  Identities=21%  Similarity=0.225  Sum_probs=125.1

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCc------------
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPS------------  119 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~------------  119 (244)
                      .++++.|++++|.+.+..|..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+.            
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            3467777777777776666677777777777777777764333  66677777777776665532110            


Q ss_pred             ----cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCcccc-CCCCCcEEeeccCcccccCCccc
Q 048688          120 ----FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS-NCTYLRILSLAYNDFSGAVPKDI  194 (244)
Q Consensus       120 ----~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~  194 (244)
                          ....+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. + ..
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~  187 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQ  187 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-cc
Confidence                01234667777777777763333333 6677888888888888766666664 677888888888887754 2 23


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          195 GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       195 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++++ |..+
T Consensus       188 ~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~l-p~~l  233 (487)
T 3oja_A          188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLI-EKAL  233 (487)
T ss_dssp             CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEE-CTTC
T ss_pred             ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCccc-chhh
Confidence            357888888888888884 444577888888888888888874 4433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=1.3e-20  Score=145.29  Aligned_cols=161  Identities=24%  Similarity=0.297  Sum_probs=90.1

Q ss_pred             CCCCCCCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCcc
Q 048688           34 WNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL  113 (244)
Q Consensus        34 w~~~~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l  113 (244)
                      |..+...|.|.++.|..            +.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        12 ~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l   76 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL   76 (229)
T ss_dssp             CCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence            66777899999988853            2222 2333222  4555566655555544455555555555666555555


Q ss_pred             CCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCcc
Q 048688          114 TGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKD  193 (244)
Q Consensus       114 ~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  193 (244)
                      ....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..
T Consensus        77 ~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~  154 (229)
T 3e6j_A           77 GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA  154 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred             CCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence            5443344455555666666555555 444444455555555555555555 45555555555555555555555444444


Q ss_pred             ccCCCCCCEEEccCCccc
Q 048688          194 IGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       194 ~~~~~~L~~L~l~~n~l~  211 (244)
                      +..+++|+.|++.+|++.
T Consensus       155 ~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTCTTCCEEECTTSCBC
T ss_pred             HhCCCCCCEEEeeCCCcc
Confidence            555555555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=1.9e-22  Score=162.95  Aligned_cols=179  Identities=22%  Similarity=0.197  Sum_probs=115.1

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCc----------------cccCCCCCcEEEecCCccC
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPS----------------AIFTTYTLKDVSFRENQLT  114 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~----------------~l~~l~~L~~L~l~~~~l~  114 (244)
                      ..++++.|++++|.+.+..+  +..+++|++|++++|.+.+..+.                ....+++|++|++++|.++
T Consensus        56 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~  133 (317)
T 3o53_A           56 PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT  133 (317)
T ss_dssp             TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred             CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence            35677788888887765443  77777788877777766521100                0112345555666666665


Q ss_pred             CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc
Q 048688          115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI  194 (244)
Q Consensus       115 ~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~  194 (244)
                      +..+..+..+++|++|++++|.+.+..+..++..+++|++|++++|.++.. +. ...+++|+.|++++|.+++ +|..+
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~  210 (317)
T 3o53_A          134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEF  210 (317)
T ss_dssp             SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred             CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhh
Confidence            554555666677777777777776333344434567777777777777633 22 2246777777777777764 34446


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccC
Q 048688          195 GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ  235 (244)
Q Consensus       195 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  235 (244)
                      ..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus       211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            77777888888888777 56666777778888888888776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.5e-20  Score=151.25  Aligned_cols=173  Identities=23%  Similarity=0.361  Sum_probs=148.8

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +++++.|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. + .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence            5689999999999884 44 6889999999999999998 4444 89999999999999999854 3 588999999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.+. .++. + ..+++|++|++++|.+++. +. +..+++|+.|++++|.+++. +. +..+++|+.|++++|.++
T Consensus       114 l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          114 LTSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CTTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCC-Cchh-h-cCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC
Confidence            9999998 5654 4 8899999999999999843 33 88999999999999999854 43 889999999999999998


Q ss_pred             ccCCccccCCCCCCEEEccCCccCcccC
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQALLL  239 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~  239 (244)
                      + ++. +..+++|+.|++++|++++..+
T Consensus       187 ~-~~~-l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          187 D-ISP-LASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             C-CGG-GGGCTTCCEEECTTSCCCBCGG
T ss_pred             c-Chh-hcCCCCCCEEEccCCccCcccc
Confidence            5 443 8899999999999999998764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=5.9e-21  Score=164.03  Aligned_cols=84  Identities=27%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCC-CCCccccCCCCCCE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG-VFPSFIFNKSSLQH  129 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~  129 (244)
                      .++++++|++++|.+++..|..|..+++|++|++++|.+. .+|..  .+++|++|++++|.+++ ..|..+..+++|++
T Consensus        43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~  119 (520)
T 2z7x_B           43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF  119 (520)
T ss_dssp             TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred             ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence            3566777777777777666777777777777777777776 44444  56677777777777665 34566666666666


Q ss_pred             EEccCCCC
Q 048688          130 LDFSRNTL  137 (244)
Q Consensus       130 L~l~~~~~  137 (244)
                      |++++|.+
T Consensus       120 L~L~~n~l  127 (520)
T 2z7x_B          120 LGLSTTHL  127 (520)
T ss_dssp             EEEEESSC
T ss_pred             EEecCccc
Confidence            66666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=2.6e-20  Score=143.58  Aligned_cols=155  Identities=25%  Similarity=0.305  Sum_probs=138.0

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688           79 LQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS  158 (244)
Q Consensus        79 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~  158 (244)
                      -+.++.+++.+. .+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence            567888888887 777655  389999999999999888888999999999999999997 8887777899999999999


Q ss_pred             cccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCccc
Q 048688          159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  238 (244)
                      +|.++...+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99999666677899999999999999998 67888899999999999999999666677899999999999999998754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.86  E-value=3.8e-21  Score=158.07  Aligned_cols=176  Identities=26%  Similarity=0.241  Sum_probs=144.4

Q ss_pred             EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCcccc-CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688           57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIF-TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN  135 (244)
Q Consensus        57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  135 (244)
                      .++++++.++ .+|..+.  ..+++|++++|.+.+..+..+. .+++|++|++++|.++...+..|..+++|++|+|++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            5777888887 4665543  4689999999999866666676 8999999999999999777778899999999999999


Q ss_pred             CCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc---cCCCCCCEEEccCCcccc
Q 048688          136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI---GNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~  212 (244)
                      .+. .++...+..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..+   ..+++|+.|++++|.++.
T Consensus        99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            998 7777766889999999999999987778889999999999999999985444444   568899999999999985


Q ss_pred             cCCccccCCCC--CCEEEccCCccCc
Q 048688          213 EIPREFGNLAE--LEQMSLAENNLQA  236 (244)
Q Consensus       213 ~~~~~l~~l~~--L~~L~l~~n~l~~  236 (244)
                      ..+..+..++.  ++.|++++|++.+
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             cCHHHhhhccHhhcceEEecCCCccC
Confidence            54556777776  4889999998865

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=1.8e-20  Score=143.60  Aligned_cols=152  Identities=22%  Similarity=0.297  Sum_probs=131.9

Q ss_pred             EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC
Q 048688           57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT  136 (244)
Q Consensus        57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  136 (244)
                      .++++++.++ .+|..+.  +.|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            4666777777 4666554  689999999999986666688999999999999999998888899999999999999999


Q ss_pred             CCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          137 LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       137 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      ++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus        92 l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            98 8888877889999999999999987778889999999999999999987777778889999999999998863

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=7.1e-21  Score=147.64  Aligned_cols=176  Identities=19%  Similarity=0.179  Sum_probs=150.1

Q ss_pred             CCCceEEEEeCCCc-ceeccCccCCCCCCCCEEeCCC-CCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCC
Q 048688           51 HSHKVTALNISGLN-LTGTIPSQLGNLSSLQSLDLSF-NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQ  128 (244)
Q Consensus        51 ~~~~l~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~  128 (244)
                      ..++++.|++++|. ++...+..|..+++|++|++++ |.+....+..|..+++|++|++++|.+++ +|. +..+++|+
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~  130 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD  130 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence            47889999999997 8877777899999999999998 99986666788999999999999999985 565 78888898


Q ss_pred             ---EEEccCC-CCCCcCChhhhCCCCCCc-EEEcccccccccCCccccCCCCCcEEeeccCc-ccccCCccccCC-CCCC
Q 048688          129 ---HLDFSRN-TLSGEIPANICSSLPFLD-YLYLSKNMLHGGIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNL-TKLM  201 (244)
Q Consensus       129 ---~L~l~~~-~~~~~l~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~  201 (244)
                         +|++++| .+. .++...+..+++|+ +|++++|.++ .+|......++|+.|++++|. ++...+..+..+ ++|+
T Consensus       131 ~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~  208 (239)
T 2xwt_C          131 IFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS  208 (239)
T ss_dssp             SEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred             cccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence               9999999 887 78877668999999 9999999998 555443333899999999995 886667788888 9999


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEEccCCc
Q 048688          202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENN  233 (244)
Q Consensus       202 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  233 (244)
                      .|++++|.++ .+|..  .+++|+.|++.++.
T Consensus       209 ~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          209 LLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             EEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            9999999998 55543  67889999998763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=2e-20  Score=143.41  Aligned_cols=152  Identities=20%  Similarity=0.241  Sum_probs=125.7

Q ss_pred             EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688           57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN  135 (244)
Q Consensus        57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  135 (244)
                      .++++++.++ .+|..+.  ..+++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            6788888887 4666553  457899999999985534 45788999999999999998777778888999999999999


Q ss_pred             CCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      .++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++..
T Consensus        92 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            997 6666666888999999999999987778888888999999999999887778888888899999999988864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.6e-21  Score=156.99  Aligned_cols=180  Identities=18%  Similarity=0.229  Sum_probs=149.1

Q ss_pred             CCCceEEEEeCCCcceeccC----ccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCC--C--Ccccc
Q 048688           51 HSHKVTALNISGLNLTGTIP----SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGV--F--PSFIF  122 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~--~--~~~~~  122 (244)
                      ...+++.|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .  +..+.
T Consensus       115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            46789999999999886444    3455789999999999999877778999999999999999987642  1  22346


Q ss_pred             CCCCCCEEEccCCCCCCcCChh---hhCCCCCCcEEEcccccccccCCccccCC---CCCcEEeeccCcccccCCccccC
Q 048688          123 NKSSLQHLDFSRNTLSGEIPAN---ICSSLPFLDYLYLSKNMLHGGIPSTLSNC---TYLRILSLAYNDFSGAVPKDIGN  196 (244)
Q Consensus       123 ~l~~L~~L~l~~~~~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~  196 (244)
                      .+++|++|++++|.++ .++..   ++..+++|++|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..+. 
T Consensus       195 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-  271 (310)
T 4glp_A          195 KFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-  271 (310)
T ss_dssp             SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred             cCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence            7899999999999997 55443   44678999999999999997778777766   69999999999998 5676654 


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          197 LTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       197 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                       ++|+.|++++|++++ +|. +..+++|+.|++++|+++.
T Consensus       272 -~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          272 -AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             -CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence             799999999999984 343 6788999999999999875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=2.3e-20  Score=143.02  Aligned_cols=148  Identities=23%  Similarity=0.259  Sum_probs=121.3

Q ss_pred             CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEec
Q 048688           39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFR  109 (244)
Q Consensus        39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  109 (244)
                      -.|.+..+.|..         ...+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|+++
T Consensus         9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B            9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            445666666642         23578899999999987777788999999999999999987778889999999999999


Q ss_pred             CCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688          110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS  187 (244)
Q Consensus       110 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  187 (244)
                      +|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99998666666788999999999999998 555555588899999999999998666667888899999999999875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=2.1e-20  Score=149.24  Aligned_cols=171  Identities=25%  Similarity=0.364  Sum_probs=146.1

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +.+++.|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ .+ .+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            5678999999999874 33 488899999999999999844 43 8899999999999999985 33 488999999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.+. .+ ..+ ..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       119 L~~n~i~-~~-~~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          119 LEHNGIS-DI-NGL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CTTSCCC-CC-GGG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCC-CC-hhh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            9999998 55 344 7899999999999999843  578899999999999999985544  888999999999999998


Q ss_pred             ccCCccccCCCCCCEEEccCCccCcc
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      + ++ .+..+++|+.|++++|+++..
T Consensus       192 ~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          192 D-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             B-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             C-Ch-hhccCCCCCEEECcCCcccCC
Confidence            4 44 488999999999999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=1.9e-20  Score=162.35  Aligned_cols=107  Identities=25%  Similarity=0.317  Sum_probs=85.5

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|..  .+++|++|+
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            367888999999888777788888999999999999888667788888889999999988887 45544  788888888


Q ss_pred             ccCCCCCCcCC--hhhhCCCCCCcEEEccccccc
Q 048688          132 FSRNTLSGEIP--ANICSSLPFLDYLYLSKNMLH  163 (244)
Q Consensus       132 l~~~~~~~~l~--~~~~~~~~~L~~L~l~~~~~~  163 (244)
                      +++|.+. .++  ..+ ..+++|++|++++|.+.
T Consensus       128 Ls~N~l~-~l~~p~~~-~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          128 LSFNDFD-VLPVCKEF-GNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCSSCCS-BCCCCGGG-GGCTTCCEEEEECSBCC
T ss_pred             CCCCCcc-ccCchHhh-cccCcccEEecCCCccc
Confidence            8888887 443  444 77888888888877764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=2.7e-20  Score=163.03  Aligned_cols=180  Identities=22%  Similarity=0.163  Sum_probs=112.3

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      ..++.|+|++|.+++..+..|..+++|++|++++|.+.+..+.+|..+++|++|+|++|.+++..+..|..+++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            35677777777776655666777777777777777776445556667777777777777766555555666777777777


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeeccCcccccCCccccCCCC----CCEEEccC
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTK----LMGLYLGR  207 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~----L~~L~l~~  207 (244)
                      ++|.++ .++...+..+++|++|++++|.++. ..|..++.+++|++|++++|.+++..+..+..+.+    ...++++.
T Consensus       132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            777766 5555544666777777777776653 34556666677777777777766555555443332    23566666


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcc
Q 048688          208 NRLQGEIPREFGNLAELEQMSLAENNL  234 (244)
Q Consensus       208 n~l~~~~~~~l~~l~~L~~L~l~~n~l  234 (244)
                      |.+....+ .......+..+++.+|..
T Consensus       211 n~l~~i~~-~~~~~~~~~~l~l~~n~~  236 (635)
T 4g8a_A          211 NPMNFIQP-GAFKEIRLHKLTLRNNFD  236 (635)
T ss_dssp             CCCCEECT-TTTTTCEEEEEEEESCCS
T ss_pred             CcccccCc-ccccchhhhhhhhhcccc
Confidence            66653323 333334456666666643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=1.8e-20  Score=153.07  Aligned_cols=176  Identities=24%  Similarity=0.427  Sum_probs=121.0

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      ..++++.|+++++.+....+  +..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+  +..+++|++|
T Consensus       153 ~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L  226 (347)
T 4fmz_A          153 NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSL  226 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             hCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEE
Confidence            45678888888887764332  677788888888888776 3332 6677777777777777764433  5667777777


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      ++++|.+. .++. + ..+++|++|++++|.++. + ..+..+++|+.|++++|.+++.  +.+..+++|+.|++++|.+
T Consensus       227 ~l~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          227 KIGNNKIT-DLSP-L-ANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             ECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             EccCCccC-CCcc-h-hcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcC
Confidence            77777776 4444 3 667777777777777663 2 3466677777777777776643  3466677777777777777


Q ss_pred             cccCCccccCCCCCCEEEccCCccCcccC
Q 048688          211 QGEIPREFGNLAELEQMSLAENNLQALLL  239 (244)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  239 (244)
                      ++..+..+..+++|+.|++++|++++..|
T Consensus       300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CCcChhHhhccccCCEEEccCCccccccC
Confidence            76666667777777777777777777655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=6.5e-21  Score=162.50  Aligned_cols=179  Identities=22%  Similarity=0.193  Sum_probs=140.5

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCc----------------cccCCCCCcEEEecCCccC
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPS----------------AIFTTYTLKDVSFRENQLT  114 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~----------------~l~~l~~L~~L~l~~~~l~  114 (244)
                      .+++++.|++++|.+++..+  |..+++|++|++++|.+.+..+.                ....+++|+.|++++|.++
T Consensus        56 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~  133 (487)
T 3oja_A           56 PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT  133 (487)
T ss_dssp             TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCC
T ss_pred             CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCC
Confidence            35567777777776665443  66666666666666655421100                1123578999999999999


Q ss_pred             CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc
Q 048688          115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI  194 (244)
Q Consensus       115 ~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~  194 (244)
                      +..|..+..+++|++|++++|.+++..|..+...+++|++|++++|.+++. +. +..+++|+.|++++|.+++. |..+
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~  210 (487)
T 3oja_A          134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEF  210 (487)
T ss_dssp             SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGG
T ss_pred             CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhH
Confidence            888888889999999999999998666766645789999999999999854 32 34689999999999999864 4458


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccC
Q 048688          195 GNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ  235 (244)
Q Consensus       195 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  235 (244)
                      ..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus       211 ~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            89999999999999999 57888999999999999999998

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=4.4e-20  Score=150.75  Aligned_cols=171  Identities=24%  Similarity=0.385  Sum_probs=108.8

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      .++++.|++++|.+.+. +. +..+++|+++++++|.+.+..+  +..+++|++|++++|.+....+  +..+++|++|+
T Consensus       176 l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  249 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE  249 (347)
T ss_dssp             CTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence            45677777777766632 22 6666777777777776653322  6666777777777777664322  66677777777


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.+. .+ ..+ ..+++|++|++++|.++. + ..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus       250 l~~n~l~-~~-~~~-~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          250 IGTNQIS-DI-NAV-KDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             CCSSCCC-CC-GGG-TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             CCCCccC-CC-hhH-hcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            7777765 44 223 566777777777776663 2 34566677777777777766566666666777777777777776


Q ss_pred             ccCCccccCCCCCCEEEccCCccC
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQ  235 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~  235 (244)
                      +..|  +..+++|+.|++++|+++
T Consensus       325 ~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          325 DIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCGG--GGGCTTCSEESSSCC---
T ss_pred             cccC--hhhhhccceeehhhhccc
Confidence            4433  666777777777777664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=2.1e-20  Score=163.71  Aligned_cols=180  Identities=23%  Similarity=0.223  Sum_probs=151.9

Q ss_pred             EeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCC
Q 048688           59 NISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLS  138 (244)
Q Consensus        59 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  138 (244)
                      +-++.+++ .+|..+.  ..+++|+|++|.|+...+.+|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++
T Consensus        37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence            34445555 5665542  47999999999999666778999999999999999999887888999999999999999998


Q ss_pred             CcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccccc-CCccccCCCCCCEEEccCCcccccCCcc
Q 048688          139 GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA-VPKDIGNLTKLMGLYLGRNRLQGEIPRE  217 (244)
Q Consensus       139 ~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~  217 (244)
                       .++...|..+++|++|++++|.++...+..|+++++|++|++++|.++.. .|..+..+++|++|++++|.+++..+..
T Consensus       114 -~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          114 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             -EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             -CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence             88888889999999999999999866666799999999999999998753 5777888999999999999999776766


Q ss_pred             ccCCCC----CCEEEccCCccCcccCCCC
Q 048688          218 FGNLAE----LEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       218 l~~l~~----L~~L~l~~n~l~~~~~~~~  242 (244)
                      +..+.+    ...++++.|++..+.+..+
T Consensus       193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~  221 (635)
T 4g8a_A          193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAF  221 (635)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred             ccchhhhhhhhhhhhcccCcccccCcccc
Confidence            654433    4578999999998776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=3.8e-20  Score=159.87  Aligned_cols=183  Identities=26%  Similarity=0.393  Sum_probs=157.3

Q ss_pred             CcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCc
Q 048688           40 VCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPS  119 (244)
Q Consensus        40 ~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~  119 (244)
                      .|.|.++ |          +.+++.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.
T Consensus         3 ~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4777776 5          34566666 5666554  7999999999999977788999999999999999999988888


Q ss_pred             cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeeccCc-ccccCCccccCC
Q 048688          120 FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG-GIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNL  197 (244)
Q Consensus       120 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~  197 (244)
                      .+..+++|++|++++|.+. .++...+..+++|++|++++|.+++ ..|..++.+++|++|++++|. +....+..+..+
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l  147 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL  147 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             hccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence            8999999999999999998 6666655899999999999999985 356789999999999999998 443444678899


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          198 TKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       198 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ++|++|++++|.+++..|..+..+++|+.|++++|.+..+
T Consensus       148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  187 (549)
T 2z81_A          148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL  187 (549)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred             cccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence            9999999999999988899999999999999999987543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=1.6e-19  Score=138.33  Aligned_cols=133  Identities=18%  Similarity=0.218  Sum_probs=78.1

Q ss_pred             ceEEEEeCCCcceeccC-ccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           54 KVTALNISGLNLTGTIP-SQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      .++.|++++|.+++..+ ..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            45566666666654432 34556666666666666665444445666666666666666666555555566666666666


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS  187 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  187 (244)
                      ++|.+. .+++..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus       113 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            666665 333333355666666666666666544556666666666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=5.8e-20  Score=138.41  Aligned_cols=154  Identities=17%  Similarity=0.244  Sum_probs=110.1

Q ss_pred             CCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCc
Q 048688           74 GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLD  153 (244)
Q Consensus        74 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~  153 (244)
                      ..+++|++|++++|.+. .++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..+ ..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence            45567777777777776 445 5677777888888777654  22356677888888888887764455555 6777888


Q ss_pred             EEEcccccccccCCccccCCCCCcEEeeccCc-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688          154 YLYLSKNMLHGGIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN  232 (244)
Q Consensus       154 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  232 (244)
                      +|++++|.+++..+..+..+++|+.|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            88888888776666777788888888888887 55 444 57778888888888888874 44 6778888888888888


Q ss_pred             ccCc
Q 048688          233 NLQA  236 (244)
Q Consensus       233 ~l~~  236 (244)
                      ++..
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            8764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=1.8e-19  Score=152.92  Aligned_cols=106  Identities=29%  Similarity=0.398  Sum_probs=49.7

Q ss_pred             cCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCC
Q 048688          122 FNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM  201 (244)
Q Consensus       122 ~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  201 (244)
                      ..+++|++|++++|.+. .++. + ..+++|++|++++|.+.+..|  +..+++|+.|++++|.+++.  ..+..+++|+
T Consensus       284 ~~l~~L~~L~L~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  356 (466)
T 1o6v_A          284 AGLTALTNLELNENQLE-DISP-I-SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN  356 (466)
T ss_dssp             TTCTTCSEEECCSSCCS-CCGG-G-GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             cCCCccCeEEcCCCccc-Cchh-h-cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence            33444444444444443 2222 1 334444444444444443222  34444555555555544422  2344555555


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          202 GLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       202 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      .|++++|.+++..|  +..+++|+.|++++|++++
T Consensus       357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             EEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            55555555554333  4555555555555555555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=1.5e-19  Score=157.37  Aligned_cols=171  Identities=25%  Similarity=0.376  Sum_probs=143.8

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +.+++.|+++++.+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+ ++ .+..+++|++|+
T Consensus        42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            5678889999998874 44 58889999999999999984443  8899999999999999885 33 678899999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      |++|.+. .++ .+ ..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.++
T Consensus       116 Ls~N~l~-~l~-~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          116 LEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CTTSCCC-CCG-GG-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ecCCCCC-CCc-cc-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            9999997 553 44 7889999999999999843  578889999999999999986544  888999999999999998


Q ss_pred             ccCCccccCCCCCCEEEccCCccCcc
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      + ++ .+..+++|+.|+|++|++...
T Consensus       189 ~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          189 D-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             B-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             C-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            4 43 588899999999999998775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1e-19  Score=148.91  Aligned_cols=200  Identities=17%  Similarity=0.128  Sum_probs=152.3

Q ss_pred             cceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC-ccccCCCCCcE-EEec
Q 048688           41 CNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP-SAIFTTYTLKD-VSFR  109 (244)
Q Consensus        41 c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~-L~l~  109 (244)
                      |.+..+.|..         -+.+++.|++++|.++.+.+.+|.++++|++|++++|.+.+.++ .+|..++++++ +.+.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            5566677742         23578999999999997667789999999999999999865555 46788888776 5666


Q ss_pred             CCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccc-ccccccCCccccCCC-CCcEEeeccCccc
Q 048688          110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK-NMLHGGIPSTLSNCT-YLRILSLAYNDFS  187 (244)
Q Consensus       110 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~n~~~  187 (244)
                      +|.+....|..|..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..+..+. .++.|++++|.++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            78898777888999999999999999998 66665545666788888866 456544445566654 6888999999988


Q ss_pred             ccCCccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          188 GAVPKDIGNLTKLMGLYLGR-NRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       188 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      .. +.......+|+++++.+ |.++...++.|..+++|+.|++++|+|+.+.+..|
T Consensus       168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          168 EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             CC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            54 44444556788999875 66664444567889999999999999998766554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.82  E-value=2.5e-19  Score=152.03  Aligned_cols=174  Identities=27%  Similarity=0.429  Sum_probs=150.5

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      .+++++.|++++|.+.+..+  +..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+  +..+++|++|
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  270 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL  270 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence            46789999999999886544  7789999999999999973 3 468899999999999999986544  7889999999


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      ++++|.+. .++. + ..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..|  +..+++|+.|++++|.+
T Consensus       271 ~l~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l  343 (466)
T 1o6v_A          271 KLGANQIS-NISP-L-AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV  343 (466)
T ss_dssp             ECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred             ECCCCccC-cccc-c-cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence            99999998 5555 4 789999999999999985433  7889999999999999986554  77899999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCccCcccC
Q 048688          211 QGEIPREFGNLAELEQMSLAENNLQALLL  239 (244)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  239 (244)
                      ++.  ..+..+++|+.|++++|++++..|
T Consensus       344 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          344 SDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CCc--hhhccCCCCCEEeCCCCccCccch
Confidence            854  468899999999999999999877

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=4.4e-20  Score=145.27  Aligned_cols=151  Identities=23%  Similarity=0.308  Sum_probs=75.5

Q ss_pred             CCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCC
Q 048688           73 LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL  152 (244)
Q Consensus        73 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L  152 (244)
                      +..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++...  . ++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~--~-~~L  108 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIP--S-ACL  108 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCC--C-SSC
T ss_pred             hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCccc--c-Ccc
Confidence            444555555555555554 333 44555555555555555553322  445555555555555554 343321  1 455


Q ss_pred             cEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688          153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN  232 (244)
Q Consensus       153 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  232 (244)
                      ++|++++|.+++ ++ .+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|
T Consensus       109 ~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          109 SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred             cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence            555555555542 22 345555555555555555432 2 344555555555555555532  34455555555555555


Q ss_pred             ccCcc
Q 048688          233 NLQAL  237 (244)
Q Consensus       233 ~l~~~  237 (244)
                      ++++.
T Consensus       183 ~~~~~  187 (263)
T 1xeu_A          183 KCVNE  187 (263)
T ss_dssp             EEECC
T ss_pred             cccCC
Confidence            55443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=2.5e-18  Score=145.44  Aligned_cols=171  Identities=23%  Similarity=0.230  Sum_probs=105.0

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +++++.|++++|.+++. +  +..+++|++|++++|.+.+ ++  +..+++|++|++++|.+++. +  +..+++|++|+
T Consensus        63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~  133 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLN  133 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEE
Confidence            45666777777766642 2  5666666666666666653 22  55666666666666666542 2  55566666666


Q ss_pred             ccCCCCCCcCChh-------------------hhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCc
Q 048688          132 FSRNTLSGEIPAN-------------------ICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPK  192 (244)
Q Consensus       132 l~~~~~~~~l~~~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  192 (244)
                      +++|.++ .++-.                   -+..+++|++|++++|.+++ +|  +..+++|+.|++++|.+++.   
T Consensus       134 l~~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---  206 (457)
T 3bz5_A          134 CARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---  206 (457)
T ss_dssp             CTTSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---
T ss_pred             CCCCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---
Confidence            6666554 22200                   01345556666666666653 33  55666677777777766643   


Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCC
Q 048688          193 DIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYS  241 (244)
Q Consensus       193 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  241 (244)
                      .+..+++|+.|++++|.+++ +|  +..+++|+.|++++|+++++.+..
T Consensus       207 ~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~  252 (457)
T 3bz5_A          207 DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST  252 (457)
T ss_dssp             CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred             ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH
Confidence            25667777788888887774 45  677778888888888887765433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=2.9e-19  Score=154.31  Aligned_cols=186  Identities=23%  Similarity=0.336  Sum_probs=111.9

Q ss_pred             hcCCCCCCCCCc-----ceeee-eeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCC
Q 048688           30 LAKNWNTSAPVC-----NWTGV-TCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTL  103 (244)
Q Consensus        30 ~~~~w~~~~~~c-----~~~g~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L  103 (244)
                      +.. |......|     .|.++ .|.  ..+++.|+++++.+++ +|..+.  ++|++|++++|.+. .+|   ..+++|
T Consensus        33 l~~-W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L  102 (571)
T 3cvr_A           33 WDK-WEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASL  102 (571)
T ss_dssp             HHH-HHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred             HHH-HhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCC
Confidence            344 66666666     57777 453  2356667777766664 444332  45666666666555 444   234455


Q ss_pred             cEEEecCCccCCCCCcccc------------------CCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccccccc
Q 048688          104 KDVSFRENQLTGVFPSFIF------------------NKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGG  165 (244)
Q Consensus       104 ~~L~l~~~~l~~~~~~~~~------------------~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~  165 (244)
                      ++|++++|.+++ +|. +.                  .+++|++|++++|.++ .+|.    .+++|++|++++|.+++ 
T Consensus       103 ~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-  174 (571)
T 3cvr_A          103 EYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-  174 (571)
T ss_dssp             CEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-
T ss_pred             CEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-
Confidence            555555555543 333 22                  3455555555555554 3443    24566677777776663 


Q ss_pred             CCccccCCCCCcEEeeccCcccccCCccccCCCCC-------CEEEccCCcccccCCccccCCCCCCEEEccCCccCccc
Q 048688          166 IPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKL-------MGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       166 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  238 (244)
                      +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|++++.+
T Consensus       175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            555 44  67777777777776 4554 433  56       88888888887 67777777888888888888888776


Q ss_pred             CCC
Q 048688          239 LYS  241 (244)
Q Consensus       239 ~~~  241 (244)
                      |..
T Consensus       247 p~~  249 (571)
T 3cvr_A          247 RES  249 (571)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=4.9e-19  Score=133.33  Aligned_cols=152  Identities=19%  Similarity=0.248  Sum_probs=129.3

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +.+++.|+++++.+. .++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            467899999999998 556 6889999999999999775  345788999999999999999977788899999999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEccccc-ccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNM-LHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      +++|.+++..+..+ ..+++|++|++++|. +. .++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++
T Consensus       119 Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKI-NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHH-hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            99999985566656 889999999999998 65 555 68899999999999999985 44 678899999999999998


Q ss_pred             cc
Q 048688          211 QG  212 (244)
Q Consensus       211 ~~  212 (244)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.80  E-value=4.1e-21  Score=170.85  Aligned_cols=229  Identities=20%  Similarity=0.202  Sum_probs=112.0

Q ss_pred             ccCCchhHHHHHHHHHHhcccCCcchhcCCC-CCCCCCcceeeeeeCCCCCceEEEEeCCCcceeccCccCCCCCCCCEE
Q 048688            4 NTRTITTDQDALLALKAHITHDPTNFLAKNW-NTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSL   82 (244)
Q Consensus         4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w-~~~~~~c~~~g~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L   82 (244)
                      +......++.++.++.+......+..-.. | ......+.|.+..+..  ++++.|++.++.+.. .+..+.....|+.+
T Consensus       126 s~s~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~  201 (727)
T 4b8c_D          126 SKSLVDCTKQALMEMADTLTDSKTAKKQQ-PTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQY  201 (727)
T ss_dssp             ------CCCHHHHHHHHHHHHHHTTC------------------------------------------------------
T ss_pred             hhhccccchhhhhhhhhhcccccCcccCC-CcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcc
Confidence            33456677889999998875443333333 5 3334556677766543  567888888777764 33333333333332


Q ss_pred             e-----CCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688           83 D-----LSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL  157 (244)
Q Consensus        83 ~-----l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l  157 (244)
                      .     +..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+ ..+++|++|++
T Consensus       202 ~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L  277 (727)
T 4b8c_D          202 SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDL  277 (727)
T ss_dssp             ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEEC
T ss_pred             cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeC
Confidence            2     2333333 45666777778888888888777 55555667788888888888877 777666 67778888888


Q ss_pred             ccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC-CCEEEccCCccCc
Q 048688          158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE-LEQMSLAENNLQA  236 (244)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~  236 (244)
                      ++|.++ .+|..++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++
T Consensus       278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence            888877 66777777888888888888776 56666777788888888888877666655533211 1234556666665


Q ss_pred             ccCCCC
Q 048688          237 LLLYSF  242 (244)
Q Consensus       237 ~~~~~~  242 (244)
                      .+|.++
T Consensus       356 ~~p~~l  361 (727)
T 4b8c_D          356 PLPHER  361 (727)
T ss_dssp             CCCCC-
T ss_pred             cCcccc
Confidence            555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=4.1e-20  Score=149.28  Aligned_cols=176  Identities=20%  Similarity=0.210  Sum_probs=149.5

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      .++++.|++++|.+++..+..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.     ...++|++|+
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLH  105 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEE
Confidence            5689999999999997777899999999999999999974443  88999999999999998743     2348999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccc-cCCCCCCEEEccCCcc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRL  210 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l  210 (244)
                      +++|.+. .++.   ..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+
T Consensus       106 l~~n~l~-~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          106 AANNNIS-RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             CCSSCCS-EEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CCCCccC-CcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            9999998 5554   346889999999999997777788999999999999999987666666 4789999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          211 QGEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      ++. + ....+++|+.|++++|+++++.+.
T Consensus       182 ~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~  209 (317)
T 3o53_A          182 YDV-K-GQVVFAKLKTLDLSSNKLAFMGPE  209 (317)
T ss_dssp             CEE-E-CCCCCTTCCEEECCSSCCCEECGG
T ss_pred             ccc-c-cccccccCCEEECCCCcCCcchhh
Confidence            854 3 334589999999999999987553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=4.1e-19  Score=153.36  Aligned_cols=135  Identities=25%  Similarity=0.349  Sum_probs=106.3

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688           78 SLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL  157 (244)
Q Consensus        78 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l  157 (244)
                      +|++|++++|.+.+ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.++ .+|. + ..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEEC
Confidence            89999999999984 77665  378999999999998 566   45799999999999998 5877 4 33  8899999


Q ss_pred             ccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.|++++|.|+.
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc
Confidence            9998884 665   56788888888888874 454   45677888888888774 555 44  677777777777774

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=7.2e-21  Score=154.69  Aligned_cols=179  Identities=19%  Similarity=0.254  Sum_probs=89.9

Q ss_pred             CceEEEEeCCCcceec-cCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC-ccCC-CCCccccCCCCCCE
Q 048688           53 HKVTALNISGLNLTGT-IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN-QLTG-VFPSFIFNKSSLQH  129 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~-~l~~-~~~~~~~~l~~L~~  129 (244)
                      ++++.|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++ ..+..+..+++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            4455555555555433 4444555555555555555554444455555555555555555 3432 13333445555555


Q ss_pred             EEccCC-CCCCc-CChhhhCCCC-CCcEEEccccc--cc-ccCCccccCCCCCcEEeeccCc-ccccCCccccCCCCCCE
Q 048688          130 LDFSRN-TLSGE-IPANICSSLP-FLDYLYLSKNM--LH-GGIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNLTKLMG  202 (244)
Q Consensus       130 L~l~~~-~~~~~-l~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~  202 (244)
                      |++++| .+++. ++..+ ..++ +|++|++++|.  ++ ..++..+..+++|+.|++++|. +++..+..+..+++|++
T Consensus       173 L~l~~~~~l~~~~~~~~~-~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAV-AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             EECCCCTTCCHHHHHHHH-HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             EcCCCCCCcChHHHHHHH-HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            555555 44421 22222 4455 55666665552  22 2334444455566666666665 44444445555566666


Q ss_pred             EEccCCc-ccccCCccccCCCCCCEEEccCC
Q 048688          203 LYLGRNR-LQGEIPREFGNLAELEQMSLAEN  232 (244)
Q Consensus       203 L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n  232 (244)
                      |++++|. +.+.....+..+++|+.|++++|
T Consensus       252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            6666553 22221223445555555555555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=2.8e-19  Score=146.97  Aligned_cols=172  Identities=23%  Similarity=0.255  Sum_probs=141.6

Q ss_pred             CCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCC-CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEe
Q 048688           39 PVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLG-NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSF  108 (244)
Q Consensus        39 ~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  108 (244)
                      -.|.+..+.|..         ....++.|++++|.+++..+..|. .+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus        16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            445555566632         235588999999999988888887 9999999999999999667778999999999999


Q ss_pred             cCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccc---cCCCCCcEEeeccCc
Q 048688          109 RENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL---SNCTYLRILSLAYND  185 (244)
Q Consensus       109 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~  185 (244)
                      ++|.+....+..|..+++|++|+|++|.+. .++...+..+++|++|++++|.++...+..+   ..+++|+.|++++|.
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            999999777778899999999999999998 6655556899999999999999984333444   578999999999999


Q ss_pred             ccccCCccccCCCC--CCEEEccCCccc
Q 048688          186 FSGAVPKDIGNLTK--LMGLYLGRNRLQ  211 (244)
Q Consensus       186 ~~~~~~~~~~~~~~--L~~L~l~~n~l~  211 (244)
                      ++...+..+..++.  ++.|++.+|++.
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCcc
Confidence            98655566777776  488999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=9.8e-21  Score=153.90  Aligned_cols=179  Identities=19%  Similarity=0.183  Sum_probs=149.8

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCC-CCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGS-IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ++++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            6788899999988865554 55789999999999998754 777888999999999999998877778888999999999


Q ss_pred             ccCC-CCCCc-CChhhhCCCCCCcEEEcccc-ccccc-CCccccCCC-CCcEEeeccC--ccc-ccCCccccCCCCCCEE
Q 048688          132 FSRN-TLSGE-IPANICSSLPFLDYLYLSKN-MLHGG-IPSTLSNCT-YLRILSLAYN--DFS-GAVPKDIGNLTKLMGL  203 (244)
Q Consensus       132 l~~~-~~~~~-l~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L  203 (244)
                      +++| .+++. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|
T Consensus       149 L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             CCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            9999 67632 43334 77899999999999 88753 567788899 9999999999  454 3456677789999999


Q ss_pred             EccCCc-ccccCCccccCCCCCCEEEccCCc
Q 048688          204 YLGRNR-LQGEIPREFGNLAELEQMSLAENN  233 (244)
Q Consensus       204 ~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~  233 (244)
                      ++++|. +++..+..+..+++|+.|++++|.
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            999999 776777788999999999999995

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.79  E-value=5.1e-18  Score=143.53  Aligned_cols=164  Identities=21%  Similarity=0.284  Sum_probs=122.5

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +++++.|+++++.+++. | .+..+++|++|++++|.+.+ ++  +..+++|++|++++|.+++. +  +..+++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            57899999999999864 5 68999999999999999984 44  88999999999999999865 3  78999999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccC----------------------ccccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN----------------------DFSGA  189 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n----------------------~~~~~  189 (244)
                      +++|.+. .++  + ..+++|++|++++|.+++ ++  ++.+++|+.|++++|                      .+++ 
T Consensus       113 L~~N~l~-~l~--~-~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-  184 (457)
T 3bz5_A          113 CDTNKLT-KLD--V-SQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-  184 (457)
T ss_dssp             CCSSCCS-CCC--C-TTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-
T ss_pred             CCCCcCC-eec--C-CCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-
Confidence            9999998 565  4 788999999999998874 32  445555555555555                      4442 


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       190 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++
T Consensus       185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence            22  44455555555555555532   25566667777777777666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.78  E-value=5.1e-21  Score=158.64  Aligned_cols=187  Identities=18%  Similarity=0.165  Sum_probs=99.1

Q ss_pred             CCceEEEEeCCCccee----ccCccCCCCCCCCEEeCCCCCCCCCCCccc----cCC---------CCCcEEEecCCccC
Q 048688           52 SHKVTALNISGLNLTG----TIPSQLGNLSSLQSLDLSFNRLSGSIPSAI----FTT---------YTLKDVSFRENQLT  114 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l----~~l---------~~L~~L~l~~~~l~  114 (244)
                      .+++++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+    ..+         ++|++|++++|.+.
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            3455555555555543    234444455555555555555532222222    222         55555555555554


Q ss_pred             -CCCC---ccccCCCCCCEEEccCCCCCCc----CChhhhCCCCCCcEEEccccccc----ccCCccccCCCCCcEEeec
Q 048688          115 -GVFP---SFIFNKSSLQHLDFSRNTLSGE----IPANICSSLPFLDYLYLSKNMLH----GGIPSTLSNCTYLRILSLA  182 (244)
Q Consensus       115 -~~~~---~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~  182 (244)
                       ...+   ..+..+++|++|++++|.+...    +.+..+..+++|++|++++|.++    ..+|..+..+++|+.|+++
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~  252 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  252 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence             1222   2334555666666666655411    11212245666666666666663    3455556666667777777


Q ss_pred             cCccccc----CCcccc--CCCCCCEEEccCCcccc----cCCccc-cCCCCCCEEEccCCccCccc
Q 048688          183 YNDFSGA----VPKDIG--NLTKLMGLYLGRNRLQG----EIPREF-GNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       183 ~n~~~~~----~~~~~~--~~~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~  238 (244)
                      +|.+++.    ++..+.  .+++|++|++++|.+++    .+|..+ ..+++|+.|++++|++++..
T Consensus       253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            6666543    233442  26667777777777664    255555 44667777777777766544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=7.4e-18  Score=134.45  Aligned_cols=152  Identities=24%  Similarity=0.340  Sum_probs=131.7

Q ss_pred             CCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCC
Q 048688           73 LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL  152 (244)
Q Consensus        73 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L  152 (244)
                      +..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++. + ..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-L-KDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-G-TTCTTC
T ss_pred             hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-h-ccCCCC
Confidence            346789999999999997 444 48889999999999999986544  889999999999999997 5554 4 889999


Q ss_pred             cEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688          153 DYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN  232 (244)
Q Consensus       153 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  232 (244)
                      ++|++++|.+.. + ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|
T Consensus       115 ~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          115 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            999999999984 3 4688899999999999999854  578899999999999999985444  889999999999999


Q ss_pred             ccCcc
Q 048688          233 NLQAL  237 (244)
Q Consensus       233 ~l~~~  237 (244)
                      .++.+
T Consensus       189 ~i~~l  193 (291)
T 1h6t_A          189 HISDL  193 (291)
T ss_dssp             CCCBC
T ss_pred             cCCCC
Confidence            99885

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.76  E-value=5.7e-20  Score=152.29  Aligned_cols=186  Identities=19%  Similarity=0.241  Sum_probs=126.8

Q ss_pred             CCCceEEEEeCCCcc---eeccCccC-------CCCCCCCEEeCCCCCCCC----CCCccccCCCCCcEEEecCCccCCC
Q 048688           51 HSHKVTALNISGLNL---TGTIPSQL-------GNLSSLQSLDLSFNRLSG----SIPSAIFTTYTLKDVSFRENQLTGV  116 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~~~l~~~  116 (244)
                      ..++++.|+++++.+   .+.+|..+       ..+++|++|++++|.+.+    .++..+..+++|++|++++|.+...
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            456777787777533   23333333       577788888888887775    2555667778888888888877533


Q ss_pred             CCcc----ccCC---------CCCCEEEccCCCCC-CcCCh--hhhCCCCCCcEEEcccccccc-----cCCccccCCCC
Q 048688          117 FPSF----IFNK---------SSLQHLDFSRNTLS-GEIPA--NICSSLPFLDYLYLSKNMLHG-----GIPSTLSNCTY  175 (244)
Q Consensus       117 ~~~~----~~~l---------~~L~~L~l~~~~~~-~~l~~--~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~  175 (244)
                      .+..    +..+         ++|++|++++|.+. ..++.  ..+..+++|++|++++|.+..     ..+..+..+++
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence            2222    2233         78888888888775 22331  122567788888888887762     23336777888


Q ss_pred             CcEEeeccCccc----ccCCccccCCCCCCEEEccCCccccc----CCcccc--CCCCCCEEEccCCccCc
Q 048688          176 LRILSLAYNDFS----GAVPKDIGNLTKLMGLYLGRNRLQGE----IPREFG--NLAELEQMSLAENNLQA  236 (244)
Q Consensus       176 L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~--~l~~L~~L~l~~n~l~~  236 (244)
                      |+.|++++|.++    ..+|..+..+++|++|++++|.+++.    ++..+.  .+++|+.|++++|.++.
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            888888888875    35666777888888888888888754    455553  37888888888888877

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=1.1e-17  Score=125.48  Aligned_cols=131  Identities=21%  Similarity=0.270  Sum_probs=104.1

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCc-cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688           80 QSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPS-FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS  158 (244)
Q Consensus        80 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~  158 (244)
                      ++++++++.+. .+|..+..  ++++|++++|.+.+..+. .+..+++|++|++++|.++ .+++..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence            68889988886 77765543  888999999988865554 4778888999999999888 4433344788888999998


Q ss_pred             cccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccC
Q 048688          159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEI  214 (244)
Q Consensus       159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  214 (244)
                      +|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+....
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            88888777777888888888888888888777888888888888888888887543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=9.2e-20  Score=149.85  Aligned_cols=85  Identities=24%  Similarity=0.200  Sum_probs=40.6

Q ss_pred             ceEEEEeCCCcceeccC----ccCCCCC-CCCEEeCCCCCCCCCCCccccCC-----CCCcEEEecCCccCCCCCcc---
Q 048688           54 KVTALNISGLNLTGTIP----SQLGNLS-SLQSLDLSFNRLSGSIPSAIFTT-----YTLKDVSFRENQLTGVFPSF---  120 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~---  120 (244)
                      +++.|++++|.++...+    +.|..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..   
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            35555555555543333    3444444 55555555555554444444332     55555555555554333332   


Q ss_pred             -ccCC-CCCCEEEccCCCCC
Q 048688          121 -IFNK-SSLQHLDFSRNTLS  138 (244)
Q Consensus       121 -~~~l-~~L~~L~l~~~~~~  138 (244)
                       +..+ ++|++|++++|.+.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGG
T ss_pred             HHHhCCCCccEEECcCCcCC
Confidence             2222 45555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=2.2e-17  Score=144.14  Aligned_cols=82  Identities=26%  Similarity=0.300  Sum_probs=58.5

Q ss_pred             CCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 048688          150 PFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL  229 (244)
Q Consensus       150 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  229 (244)
                      ++|++|++++|.++ .+|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            44555566555555 233   33466777777777776 3444   4577888888888888 77888888999999999


Q ss_pred             cCCccCcccCC
Q 048688          230 AENNLQALLLY  240 (244)
Q Consensus       230 ~~n~l~~~~~~  240 (244)
                      ++|++++.+|.
T Consensus       292 ~~N~l~~~~~~  302 (622)
T 3g06_A          292 EGNPLSERTLQ  302 (622)
T ss_dssp             CSCCCCHHHHH
T ss_pred             cCCCCCCcCHH
Confidence            99998877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=2.1e-17  Score=143.98  Aligned_cols=150  Identities=27%  Similarity=0.327  Sum_probs=130.2

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      .+++|+.|+|++|.+.+..+  +..+++|++|+|++|.+. .++ .+..+++|+.|+|++|.+.+.  ..+..+++|+.|
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  136 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL  136 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE
T ss_pred             cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEE
Confidence            46899999999999986544  889999999999999997 344 788999999999999999853  458899999999


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      +|++|.+. .+ ..+ ..+++|+.|++++|.+.+..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+
T Consensus       137 ~Ls~N~l~-~l-~~l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          137 YLGNNKIT-DI-TVL-SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ECCSSCCC-CC-GGG-GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred             ECCCCccC-Cc-hhh-cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence            99999998 55 444 789999999999999986555  88999999999999999853  4688999999999999998


Q ss_pred             ccc
Q 048688          211 QGE  213 (244)
Q Consensus       211 ~~~  213 (244)
                      .+.
T Consensus       210 ~~~  212 (605)
T 1m9s_A          210 LNK  212 (605)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            854

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=2.3e-17  Score=120.95  Aligned_cols=131  Identities=24%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             CCCCEEeCCCCCCC-CCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEE
Q 048688           77 SSLQSLDLSFNRLS-GSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYL  155 (244)
Q Consensus        77 ~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L  155 (244)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+ ..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCCEE
Confidence            45566666666554 34455555555666666666555533  344555555666665555552233322 345555555


Q ss_pred             EcccccccccCC--ccccCCCCCcEEeeccCcccccCC---ccccCCCCCCEEEccCCccc
Q 048688          156 YLSKNMLHGGIP--STLSNCTYLRILSLAYNDFSGAVP---KDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       156 ~l~~~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~  211 (244)
                      ++++|.+++ ++  ..+..+++|+.|++++|.+++..+   ..+..+++|++|++.+|.+.
T Consensus       101 ~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            555555542 22  334444444444444444442222   13344444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=9.7e-18  Score=122.93  Aligned_cols=138  Identities=20%  Similarity=0.194  Sum_probs=118.5

Q ss_pred             CCCCCcEEEecCCccC-CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCc
Q 048688           99 TTYTLKDVSFRENQLT-GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR  177 (244)
Q Consensus        99 ~l~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  177 (244)
                      ..++|++|++++|.+. +.+|..+..+++|++|++++|.+. .+ ..+ ..+++|++|++++|.+.+.+|..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            3478999999999997 677887889999999999999998 55 444 7899999999999999866888888899999


Q ss_pred             EEeeccCcccccC-CccccCCCCCCEEEccCCcccccCC---ccccCCCCCCEEEccCCccCcccC
Q 048688          178 ILSLAYNDFSGAV-PKDIGNLTKLMGLYLGRNRLQGEIP---REFGNLAELEQMSLAENNLQALLL  239 (244)
Q Consensus       178 ~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~  239 (244)
                      .|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+..+..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            9999999998542 2678899999999999999985444   478899999999999999877543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=1.7e-16  Score=134.13  Aligned_cols=160  Identities=28%  Similarity=0.382  Sum_probs=72.4

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      ++++.|++++|.+++ +|+.   ..+|++|++++|.+. .++..   .++|++|++++|.+++ +| .+..+++|++|++
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence            456666666666664 4432   245555555555544 22211   1355555555555553 33 2455555555555


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      ++|.+. .+|..    ..+|++|++++|.+++ +| .++.+++|+.|++++|.+++ +|..   ..+|++|++++|.++ 
T Consensus       161 ~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          161 DNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-  228 (454)
T ss_dssp             CSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred             CCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence            555554 33321    2345555555555442 33 34444455555555444442 2211   123444444444443 


Q ss_pred             cCCccccCCCCCCEEEccCCccC
Q 048688          213 EIPREFGNLAELEQMSLAENNLQ  235 (244)
Q Consensus       213 ~~~~~l~~l~~L~~L~l~~n~l~  235 (244)
                      .+|. +..+++|+.|++++|+++
T Consensus       229 ~lp~-~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          229 ELPE-LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             cccc-cCCCCCCCEEECCCCcCC
Confidence            3331 334444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.73  E-value=3.7e-19  Score=146.25  Aligned_cols=180  Identities=19%  Similarity=0.174  Sum_probs=125.2

Q ss_pred             EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCC----ccccCCC-CCcEEEecCCccCCCCCccccCC-----CC
Q 048688           57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIP----SAIFTTY-TLKDVSFRENQLTGVFPSFIFNK-----SS  126 (244)
Q Consensus        57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~l-----~~  126 (244)
                      .+.++.+.+++.+|+.+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.+.+..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35788889988888887777889999999999986666    6778888 89999999999987766666654     99


Q ss_pred             CCEEEccCCCCCCcCChhh---hCCC-CCCcEEEcccccccccCCccc----cC-CCCCcEEeeccCcccccCC----cc
Q 048688          127 LQHLDFSRNTLSGEIPANI---CSSL-PFLDYLYLSKNMLHGGIPSTL----SN-CTYLRILSLAYNDFSGAVP----KD  193 (244)
Q Consensus       127 L~~L~l~~~~~~~~l~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~n~~~~~~~----~~  193 (244)
                      |++|++++|.+.+..+..+   +... ++|++|++++|.+++..+..+    .. .++|++|++++|.+++...    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999974443322   1334 789999999988875443332    23 3577777777777764322    22


Q ss_pred             ccCCC-CCCEEEccCCcccccCCcc----ccCC-CCCCEEEccCCccCc
Q 048688          194 IGNLT-KLMGLYLGRNRLQGEIPRE----FGNL-AELEQMSLAENNLQA  236 (244)
Q Consensus       194 ~~~~~-~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~  236 (244)
                      +...+ +|++|++++|.+++..+..    +..+ ++|+.|++++|.++.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            23333 6667777766665443322    2333 366666666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=2.2e-16  Score=133.36  Aligned_cols=161  Identities=24%  Similarity=0.323  Sum_probs=85.8

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      ++++.|++++|.+++ +| .|..+++|++|++++|.+. .+|..   ..+|++|++++|.+++ +| .+..+++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            355666666666553 44 3666666666666666665 33332   2356666666666654 33 3556666666666


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      ++|.+. .+|..    ..+|++|++++|.+. .+|. ++.+++|+.|++++|.+++ +|..   .++|+.|++++|.+++
T Consensus       203 ~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          203 DNNSLK-KLPDL----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CSSCCS-SCCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred             CCCcCC-cCCCC----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence            666665 34321    235666666666665 4453 5666666666666666653 3322   2445555555555442


Q ss_pred             cCCccccCCCCCCEEEccCCccCc
Q 048688          213 EIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       213 ~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                       +|..   .++|+.|++++|++++
T Consensus       272 -l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          272 -LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCSE
T ss_pred             -cCcc---cCcCCEEECcCCccCc
Confidence             2321   2344444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=2.1e-17  Score=144.20  Aligned_cols=160  Identities=26%  Similarity=0.332  Sum_probs=93.8

Q ss_pred             hcCCCCCCCCCcceeeee------eCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCC
Q 048688           30 LAKNWNTSAPVCNWTGVT------CDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTL  103 (244)
Q Consensus        30 ~~~~w~~~~~~c~~~g~~------~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L  103 (244)
                      ... |....++|.|.+..      |.....+++.|+++++.++ .+|..+.  ++|++|++++|.+. .+|.   .+++|
T Consensus        12 w~~-W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L   83 (622)
T 3g06_A           12 WSA-WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL   83 (622)
T ss_dssp             HHH-HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred             HHH-HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence            455 77777788875532      1112234677777777776 5565554  67777777777776 4554   45677


Q ss_pred             cEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeecc
Q 048688          104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY  183 (244)
Q Consensus       104 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  183 (244)
                      ++|++++|.++. +|.   .+++|++|++++|.++ .+|.    .+++|++|++++|.++ .+|..   +++|++|++++
T Consensus        84 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~  150 (622)
T 3g06_A           84 RTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSD  150 (622)
T ss_dssp             CEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred             CEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcC
Confidence            777777777663 343   4566777777777665 4544    2455666666666555 33332   24555555555


Q ss_pred             CcccccCCccc-----------------cCCCCCCEEEccCCccc
Q 048688          184 NDFSGAVPKDI-----------------GNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       184 n~~~~~~~~~~-----------------~~~~~L~~L~l~~n~l~  211 (244)
                      |.+++ +|..+                 ..+++|+.|++++|.++
T Consensus       151 N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          151 NQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             SCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC
Confidence            55542 22211                 12366777777777766

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=7.1e-17  Score=126.90  Aligned_cols=148  Identities=22%  Similarity=0.299  Sum_probs=126.0

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +.+++.|+++++.++ .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ ++.. .. ++|++|+
T Consensus        40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~  112 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF  112 (263)
T ss_dssp             HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred             cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence            568999999999988 455 68899999999999999984 444 8999999999999999985 3432 23 9999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +++|.++ .++ .+ ..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++.
T Consensus       113 L~~N~l~-~~~-~l-~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          113 LDNNELR-DTD-SL-IHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCSSCCS-BSG-GG-TTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             ccCCccC-CCh-hh-cCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            9999998 564 44 789999999999999984 44 688899999999999999865  67888999999999999987


Q ss_pred             cc
Q 048688          212 GE  213 (244)
Q Consensus       212 ~~  213 (244)
                      ..
T Consensus       186 ~~  187 (263)
T 1xeu_A          186 NE  187 (263)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.1e-16  Score=119.95  Aligned_cols=131  Identities=26%  Similarity=0.317  Sum_probs=113.7

Q ss_pred             EEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCc-cccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccC
Q 048688           56 TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPS-AIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSR  134 (244)
Q Consensus        56 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  134 (244)
                      +.++++++.++ .+|..+..  +|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            46788888886 56765543  899999999999855443 488999999999999999988899999999999999999


Q ss_pred             CCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccC
Q 048688          135 NTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV  190 (244)
Q Consensus       135 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  190 (244)
                      |.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus        88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            9998 666665588999999999999999888999999999999999999987543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=119.62  Aligned_cols=127  Identities=29%  Similarity=0.329  Sum_probs=100.0

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccc
Q 048688           80 QSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK  159 (244)
Q Consensus        80 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~  159 (244)
                      ++++++++.+. .+|..+  .+++++|++++|.++ .+|..+..+++|++|++++|.++ .++...|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence            57888888887 666654  357888888888887 56677888888888888888887 66666557888888888888


Q ss_pred             ccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          160 NMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       160 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      |.++...+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            8888666677888888888888888887555556777888888888888775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1.9e-20  Score=162.02  Aligned_cols=109  Identities=25%  Similarity=0.315  Sum_probs=97.3

Q ss_pred             CCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEc
Q 048688          126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYL  205 (244)
Q Consensus       126 ~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  205 (244)
                      .|++|++++|.++ .+|. + ..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~-~lp~-~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCC-CCcC-c-cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            5889999999998 6776 5 88999999999999998 789999999999999999999985 56 7889999999999


Q ss_pred             cCCcccccC-CccccCCCCCCEEEccCCccCcccCC
Q 048688          206 GRNRLQGEI-PREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       206 ~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      ++|.+++.. |..++.+++|+.|++++|++++.+|.
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            999999665 88999999999999999999987664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=2.2e-16  Score=116.63  Aligned_cols=131  Identities=21%  Similarity=0.298  Sum_probs=90.8

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcc
Q 048688           79 LQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS  158 (244)
Q Consensus        79 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~  158 (244)
                      .+.++++++.+. .+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence            467777777776 555433  357788888888777655556677777888888877776 6666555677777777777


Q ss_pred             cccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccccc
Q 048688          159 KNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE  213 (244)
Q Consensus       159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  213 (244)
                      +|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            7777755555567777777777777777654444556677777777777777643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=2.5e-18  Score=152.99  Aligned_cols=123  Identities=28%  Similarity=0.339  Sum_probs=100.0

Q ss_pred             ccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhC
Q 048688           68 TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICS  147 (244)
Q Consensus        68 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~  147 (244)
                      ..++.|..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+ .
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-G  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-G
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh-c
Confidence            45777888899999999999887 77777788999999999999988 77888888999999999999998 888777 7


Q ss_pred             CCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCcccc
Q 048688          148 SLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG  195 (244)
Q Consensus       148 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  195 (244)
                      .+++|++|++++|.+. .+|..|+.+++|+.|+|++|.+++.+|..+.
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            8889999999999887 7788889999999999999998876665553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=5.2e-16  Score=116.33  Aligned_cols=127  Identities=20%  Similarity=0.230  Sum_probs=111.4

Q ss_pred             EEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688           56 TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN  135 (244)
Q Consensus        56 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  135 (244)
                      +.++++++.++ .+|..+.  ++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            35788888887 5665543  68999999999998 78899999999999999999999888888999999999999999


Q ss_pred             CCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccc
Q 048688          136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS  187 (244)
Q Consensus       136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  187 (244)
                      .++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|++.
T Consensus        89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            998 777666689999999999999999555567899999999999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=5.5e-17  Score=116.51  Aligned_cols=127  Identities=22%  Similarity=0.156  Sum_probs=66.8

Q ss_pred             CCCCEEeCCCCCCC-CCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEE
Q 048688           77 SSLQSLDLSFNRLS-GSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYL  155 (244)
Q Consensus        77 ~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L  155 (244)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+ ..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCEE
Confidence            34555555555544 34444445555555555555555433  344555556666666665553233322 445566666


Q ss_pred             Eccccccccc-CCccccCCCCCcEEeeccCcccccCC---ccccCCCCCCEEEcc
Q 048688          156 YLSKNMLHGG-IPSTLSNCTYLRILSLAYNDFSGAVP---KDIGNLTKLMGLYLG  206 (244)
Q Consensus       156 ~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~  206 (244)
                      ++++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666655531 22455566666666666666654333   345566666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=8.6e-17  Score=115.48  Aligned_cols=127  Identities=22%  Similarity=0.243  Sum_probs=61.9

Q ss_pred             CCCcEEEecCCccC-CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEE
Q 048688          101 YTLKDVSFRENQLT-GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRIL  179 (244)
Q Consensus       101 ~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  179 (244)
                      +++++|++++|.+. +.+|..+..+++|++|++++|.+. .+ ..+ ..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34555555555554 344444455555555555555554 22 222 445555555555555543344444445555555


Q ss_pred             eeccCccccc-CCccccCCCCCCEEEccCCcccccCC---ccccCCCCCCEEEcc
Q 048688          180 SLAYNDFSGA-VPKDIGNLTKLMGLYLGRNRLQGEIP---REFGNLAELEQMSLA  230 (244)
Q Consensus       180 ~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~  230 (244)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5555555432 12344455555555555555553322   234455555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=6.8e-16  Score=114.01  Aligned_cols=130  Identities=22%  Similarity=0.253  Sum_probs=105.5

Q ss_pred             EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC
Q 048688           57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT  136 (244)
Q Consensus        57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  136 (244)
                      .++++++.++ .+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            3455566665 345433  3689999999999986666677899999999999999997766778899999999999999


Q ss_pred             CCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccC
Q 048688          137 LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAV  190 (244)
Q Consensus       137 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  190 (244)
                      ++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..
T Consensus        88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            98 677766688999999999999998555556788999999999999987543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.68  E-value=4.1e-19  Score=150.20  Aligned_cols=184  Identities=19%  Similarity=0.241  Sum_probs=102.2

Q ss_pred             ceEEEEeCCCcceec----cCccCCCCCCCCEEeCCCCCCCCCC-----CccccCCCCCcEEEecCCccCCC----CCcc
Q 048688           54 KVTALNISGLNLTGT----IPSQLGNLSSLQSLDLSFNRLSGSI-----PSAIFTTYTLKDVSFRENQLTGV----FPSF  120 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~-----~~~l~~l~~L~~L~l~~~~l~~~----~~~~  120 (244)
                      +++.|++++|.++..    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            444444444444321    2333444455555555555443221     11111345555555555555432    2333


Q ss_pred             ccCCCCCCEEEccCCCCCCcC----ChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCcccccCCc
Q 048688          121 IFNKSSLQHLDFSRNTLSGEI----PANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGAVPK  192 (244)
Q Consensus       121 ~~~l~~L~~L~l~~~~~~~~l----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~  192 (244)
                      +..+++|++|++++|.+.+..    ...+....++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            444566666666666554221    111212234666777766666532    344555667888888888877654333


Q ss_pred             cccC-----CCCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCccCcc
Q 048688          193 DIGN-----LTKLMGLYLGRNRLQG----EIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       193 ~~~~-----~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      .+..     .++|++|++++|.+++    .++..+..+++|++|++++|+++..
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            3322     5678888888888875    5666777788888888888887653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.65  E-value=1.9e-18  Score=146.20  Aligned_cols=15  Identities=20%  Similarity=0.133  Sum_probs=7.5

Q ss_pred             CCceEEEEeCCCcce
Q 048688           52 SHKVTALNISGLNLT   66 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~   66 (244)
                      .++++.|++++|.+.
T Consensus       112 ~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W          112 LPTLQELHLSDNLLG  126 (461)
T ss_dssp             CTTCCEEECCSSBCH
T ss_pred             CCceeEEECCCCcCc
Confidence            345555555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=1.6e-15  Score=123.99  Aligned_cols=178  Identities=19%  Similarity=0.169  Sum_probs=131.3

Q ss_pred             CCCCceEEEEeCCCcceecc-CccCCCCCCCCE-EeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCC
Q 048688           50 VHSHKVTALNISGLNLTGTI-PSQLGNLSSLQS-LDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSL  127 (244)
Q Consensus        50 ~~~~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  127 (244)
                      ..+++++.|++++|.+.+.+ +..|..++++++ +.+.+|.+....+..|..+++|++|++++|.+....+..+....++
T Consensus        51 ~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l  130 (350)
T 4ay9_X           51 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK  130 (350)
T ss_dssp             TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC
T ss_pred             cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchh
Confidence            35789999999999986544 467889998876 5556788886667889999999999999999986666566667778


Q ss_pred             CEEEccCC-CCCCcCChhhhCCCC-CCcEEEcccccccccCCccccCCCCCcEEeecc-CcccccCCccccCCCCCCEEE
Q 048688          128 QHLDFSRN-TLSGEIPANICSSLP-FLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY-NDFSGAVPKDIGNLTKLMGLY  204 (244)
Q Consensus       128 ~~L~l~~~-~~~~~l~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~  204 (244)
                      ..+++.++ .+. .++...+..+. .+++|++++|.++ .++.......+|+.+.+.+ |.++...++.|..+++|+.|+
T Consensus       131 ~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          131 VLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  208 (350)
T ss_dssp             EEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred             hhhhhccccccc-cccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence            88888664 554 77766555543 5788999999888 4555555566788888875 556644445678888999999


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCC
Q 048688          205 LGRNRLQGEIPREFGNLAELEQMSLAEN  232 (244)
Q Consensus       205 l~~n~l~~~~~~~l~~l~~L~~L~l~~n  232 (244)
                      +++|+++ .+|..  .+.+|+.|.+.++
T Consensus       209 Ls~N~l~-~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          209 ISRTRIH-SLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             CTTSCCC-CCCSS--SCTTCCEEECTTC
T ss_pred             cCCCCcC-ccChh--hhccchHhhhccC
Confidence            9999988 44432  2455556655444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=3e-16  Score=115.90  Aligned_cols=132  Identities=20%  Similarity=0.214  Sum_probs=76.7

Q ss_pred             CCCCCCCCEEeCCCCCCCCCCCccccCC-CCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCC
Q 048688           73 LGNLSSLQSLDLSFNRLSGSIPSAIFTT-YTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF  151 (244)
Q Consensus        73 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~  151 (244)
                      +..+.+|++|++++|.+. .++. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.++ .++..++..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence            345556666666666665 3333 3333 3666666666666543  34556666666666666665 555544455666


Q ss_pred             CcEEEcccccccccCCc--cccCCCCCcEEeeccCcccccCCcc----ccCCCCCCEEEccCCccc
Q 048688          152 LDYLYLSKNMLHGGIPS--TLSNCTYLRILSLAYNDFSGAVPKD----IGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       152 L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~l~  211 (244)
                      |++|++++|.+. .+|.  .+..+++|+.|++++|.++ ..|..    +..+++|+.|++++|...
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            666666666664 3443  5556666666666666665 33432    555666666666666544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=5.2e-16  Score=114.57  Aligned_cols=136  Identities=14%  Similarity=0.160  Sum_probs=112.3

Q ss_pred             ccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCC
Q 048688           95 SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT  174 (244)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  174 (244)
                      ..+..+.+|++|++++|.++. ++......++|++|++++|.+. .+ ..+ ..+++|++|++++|.++...+..+..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~-~~-~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EE-CCC-CCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCC-cc-ccc-ccCCCCCEEECCCCcccccCcchhhcCC
Confidence            346678899999999999984 4553333459999999999998 55 444 7899999999999999855445568999


Q ss_pred             CCcEEeeccCcccccCCc--cccCCCCCCEEEccCCcccccCCcc----ccCCCCCCEEEccCCccCc
Q 048688          175 YLRILSLAYNDFSGAVPK--DIGNLTKLMGLYLGRNRLQGEIPRE----FGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       175 ~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~  236 (244)
                      +|+.|++++|.+. .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.|++++|.+..
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999999996 4555  7888999999999999998 56664    8899999999999997644

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.1e-15  Score=123.85  Aligned_cols=189  Identities=17%  Similarity=0.134  Sum_probs=121.8

Q ss_pred             CCceEEEEeCCCcce--------------------eccCccCCC--------CCCCCEEeCCCCCCCCCCCccccCCCCC
Q 048688           52 SHKVTALNISGLNLT--------------------GTIPSQLGN--------LSSLQSLDLSFNRLSGSIPSAIFTTYTL  103 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~--------------------~~~~~~~~~--------l~~L~~L~l~~n~i~~~~~~~l~~l~~L  103 (244)
                      +++++.|+|++|.+.                    .+....|.+        +.+|+.++++. .+......+|..+++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            456777777777665                    233455666        78888888877 6664555677778888


Q ss_pred             cEEEecCCccCCCCCccccCCCCCCEEEccCCCC-------C-------------------CcCChhhh-----------
Q 048688          104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTL-------S-------------------GEIPANIC-----------  146 (244)
Q Consensus       104 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~-------~-------------------~~l~~~~~-----------  146 (244)
                      +.+++..|.+....+..|..+.++..+.......       .                   +.++..++           
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            8888887776655555566555555555433110       0                   00000000           


Q ss_pred             ----------------CCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCC-EEEccCCc
Q 048688          147 ----------------SSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLM-GLYLGRNR  209 (244)
Q Consensus       147 ----------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~  209 (244)
                                      ..+++|+.+++.+|.++...+..|..+.+|+.+.+.+| ++...+.+|.++.+|+ .+++.+ .
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence                            12567788888877777444556777888888888777 5545666777777787 887776 5


Q ss_pred             ccccCCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688          210 LQGEIPREFGNLAELEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       210 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  243 (244)
                      ++...+.+|..|++|+.|++++|.++.+.+..|.
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG  318 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred             ceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence            6545567777888888888888887777766664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=2e-18  Score=130.11  Aligned_cols=133  Identities=19%  Similarity=0.264  Sum_probs=84.5

Q ss_pred             cccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCC
Q 048688           96 AIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTY  175 (244)
Q Consensus        96 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  175 (244)
                      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            66666677777777766664 44 5566677777777777666 565543 445667777777777663 33 4566667


Q ss_pred             CcEEeeccCcccccCC-ccccCCCCCCEEEccCCcccccCCc----------cccCCCCCCEEEccCCccCc
Q 048688          176 LRILSLAYNDFSGAVP-KDIGNLTKLMGLYLGRNRLQGEIPR----------EFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       176 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~l~~l~~L~~L~l~~n~l~~  236 (244)
                      |+.|++++|.++...+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.|+  +++++.
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            7777777777653221 3566677777777777777654443          256677777776  565544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=1.3e-14  Score=106.37  Aligned_cols=104  Identities=23%  Similarity=0.240  Sum_probs=50.9

Q ss_pred             cEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeecc
Q 048688          104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY  183 (244)
Q Consensus       104 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  183 (244)
                      +.++++++.++ .+|..+  .+++++|++++|.++ .+++..+..+++|++|++++|.++...+..|..+++|+.|++++
T Consensus        12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45555555554 233322  245555555555554 33333334555555555555555533333445555555555555


Q ss_pred             CcccccCCccccCCCCCCEEEccCCccc
Q 048688          184 NDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       184 n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      |.+++..+..+..+++|+.|++++|++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555433334445555555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=3.5e-14  Score=104.52  Aligned_cols=104  Identities=23%  Similarity=0.275  Sum_probs=57.1

Q ss_pred             cEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeecc
Q 048688          104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY  183 (244)
Q Consensus       104 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  183 (244)
                      +.++++++.+. .+|..+  .++|++|++++|.+. .+++..+..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45566666654 344433  255666666666665 34333335566666666666666533333445566666666666


Q ss_pred             CcccccCCccccCCCCCCEEEccCCccc
Q 048688          184 NDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       184 n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      |.+++..+..+..+++|++|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6665433334555566666666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=1.4e-17  Score=125.46  Aligned_cols=150  Identities=24%  Similarity=0.259  Sum_probs=119.0

Q ss_pred             ceEEEEeCCCcceeccCc------cCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCC
Q 048688           54 KVTALNISGLNLTGTIPS------QLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSL  127 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  127 (244)
                      .++.++++.+.+.+..|.      .+..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            344445555555544444      8889999999999999998 466 8889999999999999998 567777778999


Q ss_pred             CEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeeccCcccccCCc----------cccC
Q 048688          128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP-STLSNCTYLRILSLAYNDFSGAVPK----------DIGN  196 (244)
Q Consensus       128 ~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~----------~~~~  196 (244)
                      ++|++++|.+. .++ .+ ..+++|++|++++|.++...+ ..+..+++|+.|++++|.+.+..|.          .+..
T Consensus        96 ~~L~L~~N~l~-~l~-~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           96 EELWISYNQIA-SLS-GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             SEEEEEEEECC-CHH-HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CEEECcCCcCC-cCC-cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            99999999998 565 44 678899999999999974222 4688899999999999998765443          2678


Q ss_pred             CCCCCEEEccCCccc
Q 048688          197 LTKLMGLYLGRNRLQ  211 (244)
Q Consensus       197 ~~~L~~L~l~~n~l~  211 (244)
                      +++|+.|+  ++.++
T Consensus       173 l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          173 LPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSCSEEC--CGGGT
T ss_pred             CCCcEEEC--CcccC
Confidence            89999887  66665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=6.8e-14  Score=113.33  Aligned_cols=174  Identities=14%  Similarity=0.105  Sum_probs=139.8

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCcc----CCCCCccc------
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQL----TGVFPSFI------  121 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l----~~~~~~~~------  121 (244)
                      +.+++.|++.. .++.+...+|.++.+|+.++++.|.+....+.+|..+.++..+.+.....    .......|      
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            57899999998 88877788999999999999999988756667777777776665544111    00000000      


Q ss_pred             --------------------------------------------cCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688          122 --------------------------------------------FNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL  157 (244)
Q Consensus       122 --------------------------------------------~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l  157 (244)
                                                                  ..+++|+.+++.+|.++ .++...|..+.+|+.+++
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEEC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEEC
Confidence                                                        02789999999999998 999999999999999999


Q ss_pred             ccccccccCCccccCCCCCc-EEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 048688          158 SKNMLHGGIPSTLSNCTYLR-ILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL  229 (244)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  229 (244)
                      ..| ++...+..|..+.+|+ .+.+.. .++...+.+|.++.+|+.+++.+|.++...+..|..+++|+.|+.
T Consensus       258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            988 7656667899999999 999988 666577789999999999999999998677778999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=6.1e-14  Score=121.41  Aligned_cols=171  Identities=20%  Similarity=0.181  Sum_probs=135.5

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCC-------------CCCCCCccccC-------------------
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNR-------------LSGSIPSAIFT-------------------   99 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~l~~-------------------   99 (244)
                      .++++.|++++|.++ .+|+.++.+++|++|++++|.             ..+..|..+..                   
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence            345556777777776 678888888888888876653             22222222211                   


Q ss_pred             -------------CCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccC
Q 048688          100 -------------TYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI  166 (244)
Q Consensus       100 -------------l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~  166 (244)
                                   ...|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+++ +
T Consensus       427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~-l  501 (567)
T 1dce_A          427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN-V  501 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC-C
T ss_pred             hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC-C
Confidence                         1258899999999985 566 889999999999999998 999877 899999999999999984 7


Q ss_pred             CccccCCCCCcEEeeccCcccccC-CccccCCCCCCEEEccCCcccccCCcc---ccCCCCCCEEEc
Q 048688          167 PSTLSNCTYLRILSLAYNDFSGAV-PKDIGNLTKLMGLYLGRNRLQGEIPRE---FGNLAELEQMSL  229 (244)
Q Consensus       167 ~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l  229 (244)
                      | .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+..   +..+++|+.|++
T Consensus       502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            7 8999999999999999999776 899999999999999999998654422   334889999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=1.2e-13  Score=101.25  Aligned_cols=103  Identities=23%  Similarity=0.310  Sum_probs=58.3

Q ss_pred             EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC
Q 048688           57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT  136 (244)
Q Consensus        57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  136 (244)
                      .++++++.++ .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            4566666665 3444332  556666666666664445555666666666666666654444445556666666666666


Q ss_pred             CCCcCChhhhCCCCCCcEEEccccccc
Q 048688          137 LSGEIPANICSSLPFLDYLYLSKNMLH  163 (244)
Q Consensus       137 ~~~~l~~~~~~~~~~L~~L~l~~~~~~  163 (244)
                      ++ .++...+..+++|++|++++|.+.
T Consensus        90 l~-~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 LK-SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            55 444444455555666666555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=1.4e-13  Score=101.21  Aligned_cols=104  Identities=25%  Similarity=0.361  Sum_probs=63.1

Q ss_pred             EEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688           56 TALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN  135 (244)
Q Consensus        56 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  135 (244)
                      +.++++++.+. .+|..+.  .+|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            35666666665 4554443  56666777766666555556666666666666666666544444556666666666666


Q ss_pred             CCCCcCChhhhCCCCCCcEEEccccccc
Q 048688          136 TLSGEIPANICSSLPFLDYLYLSKNMLH  163 (244)
Q Consensus       136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~  163 (244)
                      .+. .++...+..+++|++|++++|.+.
T Consensus        92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence            665 555554455666666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=5.2e-12  Score=104.89  Aligned_cols=180  Identities=15%  Similarity=0.142  Sum_probs=104.2

Q ss_pred             eEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCC----------------------CCCccccCCCCCcEEEecCCc
Q 048688           55 VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG----------------------SIPSAIFTTYTLKDVSFRENQ  112 (244)
Q Consensus        55 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~----------------------~~~~~l~~l~~L~~L~l~~~~  112 (244)
                      ++.+.+.. .++.+...+|.++.+|+.++++.|.+..                      ....+|..+++|+.+.+..+ 
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-  236 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-  236 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-
Confidence            45555543 3443445556666666666666555542                      22333444444444444432 


Q ss_pred             cCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccccc-----ccCCccccCCCCCcEEeeccCccc
Q 048688          113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLH-----GGIPSTLSNCTYLRILSLAYNDFS  187 (244)
Q Consensus       113 l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~n~~~  187 (244)
                      ++.+....|.. .+|+.+.+. +.+. .++...|..+++|+.+.+.++.+.     ...+..|..|++|+.+.+..+ ++
T Consensus       237 l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~  312 (401)
T 4fdw_A          237 VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR  312 (401)
T ss_dssp             CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE
Confidence            22222233333 445555552 2343 566666677777777777666543     234456777777777777743 55


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          188 GAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       188 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ......|.++.+|+.+.+..+ ++.....+|..+ +|+.+++.+|.+..+.+..|
T Consensus       313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F  365 (401)
T 4fdw_A          313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW  365 (401)
T ss_dssp             EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred             EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence            455667777788888888544 554556678888 88888888887777655544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.40  E-value=8.7e-15  Score=120.43  Aligned_cols=160  Identities=19%  Similarity=0.226  Sum_probs=96.1

Q ss_pred             CceEEEEeCCCcceeccCcc----CC-CCCCCCEEeCCCCCCCCCCCcccc-CCCCCcEEEecCCccCCCCCccc-----
Q 048688           53 HKVTALNISGLNLTGTIPSQ----LG-NLSSLQSLDLSFNRLSGSIPSAIF-TTYTLKDVSFRENQLTGVFPSFI-----  121 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~-----  121 (244)
                      +.++.|++++|.++......    +. ...+|++|++++|.+++.....+. .+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45777888877776432222    22 225777888888777533232222 34567778888777754322222     


Q ss_pred             cCCCCCCEEEccCCCCCCc----CChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCccccc----
Q 048688          122 FNKSSLQHLDFSRNTLSGE----IPANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGA----  189 (244)
Q Consensus       122 ~~l~~L~~L~l~~~~~~~~----l~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----  189 (244)
                      ...++|++|++++|.++..    ++..+ ...++|++|++++|.+.+.    ++..+...++|+.|++++|.++..    
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence            2356778888887776521    22222 4566777888877776532    344555666777888877777542    


Q ss_pred             CCccccCCCCCCEEEccCCccccc
Q 048688          190 VPKDIGNLTKLMGLYLGRNRLQGE  213 (244)
Q Consensus       190 ~~~~~~~~~~L~~L~l~~n~l~~~  213 (244)
                      +...+..+++|++|++++|.+++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence            223344557777788877777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.37  E-value=3.1e-15  Score=123.08  Aligned_cols=162  Identities=21%  Similarity=0.167  Sum_probs=119.0

Q ss_pred             CCCCCEEeCCCCCCCCCCCccccC-----CCCCcEEEecCCccCCCCCccc-cCCCCCCEEEccCCCCCCcCChhh----
Q 048688           76 LSSLQSLDLSFNRLSGSIPSAIFT-----TYTLKDVSFRENQLTGVFPSFI-FNKSSLQHLDFSRNTLSGEIPANI----  145 (244)
Q Consensus        76 l~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~l~~~~----  145 (244)
                      ++.|++|++++|.++......+..     ..+|++|+|++|.+.......+ ..+++|++|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467999999999987443333332     3689999999998864322222 245689999999999873222222    


Q ss_pred             hCCCCCCcEEEcccccccc----cCCccccCCCCCcEEeeccCccccc----CCccccCCCCCCEEEccCCccccc----
Q 048688          146 CSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLAYNDFSGA----VPKDIGNLTKLMGLYLGRNRLQGE----  213 (244)
Q Consensus       146 ~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----  213 (244)
                      ....++|++|++++|.++.    .++..+..+++|++|++++|.+.+.    +...+...++|++|++++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence            1346789999999999864    2445557788999999999998643    245566778999999999999853    


Q ss_pred             CCccccCCCCCCEEEccCCccCcc
Q 048688          214 IPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       214 ~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ++..+..+++|++|++++|+|+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence            344556678999999999998754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=3.2e-12  Score=104.11  Aligned_cols=103  Identities=20%  Similarity=0.210  Sum_probs=80.0

Q ss_pred             EEEecCC-ccCCCCCccccCCCCCCEEEccC-CCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeec
Q 048688          105 DVSFREN-QLTGVFPSFIFNKSSLQHLDFSR-NTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLA  182 (244)
Q Consensus       105 ~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  182 (244)
                      .++++++ .++ .+|. +..+.+|++|+|++ |.+. .++...|..+++|++|++++|.+++..|..|..+++|+.|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4577776 677 4677 88888888888886 8887 6776666888888888888888887777788888888888888


Q ss_pred             cCcccccCCccccCCCCCCEEEccCCccc
Q 048688          183 YNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       183 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +|.+++..+..+..+. |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            8888755555555444 888888888876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.36  E-value=2.7e-11  Score=100.53  Aligned_cols=181  Identities=13%  Similarity=0.149  Sum_probs=117.0

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS  133 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  133 (244)
                      +++.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|..+++|+.+++..+.++......|. ..+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            5777887665 665667788774 799999986 56546667899999999999998877744444443 5677777776


Q ss_pred             CCCCCCcCChhhhCCCCCCcEEEcccc---------------------cccccCCccccCCCCCcEEeeccCccc-----
Q 048688          134 RNTLSGEIPANICSSLPFLDYLYLSKN---------------------MLHGGIPSTLSNCTYLRILSLAYNDFS-----  187 (244)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~---------------------~~~~~~~~~l~~~~~L~~L~l~~n~~~-----  187 (244)
                      .+ +. .++...|..+++|+.+.+..+                     .++..-...|..|++|+.+.+.++.+.     
T Consensus       212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~  289 (401)
T 4fdw_A          212 VT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA  289 (401)
T ss_dssp             TT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred             Cc-hh-eehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence            43 44 566666666666666666443                     122223445666677777777665543     


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          188 GAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       188 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ...+..|.++.+|+.+.+.+ .++.....+|..|.+|+.+.+..+ ++.+-+..|
T Consensus       290 ~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             EECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence            24445666677777777763 355444566777777777777444 555444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.36  E-value=9.4e-14  Score=120.87  Aligned_cols=101  Identities=12%  Similarity=0.114  Sum_probs=46.6

Q ss_pred             eEEEEeCCCc-cee-ccCccCCCCCCCCEEeCCCCCCCCC----CCccccCCCCCcEEEecCCccCC----CCCccccCC
Q 048688           55 VTALNISGLN-LTG-TIPSQLGNLSSLQSLDLSFNRLSGS----IPSAIFTTYTLKDVSFRENQLTG----VFPSFIFNK  124 (244)
Q Consensus        55 l~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~~~l~~----~~~~~~~~l  124 (244)
                      ++.|+++++. +.. .++..+..+++|++|++++|.+.+.    ++..+..+++|++|+++++.+.+    .++..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            6666666554 211 1122223456666666666655433    22233445556666665555542    122223345


Q ss_pred             CCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688          125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL  157 (244)
Q Consensus       125 ~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l  157 (244)
                      ++|++|++.+|.+. .++..+ ..+++|++|++
T Consensus       220 ~~L~~L~L~~~~~~-~l~~~~-~~~~~L~~L~l  250 (592)
T 3ogk_B          220 RSLVSVKVGDFEIL-ELVGFF-KAAANLEEFCG  250 (592)
T ss_dssp             TTCCEEECSSCBGG-GGHHHH-HHCTTCCEEEE
T ss_pred             CCCcEEeccCccHH-HHHHHH-hhhhHHHhhcc
Confidence            55666666555544 233222 33444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.34  E-value=7.1e-14  Score=121.63  Aligned_cols=82  Identities=11%  Similarity=0.143  Sum_probs=40.8

Q ss_pred             CCCCCcEEEecCCccCCC----CCccccCCCCCCEEEccCCCCCC----cCChhhhCCCCCCcEEEcccccccccCCccc
Q 048688           99 TTYTLKDVSFRENQLTGV----FPSFIFNKSSLQHLDFSRNTLSG----EIPANICSSLPFLDYLYLSKNMLHGGIPSTL  170 (244)
Q Consensus        99 ~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  170 (244)
                      .+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+    .++. ++..+++|++|++++|.+. .++..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~-~l~~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEIL-ELVGFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGG-GGHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHH-HHHHHH
Confidence            455666666666655433    12223345666666666665541    1111 2234566666666666554 234444


Q ss_pred             cCCCCCcEEeec
Q 048688          171 SNCTYLRILSLA  182 (244)
Q Consensus       171 ~~~~~L~~L~l~  182 (244)
                      ..+++|+.|+++
T Consensus       240 ~~~~~L~~L~l~  251 (592)
T 3ogk_B          240 KAAANLEEFCGG  251 (592)
T ss_dssp             HHCTTCCEEEEC
T ss_pred             hhhhHHHhhccc
Confidence            444455555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=9.5e-12  Score=101.32  Aligned_cols=102  Identities=23%  Similarity=0.221  Sum_probs=85.8

Q ss_pred             EEeCCC-cceeccCccCCCCCCCCEEeCCC-CCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688           58 LNISGL-NLTGTIPSQLGNLSSLQSLDLSF-NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN  135 (244)
Q Consensus        58 L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  135 (244)
                      ++.+++ .++ .+|. +..+.+|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            345555 666 4777 88999999999996 9998666678999999999999999999888888899999999999999


Q ss_pred             CCCCcCChhhhCCCCCCcEEEccccccc
Q 048688          136 TLSGEIPANICSSLPFLDYLYLSKNMLH  163 (244)
Q Consensus       136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~  163 (244)
                      .++ .+|...+..+. |++|++.+|.+.
T Consensus        91 ~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            998 78877766555 999999998875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.28  E-value=2.1e-13  Score=118.61  Aligned_cols=109  Identities=18%  Similarity=0.211  Sum_probs=57.2

Q ss_pred             CCceEEEEeCCCcceeccCccCC-CCCCCCEEeCCCC-CCCCC-CCccccCCCCCcEEEecCCccCCCCCccc----cCC
Q 048688           52 SHKVTALNISGLNLTGTIPSQLG-NLSSLQSLDLSFN-RLSGS-IPSAIFTTYTLKDVSFRENQLTGVFPSFI----FNK  124 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~----~~l  124 (244)
                      .++++.|+++++.+++..+..+. .+++|++|++++| .+.+. ++..+..+++|++|++++|.+++..+..+    ..+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            34666777776666544444443 4567777777666 33311 22333356677777777766554332222    245


Q ss_pred             CCCCEEEccCCC--CCCcCChhhhCCCCCCcEEEcccc
Q 048688          125 SSLQHLDFSRNT--LSGEIPANICSSLPFLDYLYLSKN  160 (244)
Q Consensus       125 ~~L~~L~l~~~~--~~~~l~~~~~~~~~~L~~L~l~~~  160 (244)
                      ++|++|+++++.  +.......+...+++|++|++++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            567777776665  111111112233566666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.25  E-value=6.8e-14  Score=121.76  Aligned_cols=134  Identities=16%  Similarity=0.160  Sum_probs=75.1

Q ss_pred             CCCCcEEEecCCccCCCCCcccc-CCCCCCEEEcc--C----CCCCCcCCh-----hhhCCCCCCcEEEcccccccccCC
Q 048688          100 TYTLKDVSFRENQLTGVFPSFIF-NKSSLQHLDFS--R----NTLSGEIPA-----NICSSLPFLDYLYLSKNMLHGGIP  167 (244)
Q Consensus       100 l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~--~----~~~~~~l~~-----~~~~~~~~L~~L~l~~~~~~~~~~  167 (244)
                      +++|++|.+.++.+++.....+. .+++|++|++.  +    +.++ ..|.     .++..+++|++|++++ .+++...
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            44444444444444332222222 35666666666  2    2333 2111     1124456677777755 3433322


Q ss_pred             ccccC-CCCCcEEeeccCcccccCCccc-cCCCCCCEEEccCCcccccCCc-cccCCCCCCEEEccCCccC
Q 048688          168 STLSN-CTYLRILSLAYNDFSGAVPKDI-GNLTKLMGLYLGRNRLQGEIPR-EFGNLAELEQMSLAENNLQ  235 (244)
Q Consensus       168 ~~l~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~  235 (244)
                      ..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... .+..+++|+.|++++|+++
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            33333 6778888888887764433333 5678888888888888643332 3445788888888888773

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.08  E-value=5.5e-11  Score=97.24  Aligned_cols=182  Identities=14%  Similarity=0.153  Sum_probs=105.0

Q ss_pred             CCceEEEEeCCCccee-c-------cCccCCCCCCCCEEeCCCCCCC---------CCCCccccCCCCCcEEEecCCccC
Q 048688           52 SHKVTALNISGLNLTG-T-------IPSQLGNLSSLQSLDLSFNRLS---------GSIPSAIFTTYTLKDVSFRENQLT  114 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~-~-------~~~~~~~l~~L~~L~l~~n~i~---------~~~~~~l~~l~~L~~L~l~~~~l~  114 (244)
                      ..+|+.|.+....+.+ .       +..+...+++|+.|.+......         +.+...+..+|+|+.|.++++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3456677666544331 1       1223445678888877654321         113344456788888888776311


Q ss_pred             CCCCccccCCCCCCEEEccCCCCCCcCChhhh-CCCCCCcEEEcccc--cccc-----cCCccc--cCCCCCcEEeeccC
Q 048688          115 GVFPSFIFNKSSLQHLDFSRNTLSGEIPANIC-SSLPFLDYLYLSKN--MLHG-----GIPSTL--SNCTYLRILSLAYN  184 (244)
Q Consensus       115 ~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~-~~~~~L~~L~l~~~--~~~~-----~~~~~l--~~~~~L~~L~l~~n  184 (244)
                       .++. + .+++|++|++..+.+.......+. ..+++|++|+++.+  ...+     .+...+  ..+++|+.|++.+|
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence             2222 3 377888888887766533222331 25788888887531  1110     111122  24678888888888


Q ss_pred             cccccCCccc---cCCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCccCc
Q 048688          185 DFSGAVPKDI---GNLTKLMGLYLGRNRLQGE----IPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       185 ~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      .+.+..+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++.
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            7653222222   2467788888888887753    33334456888888888887653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=1.2e-10  Score=95.32  Aligned_cols=177  Identities=12%  Similarity=0.149  Sum_probs=116.3

Q ss_pred             CCceEEEEeCCCcce---------eccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCcccc
Q 048688           52 SHKVTALNISGLNLT---------GTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIF  122 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~  122 (244)
                      +++++.|.+......         +.+...+..+++|+.|.++++.-. .++. + .+++|++|++..+.+.......+.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            467888888654321         123345567899999999887322 2332 3 388999999998887643323333


Q ss_pred             --CCCCCCEEEccC--CCCCC-----cCChhhh-CCCCCCcEEEcccccccccCCccc---cCCCCCcEEeeccCccccc
Q 048688          123 --NKSSLQHLDFSR--NTLSG-----EIPANIC-SSLPFLDYLYLSKNMLHGGIPSTL---SNCTYLRILSLAYNDFSGA  189 (244)
Q Consensus       123 --~l~~L~~L~l~~--~~~~~-----~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~  189 (244)
                        .+|+|++|+|+.  +...+     .+...+. ..+++|++|++.+|.+.+..+..+   ..+++|++|+++.|.+.+.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence              689999999853  11111     1112221 247899999999998864332222   3578999999999988753


Q ss_pred             ----CCccccCCCCCCEEEccCCcccccCCccccC-CCCCCEEEccCCc
Q 048688          190 ----VPKDIGNLTKLMGLYLGRNRLQGEIPREFGN-LAELEQMSLAENN  233 (244)
Q Consensus       190 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~  233 (244)
                          ++..+..+++|+.|++++|.+++.....+.. +  ...+++++++
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence                2333456789999999999988654444443 2  3567888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.67  E-value=4.1e-09  Score=78.05  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             CCCCcEEeeccCccccc----CCccccCCCCCCEEEc--cCCccccc----CCccccCCCCCCEEEccCCcc
Q 048688          173 CTYLRILSLAYNDFSGA----VPKDIGNLTKLMGLYL--GRNRLQGE----IPREFGNLAELEQMSLAENNL  234 (244)
Q Consensus       173 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l  234 (244)
                      .++|++|++++|.+...    +...+...+.|++|++  ++|.+.+.    +...+...++|+.|++++|.+
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            34455555555554321    1233444455556665  55555432    223334445566666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=4.3e-09  Score=77.94  Aligned_cols=62  Identities=16%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             CCCcEEEccccccccc----CCccccCCCCCcEEee--ccCccccc----CCccccCCCCCCEEEccCCccc
Q 048688          150 PFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSL--AYNDFSGA----VPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       150 ~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      ++|++|++++|.+...    +...+...++|++|++  ++|.+...    +...+...+.|++|++++|.+.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4455555555544321    2333444455666666  55555422    1223344556666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=5.6e-08  Score=70.74  Aligned_cols=84  Identities=13%  Similarity=0.147  Sum_probs=42.5

Q ss_pred             CCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccccc-ccccCCccccCC----CCCcEEeeccCc-ccccCCccccCCC
Q 048688          125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNM-LHGGIPSTLSNC----TYLRILSLAYND-FSGAVPKDIGNLT  198 (244)
Q Consensus       125 ~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~----~~L~~L~l~~n~-~~~~~~~~~~~~~  198 (244)
                      ..|++|+++++.++..-...+ ..+++|++|++++|. +++.--..+..+    ++|+.|++++|. +++..-..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            356666666666553333333 456666666666653 443222223332    246666666653 5433333444556


Q ss_pred             CCCEEEccCCc
Q 048688          199 KLMGLYLGRNR  209 (244)
Q Consensus       199 ~L~~L~l~~n~  209 (244)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            66666666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.43  E-value=3.9e-06  Score=69.29  Aligned_cols=173  Identities=15%  Similarity=0.165  Sum_probs=102.6

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCC---------------------CCCCccccCCCCCcEEEec
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLS---------------------GSIPSAIFTTYTLKDVSFR  109 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~---------------------~~~~~~l~~l~~L~~L~l~  109 (244)
                      ...+++.+.+..+ ++.+...+|..+..|+.+.+..+...                     ......+..+..++.+.+.
T Consensus       183 ~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~  261 (394)
T 4fs7_A          183 GCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQ  261 (394)
T ss_dssp             TCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEEC
T ss_pred             CCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcC
Confidence            3456666666554 44345566777777777666543221                     0111223334444444444


Q ss_pred             CCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCccccc
Q 048688          110 ENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGA  189 (244)
Q Consensus       110 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  189 (244)
                      .+... .....+..+..++.+.....    .++...|....+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++..
T Consensus       262 ~~~~~-i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I  334 (394)
T 4fs7_A          262 NNKLR-IGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI  334 (394)
T ss_dssp             CTTCE-ECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             CCcce-eeccccccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence            33222 23333444455555544332    244455566777888877654 44344567788888888888654 5445


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688          190 VPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN  232 (244)
Q Consensus       190 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  232 (244)
                      ...+|.++.+|+.+.+..+ ++.....+|..|.+|+.+++..+
T Consensus       335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            5677888888888888765 55455677888888988888655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.41  E-value=5.4e-06  Score=68.47  Aligned_cols=185  Identities=14%  Similarity=0.134  Sum_probs=117.0

Q ss_pred             eCCCCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccC-------------
Q 048688           48 CDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLT-------------  114 (244)
Q Consensus        48 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~-------------  114 (244)
                      +.....+++.+.+..+. ..+....|..+.+|+.+.+..+ +......++..+..|+.+.+..+...             
T Consensus       157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~  234 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN  234 (394)
T ss_dssp             TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred             hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence            33456788899987654 3366788999999999999876 33244556667777776665543221             


Q ss_pred             --------CCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688          115 --------GVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF  186 (244)
Q Consensus       115 --------~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  186 (244)
                              ......+..+..++.+.+..+..  .+....|.....++.+......+   ....+..+.+|+.+.+..+ +
T Consensus       235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i  308 (394)
T 4fs7_A          235 IIIPDSFTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-V  308 (394)
T ss_dssp             EEECTTCCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-C
T ss_pred             EEECCCceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---ccccccccccccccccccc-c
Confidence                    11122233444555555544322  33344444555555554443322   2245677888888888765 4


Q ss_pred             cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       187 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      +.....+|.++.+|+.+++..+ ++.....+|..|.+|+.+++..+ ++.+-...|
T Consensus       309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF  362 (394)
T 4fs7_A          309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF  362 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred             ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence            4456677888999999999654 65455678999999999999776 666555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.34  E-value=2.4e-05  Score=64.50  Aligned_cols=109  Identities=11%  Similarity=0.161  Sum_probs=71.6

Q ss_pred             cccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCC
Q 048688          120 FIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTK  199 (244)
Q Consensus       120 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  199 (244)
                      .|..+..|+.+.+..+..  .+....|..+..|+.+.+.. .++......|..|.+|+.+.+..+ ++.....+|.++.+
T Consensus       260 aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            345566677777655433  45555666677777777753 343234456777888888888665 44355667778888


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 048688          200 LMGLYLGRNRLQGEIPREFGNLAELEQMSLAENN  233 (244)
Q Consensus       200 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  233 (244)
                      |+.+.+..+ ++.....+|..|.+|+.+++.++.
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            888888544 553445678888888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.34  E-value=1.3e-05  Score=65.77  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcE
Q 048688           99 TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRI  178 (244)
Q Consensus        99 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  178 (244)
                      .+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++ .+....|....+|+.+.+..+ +.......|..+.+|+.
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            3444555555433 22233344556677777777654 43 566666666777777776543 33233446677777777


Q ss_pred             EeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 048688          179 LSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN  232 (244)
Q Consensus       179 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  232 (244)
                      +.+..+.++......|.++.+|+.+.+..+ ++.....+|..|.+|+.+.+..+
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            777776666555667777777777777543 44344556777777777776443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=5.8e-07  Score=70.04  Aligned_cols=95  Identities=21%  Similarity=0.251  Sum_probs=67.4

Q ss_pred             EeCCCCCCCCCCCc----cccCCCCCcEEEecCCccCC--CCCccccCCCCCCEEEccCCCCCCcCChhhhCCCC--CCc
Q 048688           82 LDLSFNRLSGSIPS----AIFTTYTLKDVSFRENQLTG--VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLP--FLD  153 (244)
Q Consensus        82 L~l~~n~i~~~~~~----~l~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~--~L~  153 (244)
                      ++++.|... .++.    ....+++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.+. .+ ..+ ..+.  +|+
T Consensus       148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l-~~l~~l~L~  223 (267)
T 3rw6_A          148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-REL-DKIKGLKLE  223 (267)
T ss_dssp             CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGG-GGGTTSCCS
T ss_pred             ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhh-hhcccCCcc
Confidence            566666433 2222    22468899999999999986  34456678999999999999997 33 222 3333  899


Q ss_pred             EEEcccccccccCC-------ccccCCCCCcEEe
Q 048688          154 YLYLSKNMLHGGIP-------STLSNCTYLRILS  180 (244)
Q Consensus       154 ~L~l~~~~~~~~~~-------~~l~~~~~L~~L~  180 (244)
                      +|++.+|.+.+.+|       ..+..+++|+.|+
T Consensus       224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             eEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99999999876555       2456788898876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=4e-07  Score=70.99  Aligned_cols=79  Identities=25%  Similarity=0.363  Sum_probs=44.4

Q ss_pred             CCCCCcEEEcccccccc--cCCccccCCCCCcEEeeccCcccccCCccccCCC--CCCEEEccCCcccccCC-------c
Q 048688          148 SLPFLDYLYLSKNMLHG--GIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLT--KLMGLYLGRNRLQGEIP-------R  216 (244)
Q Consensus       148 ~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~-------~  216 (244)
                      .+++|+.|++++|.+++  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++.+|++.+..|       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            35566666666666654  2334445566666666666666533  1222222  67777777777665443       2


Q ss_pred             cccCCCCCCEEE
Q 048688          217 EFGNLAELEQMS  228 (244)
Q Consensus       217 ~l~~l~~L~~L~  228 (244)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            245666666665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.30  E-value=8.3e-06  Score=67.32  Aligned_cols=132  Identities=15%  Similarity=0.251  Sum_probs=95.2

Q ss_pred             ccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCC
Q 048688           95 SAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCT  174 (244)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  174 (244)
                      .+|..+.+|+.+.+..+... .....|..+..|+.+.+.. .+. .++...|..+.+|+.+.+..+ ++..-...|.+|.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            45667888999888765443 5556788899999999964 455 788888899999999999765 5534557899999


Q ss_pred             CCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 048688          175 YLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL  234 (244)
Q Consensus       175 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  234 (244)
                      +|+.+.+..+ ++.....+|.++.+|+.+++.++...   ...+..+..|+.+.+..+.+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            9999999765 55466778999999999999887643   24567788899998877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.28  E-value=1.4e-05  Score=65.46  Aligned_cols=149  Identities=13%  Similarity=0.202  Sum_probs=109.2

Q ss_pred             cCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCC
Q 048688           69 IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSS  148 (244)
Q Consensus        69 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~  148 (244)
                      ....+..+..|+.+.+..+ +......++..+..|+.+.+..+ ++......+..+.+|+.+.+..+ +. .++...|..
T Consensus       209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~  284 (379)
T 4h09_A          209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSG  284 (379)
T ss_dssp             CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTT
T ss_pred             eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccc
Confidence            3455666778888888654 33245567788899999998765 44455667788899999998754 54 677888888


Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 048688          149 LPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE  223 (244)
Q Consensus       149 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  223 (244)
                      +.+|+.+.+..+.++..-...|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++.....+|..+..
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            999999999888777555678899999999999765 44456678888999999888654 44344556666643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.27  E-value=2.7e-07  Score=67.09  Aligned_cols=13  Identities=23%  Similarity=0.138  Sum_probs=5.6

Q ss_pred             CCCCCcEEeeccC
Q 048688          172 NCTYLRILSLAYN  184 (244)
Q Consensus       172 ~~~~L~~L~l~~n  184 (244)
                      .+++|+.|+++++
T Consensus       137 ~~~~L~~L~L~~c  149 (176)
T 3e4g_A          137 HFRNLKYLFLSDL  149 (176)
T ss_dssp             GCTTCCEEEEESC
T ss_pred             cCCCCCEEECCCC
Confidence            3444444444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.47  E-value=3.1e-05  Score=57.30  Aligned_cols=109  Identities=8%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             CCCCCEEEccCC-CCCC----cCChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCccccc----C
Q 048688          124 KSSLQHLDFSRN-TLSG----EIPANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGA----V  190 (244)
Q Consensus       124 l~~L~~L~l~~~-~~~~----~l~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~  190 (244)
                      -+.|++|+|+++ .+..    .+...+ ..-+.|+.|++++|.+.+.    +...+..-+.|++|+|+.|.|...    +
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            345555555553 4431    122222 3444566666666655432    222333445666666666665432    1


Q ss_pred             CccccCCCCCCEEEccCC---cccc----cCCccccCCCCCCEEEccCCc
Q 048688          191 PKDIGNLTKLMGLYLGRN---RLQG----EIPREFGNLAELEQMSLAENN  233 (244)
Q Consensus       191 ~~~~~~~~~L~~L~l~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~  233 (244)
                      -+.+.....|++|+|++|   .+.+    .+...+...+.|+.|+++.|.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            223444555666666543   2222    233344555666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.15  E-value=0.00098  Score=45.87  Aligned_cols=56  Identities=20%  Similarity=0.224  Sum_probs=37.8

Q ss_pred             EEEccccccc-ccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          154 YLYLSKNMLH-GGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       154 ~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      .++.+++.++ ..+|..+  ..+++.|+|++|.++...+..|..+++|+.|+|.+|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666664 2345332  236788888888887555666777788888888888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.08  E-value=0.00024  Score=52.53  Aligned_cols=86  Identities=14%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             CCCCCCcEEEcccc-cccc----cCCccccCCCCCcEEeeccCccccc----CCccccCCCCCCEEEccCCcccc----c
Q 048688          147 SSLPFLDYLYLSKN-MLHG----GIPSTLSNCTYLRILSLAYNDFSGA----VPKDIGNLTKLMGLYLGRNRLQG----E  213 (244)
Q Consensus       147 ~~~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~----~  213 (244)
                      ..-+.|++|+++++ .+..    .+.+.+..-+.|+.|+|++|.+...    +...+.....|++|+|+.|.+.+    .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            56778999999985 6643    2445666778999999999998643    23445667899999999999985    3


Q ss_pred             CCccccCCCCCCEEEccCC
Q 048688          214 IPREFGNLAELEQMSLAEN  232 (244)
Q Consensus       214 ~~~~l~~l~~L~~L~l~~n  232 (244)
                      +...+..-+.|+.|++++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            4556777788999999865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.75  E-value=0.0038  Score=42.87  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=17.5

Q ss_pred             CCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccc
Q 048688          126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML  162 (244)
Q Consensus       126 ~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~  162 (244)
                      ++++|+|++|.++ .++...|..+++|++|++.+|.+
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence            3455555555554 44444444444555555554433

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=85.34  E-value=3.2  Score=26.56  Aligned_cols=47  Identities=9%  Similarity=0.041  Sum_probs=28.8

Q ss_pred             cceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC
Q 048688           64 NLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN  111 (244)
Q Consensus        64 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~  111 (244)
                      .++.+-..+|.++..|+.+.+..+- +.....+|..|.+|+.+.+...
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence            4444455667777777777776542 2245556667777777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 91.7 bits (226), Expect = 1e-22
 Identities = 76/302 (25%), Positives = 111/302 (36%), Gaps = 81/302 (26%)

Query: 10  TDQDALLALKAHITHDPTNFLAKNWNTSAPVCN--WTGVTCD--VHSHKVTALNISGLNL 65
            D+ ALL +K  +  +PT     +W  +   CN  W GV CD    +++V  L++SGLNL
Sbjct: 6   QDKQALLQIKKDLG-NPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 66  TG--TIPSQLGNLSS-------------------------LQSLDLSFNRLSGSIPSAIF 98
                IPS L NL                           L  L ++   +SG+IP  + 
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 99  TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS 158
              TL  + F  N L+G  P  I +  +L  + F  N +SG IP +  S       + +S
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 159 KNMLHGGIPSTLSNCTYLRIL--------------------------------------- 179
           +N L G IP T +N     +                                        
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 180 -------SLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
                   L  N   G +P+ +  L  L  L +  N L GEIP + GNL   +  + A N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

Query: 233 NL 234
             
Sbjct: 302 KC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 9e-10
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 25/107 (23%)

Query: 41  CNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT 100
                +     S  +  L++    + GT+P  L  L  L SL++SFN L G IP      
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----- 286

Query: 101 YTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICS 147
                                 N        ++ N      P   C+
Sbjct: 287 --------------------GGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 154 YLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE 213
            L L  N ++G +P  L+   +L  L++++N+  G +P   GNL +        N+    
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

Query: 214 IP 215
            P
Sbjct: 307 SP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 9e-17
 Identities = 47/212 (22%), Positives = 80/212 (37%), Gaps = 15/212 (7%)

Query: 21  HITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQ 80
                    L    +  A     + +T       +  L+++G  L       L +L++L 
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLT 244

Query: 81  SLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGE 140
            LDL+ N++S   P  +     L ++    NQ++ + P        L  L       +  
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-----GLTALTNLELNENQL 297

Query: 141 IPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKL 200
              +  S+L  L YL L  N +    P  +S+ T L+ L  A N  S      + NLT +
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 201 MGLYLGRNRLQGEIPREFGNLAELEQMSLAEN 232
             L  G N++    P    NL  + Q+ L + 
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 7e-10
 Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 13/164 (7%)

Query: 74  GNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS 133
             L++L+SL  + N++S   P  I T   L ++S   NQL       + + ++L  LD +
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 134 RNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKD 193
            N +S   P    S L  L  L L  N +    P  L+  T L  L L  N         
Sbjct: 250 NNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE--DISP 302

Query: 194 IGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
           I NL  L  L L  N +    P    +L +L+++  A N +  +
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV 344

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 2e-15
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 14/193 (7%)

Query: 41  CNWTGVTCDVHSHK---------VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG 91
           C+   V C     +            L++    +T        NL +L +L L  N++S 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 92  SIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF 151
             P A      L+ +   +NQL  +          L+  +     +   +      +   
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMI 127

Query: 152 LDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ 211
           +  L  +     G           L  + +A  + +       G    L  L+L  N++ 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT 184

Query: 212 GEIPREFGNLAEL 224
                    L  L
Sbjct: 185 KVDAASLKGLNNL 197

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 5e-11
 Identities = 39/217 (17%), Positives = 75/217 (34%), Gaps = 28/217 (12%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLK------ 104
           +   +  L +    ++   P     L  L+ L LS N+L         T   L+      
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 112

Query: 105 -----------------DVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICS 147
                            ++     + +G+          L ++  +   ++  IP  +  
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP 171

Query: 148 SLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGR 207
           SL     L+L  N +     ++L     L  L L++N  S      + N   L  L+L  
Sbjct: 172 SL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 208 NRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFMP 244
           N+L  ++P    +   ++ + L  NN+ A+    F P
Sbjct: 229 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 28/158 (17%), Positives = 46/158 (29%), Gaps = 27/158 (17%)

Query: 103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML 162
           L+ V   +  L  V P  +        LD   N ++  I      +L  L  L L  N +
Sbjct: 12  LRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKI 67

Query: 163 HGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMG-------------------- 202
               P   +    L  L L+ N       K    L +L                      
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 203 ---LYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
              L     +  G     F  + +L  + +A+ N+  +
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND 185
            L+ +  S   L  ++P ++         L L  N +         N   L  L L  N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 186 FSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLL 239
            S   P     L KL  LYL +N+L+    +    L EL         ++  + 
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 8/138 (5%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ 112
             +  L+   +  T       G   SL  L L  N+++    +++     L  +    N 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG------GI 166
           ++ V    + N   L+ L  + N L         +   ++  +YL  N +          
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 167 PSTLSNCTYLRILSLAYN 184
           P   +       +SL  N
Sbjct: 265 PGYNTKKASYSGVSLFSN 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 2e-14
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 3/197 (1%)

Query: 48  CDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVS 107
           C  ++      +     L   +P  +   ++ Q + L  NR+S    ++      L  + 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 108 FRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIP 167
              N L  +  +     + L+ LD S N     +       L  L  L+L +  L    P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 168 STLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQM 227
                   L+ L L  N           +L  L  L+L  NR+     R F  L  L+++
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 228 SLAENNLQALLLYSFMP 244
            L +N +  +  ++F  
Sbjct: 183 LLHQNRVAHVHPHAFRD 199

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 6e-11
 Identities = 40/206 (19%), Positives = 65/206 (31%), Gaps = 2/206 (0%)

Query: 30  LAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRL 89
           L   W  S  +           +            L    P+    L  L +L L    L
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 90  SGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSL 149
               P        L+ +  ++N L  +      +  +L HL    N +S  +P      L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGL 176

Query: 150 PFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNR 209
             LD L L +N +    P    +   L  L L  N+ S    + +  L  L  L L  N 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 210 LQGEIPREFGNLAELEQMSLAENNLQ 235
              +  R     A L++   + + + 
Sbjct: 237 WVCDC-RARPLWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 6e-10
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 5/138 (3%)

Query: 51  HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRE 110
               +T L + G  ++         L SL  L L  NR++   P A      L  +    
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTL 170
           N L+ +    +    +LQ+L  + N    +          +L     S + +   +P  L
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 171 SNCTYLRILSLAYNDFSG 188
           +      +  LA ND  G
Sbjct: 269 AG---RDLKRLAANDLQG 283

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.0 bits (120), Expect = 1e-08
 Identities = 33/194 (17%), Positives = 52/194 (26%), Gaps = 19/194 (9%)

Query: 41  CNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT 100
           C  T V C            +G  L   IP  +        L L+ N L       +F  
Sbjct: 8   CEGTTVDC------------TGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR 52

Query: 101 YTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKN 160
                    +           F  +S             EI   +   L  L  L L  N
Sbjct: 53  LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112

Query: 161 MLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGN 220
            +   +P +  +   L  L+LA N F+            L    L     +   P +  +
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPSKVRD 171

Query: 221 LAELEQMSLAENNL 234
           +   +   L  +  
Sbjct: 172 VQIKD---LPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 5/131 (3%)

Query: 32  KNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG 91
                               +  +  L +    +          L  L++L+L  N++S 
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 92  SIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPF 151
            +P +     +L  ++   N          F +   +    +        P+ +   +  
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK-SLNGGAARCGAPSKV-RDVQI 174

Query: 152 LDYLYLSKNML 162
            D   L  +  
Sbjct: 175 KD---LPHSEF 182

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 80  QSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSF-IFNKSSLQHLDFSRNTLS 138
           Q+LDL+   L   +   + +      ++FR  +     P    F+   +QH+D S + + 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS---QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 139 GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILS 180
                 I S    L  L L    L   I +TL+  + L  L+
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 44  TGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYT- 102
             VT  + S  V A       +   +         +Q +DLS + +  S    I +  + 
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 103 LKDVSFRENQLTGVFPSFIFNKSSLQHLDF 132
           L+++S    +L+    + +   S+L  L+ 
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 4e-08
 Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSL 181
            +Q LD     LS    A +   L     + L    L       I S L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 182 AYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG 212
             N+        +    +     + +  LQ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 6e-07
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 78  SLQSLDLSFNRLSGSIPSAIFTT-YTLKDVSFRENQLTGV----FPSFIFNKSSLQHLDF 132
            +QSLD+    LS +  + +       + V   +  LT        S +    +L  L+ 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 133 SRNTLSGEIPANICSSL----PFLDYLYLSKNMLH 163
             N L       +   L      +  L L    L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-06
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 28/119 (23%)

Query: 70  PSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH 129
                  S L+ L L+   +S S  S++                     + +    SL+ 
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSL--------------------AATLLANHSLRE 401

Query: 130 LDFSRNTLSGEIPANICSSLP----FLDYLYLSKNMLHGGIPSTLS----NCTYLRILS 180
           LD S N L       +  S+      L+ L L        +   L     +   LR++S
Sbjct: 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 117 FPSFIFNKSSLQHLDFSRNTLSGEIPANICSSL---PFLDYLYLSKNMLHGGIPSTLS-- 171
                   S L+ L  +   +S    +++ ++L     L  L LS N L       L   
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 172 ---NCTYLRILSLAYNDFSGAVPKDIGNLTK 199
                  L  L L    +S  +   +  L K
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 16/129 (12%), Positives = 31/129 (24%), Gaps = 23/129 (17%)

Query: 21  HITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGT----IPSQLGNL 76
                       N                     +  L ++  +++ +    + + L   
Sbjct: 337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 396

Query: 77  SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT 136
            SL+ LDLS N L  +    +                     S       L+ L      
Sbjct: 397 HSLRELDLSNNCLGDAGILQLVE-------------------SVRQPGCLLEQLVLYDIY 437

Query: 137 LSGEIPANI 145
            S E+   +
Sbjct: 438 WSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 4e-05
 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 146 CSSLPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLAYNDFSGAVPKDIG-----N 196
                 L  L+L+   +       + +TL     LR L L+ N    A    +       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 197 LTKLMGLYLGRNRLQGEIPREFGNLAE 223
              L  L L       E+      L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 54 KVTALNISGLNLTG----TIPSQLGNLSSLQSLDLSFNRLSGSIPSAIF 98
          +   + +    LT      I S L    +L  L+L  N L       + 
Sbjct: 28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 76

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 46/217 (21%), Positives = 65/217 (29%), Gaps = 30/217 (13%)

Query: 39  PVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIF 98
           P+C  + V   +       +N    NLT  +P  L        L LS N L     + + 
Sbjct: 2   PICEVSKVASHLE------VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLM 52

Query: 99  TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLS-------------------- 138
               L  ++    +LT +             L  ++                        
Sbjct: 53  PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 139 GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLT 198
             +P      L  L  LYL  N L    P  L+    L  LSLA N+ +      +  L 
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 199 KLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQ 235
            L  L L  N L   IP+ F     L    L  N   
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L+++  +LT  +   L  L  +  LDLS NRL    P+ +     L+ +   +N L  V 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHG 164
                 +   Q L    N L          S P L  L L  N L  
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 80  QSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSG 139
           + L L+   L  ++   +     +  +    N+L  + P+     ++L+ L+  + + + 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPAL----AALRCLEVLQASDNA 54

Query: 140 EIPANICSSLPFLDYLYLSKNMLHGG-IPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLT 198
               +  ++LP L  L L  N L        L +C  L +L+L  N            L 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLA 113

Query: 199 KLM 201
           +++
Sbjct: 114 EML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 9e-04
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 128 QHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFS 187
           + L  +   L+  +  ++   L  + +L LS N L    P+ L+    L +L  + N   
Sbjct: 1   RVLHLAHKDLT--VLCHL-EQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE 56

Query: 188 GAVPKDIGNLTKLMGLYLGRNRLQG-EIPREFGNLAELEQMSLAENNL 234
                      +   L L  NRLQ     +   +   L  ++L  N+L
Sbjct: 57  NVDGVANLPRLQE--LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 111 NQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGI-PST 169
             LT      +     + HLD S N L       +  +L  L  L + +   +       
Sbjct: 8   KDLTV--LCHLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENVDG 60

Query: 170 LSNCTYLRILSLAYNDF-SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAEL 224
           ++N   L+ L L  N     A  + + +  +L+ L L  N L  +       LAE+
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 33  NWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGS 92
                    +    +       +  LN+S   L   +P+    L   + L  SFN L+  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-E 318

Query: 93  IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS 133
           +P        LK +    N L   FP       S++ L  +
Sbjct: 319 VPELPQ---NLKQLHVEYNPLRE-FPDIP---ESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 10/112 (8%)

Query: 41  CNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTT 100
                        ++          +  I S      SL+ L++S N+L   +P+     
Sbjct: 248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP-- 304

Query: 101 YTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL 152
             L+ +    N L  V         +L+ L    N L  E P +I  S+  L
Sbjct: 305 -RLERLIASFNHLAEVPELP----QNLKQLHVEYNPLR-EFP-DIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 48  CDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVS 107
            D    +   L ++ L L+ ++P    +L   +SL  S N L+  +P       +LK + 
Sbjct: 33  RDCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQ---SLKSLL 84

Query: 108 FRENQLTGVFPSFIFNKSSLQHLDFS 133
              N L     +       L++L  S
Sbjct: 85  VDNNNL----KALSDLPPLLEYLGVS 106

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 139 GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSL 181
            E+P ++         L +S+  +H      L N   LR  S 
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 6e-04
 Identities = 26/233 (11%), Positives = 51/233 (21%), Gaps = 38/233 (16%)

Query: 41  CNWTGVTCDVHSHK---------VTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSG 91
           C+     C                  L      L             L+ +++S N +  
Sbjct: 8   CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 92  SIPSAIFTTYTLKDVSFRENQL---------------------------TGVFPSFIFNK 124
            I + +F+          E                                     I + 
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 125 SSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYN 184
             +         +      +          L+L+KN +        +      +     N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 185 DFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL 237
           +            +  + L + R R+         NL +L   S    NL+ L
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 19/213 (8%)

Query: 30  LAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRL 89
           LA     +A   N T          +T L+  G  +T      +  L++L  L+L  N++
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75

Query: 90  SGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSL 149
           +   P    T  T  ++S    +           K+         +       +N+    
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 150 PFLDYL-------------YLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGN 196
             L+ +             YLS         + L+N + L  L    N  S   P  + +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193

Query: 197 LTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
           L  L+ ++L  N++    P    N + L  ++L
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 15/177 (8%)

Query: 53  HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQ 112
           + +  +  +  ++       +  L ++  L L+ N+L+   P A         +   + +
Sbjct: 46  NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103

Query: 113 LTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSN 172
                      KS         + ++G +      SL   +       +L         +
Sbjct: 104 DLSSLKDLKKLKSLSLE-HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 162

Query: 173 CTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSL 229
               +I  +            +  LTKL  LYL +N +     R    L  L+ + L
Sbjct: 163 LEDNQISDI----------VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 207

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 8e-04
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 126 SLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYND 185
           S Q LD        ++      +      L    +M    +     N   L  L+L+ N 
Sbjct: 23  SQQALDLKGLRSDPDL-----VAQNIDVVLNRRSSMAAT-LRIIEENIPELLSLNLSNNR 76

Query: 186 FSG--AVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL 234
                 +   +     L  L L  N L+ E   +     +LE++ L  N+L
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%)

Query: 83  DLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIP 142
           +L   ++   +   +   Y     +     L       +  ++    L+   +       
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMA--ATL 57

Query: 143 ANICSSLPFLDYLYLSKNML--HGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKL 200
             I  ++P L  L LS N L     + S +     L+IL+L+ N+       D     KL
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 201 MGLYLGRNRLQGEIPREFGNLAEL 224
             L+L  N L      +   ++ +
Sbjct: 118 EELWLDGNSLSDTFRDQSTYISAI 141

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 58  LNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVF 117
           L++ G  +   I +    L    ++D S N +       +     LK +    N++  + 
Sbjct: 23  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLR--RLKTLLVNNNRICRIG 79

Query: 118 PSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLS---KNMLHGGIPSTLSNCT 174
                    L  L  + N+L      +  +SL  L YL +               +    
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 175 YLRIL 179
            +R+L
Sbjct: 140 QVRVL 144

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 5/75 (6%)

Query: 21  HITHDPTNFLAKNWNTSAPVCNWTGVTCDVHSHKVTALNISGLNLTGTIPSQL-----GN 75
              +     L     ++            + +  +  L +    +       L       
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 76  LSSLQSLDLSFNRLS 90
           +  L  L+L+ NR S
Sbjct: 301 MPDLLFLELNGNRFS 315

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.7
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.24
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.19
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.1e-33  Score=225.04  Aligned_cols=229  Identities=34%  Similarity=0.541  Sum_probs=175.9

Q ss_pred             CchhHHHHHHHHHHhcccCCcchhcCCCCCCCCCcc--eeeeeeCCC--CCceEEEEeCCCccee--ccCccCCCCCCCC
Q 048688            7 TITTDQDALLALKAHITHDPTNFLAKNWNTSAPVCN--WTGVTCDVH--SHKVTALNISGLNLTG--TIPSQLGNLSSLQ   80 (244)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~~~~~--~~~l~~L~l~~~~~~~--~~~~~~~~l~~L~   80 (244)
                      +.+.|++||++||+++.+ + ..+++ |..+.++|.  |.||.|+..  ..+|+.|+++++.+.+  .+|+.+..+++|+
T Consensus         3 c~~~e~~aLl~~k~~~~~-~-~~l~s-W~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~   79 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGN-P-TTLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTC-C-GGGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCHHHHHHHHHHHHHCCC-C-CcCCC-CCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence            578899999999999964 3 35667 888889994  999999863  3479999999998876  4789999999999


Q ss_pred             EEeCCC-CCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccc
Q 048688           81 SLDLSF-NRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK  159 (244)
Q Consensus        81 ~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~  159 (244)
                      +|++++ |.+.+.+|..+.++++|++|++++|.+.+..+..+..+..|+++++..|.+.+.+|..+ ..++.++++++++
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~  158 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDG  158 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCS
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh-ccCcccceeeccc
Confidence            999986 78888999999999999999999998876666666666666666666666554555544 5555555555555


Q ss_pred             ccccccCCcccc------------------------------------------------CCCCCcEEeeccCcccccCC
Q 048688          160 NMLHGGIPSTLS------------------------------------------------NCTYLRILSLAYNDFSGAVP  191 (244)
Q Consensus       160 ~~~~~~~~~~l~------------------------------------------------~~~~L~~L~l~~n~~~~~~~  191 (244)
                      |.+.+.+|..+.                                                .+++++.+++.+|.+.+.+ 
T Consensus       159 n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-  237 (313)
T d1ogqa_         159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-  237 (313)
T ss_dssp             SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            555444443333                                                3344555555555555333 


Q ss_pred             ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcccCC
Q 048688          192 KDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       192 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      ..+..+++|+.|++++|++++.+|..++.+++|++|+|++|+|+|.+|.
T Consensus       238 ~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            3466678899999999999988999999999999999999999988885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.6e-24  Score=165.56  Aligned_cols=179  Identities=27%  Similarity=0.239  Sum_probs=159.5

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      ++++.|+|++|.+++..+..|..+++|++|++++|.++ .++ .+..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            57999999999999777788999999999999999997 444 4578999999999999998 45667889999999999


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      +++.+. .++...+..+.++++|++.+|.++...+..+..+++++.+++++|.+++..+..+..+++|++|+|++|+++ 
T Consensus       108 ~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         108 SFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             cccccc-eeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            999997 676666688999999999999998666677888999999999999999777788899999999999999999 


Q ss_pred             cCCccccCCCCCCEEEccCCccCc
Q 048688          213 EIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       213 ~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      .+|+.+..+++|+.|++++|++.+
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccChhHCCCCCCCEEEecCCCCCC
Confidence            888888899999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.4e-22  Score=160.93  Aligned_cols=201  Identities=22%  Similarity=0.290  Sum_probs=155.7

Q ss_pred             CCCcceeeeeeCC---------CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEe
Q 048688           38 APVCNWTGVTCDV---------HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSF  108 (244)
Q Consensus        38 ~~~c~~~g~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  108 (244)
                      .-.|.+..+.|..         -++.+++|++++|.++...+..|..+++|++|++++|.+....|..|..+++|++|++
T Consensus         7 ~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_           7 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            3456788888853         1367999999999998666668999999999999999998667888999999999999


Q ss_pred             cCCccCCCC-----------------------------------------------CccccCCCCCCEEEccCCCCCCcC
Q 048688          109 RENQLTGVF-----------------------------------------------PSFIFNKSSLQHLDFSRNTLSGEI  141 (244)
Q Consensus       109 ~~~~l~~~~-----------------------------------------------~~~~~~l~~L~~L~l~~~~~~~~l  141 (244)
                      ++|.++...                                               +..+..+++|+++++.+|.+. .+
T Consensus        87 ~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l  165 (305)
T d1xkua_          87 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI  165 (305)
T ss_dssp             CSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred             cCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-cc
Confidence            887655221                                               111233455666666666665 55


Q ss_pred             ChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCC
Q 048688          142 PANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNL  221 (244)
Q Consensus       142 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  221 (244)
                      +...   .+++++|++++|.+....+..+..++.++.|++++|.+.+..+..+..+++|++|+|++|+++ .+|..+..+
T Consensus       166 ~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l  241 (305)
T d1xkua_         166 PQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  241 (305)
T ss_dssp             CSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             Cccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccc
Confidence            5433   567778888887777667777888888999999999888777788888899999999999988 677788889


Q ss_pred             CCCCEEEccCCccCcccCCCCC
Q 048688          222 AELEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       222 ~~L~~L~l~~n~l~~~~~~~~~  243 (244)
                      ++|++|++++|+|+.+....|.
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSS
T ss_pred             cCCCEEECCCCccCccChhhcc
Confidence            9999999999999887666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=159.55  Aligned_cols=185  Identities=21%  Similarity=0.220  Sum_probs=138.5

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCC-------------------------CccccCCCCCcEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSI-------------------------PSAIFTTYTLKDV  106 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-------------------------~~~l~~l~~L~~L  106 (244)
                      +..++.|+|++|.++...+..|..+++|++|++++|.+....                         +..+..+++|++|
T Consensus        31 p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            346788999999998777778899999999999887665322                         3345556777777


Q ss_pred             EecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcc
Q 048688          107 SFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDF  186 (244)
Q Consensus       107 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  186 (244)
                      ++++|.+....+..+..+.+|+.+++.+|.++ .++...+..+++|++|++++|.++...+..+..+++|+.+++.+|.+
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            77777776555556666777778888877776 66666656777788888888877766666777778888888888877


Q ss_pred             cccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          187 SGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       187 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ++..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.
T Consensus       190 ~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            777777777778888888888888766666777778888888888877653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-21  Score=152.39  Aligned_cols=182  Identities=26%  Similarity=0.234  Sum_probs=154.4

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEc
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDF  132 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  132 (244)
                      .....++.++++++ .+|+.+.  +++++|+|++|.+.+..+..|..+++|++|++++|.++.. + .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence            34556788888888 5676653  5899999999999855567899999999999999999843 3 3568999999999


Q ss_pred             cCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccc
Q 048688          133 SRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                      ++|.+. ..+..+ ..+++|++|+++++.+....+..+..+.+++.|.+.+|.++...+..+..+++++.+++++|.+++
T Consensus        85 s~N~l~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          85 SHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccc-cccccc-ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            999997 566555 789999999999999986667788899999999999999987777777889999999999999997


Q ss_pred             cCCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          213 EIPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       213 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      ..+..+..+++|++|+|++|+|+.+ |.++
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~  191 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLYTI-PKGF  191 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCC-CTTT
T ss_pred             cCccccccccccceeecccCCCccc-ChhH
Confidence            7778899999999999999999964 4443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-21  Score=154.17  Aligned_cols=176  Identities=21%  Similarity=0.193  Sum_probs=142.9

Q ss_pred             cceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCCh
Q 048688           64 NLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPA  143 (244)
Q Consensus        64 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~  143 (244)
                      .+....+..|..+++|++|++++|.+....+..+..+.+|+.+++++|.++...+..+..+++|++|++++|.+. .++.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccch
Confidence            333344677888999999999999988666677888999999999999999777778889999999999999998 7877


Q ss_pred             hhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 048688          144 NICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAE  223 (244)
Q Consensus       144 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  223 (244)
                      ..+..+++|+.+++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+.+|++|++++|++...-+. ..-...
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~  249 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAW  249 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHH
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHH
Confidence            7778999999999999999988899999999999999999999977778899999999999999998743221 111122


Q ss_pred             CCEEEccCCccCcccCCC
Q 048688          224 LEQMSLAENNLQALLLYS  241 (244)
Q Consensus       224 L~~L~l~~n~l~~~~~~~  241 (244)
                      ++.+....+.+.+..|..
T Consensus       250 l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         250 LQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             HHHCCSEECCCBEEESGG
T ss_pred             HHhCcCCCCceEeCCchH
Confidence            344455555555554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=7e-23  Score=163.27  Aligned_cols=184  Identities=30%  Similarity=0.411  Sum_probs=150.1

Q ss_pred             CCCceEEEEeCC-CcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCE
Q 048688           51 HSHKVTALNISG-LNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQH  129 (244)
Q Consensus        51 ~~~~l~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  129 (244)
                      .++++++|++++ |.+.+.+|..|..+++|++|++++|.+.+..+..+..+.+|+++++++|.+.+..|..+..++.+++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            467899999987 7888889999999999999999999988777777888888888888888877777888888888888


Q ss_pred             EEccCCCCCCcCChhhh-----------------------------------------------CCCCCCcEEEcccccc
Q 048688          130 LDFSRNTLSGEIPANIC-----------------------------------------------SSLPFLDYLYLSKNML  162 (244)
Q Consensus       130 L~l~~~~~~~~l~~~~~-----------------------------------------------~~~~~L~~L~l~~~~~  162 (244)
                      +++++|.+.+.+|..+.                                               ..+++++.+++.++.+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88888776544444331                                               2334566666666666


Q ss_pred             cccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          163 HGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       163 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      .+.+ ..+..+++|+.|++++|.+++.+|..+..+++|++|+|++|.+++.+|. ++.+++|+.+++++|+..+
T Consensus       234 ~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         234 AFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             cccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            5433 3577789999999999999999999999999999999999999988885 6788999999999998544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=4.7e-18  Score=134.43  Aligned_cols=186  Identities=22%  Similarity=0.226  Sum_probs=146.0

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCcc----------------------------------
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSA----------------------------------   96 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~----------------------------------   96 (244)
                      .+.+++.|+++++.+....+..|..+++|++|++++|.+. .+|..                                  
T Consensus        53 ~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~  131 (305)
T d1xkua_          53 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL  131 (305)
T ss_dssp             TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred             ccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchhhhhhhhhccccchhhhhhhhhhcccccccccc
Confidence            4678899999999888777888999999999998887765 22211                                  


Q ss_pred             --------------ccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccc
Q 048688           97 --------------IFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNML  162 (244)
Q Consensus        97 --------------l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~  162 (244)
                                    +..+++|+++++.+|.+. .++..  ..++|++|++.+|...+..+ ..+..++.++.|++++|.+
T Consensus       132 ~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~L~~s~n~l  207 (305)
T d1xkua_         132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSI  207 (305)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCCh-hHhhccccccccccccccc
Confidence                          122557888888888876 34433  36899999999999884444 4448899999999999999


Q ss_pred             cccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCC------ccccCCCCCCEEEccCCccCc
Q 048688          163 HGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP------REFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       163 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      ....+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++....      .....+.+|+.|++++|+++.
T Consensus       208 ~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         208 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            9777888999999999999999998 567889999999999999999984322      233467889999999999863


Q ss_pred             --ccCCCC
Q 048688          237 --LLLYSF  242 (244)
Q Consensus       237 --~~~~~~  242 (244)
                        +.|..|
T Consensus       287 ~~~~~~~f  294 (305)
T d1xkua_         287 WEIQPSTF  294 (305)
T ss_dssp             GGSCGGGG
T ss_pred             CcCCHhHh
Confidence              344443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=3.1e-19  Score=132.12  Aligned_cols=175  Identities=21%  Similarity=0.239  Sum_probs=137.2

Q ss_pred             EEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCC-CCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCC
Q 048688           57 ALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGS-IPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRN  135 (244)
Q Consensus        57 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  135 (244)
                      .++.++++++ .+|..+.  +++++|++++|.|+.. .+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4566677777 5666553  6899999999999753 4567789999999999999999888888999999999999999


Q ss_pred             CCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCC-ccccCCCCCCEEEccCCcccccC
Q 048688          136 TLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVP-KDIGNLTKLMGLYLGRNRLQGEI  214 (244)
Q Consensus       136 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~  214 (244)
                      .+. .+++..|..+++|++|++++|.++...+..|..+++|++|++++|.+..... .++.  ..++.+.+..+.++...
T Consensus        89 ~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          89 KIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred             ccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence            998 8888888999999999999999997777889999999999999998863322 1111  22445556666665445


Q ss_pred             CccccCCCCCCEEEccCCccCcccCC
Q 048688          215 PREFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       215 ~~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      |.   .++.++.++++.|.+.+..+.
T Consensus       166 p~---~l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         166 PS---KVRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             ST---TTTTSBGGGSCTTTCCCCCC-
T ss_pred             Ch---hhcCCEeeecCHhhCcCCCCC
Confidence            54   455667888999999876554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=9.4e-18  Score=125.72  Aligned_cols=165  Identities=25%  Similarity=0.385  Sum_probs=137.0

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +..++.|+++++.++. ++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.++. ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccc
Confidence            3568899999999874 33 37889999999999999984 33 46789999999999999984 34 478899999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      +.++.+. .++ .+ ..++.++.+++++|.+++  +..+..+++|+.+++++|.+++ ++ .+..+++|++|++++|.++
T Consensus       119 l~~~~~~-~~~-~l-~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGIS-DIN-GL-VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCC-CCG-GG-GGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-ccc-cc-cccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC
Confidence            9999886 554 34 678999999999998863  3456788999999999999974 33 3788999999999999998


Q ss_pred             ccCCccccCCCCCCEEEccC
Q 048688          212 GEIPREFGNLAELEQMSLAE  231 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~  231 (244)
                       .++ .+..+++|++|++++
T Consensus       192 -~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 -DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -BCG-GGTTCTTCSEEEEEE
T ss_pred             -CCh-hhcCCCCCCEEEccC
Confidence             455 589999999999975

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-17  Score=127.58  Aligned_cols=189  Identities=17%  Similarity=0.140  Sum_probs=139.6

Q ss_pred             CceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCC-CccccCCCCCcEEEecC-CccCCCCCccccCCCCCCEE
Q 048688           53 HKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSI-PSAIFTTYTLKDVSFRE-NQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L  130 (244)
                      .++++|+++++.++...+..|.++++|++|++++|.+...+ +..|..++.++++.+.. +.+....+..+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            47899999999998666778999999999999999887443 45678899999998865 56776777788999999999


Q ss_pred             EccCCCCCCcCCh-hhhCCCCCCcEEEcccccccccCCccccCCC-CCcEEeeccCcccccCCccccCCCCCCEE-EccC
Q 048688          131 DFSRNTLSGEIPA-NICSSLPFLDYLYLSKNMLHGGIPSTLSNCT-YLRILSLAYNDFSGAVPKDIGNLTKLMGL-YLGR  207 (244)
Q Consensus       131 ~l~~~~~~~~l~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L-~l~~  207 (244)
                      ++.++.+. ..+. .....+..+..+....+.+....+..+..++ .++.|++.+|.++...+..+ ...++.++ ++.+
T Consensus       109 ~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~  186 (242)
T d1xwdc1         109 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDN  186 (242)
T ss_dssp             EEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTC
T ss_pred             ccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccc
Confidence            99999887 4433 2223455555555566666644445565554 78889999998875444443 44555555 4677


Q ss_pred             CcccccCCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688          208 NRLQGEIPREFGNLAELEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       208 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  243 (244)
                      |.++...+..|..+++|++|++++|+++.+.+..|.
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            788744455688899999999999999877665553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.1e-17  Score=122.76  Aligned_cols=161  Identities=26%  Similarity=0.377  Sum_probs=115.8

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      ..+++.|+++++.++. + +.+..+++|++|++++|.+++. + .+..+++|++|++++|.+.. .+ .+..++.|++|+
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-c-cccCCccccccccccccccc-cc-cccccccccccc
Confidence            4567788888888763 3 3467788888888888888633 3 37788888888888887763 23 367788888888


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      ++++.+. .++ .+ ..+++|+.+++++|.+. .++ .+..+++++.|++.+|.+++. + .+.++++|++|++++|+++
T Consensus       113 l~~~~~~-~~~-~~-~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQIT-DID-PL-KNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCC-CCG-GG-TTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-ccc-cc-chhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCC
Confidence            8887775 332 33 66788888888888776 333 467778888888888887643 3 4677888888888888887


Q ss_pred             ccCCccccCCCCCCEE
Q 048688          212 GEIPREFGNLAELEQM  227 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L  227 (244)
                      + ++ .++.+++|+.|
T Consensus       186 ~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         186 D-IS-VLAKLTNLESL  199 (199)
T ss_dssp             C-CG-GGGGCTTCSEE
T ss_pred             C-Cc-cccCCCCCCcC
Confidence            3 43 46777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2e-18  Score=127.61  Aligned_cols=159  Identities=19%  Similarity=0.168  Sum_probs=126.6

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCC-CCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEc
Q 048688           79 LQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTG-VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYL  157 (244)
Q Consensus        79 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l  157 (244)
                      .++++.+++.++ .+|..+.  +++++|+|++|.++. ..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeee
Confidence            457888999888 7777653  689999999999975 44566788999999999999998 666666688999999999


Q ss_pred             ccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCcc
Q 048688          158 SKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQAL  237 (244)
Q Consensus       158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  237 (244)
                      ++|.++...+..|.++++|++|+|++|.++...++.|..+++|+++++++|.+..... ...-...++.+.+..+.+++.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeC
Confidence            9999997777889999999999999999998888889999999999999998874322 111122355666777777776


Q ss_pred             cCCCC
Q 048688          238 LLYSF  242 (244)
Q Consensus       238 ~~~~~  242 (244)
                      .|..+
T Consensus       165 ~p~~l  169 (192)
T d1w8aa_         165 APSKV  169 (192)
T ss_dssp             SSTTT
T ss_pred             CChhh
Confidence            66554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=8e-17  Score=121.98  Aligned_cols=173  Identities=24%  Similarity=0.349  Sum_probs=126.3

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      +.+++.|++.++.++. + +.+..+++|++|++++|.+.+..  .+..+++++++++++|.++. + ..+..+++|++++
T Consensus        40 l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccccc
Confidence            4578888999998874 4 35788899999999998887332  37888899999998888763 2 3467888999999


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      ++++... .+. .+ ...+.+..+.+..+.+...  ..+..+++|+.|++.+|.+...  ..+.++++|+.|++++|+++
T Consensus       114 l~~~~~~-~~~-~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         114 LTSTQIT-DVT-PL-AGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             CTTSCCC-CCG-GG-TTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-ccc-hh-ccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccC
Confidence            9888775 332 23 4567777888877766522  3356677888888888877532  23667788888888888877


Q ss_pred             ccCCccccCCCCCCEEEccCCccCcccC
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQALLL  239 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~  239 (244)
                      + ++ .++.+++|++|++++|+++++.|
T Consensus       187 ~-l~-~l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         187 D-IS-PLASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             C-CG-GGGGCTTCCEEECTTSCCCBCGG
T ss_pred             C-Ch-hhcCCCCCCEEECcCCcCCCCcc
Confidence            3 43 36778888888888888877654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.2e-16  Score=118.51  Aligned_cols=165  Identities=24%  Similarity=0.348  Sum_probs=132.9

Q ss_pred             EeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCC
Q 048688           59 NISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLS  138 (244)
Q Consensus        59 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  138 (244)
                      .+..+.+++.+.  ...+.++++|+++++.+. .+ ..+..+++|++|++++|.+++..  .+..+++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Cc-cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc
Confidence            344454443322  235789999999999997 33 35788999999999999998543  3889999999999999987


Q ss_pred             CcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccc
Q 048688          139 GEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREF  218 (244)
Q Consensus       139 ~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  218 (244)
                       .++. + ..++.|++++++++....  ...+..+++|+.|++++|.+. .++ .+..+++++.|++.+|.+++ ++ .+
T Consensus        98 -~~~~-l-~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l  168 (199)
T d2omxa2          98 -DITP-L-ANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PL  168 (199)
T ss_dssp             -CCGG-G-TTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GG
T ss_pred             -cccc-c-cccccccccccccccccc--ccccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cc
Confidence             6653 4 789999999999988763  235778999999999999986 333 57889999999999999984 43 48


Q ss_pred             cCCCCCCEEEccCCccCccc
Q 048688          219 GNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       219 ~~l~~L~~L~l~~n~l~~~~  238 (244)
                      +.+++|+.|++++|+++.+.
T Consensus       169 ~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         169 ANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             TTCTTCCEEECCSSCCCCCG
T ss_pred             cCCCCCCEEECCCCCCCCCc
Confidence            89999999999999998853

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.5e-16  Score=129.24  Aligned_cols=172  Identities=26%  Similarity=0.424  Sum_probs=93.0

Q ss_pred             CCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEE
Q 048688           52 SHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLD  131 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  131 (244)
                      .+++..++++++.+++..+  +..+++|++|++++|.+. .+ ..+..+++|+.|++++|.+++..  .+..+++|++|+
T Consensus       196 l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Cc-chhhcccccchhccccCccCCCC--cccccccCCEee
Confidence            3456666666666654332  344566666777666665 22 24556666666666666665432  255666666666


Q ss_pred             ccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCccc
Q 048688          132 FSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQ  211 (244)
Q Consensus       132 l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  211 (244)
                      ++++.+. .+++ + ..++.++.+.+..|.+.+  ...+..+++++.|++++|.+++. + .+..+++|+.|++++|.++
T Consensus       270 l~~~~l~-~~~~-~-~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         270 LGANQIS-NISP-L-AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             CCSSCCC-CCGG-G-TTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC
T ss_pred             ccCcccC-CCCc-c-cccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC
Confidence            6666665 3332 2 345555555555555542  12344455555555555555432 1 2445555555555555554


Q ss_pred             ccCCccccCCCCCCEEEccCCccCccc
Q 048688          212 GEIPREFGNLAELEQMSLAENNLQALL  238 (244)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~n~l~~~~  238 (244)
                       .++ .++.+++|++|++++|++++++
T Consensus       343 -~l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         343 -DVS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             -CCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             -CCh-hHcCCCCCCEEECCCCcCCCCh
Confidence             222 3555555555555555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.7e-16  Score=126.22  Aligned_cols=168  Identities=27%  Similarity=0.384  Sum_probs=140.3

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      ...+++.|+++++.++.  .+.+..+++|+.+++++|.+.+..  .+..+++|++|+++++.+.+..  .+..++.++.+
T Consensus       217 ~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l  290 (384)
T d2omza2         217 ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNL  290 (384)
T ss_dssp             GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             ccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccc
Confidence            35689999999998874  346788999999999999987433  4788999999999999988543  36789999999


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      .+..|.+. .++ .+ ..++++++|++++|.+++. + .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++
T Consensus       291 ~~~~n~l~-~~~-~~-~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         291 ELNENQLE-DIS-PI-SNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             ECCSSCCS-CCG-GG-GGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCC
T ss_pred             cccccccc-ccc-cc-chhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcC
Confidence            99999987 443 34 6789999999999999853 3 37889999999999999974 44 688999999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCc
Q 048688          211 QGEIPREFGNLAELEQMSLAENN  233 (244)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~n~  233 (244)
                      ++..|  +..+++|+.|++++|.
T Consensus       364 ~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         364 SDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCChh--hccCCCCCEeeCCCCc
Confidence            95443  8899999999999983

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=6.9e-16  Score=116.74  Aligned_cols=166  Identities=24%  Similarity=0.345  Sum_probs=136.3

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEE
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHL  130 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  130 (244)
                      ++++++.|++++|.+.+..  .+..+++++++++++|.++ .+ ..+..+++|+.+.++++...+.  ..+...+.++.+
T Consensus        61 ~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l  134 (227)
T d1h6ua2          61 YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVL  134 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred             cCCCCcEeecCCceeeccc--ccccccccccccccccccc-cc-cccccccccccccccccccccc--chhccccchhhh
Confidence            5789999999999988543  3889999999999999886 33 3678999999999999887643  346678999999


Q ss_pred             EccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcc
Q 048688          131 DFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRL  210 (244)
Q Consensus       131 ~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  210 (244)
                      .+.++.+. ... .+ ..+++|++|++++|.+...  ..++++++|+.|++++|.+++ ++ .+..+++|++|++++|++
T Consensus       135 ~~~~~~~~-~~~-~~-~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         135 YLDLNQIT-NIS-PL-AGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             ECCSSCCC-CCG-GG-GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCC
T ss_pred             hchhhhhc-hhh-hh-ccccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcC
Confidence            99998886 332 23 5688999999999988632  347889999999999999874 33 478899999999999999


Q ss_pred             cccCCccccCCCCCCEEEccC
Q 048688          211 QGEIPREFGNLAELEQMSLAE  231 (244)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~  231 (244)
                      ++ ++ .+..+++|+.|++++
T Consensus       208 t~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         208 SD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CB-CG-GGTTCTTCCEEEEEE
T ss_pred             CC-Cc-ccccCCCCCEEEeeC
Confidence            84 44 388999999999975

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=6.3e-16  Score=115.59  Aligned_cols=151  Identities=23%  Similarity=0.298  Sum_probs=126.4

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcE
Q 048688           75 NLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDY  154 (244)
Q Consensus        75 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~  154 (244)
                      ++..|++|+++++.+.. ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|.++ .++ .+ ..+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLS-SL-KDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GG-TTCTTCCE
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-ccc-cc-cccccccc
Confidence            46789999999999973 33 478899999999999999854 3 3678999999999999997 665 34 78999999


Q ss_pred             EEcccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 048688          155 LYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNL  234 (244)
Q Consensus       155 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  234 (244)
                      |++.+|.+. .+ ..+..++.++.+++++|.+++  +..+..+++|+.+++++|.+++ ++ .+..+++|+.|++++|++
T Consensus       117 L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         117 LSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccc-cc-ccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCC
Confidence            999999886 33 457888999999999999873  3356788999999999999984 44 388999999999999999


Q ss_pred             Cccc
Q 048688          235 QALL  238 (244)
Q Consensus       235 ~~~~  238 (244)
                      +.+.
T Consensus       191 ~~l~  194 (210)
T d1h6ta2         191 SDLR  194 (210)
T ss_dssp             CBCG
T ss_pred             CCCh
Confidence            8753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.1e-16  Score=111.20  Aligned_cols=110  Identities=21%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             CCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCC
Q 048688           73 LGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFL  152 (244)
Q Consensus        73 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L  152 (244)
                      |.+...+++|++++|.|+ .++..+..+++|++|++++|.++.. + .+..+++|++|++++|.++ .++..++..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhccccccc-CCCcccccccccc
Confidence            345556666777766665 4454445566666666666666532 2 3555666666666666665 5555444455666


Q ss_pred             cEEEcccccccccCC--ccccCCCCCcEEeeccCccc
Q 048688          153 DYLYLSKNMLHGGIP--STLSNCTYLRILSLAYNDFS  187 (244)
Q Consensus       153 ~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~n~~~  187 (244)
                      ++|++++|.+.. ++  ..+..+++|+.|++.+|+++
T Consensus        90 ~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccc-cccccccccccccchhhcCCCccc
Confidence            666666665542 22  23444555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.2e-16  Score=111.19  Aligned_cols=127  Identities=14%  Similarity=0.135  Sum_probs=81.4

Q ss_pred             ccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCC
Q 048688           97 IFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYL  176 (244)
Q Consensus        97 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  176 (244)
                      +.+..++++|++++|.++. ++..+..++.|++|++++|.++ .++ .+ ..+++|++|++++|.++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~-~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GF-PLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CC-CCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-Cc-ccCcchhhhhcccccccCCCcccccccccc
Confidence            4456667777777777763 3555556777777777777776 553 23 667777777777777764333445567777


Q ss_pred             cEEeeccCcccccCC-ccccCCCCCCEEEccCCcccccCCc----cccCCCCCCEEE
Q 048688          177 RILSLAYNDFSGAVP-KDIGNLTKLMGLYLGRNRLQGEIPR----EFGNLAELEQMS  228 (244)
Q Consensus       177 ~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~  228 (244)
                      +.|++++|.+..... ..+..+++|++|++.+|+++ ..+.    .+..+++|+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            777777777653211 34566777777777777776 3332    356677777766

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=7.8e-15  Score=100.14  Aligned_cols=101  Identities=24%  Similarity=0.364  Sum_probs=46.7

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEccc
Q 048688           80 QSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSK  159 (244)
Q Consensus        80 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~  159 (244)
                      |+|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++ .+ ..+++|+++++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~-~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GV-ANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GG-TTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-cc-ccccccCeEECCC
Confidence            34555555554 322 2445555555555555554 33444445555555555555554 333 22 4445555555555


Q ss_pred             ccccccC-CccccCCCCCcEEeeccCcc
Q 048688          160 NMLHGGI-PSTLSNCTYLRILSLAYNDF  186 (244)
Q Consensus       160 ~~~~~~~-~~~l~~~~~L~~L~l~~n~~  186 (244)
                      |.+.... ...+..+++|+.|++++|++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            5444211 12334444444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.1e-14  Score=99.45  Aligned_cols=118  Identities=25%  Similarity=0.301  Sum_probs=82.9

Q ss_pred             cEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeecc
Q 048688          104 KDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAY  183 (244)
Q Consensus       104 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  183 (244)
                      |+|++++|.++ .++ .+..++.|++|++++|.++ .+|..+ ..+++|++|++++|.++ .+| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~-~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhh-hhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            56788888887 334 3677888888888888887 777665 67888888888888887 444 477788888888888


Q ss_pred             CcccccC-CccccCCCCCCEEEccCCccccc---CCccccCCCCCCEE
Q 048688          184 NDFSGAV-PKDIGNLTKLMGLYLGRNRLQGE---IPREFGNLAELEQM  227 (244)
Q Consensus       184 n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L  227 (244)
                      |.++... ...+..+++|+.|++++|++++.   .......+++|+.|
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8876432 24567778888888888887632   11223345666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-14  Score=109.58  Aligned_cols=179  Identities=17%  Similarity=0.087  Sum_probs=131.0

Q ss_pred             CCCceEEEEeCCCcceec-cCccCCCCCCCCEEeCC-CCCCCCCCCccccCCCCCcEEEecCCccCCCCCc-cccCCCCC
Q 048688           51 HSHKVTALNISGLNLTGT-IPSQLGNLSSLQSLDLS-FNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPS-FIFNKSSL  127 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~-~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L  127 (244)
                      .++++++|++++|.+... .+..|..++.++++.+. .+.+....+..+..+++|+++++.++.+....+. .+..+..+
T Consensus        51 ~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l  130 (242)
T d1xwdc1          51 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV  130 (242)
T ss_dssp             TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCE
T ss_pred             ccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccc
Confidence            467899999999987644 45678899999999986 4667666777889999999999999988743222 23345566


Q ss_pred             CEEEccCCCCCCcCChhhhCCC-CCCcEEEcccccccccCCccccCCCCCcEE-eeccCcccccCCccccCCCCCCEEEc
Q 048688          128 QHLDFSRNTLSGEIPANICSSL-PFLDYLYLSKNMLHGGIPSTLSNCTYLRIL-SLAYNDFSGAVPKDIGNLTKLMGLYL  205 (244)
Q Consensus       128 ~~L~l~~~~~~~~l~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~l  205 (244)
                      ..+...++.+. .++...+..+ ..+..+++.+|.++. ++.......+++.+ .+.+|.++...+..|.++++|+.|++
T Consensus       131 ~~~~~~n~~l~-~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         131 LLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI  208 (242)
T ss_dssp             EEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEEC
T ss_pred             ccccccccccc-cccccccccccccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEEC
Confidence            66666666776 6666554554 478899999999984 44444445555555 56777887555566889999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEEccC
Q 048688          206 GRNRLQGEIPREFGNLAELEQMSLAE  231 (244)
Q Consensus       206 ~~n~l~~~~~~~l~~l~~L~~L~l~~  231 (244)
                      ++|+++...+..+..+++|+.+++.+
T Consensus       209 s~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         209 SRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCcCCccCHHHHcCCcccccCcCCC
Confidence            99999855455677777777766644

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-15  Score=119.60  Aligned_cols=181  Identities=19%  Similarity=0.236  Sum_probs=129.3

Q ss_pred             CCceEEEEeCCCcceec-cCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCC-ccCCC-CCccccCCCCCC
Q 048688           52 SHKVTALNISGLNLTGT-IPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFREN-QLTGV-FPSFIFNKSSLQ  128 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~  128 (244)
                      ..++++|+++++.+... +...+..+++|++|+++++.+.+..+..+..+++|++|+++++ .++.. +...+..+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            45788999999877633 4556778899999999999887777778888999999999886 44421 122234678999


Q ss_pred             EEEccCCC-CCCc-CChhhhCCCCCCcEEEccccc--ccc-cCCccccCCCCCcEEeeccCc-ccccCCccccCCCCCCE
Q 048688          129 HLDFSRNT-LSGE-IPANICSSLPFLDYLYLSKNM--LHG-GIPSTLSNCTYLRILSLAYND-FSGAVPKDIGNLTKLMG  202 (244)
Q Consensus       129 ~L~l~~~~-~~~~-l~~~~~~~~~~L~~L~l~~~~--~~~-~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~  202 (244)
                      +|+++++. ++.. +...+....++|+.|+++++.  +++ .+...+..+++|++|++++|. +++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            99998864 3311 112222335678999988653  332 233334567889999998864 66666667778889999


Q ss_pred             EEccCC-cccccCCccccCCCCCCEEEccCC
Q 048688          203 LYLGRN-RLQGEIPREFGNLAELEQMSLAEN  232 (244)
Q Consensus       203 L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n  232 (244)
                      |++++| .+++.....++.+++|+.|++.++
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            999886 576666666788889999998877

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.5e-15  Score=114.08  Aligned_cols=189  Identities=19%  Similarity=0.188  Sum_probs=134.8

Q ss_pred             CCCceEEEEeCCCcceeccCccCCCCCCCCEEeCCCC-CCCCCC-CccccCCCCCcEEEecCCc-cCCC-CCcccc-CCC
Q 048688           51 HSHKVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFN-RLSGSI-PSAIFTTYTLKDVSFRENQ-LTGV-FPSFIF-NKS  125 (244)
Q Consensus        51 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~-~~~l~~l~~L~~L~l~~~~-l~~~-~~~~~~-~l~  125 (244)
                      +.+++++|++.++.+.......++.+++|++|+++++ .+++.. ......+++|++|+++++. ++.. ....+. ..+
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~  148 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  148 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence            5688999999999988777778889999999999986 454322 2223568999999999864 3321 112222 357


Q ss_pred             CCCEEEccCCC--CCCcCChhhhCCCCCCcEEEcccc-cccccCCccccCCCCCcEEeeccC-cccccCCccccCCCCCC
Q 048688          126 SLQHLDFSRNT--LSGEIPANICSSLPFLDYLYLSKN-MLHGGIPSTLSNCTYLRILSLAYN-DFSGAVPKDIGNLTKLM  201 (244)
Q Consensus       126 ~L~~L~l~~~~--~~~~l~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~  201 (244)
                      .|+.|+++++.  ++......+...+++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            89999998763  332222334456889999999986 466666677888999999999996 57666666788899999


Q ss_pred             EEEccCCccccc-CCccccCCCCCCEEEccCCccCcccCCCCC
Q 048688          202 GLYLGRNRLQGE-IPREFGNLAELEQMSLAENNLQALLLYSFM  243 (244)
Q Consensus       202 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  243 (244)
                      .|++.++ +++. +......+++|   .+..+.++.+.++.++
T Consensus       229 ~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~  267 (284)
T d2astb2         229 TLQVFGI-VPDGTLQLLKEALPHL---QINCSHFTTIARPTIG  267 (284)
T ss_dssp             EEECTTS-SCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCS
T ss_pred             EEeeeCC-CCHHHHHHHHHhCccc---cccCccCCCCCCCccC
Confidence            9999988 4432 22222345554   4577888887766654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=1.3e-15  Score=112.68  Aligned_cols=131  Identities=20%  Similarity=0.296  Sum_probs=68.8

Q ss_pred             CCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCcccc
Q 048688           92 SIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLS  171 (244)
Q Consensus        92 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  171 (244)
                      .++.++..+++|++|++++|.++.. + .+..+++|++|++++|.+. .++... ..+++|++|++++|.++. + ..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~-~~~~~L~~L~l~~N~i~~-l-~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIAS-L-SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHH-HHHHHCCEEECSEEECCC-H-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccc-cccccccccccccccccc-c-cccc
Confidence            3444555555666666666555532 2 2455556666666666554 444322 233456666666665552 2 2244


Q ss_pred             CCCCCcEEeeccCcccccCC-ccccCCCCCCEEEccCCcccccCCcc----------ccCCCCCCEEE
Q 048688          172 NCTYLRILSLAYNDFSGAVP-KDIGNLTKLMGLYLGRNRLQGEIPRE----------FGNLAELEQMS  228 (244)
Q Consensus       172 ~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~----------l~~l~~L~~L~  228 (244)
                      .+++|+.|++++|.++.... ..+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            55566666666666542211 24556666666666666654322211          34566777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.3e-13  Score=93.29  Aligned_cols=102  Identities=21%  Similarity=0.152  Sum_probs=61.4

Q ss_pred             EEeCCCcceeccCccCCCCCCCCEEeCCCC-CCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC
Q 048688           58 LNISGLNLTGTIPSQLGNLSSLQSLDLSFN-RLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT  136 (244)
Q Consensus        58 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  136 (244)
                      ++.+++++. ..|..+..+++|++|++.++ .+....+.+|..+++|+.|++++|.++.+.+..|..+++|++|+|++|.
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            455555554 34555666667777777544 3553344456666666666666666665555666666666666666666


Q ss_pred             CCCcCChhhhCCCCCCcEEEcccccc
Q 048688          137 LSGEIPANICSSLPFLDYLYLSKNML  162 (244)
Q Consensus       137 ~~~~l~~~~~~~~~~L~~L~l~~~~~  162 (244)
                      ++ .++...+..+ +|++|++++|.+
T Consensus        92 l~-~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          92 LE-SLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             CS-CCCSTTTCSC-CCCEEECCSSCC
T ss_pred             Cc-ccChhhhccc-cccccccCCCcc
Confidence            65 6666554333 466666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-12  Score=91.57  Aligned_cols=141  Identities=17%  Similarity=0.073  Sum_probs=97.5

Q ss_pred             CCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCC-CCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCc
Q 048688           99 TTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNT-LSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLR  177 (244)
Q Consensus        99 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  177 (244)
                      .+.....++.+++.+. ..|..+..+++|++|++.++. ++ .++...|..+++|+.|++++|.++...+..|..+++|+
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            3444566788877776 456677788899999997664 76 78877778899999999999999866677889999999


Q ss_pred             EEeeccCcccccCCccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEEccCCccCcccCCCC
Q 048688          178 ILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGE-IPREFGNLAELEQMSLAENNLQALLLYSF  242 (244)
Q Consensus       178 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  242 (244)
                      +|+|++|.++...+..+ ....|++|+|++|++.-. ....+..+.......+..+++++..|..+
T Consensus        84 ~L~Ls~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l  148 (156)
T d2ifga3          84 RLNLSFNALESLSWKTV-QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPL  148 (156)
T ss_dssp             EEECCSSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCS
T ss_pred             ceeccCCCCcccChhhh-ccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHH
Confidence            99999999884444444 445799999999987511 01112111112233344556666655543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=2.9e-14  Score=105.32  Aligned_cols=118  Identities=24%  Similarity=0.338  Sum_probs=97.4

Q ss_pred             CCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEEcccccccccCCccccCCCCCcEEeeccCcccccCCcccc
Q 048688          116 VFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLYLSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIG  195 (244)
Q Consensus       116 ~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  195 (244)
                      ..+..+..+++|++|++++|.+. .++ .+ ..+++|++|++++|.++ .++.....+++|+.|++++|.++. + +.+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l-~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SL-SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CH-HHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cc-cCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccc
Confidence            44567888999999999999998 775 45 77899999999999998 566655566789999999999874 3 3477


Q ss_pred             CCCCCCEEEccCCcccccCC--ccccCCCCCCEEEccCCccCcccCC
Q 048688          196 NLTKLMGLYLGRNRLQGEIP--REFGNLAELEQMSLAENNLQALLLY  240 (244)
Q Consensus       196 ~~~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~  240 (244)
                      .+++|+.|++++|.+++ ++  ..+..+++|+.|++++|++....+.
T Consensus       113 ~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             ccccccccccccchhcc-ccccccccCCCccceeecCCCccccCccc
Confidence            88999999999999984 33  4688999999999999998776543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.24  E-value=2e-13  Score=109.24  Aligned_cols=184  Identities=18%  Similarity=0.148  Sum_probs=105.7

Q ss_pred             CceEEEEeCCCcceec----cCccCCCCCCCCEEeCCCCCCCCCCCccc-------------cCCCCCcEEEecCCccCC
Q 048688           53 HKVTALNISGLNLTGT----IPSQLGNLSSLQSLDLSFNRLSGSIPSAI-------------FTTYTLKDVSFRENQLTG  115 (244)
Q Consensus        53 ~~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-------------~~l~~L~~L~l~~~~l~~  115 (244)
                      ++++.|++++|.+...    +...+...++|++|++++|.+.......+             ...+.|+.+.++++.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            4566666666655422    22233345566666666665431111010             234556666666665542


Q ss_pred             C----CCccccCCCCCCEEEccCCCCCCcC----ChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeecc
Q 048688          116 V----FPSFIFNKSSLQHLDFSRNTLSGEI----PANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAY  183 (244)
Q Consensus       116 ~----~~~~~~~l~~L~~L~l~~~~~~~~l----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~  183 (244)
                      .    +...+...+.|+.|++++|.+...-    ....+...++|++|++++|.+...    +...+..+++|++|++++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            2    1122345677888888888775211    111224567788888888876532    344566778888888888


Q ss_pred             CcccccCCc----ccc--CCCCCCEEEccCCccccc----CCcccc-CCCCCCEEEccCCccCc
Q 048688          184 NDFSGAVPK----DIG--NLTKLMGLYLGRNRLQGE----IPREFG-NLAELEQMSLAENNLQA  236 (244)
Q Consensus       184 n~~~~~~~~----~~~--~~~~L~~L~l~~n~l~~~----~~~~l~-~l~~L~~L~l~~n~l~~  236 (244)
                      |.+.+....    .+.  ....|++|++++|.+++.    +...+. .++.|+.|++++|.+..
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            887643221    222  235688888888887642    233332 46778888888888754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.20  E-value=9.8e-10  Score=87.04  Aligned_cols=95  Identities=26%  Similarity=0.454  Sum_probs=70.5

Q ss_pred             ceEEEEeCCCcceeccCccCCCCCCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEcc
Q 048688           54 KVTALNISGLNLTGTIPSQLGNLSSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFS  133 (244)
Q Consensus        54 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~  133 (244)
                      ++++|++++++++ .+|+.   .++|++|++++|.++ .+|..   +.+|+.|++.+|.++. ++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhhh---cccccccccc
Confidence            5678899998887 56653   467889999998887 66754   4578888888888773 2321   2468899999


Q ss_pred             CCCCCCcCChhhhCCCCCCcEEEccccccc
Q 048688          134 RNTLSGEIPANICSSLPFLDYLYLSKNMLH  163 (244)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~  163 (244)
                      +|.+. .+|. . ..+++|+++++.++.+.
T Consensus       107 ~n~l~-~lp~-~-~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         107 NNQLE-KLPE-L-QNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SSCCS-SCCC-C-TTCTTCCEEECCSSCCS
T ss_pred             ccccc-cccc-h-hhhccceeecccccccc
Confidence            88887 7764 3 56888888988887665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.19  E-value=2.6e-12  Score=102.63  Aligned_cols=185  Identities=17%  Similarity=0.191  Sum_probs=115.0

Q ss_pred             CCceEEEEeCCCccee----------ccCccCCCCCCCCEEeCCCCCCCCC----CCccccCCCCCcEEEecCCccCCCC
Q 048688           52 SHKVTALNISGLNLTG----------TIPSQLGNLSSLQSLDLSFNRLSGS----IPSAIFTTYTLKDVSFRENQLTGVF  117 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~----------~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~~~l~~~~  117 (244)
                      .++++.++++++....          .+...+..+++|++|++++|.+...    +...+..+++|++|++++|.+....
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~  137 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  137 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence            4567777776554321          1223345567777777777776643    2233345677777777777653210


Q ss_pred             Cc-------------cccCCCCCCEEEccCCCCCCcCChh---hhCCCCCCcEEEccccccccc-----CCccccCCCCC
Q 048688          118 PS-------------FIFNKSSLQHLDFSRNTLSGEIPAN---ICSSLPFLDYLYLSKNMLHGG-----IPSTLSNCTYL  176 (244)
Q Consensus       118 ~~-------------~~~~l~~L~~L~l~~~~~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L  176 (244)
                      ..             .....+.|+.+.+++|.+.......   .+...+.+++|+++.|.+...     +...+..+++|
T Consensus       138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L  217 (344)
T d2ca6a1         138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  217 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhh
Confidence            00             0124567777877777665221111   124567889999988887531     33456678889


Q ss_pred             cEEeeccCccccc----CCccccCCCCCCEEEccCCccccc----CCccccC--CCCCCEEEccCCccCc
Q 048688          177 RILSLAYNDFSGA----VPKDIGNLTKLMGLYLGRNRLQGE----IPREFGN--LAELEQMSLAENNLQA  236 (244)
Q Consensus       177 ~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~--l~~L~~L~l~~n~l~~  236 (244)
                      +.|++++|.++..    +...+..+++|++|++++|.+++.    +...+..  .+.|++|++++|+++.
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            9999999887532    334566788899999999988753    2233332  4678999999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.10  E-value=3.5e-09  Score=83.78  Aligned_cols=140  Identities=29%  Similarity=0.428  Sum_probs=105.8

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCcEEEecCCccCCCCCccccCCCCCCEEEccCCCCCCcCChhhhCCCCCCcEEE
Q 048688           77 SSLQSLDLSFNRLSGSIPSAIFTTYTLKDVSFRENQLTGVFPSFIFNKSSLQHLDFSRNTLSGEIPANICSSLPFLDYLY  156 (244)
Q Consensus        77 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~L~~L~  156 (244)
                      .++++|+++++.++ .+|+.   .++|++|++++|.++ .+|..   ..+|+.|++.+|.++ .++. +   .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l---p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L---PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C---CTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h---cccccccc
Confidence            36899999999997 67753   578999999999998 55654   468999999999987 6653 2   35799999


Q ss_pred             cccccccccCCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccCc
Q 048688          157 LSKNMLHGGIPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIPREFGNLAELEQMSLAENNLQA  236 (244)
Q Consensus       157 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  236 (244)
                      +++|.+. .+|. ++.+++|+.|++.++.+.. .+.   ....+..+.+..+...  ....+..++.++.+++++|.+..
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccc-cccc-hhhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            9999998 5664 5788999999999998763 332   2355667777665544  23446677778888888887665


Q ss_pred             c
Q 048688          237 L  237 (244)
Q Consensus       237 ~  237 (244)
                      .
T Consensus       177 ~  177 (353)
T d1jl5a_         177 L  177 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.2e-10  Score=91.66  Aligned_cols=186  Identities=20%  Similarity=0.150  Sum_probs=122.0

Q ss_pred             CCceEEEEeCCCccee-----ccCccCCCCCCCCEEeCCCCCCCCC----CCccccCCCCCcEEEecCCccCCCCCcc--
Q 048688           52 SHKVTALNISGLNLTG-----TIPSQLGNLSSLQSLDLSFNRLSGS----IPSAIFTTYTLKDVSFRENQLTGVFPSF--  120 (244)
Q Consensus        52 ~~~l~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~--  120 (244)
                      ...++.+++..+.+..     .....+.....++.+++++|.+...    ....+...+.++.+++++|.+.......  
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3456677777775431     2344455667899999998877522    2233456788999999888775321111  


Q ss_pred             ---ccCCCCCCEEEccCCCCCCcCChh---hhCCCCCCcEEEccccccccc----CCcccc-CCCCCcEEeeccCccccc
Q 048688          121 ---IFNKSSLQHLDFSRNTLSGEIPAN---ICSSLPFLDYLYLSKNMLHGG----IPSTLS-NCTYLRILSLAYNDFSGA  189 (244)
Q Consensus       121 ---~~~l~~L~~L~l~~~~~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~----~~~~l~-~~~~L~~L~l~~n~~~~~  189 (244)
                         ......|+.++++++.+.......   .+...++|++|++++|.+.+.    ++..+. ..+.|++|++++|.++..
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence               123467999999998876332221   224566899999999988642    333333 456799999999988642


Q ss_pred             ----CCccccCCCCCCEEEccCCcccccCC----cccc-CCCCCCEEEccCCccCcc
Q 048688          190 ----VPKDIGNLTKLMGLYLGRNRLQGEIP----REFG-NLAELEQMSLAENNLQAL  237 (244)
Q Consensus       190 ----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~-~l~~L~~L~l~~n~l~~~  237 (244)
                          +...+..+++|++|++++|.+++...    ..+. ....|+.|++.+|.+...
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence                33445667899999999999875322    2233 234689999999987653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.8e-09  Score=87.22  Aligned_cols=110  Identities=20%  Similarity=0.231  Sum_probs=71.6

Q ss_pred             CCcEEEecCCccCCCC-CccccCCCCCCEEEccCCCCCC----cCChhhhCCCCCCcEEEccccccccc----CCccccC
Q 048688          102 TLKDVSFRENQLTGVF-PSFIFNKSSLQHLDFSRNTLSG----EIPANICSSLPFLDYLYLSKNMLHGG----IPSTLSN  172 (244)
Q Consensus       102 ~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~  172 (244)
                      +|++|+++++.+++.. ...+..+++++.|+|.+|.++.    .+...+ ...++|++|++++|.++..    +...+..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L-~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHH-hcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            5788888888887432 2334557888888888887762    122223 5677888888888877531    2222322


Q ss_pred             -CCCCcEEeeccCccccc----CCccccCCCCCCEEEccCCcccc
Q 048688          173 -CTYLRILSLAYNDFSGA----VPKDIGNLTKLMGLYLGRNRLQG  212 (244)
Q Consensus       173 -~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~  212 (244)
                       ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.+
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence             34688888888877542    23445667788888888887764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5.3e-09  Score=73.95  Aligned_cols=15  Identities=47%  Similarity=0.472  Sum_probs=6.2

Q ss_pred             CCCCcEEEccccccc
Q 048688          149 LPFLDYLYLSKNMLH  163 (244)
Q Consensus       149 ~~~L~~L~l~~~~~~  163 (244)
                      +++|+.|++++|.++
T Consensus        90 l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          90 APNLKILNLSGNELK  104 (162)
T ss_dssp             STTCCCCCCTTSCCC
T ss_pred             CCcccccccccCccc
Confidence            334444444444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.5e-08  Score=71.59  Aligned_cols=82  Identities=26%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             CCCCCCcEEEccccccccc--CCccccCCCCCcEEeeccCcccccCCccccCCCCCCEEEccCCcccccCC-------cc
Q 048688          147 SSLPFLDYLYLSKNMLHGG--IPSTLSNCTYLRILSLAYNDFSGAVPKDIGNLTKLMGLYLGRNRLQGEIP-------RE  217 (244)
Q Consensus       147 ~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~  217 (244)
                      ..++.|++|++++|.++..  ++..+..+++|+.|++++|.++...+-.......|+.+++.+|++.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4456666666766666532  22345566777777777777764322222334457777777777764322       12


Q ss_pred             ccCCCCCCEEE
Q 048688          218 FGNLAELEQMS  228 (244)
Q Consensus       218 l~~l~~L~~L~  228 (244)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45667777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=1.6e-06  Score=61.05  Aligned_cols=15  Identities=7%  Similarity=0.417  Sum_probs=7.6

Q ss_pred             CCCCCCEEEccCCCC
Q 048688          123 NKSSLQHLDFSRNTL  137 (244)
Q Consensus       123 ~l~~L~~L~l~~~~~  137 (244)
                      ..+.|++|++++|.+
T Consensus        42 ~n~~L~~L~Ls~n~l   56 (167)
T d1pgva_          42 NSKHIEKFSLANTAI   56 (167)
T ss_dssp             TCSCCCEEECTTSCC
T ss_pred             hCCccceeecccccc
Confidence            444555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=1.2e-05  Score=56.38  Aligned_cols=112  Identities=9%  Similarity=0.152  Sum_probs=79.7

Q ss_pred             cCCCCCCEEEccCC-CCCCc----CChhhhCCCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCccccc---
Q 048688          122 FNKSSLQHLDFSRN-TLSGE----IPANICSSLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGA---  189 (244)
Q Consensus       122 ~~l~~L~~L~l~~~-~~~~~----l~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~---  189 (244)
                      .+.++|++|+|+++ .+...    +...+ ...++|++|++++|.+...    +...+...+.|+.|++++|.+...   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L-~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHH-hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            35688999999874 45422    22223 5678899999999988642    334455678999999999998642   


Q ss_pred             -CCccccCCCCCCEEEccCCcccc-------cCCccccCCCCCCEEEccCCcc
Q 048688          190 -VPKDIGNLTKLMGLYLGRNRLQG-------EIPREFGNLAELEQMSLAENNL  234 (244)
Q Consensus       190 -~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~l~~l~~L~~L~l~~n~l  234 (244)
                       +-..+...+.|++|++.+|.+..       .+...+...+.|+.|+++.+..
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence             22356677899999999886542       2445566788999999987643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.43  E-value=1.1e-05  Score=56.54  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=38.2

Q ss_pred             CCCCCcEEEccccccccc----CCccccCCCCCcEEeeccCccccc----CCccccCCCCCCEEEcc--CCcccc----c
Q 048688          148 SLPFLDYLYLSKNMLHGG----IPSTLSNCTYLRILSLAYNDFSGA----VPKDIGNLTKLMGLYLG--RNRLQG----E  213 (244)
Q Consensus       148 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~--~n~l~~----~  213 (244)
                      ..++|++|++++|.+...    +...+...++++.+++++|.+...    +...+...++|+.++|.  +|.+.+    .
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            344455555555544321    112233344555555555544321    11333445555554442  334432    2


Q ss_pred             CCccccCCCCCCEEEccCCc
Q 048688          214 IPREFGNLAELEQMSLAENN  233 (244)
Q Consensus       214 ~~~~l~~l~~L~~L~l~~n~  233 (244)
                      +...+...+.|+.|+++.+.
T Consensus       124 La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeCcCCC
Confidence            33344455666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=7.6e-05  Score=52.04  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=29.0

Q ss_pred             CCCCcEEEcccccccc----cCCccccCCCCCcEEeec--cCcccc----cCCccccCCCCCCEEEccCCc
Q 048688          149 LPFLDYLYLSKNMLHG----GIPSTLSNCTYLRILSLA--YNDFSG----AVPKDIGNLTKLMGLYLGRNR  209 (244)
Q Consensus       149 ~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~--~n~~~~----~~~~~~~~~~~L~~L~l~~n~  209 (244)
                      .+.++.+++.++.+..    .+...+...++|+.+.+.  .|.+..    .+...+...+.|++|++..+.
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            4455555555554432    122334445556554443  334422    122334456667777766554