Citrus Sinensis ID: 048723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAKKKAREEAKAEKEEDKHAKQNVKDDGTSDIGVKQNGFVNKAGGGGEYLILNANGEMGN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHccccccccccEEEccccccccHHHHHccccccHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccEEEccccccccEHHHHHHHHccccccccEEEEEEcccHHcccHHHcccccccEEEEEccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEcccEccccccccEEEEEccccccc
Coil and Loop (DISEMBL)
METKKKEEIKKDLKKFSEGKEYCAKIGKAWKrgyllygppgtgkSTMIAAMANFLNYdlvgekgivfttnyvdkldpalirrgrmdkrieMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASadvaenlmpksdeedADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAKKKAREEAKAEKEEdkhakqnvkddgtsdigvkqngfvnkaggggeYLILNANGEMGN
Flexible Loop (DISEMBL)
metkkkeeikkdlkkfsegkeyCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFttnyvdkldpaliRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAKKKAREeakaekeedkhakqnvkddgtsdigvkqngfvnkaggggEYLILNANGEMGN
Low Complexity Region (SEG)
MetkkkeeikkdlkkFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVakeearknaeeeallkaeeakkkareeakaekeedkhakQNVKDDGTSDIGVKQNGFVNKAGGGGEYLILNANGEMGN
Disordered region (IsUnstruct)
*******************KEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAET****************************************************************************************GFVNKAGGGGEYLIL********
Disordered Region (DISOPRED)
***KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEA*****************************************************************GGGEYLILNA******
Disordered Region (DISEMBL)
**********KDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAK***********LLKA****************************GTSDIGVKQNGFVNKAGGGGEYLILNANGEMGN
Disordered Region (DISPRO)
*ETKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNA****************************************IGVKQNGFVNKAGGGGEYLILNANG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTSDIGVKQNGFVNKAGGGGEYLILNANGEMGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q7ZTL7	419	Mitochondrial chaperone B	N/A	no	0.241	0.136	0.440	1e-07
Q54DY9	458	Probable mitochondrial ch	no	no	0.177	0.091	0.520	1e-07
Q9P6Q3	449	Probable mitochondrial ch	yes	no	0.279	0.146	0.371	1e-07
Q7ZV60	420	Mitochondrial chaperone B	yes	no	0.216	0.121	0.423	4e-07
Q5E9H5	419	Mitochondrial chaperone B	yes	no	0.241	0.136	0.389	6e-07
P32839	456	Mitochondrial chaperone B	yes	no	0.245	0.127	0.389	1e-06
Q9CZP5	418	Mitochondrial chaperone B	yes	no	0.199	0.112	0.415	3e-06
Q9Y276	419	Mitochondrial chaperone B	yes	no	0.199	0.112	0.396	5e-06
Q54HY8	421	Probable mitochondrial ch	no	no	0.224	0.125	0.425	6e-06
Q58556	903	Cell division cycle prote	yes	no	0.508	0.132	0.296	7e-05

>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 1   METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
           +E    E+I +D+K F E  ++ +  G  ++RGYLLYGPPG GKS+ I A+A  L Y +
Sbjct: 193 LEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSI 251

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.
Xenopus laevis (taxid: 8355)

>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 33/48 (68%)

Query: 5   KKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMA 52
           K E I +D+KKF    ++    G  ++RGYLLYGPPGTGKS+ I A+A
Sbjct: 215 KSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALA 262

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 1   METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL- 59
           +E+  K+ I  D+  F    ++    G  ++RGYLLYGPPG+GK++ + A+A  L+YD+ 
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDIC 271

Query: 60  ---VGEKGIV 66
              + EKG+ 
Sbjct: 272 VLNLAEKGLT 281

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 1   METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
           +E+   E I  D+K+F    ++    G  ++RGYLLYGPPG GKS+ I A+A  L Y +
Sbjct: 193 LESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSI 251

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.

Danio rerio (taxid: 7955)

>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 1   METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
           +E    E I +D+++F +  ++    G  ++RGYLLYGPPG GKS+ I A+A  L + +
Sbjct: 193 LEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSI 251

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.

Bos taurus (taxid: 9913)

>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 40/59 (67%)

Query: 1   METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
           +++  KE I  D+  F +  ++ +  G  ++RGYLLYGPPG+GK++ I A+A  L+Y++
Sbjct: 230 LDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNI 288

Essential for the expression of the Rieske iron-sulfur protein.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 7   EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
           + I KD+++F +  ++    G  ++RGYLLYGPPG GKS+ I A+A  L + +
Sbjct: 199 DRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSI 251

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.

Mus musculus (taxid: 10090)

>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 35/53 (66%)

Query: 7   EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
           + I +D+++F +  ++    G  ++RGYLLYGPPG GKS+ I A+A  L + +
Sbjct: 199 DRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSI 251

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.

Homo sapiens (taxid: 9606)

>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum GN=bcs1la PE=3 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 6   KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL 59
           K ++ +D+K F   + +    G  ++RGYLLYG PG GKS++I A+A  LN D+
Sbjct: 196 KSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDI 249

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.

Dictyostelium discoideum (taxid: 44689)

>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 7   EEIKKDLKKFSE----GKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGE 62
           EE+K++L++  E     KE   KIG    +G LL+GPPGTGK+ +  A+AN    + +  
Sbjct: 458 EEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISV 517

Query: 63  KGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLA-KSYLDIESHAFFAEINSL 121
           KG    + +V + + A+    R  ++       F+    +A K   D+ S      +N L
Sbjct: 518 KGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQL 577

Query: 122 LAETN 126
           L E +
Sbjct: 578 LTELD 582

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
224104059	494	predicted protein [Populus trichocarpa]	0.601	0.287	0.627	8e-44
224077259	484	predicted protein [Populus trichocarpa]	0.588	0.287	0.640	2e-43
224075990	155	predicted protein [Populus trichocarpa]	0.580	0.883	0.614	9e-43
255552796	523	ATP binding protein, putative [Ricinus c	0.699	0.315	0.584	2e-42
224076142	483	predicted protein [Populus trichocarpa]	0.495	0.242	0.692	8e-42
296087739	850	unnamed protein product [Vitis vinifera]	0.593	0.164	0.475	2e-40
356529963	358	PREDICTED: probable mitochondrial chaper	0.622	0.410	0.525	2e-36
359488753	528	PREDICTED: ATP-dependent zinc metallopro	0.716	0.320	0.522	3e-36
225452601	526	PREDICTED: uncharacterized protein LOC10	0.495	0.222	0.631	9e-36
225452596	509	PREDICTED: uncharacterized protein LOC10	0.546	0.253	0.585	9e-36

>gi|224104059|ref|XP_002333987.1| predicted protein [Populus trichocarpa] gi|222839463|gb|EEE77800.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 111/145 (76%), Gaps = 3/145 (2%)

Query: 42  TGKSTMIAAMANFLNYDLV---GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA 98
           +G    ++ + NF++       GE+ IVFTTNYVDKLDPALIRRGRMDK IE+SYCCFEA
Sbjct: 343 SGSKVTLSGLLNFIDGLWSACGGERIIVFTTNYVDKLDPALIRRGRMDKHIELSYCCFEA 402

Query: 99  FMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKV 158
           F VLAK+YL++ESH  F +I+ LL ET M  ADVAENLMP SDEED + CLK LIE L+ 
Sbjct: 403 FKVLAKNYLELESHEMFGKIDELLGETKMTPADVAENLMPMSDEEDEEDCLKRLIEGLET 462

Query: 159 AKEEARKNAEEEALLKAEEAKKKAR 183
           AKEEARK  +EEA+ KAE+A K+A+
Sbjct: 463 AKEEARKKTKEEAVSKAEKADKEAK 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077259|ref|XP_002305194.1| predicted protein [Populus trichocarpa] gi|222848158|gb|EEE85705.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 107/142 (75%), Gaps = 3/142 (2%)

Query: 42  TGKSTMIAAMANFLNYDLV---GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA 98
           +G    ++ + NF++       GE+ IVFTTNYVDKLDPALIRRGRMDK IE+SYCCFEA
Sbjct: 343 SGSKVTLSGLLNFIDGLWSACGGERIIVFTTNYVDKLDPALIRRGRMDKHIELSYCCFEA 402

Query: 99  FMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKV 158
           F VLAK+YL++ESH  F +I  LL ET M  ADVAENLMP SDEED + CLK LIE L+ 
Sbjct: 403 FKVLAKNYLELESHEMFGKIEELLGETKMTPADVAENLMPMSDEEDEEDCLKRLIEGLET 462

Query: 159 AKEEARKNAEEEALLKAEEAKK 180
           AKEEARK  EEEA+ KAE+A K
Sbjct: 463 AKEEARKKTEEEAVSKAEKADK 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075990|ref|XP_002335838.1| predicted protein [Populus trichocarpa] gi|222835785|gb|EEE74220.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 86/140 (61%), Positives = 108/140 (77%), Gaps = 3/140 (2%)

Query: 41  GTGKSTMIAAMANFLN---YDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFE 97
           G+G    ++ + N ++       GE+ I+FTTNYVDKLDPALIRRGRMDK I MSYCCFE
Sbjct: 10  GSGSKVTLSGLLNVIDGIWSACGGERIIIFTTNYVDKLDPALIRRGRMDKHIVMSYCCFE 69

Query: 98  AFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
           AF VLAK+YLDIESH  F +I  L  ET M+ ADVA+NLMPKSDE+D ++CLK L+EAL+
Sbjct: 70  AFKVLAKNYLDIESHELFGKIEELFVETKMSPADVADNLMPKSDEQDEETCLKRLVEALE 129

Query: 158 VAKEEARKNAEEEALLKAEE 177
            +KEEARK +EEEA+LK ++
Sbjct: 130 ASKEEARKKSEEEAMLKTKD 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552796|ref|XP_002517441.1| ATP binding protein, putative [Ricinus communis] gi|223543452|gb|EEF44983.1| ATP binding protein, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 128/178 (71%), Gaps = 13/178 (7%)

Query: 43  GKSTMIAAMANFLNYDLV---GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAF 99
           G    ++ + NF++       GE+ IVFTTNYV+KLDPALIRRGRMDK IEMSYCCFEAF
Sbjct: 348 GSKVTLSGLLNFIDGIWSACGGERIIVFTTNYVEKLDPALIRRGRMDKHIEMSYCCFEAF 407

Query: 100 MVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVA 159
            VLAK+YLD+ESH  + +I+ LL ETNM  ADVAENLMPKSDEED D+CLKNLI AL+  
Sbjct: 408 KVLAKNYLDVESHELYGKISKLLEETNMTPADVAENLMPKSDEEDEDTCLKNLIAALEET 467

Query: 160 KEEARKNAEEEALLKAEEAKKKAREEAKAEKEEDKHAKQNVKDDGTSDIGVKQNGFVN 217
           KEE  +   EEA LKAE+   +A+E+ KA KE++   K NVK    SD  +K+NG  +
Sbjct: 468 KEEEARKKAEEAKLKAEQ---EAKEKEKASKEDE---KGNVK----SDKEIKENGITS 515

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076142|ref|XP_002304895.1| predicted protein [Populus trichocarpa] gi|222847859|gb|EEE85406.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 99/117 (84%)

Query: 61  GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINS 120
           GE+ I+FTTNYVDKLDPALIRRGRMDK I MSYCCFEAF VLAK+YLDIESH  F +I  
Sbjct: 361 GERIIIFTTNYVDKLDPALIRRGRMDKHIVMSYCCFEAFKVLAKNYLDIESHELFGKIEE 420

Query: 121 LLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEE 177
           L  E+ M+ ADVA++LMPKSDE+D ++CLK L+EAL+ +KEEARK +EEEA+LK ++
Sbjct: 421 LFVESKMSPADVADSLMPKSDEQDEETCLKRLVEALEASKEEARKKSEEEAMLKTKD 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087739|emb|CBI34995.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 115/206 (55%), Gaps = 66/206 (32%)

Query: 1   METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTM---IAAMANFLNY 57
           ME+KKKEEI  DL  F   K+Y +KIGKAWKRGYLL+GPPGTGKS+M   +A + N+  Y
Sbjct: 644 MESKKKEEIVNDLTIFRTRKDYYSKIGKAWKRGYLLHGPPGTGKSSMIAAMANLLNYDIY 703

Query: 58  -----------------------------------DLVGEKG------------------ 64
                                              DL G++G                  
Sbjct: 704 DLELTSVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQQGESKESKVTLSGLLNFIDG 763

Query: 65  ----------IVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAF 114
                     IVFTTN+V+KLDPALIRRGRMD+ IE+SYCCFEAF V AK+YLD++SH  
Sbjct: 764 LWSACGEERLIVFTTNHVEKLDPALIRRGRMDRHIELSYCCFEAFKVFAKNYLDLDSHHL 823

Query: 115 FAEINSLLAETNMASADVAENLMPKS 140
           FA I  LL ETNM   DVAENLMPKS
Sbjct: 824 FASIRRLLEETNMTPVDVAENLMPKS 849

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529963|ref|XP_003533555.1| PREDICTED: probable mitochondrial chaperone BCS1-B-like [Glycine max]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 111/158 (70%), Gaps = 11/158 (6%)

Query: 61  GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINS 120
           GE+ IVFTTNYVDKLDPAL+R GRMDK+IE+ YCCFEA  VLAK YLD++ H  F  +  
Sbjct: 211 GERIIVFTTNYVDKLDPALVRSGRMDKKIELPYCCFEALKVLAKIYLDVDHHGLFHAVEG 270

Query: 121 LLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAKK 180
           LL E+NM  ADVAE++MPKS  +D ++CLK LIE+L    E+A K  +EEA       KK
Sbjct: 271 LLEESNMTPADVAEDMMPKSKSDDVETCLKKLIESL----EKAMKKDQEEA------QKK 320

Query: 181 KAREEAKAEKEEDKHAKQNV-KDDGTSDIGVKQNGFVN 217
           +  EEA+ ++E+++ A++   K D  +   VK+NGFV+
Sbjct: 321 RDEEEARLKEEKEQFAQEEAKKSDEKAGKDVKENGFVH 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488753|ref|XP_002275823.2| PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Vitis vinifera]

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/178 (52%), Positives = 122/178 (68%), Gaps = 9/178 (5%)

Query: 48  IAAMANFLN--YDLVGE-KGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAK 104
           ++ + NF++  +   GE + IVFTTN+V+KLDPALIRRGRMDK IE+SYCCFEAF VLAK
Sbjct: 348 LSGLLNFIDGLWSACGEERLIVFTTNHVEKLDPALIRRGRMDKHIELSYCCFEAFKVLAK 407

Query: 105 SYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEED--ADSCLKNLIEALKVAKEE 162
           +YLD++SH  FA I  LL ETNM  ADVAENLMPKS   D    +CL+NLI+AL+ AKEE
Sbjct: 408 NYLDLDSHHLFASIRRLLEETNMTPADVAENLMPKSISTDDPGTACLENLIQALETAKEE 467

Query: 163 AR--KNAEEEALLKAEEAKKKAREEAKAEKEEDKHAKQNVKDDGTSDIGVKQNGFVNK 218
           AR     EEE      E + K +E    E +E + + + VK++G S   +++NG + K
Sbjct: 468 ARVKAEKEEEEERLKAEKEGKEKEATAGEVKEKETSGEEVKENGVS--ALRENGVIPK 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452601|ref|XP_002281222.1| PREDICTED: uncharacterized protein LOC100257701 [Vitis vinifera]

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 95/122 (77%), Gaps = 5/122 (4%)

Query: 48  IAAMANFLN--YDLVGE-KGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAK 104
           ++ + NF++  +   GE + IVFTTN+V+KLDPALIRRGRMD+ IE+SYCCFEAF VLAK
Sbjct: 346 LSGLLNFIDGLWSACGEERLIVFTTNHVEKLDPALIRRGRMDRHIELSYCCFEAFKVLAK 405

Query: 105 SYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEED--ADSCLKNLIEALKVAKEE 162
           +YLD++SH  FA I  LL ETNM  ADVAENLMPKS   D    +CL+NLI+AL+ AKEE
Sbjct: 406 NYLDLDSHHLFASIRRLLEETNMTPADVAENLMPKSISTDDPGTACLENLIQALETAKEE 465

Query: 163 AR 164
           AR
Sbjct: 466 AR 467

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452596|ref|XP_002275800.1| PREDICTED: uncharacterized protein LOC100255946 [Vitis vinifera]

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 104/140 (74%), Gaps = 11/140 (7%)

Query: 61  GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINS 120
           GE+ I+FTTNYV KLDPALIRRGRMDK IE+SYC FEAF VLAK+YL+IESH FF  I S
Sbjct: 363 GERLIIFTTNYVKKLDPALIRRGRMDKHIELSYCSFEAFKVLAKNYLNIESHPFFETIGS 422

Query: 121 LLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAKK 180
           LL E +M  ADVAENLMPK+ + D+++CL++LI+AL+ AK+++  NA+EE  L+A     
Sbjct: 423 LLEEISMTPADVAENLMPKTIKGDSETCLESLIQALEAAKKDS-INAKEELKLRA----- 476

Query: 181 KAREEAKAEKEEDKHAKQNV 200
                AK  K E+  AK+ V
Sbjct: 477 -----AKDSKGEESSAKETV 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2098648	510	AT3G28540 [Arabidopsis thalian	0.411	0.190	0.731	6.1e-52
TAIR|locus:2098658	530	AT3G28510 [Arabidopsis thalian	0.411	0.183	0.711	7.4e-51
TAIR|locus:2095512	500	AT3G28580 [Arabidopsis thalian	0.411	0.194	0.686	3.4e-50
TAIR|locus:2095537	474	AT3G28610 [Arabidopsis thalian	0.466	0.232	0.584	1.4e-48
TAIR|locus:2098638	478	AT3G28520 [Arabidopsis thalian	0.406	0.200	0.666	1.6e-47
TAIR|locus:2095502	451	AT3G28570 [Arabidopsis thalian	0.449	0.235	0.530	9.5e-42
TAIR|locus:2115954	248	AT4G05380 [Arabidopsis thalian	0.453	0.431	0.407	4.9e-33
TAIR|locus:2175986	505	AT5G17760 [Arabidopsis thalian	0.453	0.211	0.427	1.7e-31
TAIR|locus:2095532	477	AT3G28600 [Arabidopsis thalian	0.508	0.251	0.555	2.2e-29
TAIR|locus:2175956	533	AT5G17740 [Arabidopsis thalian	0.394	0.174	0.425	3.2e-29

TAIR|locus:2098648 AT3G28540 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
 Identities = 71/97 (73%), Positives = 82/97 (84%)

Query:    61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINS 120
             GEK IVFTTNY+DKLDPALIRRGRMD  IEMSYC FEAF VLAK+YL+IESH  F EI  
Sbjct:   361 GEKIIVFTTNYLDKLDPALIRRGRMDNHIEMSYCRFEAFKVLAKNYLEIESHDLFGEIKR 420

Query:   121 LLAETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
             L+ ET+M+ ADVAENLMPKSDE+DAD CL  L+++L+
Sbjct:   421 LVEETDMSPADVAENLMPKSDEDDADICLTRLVKSLE 457

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2098658 AT3G28510 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 7.4e-51, Sum P(2) = 7.4e-51
 Identities = 69/97 (71%), Positives = 80/97 (82%)

Query:    61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINS 120
             GEK IVFTTN+VDKLDPALIRRGRMD  IEMSYC FEAF VLAK+YL+IE+H  + EI  
Sbjct:   362 GEKIIVFTTNFVDKLDPALIRRGRMDNHIEMSYCKFEAFKVLAKNYLEIETHDLYGEIER 421

Query:   121 LLAETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
              L ET+M+ ADVAE LMPKSDEEDAD C+K L++ L+
Sbjct:   422 KLEETDMSPADVAETLMPKSDEEDADICIKRLVKTLE 458

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2095512 AT3G28580 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 3.4e-50, Sum P(2) = 3.4e-50
 Identities = 68/99 (68%), Positives = 78/99 (78%)

Query:    61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINS 120
             GE+ IVFTTN+VDKLDPALIR+GRMDK IEMSYCCFEAF VLAK+YLD+E    F EI  
Sbjct:   361 GERIIVFTTNFVDKLDPALIRKGRMDKHIEMSYCCFEAFKVLAKNYLDVEESEMFEEIKR 420

Query:   121 LLA--ETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
             LL   E  M  ADV ENL+PKS++E  ++CLK LIEALK
Sbjct:   421 LLEVEEIKMTPADVGENLLPKSEKEGGETCLKRLIEALK 459

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

TAIR|locus:2095537 AT3G28610 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
 Identities = 66/113 (58%), Positives = 87/113 (76%)

Query:    48 IAAMANFLN--YDLVG-EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAK 104
             ++ + NF++  +   G E+ IVFTTN++ KLDPALIRRGRMD  IE+SYC FEAF  LAK
Sbjct:   334 LSGLLNFIDGIWSACGQERIIVFTTNHLAKLDPALIRRGRMDMHIELSYCTFEAFKTLAK 393

Query:   105 SYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
             +YLD++SH  F++I SL+ ETN+A ADVAENLM K+ E DAD  L +LIE+L+
Sbjct:   394 NYLDLDSHPLFSKIESLMKETNIAPADVAENLMKKNRETDADGSLNDLIESLE 446

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2098638 AT3G28520 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 64/96 (66%), Positives = 78/96 (81%)

Query:    62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSL 121
             EK I+FTTN+VD LDPALIRRGRMD  IEMSYC FEAF VLAK+YL+ ESH  + EI  L
Sbjct:   347 EKIIIFTTNFVDNLDPALIRRGRMDYHIEMSYCRFEAFKVLAKNYLENESHDLYGEIGRL 406

Query:   122 LAETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
             L E +++ ADVAENLMPKSDE+DAD C + L+++L+
Sbjct:   407 LEEVDVSPADVAENLMPKSDEDDADICFRRLVKSLE 442

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2095502 AT3G28570 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 60/113 (53%), Positives = 79/113 (69%)

Query:    48 IAAMANFLN--YDLVGEKGI-VFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAK 104
             ++ + NF++  +   G++ I VFTTN+V KLD ALIRRGRMD  IE+SYC F AF +LAK
Sbjct:   325 LSGLLNFIDGIWSACGQERILVFTTNHVGKLDQALIRRGRMDMHIELSYCTFGAFKILAK 384

Query:   105 SYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
             +YL+I+SH  F EI SLL ET +  ADVAE++M K    + D  LK LI AL+
Sbjct:   385 NYLNIDSHHLFGEIESLLKETKITPADVAEHMMAK----EVDGSLKGLIRALE 433

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2115954 AT4G05380 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 46/113 (40%), Positives = 63/113 (55%)

Query:    48 IAAMANFLN---YDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAK 104
             ++ + NF++      V E+ I+FTTN+ +KLDPAL+R GRMD  I M YC    F  LA 
Sbjct:   126 LSGLLNFVDGLWSSCVEERIIIFTTNHKEKLDPALLRPGRMDVHILMDYCTPIVFKKLAA 185

Query:   105 SYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
              YL+IE H  F  I  +  E     A++ E LM     +D D  LK L+E L+
Sbjct:   186 LYLEIEEHELFDPIEKMFLEVKATPAEITEKLMVS---KDPDVTLKGLVEFLE 235

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2175986 AT5G17760 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 50/117 (42%), Positives = 69/117 (58%)

Query:    48 IAAMANFLN--YDLVG-EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAK 104
             ++ + NF++  +   G E+ I+FTTN+ D+LDPAL+R GRMD  I M +C F+ F  LA 
Sbjct:   341 LSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHIYMGHCSFQGFKTLAS 400

Query:   105 SYLDIES----HAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
             +YL +      H  F EI  L+    M  A VAE LM KS  EDAD  L+ L+  L+
Sbjct:   401 NYLGLSDAAMPHRLFPEIERLIDGEVMTPAQVAEELM-KS--EDADVALEGLVNVLE 454

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2095532 AT3G28600 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.2e-29, P = 2.2e-29
 Identities = 70/126 (55%), Positives = 93/126 (73%)

Query:    38 GPPGT--GKSTM-IAAMANFLN--YDLVG-EKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91
             G  GT   KS + ++ + NF++  +   G E+ I+FTTN+ +KLDPALIRRGRMD  IE+
Sbjct:   321 GEQGTEEDKSFVTLSGLLNFIDGIWSACGQERIIIFTTNHFEKLDPALIRRGRMDMHIEL 380

Query:    92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKN 151
             SYC FEAF +LAK+YLD+++H  F +I SLL ET +A ADVAENLM K+ E DAD  LK+
Sbjct:   381 SYCSFEAFKILAKNYLDLDTHPLFKKIESLLKETKIAPADVAENLMKKNTEIDADGSLKD 440

Query:   152 LIEALK 157
             LI+AL+
Sbjct:   441 LIQALE 446

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2175956 AT5G17740 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 3.2e-29, Sum P(2) = 3.2e-29
 Identities = 43/101 (42%), Positives = 61/101 (60%)

Query:    62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI-----ESHAFFA 116
             E+ I+FTTN  +KLDPAL+R GRMD  I M +C F+ F  LA +YL +     ++H    
Sbjct:   353 ERIIIFTTNNKEKLDPALLRPGRMDMHIYMGHCSFQGFKTLASNYLGLSDENDDTHPLCP 412

Query:   117 EINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALK 157
             +I  L+    +  A VAE LM    +EDAD+ L+ L++ LK
Sbjct:   413 DIKHLIDGHVLTPAQVAEELMK---DEDADAALEGLVKVLK 450

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	1e-05
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	1e-05
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	2e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-04
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	2e-04
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	3e-04
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	4e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-04
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	6e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	7e-04
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	8e-04
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	8e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.001
pfam13521	162	pfam13521, AAA_28, AAA domain	0.001
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	0.002
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	0.002
pfam13086	220	pfam13086, AAA_11, AAA domain	0.002
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	0.003
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.003
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	0.004
pfam13555	60	pfam13555, AAA_29, P-loop containing region of AAA	0.004

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 34 YLLYGPPGTGKSTMIAAMANFLNYDLV 60
           LLYGPPGTGK+T+  A+A  L    +
Sbjct: 1  LLLYGPPGTGKTTLAKAVAKELGAPFI 27

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 31 KRGYLLYGPPGTGKSTMIAAMANFL---NYDLVGEKGIVFTTNYVDKLDPALIRRGRMDK 87
           +  LLYGPPGTGK+T+  A+AN L       +           V            + +
Sbjct: 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78

Query: 88 RIEMS 92
            E +
Sbjct: 79 LAEKA 83

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 44  KSTMIAAMANFLNYDLVGEKGIVF-TTNYVDKLDPALIRRGRMDKRIEMSY 93
            + ++  +  F +      K IV   TN  DKLDPAL  RGR D+ IE   
Sbjct: 85  VNQLLTELDGFTS---SLSKVIVIAATNRPDKLDPAL-LRGRFDRIIEFPL 131

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 31 KRGYLLYGPPGTGKSTMIAAMANFLNYDLVG 61
              L+ GPPG+GK+T+  A+A  L     G
Sbjct: 2  GEVILIVGPPGSGKTTLARALARELGPPGGG 32

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 1   METKKKE--EIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
           +E  K+E  E+   LKK     E    +G    +G LL GPPGTGK+ +  A+A 
Sbjct: 188 IEEAKEEFEEVVSFLKK----PERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238

Length = 638

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 19/134 (14%)

Query: 46  TMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS 105
           TM+  +     +D  G+  ++  TN ++ LDPALIR GR+D++IE               
Sbjct: 306 TMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNP----------- 354

Query: 106 YLDIESHAFFAEINSLLAETNMAS-ADVAENLMPKSDEEDADSCLKNL-IEALKVAKEEA 163
             D ++     EI++  ++  +A   D+ E +M K +   AD  +K +  EA  +A  E 
Sbjct: 355 --DEKTKRRIFEIHT--SKMTLAEDVDLEEFIMAKDELSGAD--IKAICTEAGLLALRER 408

Query: 164 RKNAEEEALLKAEE 177
           R    +    KA+E
Sbjct: 409 RMKVTQADFRKAKE 422

Length = 438

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 5   KKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 53
           +K+EI++ ++      E   +IG    RG LLYGPPGTGK+ +  A+A+
Sbjct: 153 QKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201

Length = 398

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 15/59 (25%)

Query: 7  EEIKKDLKKFSEGKEYCAKIGKAWKRGY-----LLYGPPGTGKSTMIAAMANFLNYDLV 60
          E+ K+ L+++ E          +W +G      LLYGPPG GK+++  A+AN   ++++
Sbjct: 20 EKAKEQLREWIE----------SWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVI 68

Length = 482

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 46  TMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIE 90
           TM+  +     +D  G   ++  TN  D LDPAL+R GR D++IE
Sbjct: 274 TMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIE 318

Length = 406

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 25/45 (55%), Positives = 28/45 (62%)

Query: 154 EALKVAKEEARKNAEEEALLKAEEAKKKAREEAKAEKEEDKHAKQ 198
           EA K A+EEA+  A  EA  KA EAKKKA  EAKA+ E    AK 
Sbjct: 147 EAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKA 191

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 7   EEIKKDLKKFSE----GKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGE 62
           EE+K++L++  E      E   K+G    +G LL+GPPGTGK+ +  A+A     + +  
Sbjct: 459 EEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518

Query: 63  KG 64
           +G
Sbjct: 519 RG 520

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 46  TMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91
           T++  +A    +D  G   ++  TN  D LDPAL+R GR D+ IE+
Sbjct: 245 TLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEV 290

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 162 EARKNAEEEALLKAEEAKKKAREEAKAEKEEDKHAKQNVKDD 203
           +  K + E ALL  +E K   + E KAEK + K  K+  K +
Sbjct: 52  KDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKE 93

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|222194 pfam13521, AAA_28, AAA domain

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL-------DPALIRRGRMD 86
           ++ G P TGK+T++ A+A    Y +V E G  +    +          D        ++
Sbjct: 2  IVITGGPSTGKTTLLEALAA-RGYPVVPEYGREYIEEQLADGGDALPWADLLAFAELMLE 60

Query: 87 KRIE 90
           ++E
Sbjct: 61 AQLE 64

Length = 162

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 65  IVFTTNYVDKLDPALIRRGRMDKRIEMSY 93
           ++  TN  D LDPAL+R GR+D++IE   
Sbjct: 287 VIMATNRADTLDPALLRPGRLDRKIEFPL 315

Length = 398

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 15/23 (65%), Positives = 20/23 (86%), Gaps = 2/23 (8%)

Query: 32  RGYLLYGPPGTGKSTMIA-AMAN 53
           +G LLYGPPGTGK T++A A+A+
Sbjct: 166 KGVLLYGPPGTGK-TLLAKAVAH 187

Length = 389

>gnl|CDD|221912 pfam13086, AAA_11, AAA domain

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 29/155 (18%)

Query: 34  YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT-------NYVDKL-----DPALIR 81
            L+ GPPGTGK+T I  +   L  +  G+K ++          N +++L        ++R
Sbjct: 20  TLIQGPPGTGKTTTIVEIIKQLLSNAPGKK-VLVCAPSNSAVDNILERLLEQKFGLKIVR 78

Query: 82  RGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSD 141
            G   + I                  D+  ++    + +   +       +   L  KS 
Sbjct: 79  IGSPAREIH----------------EDVLQYSLEYLLEAKFEQLLKRIRKLKSLLEEKSK 122

Query: 142 EEDADSCLKNLIEALKVAKEEARKNAEEEALLKAE 176
            +     L++ I+ LK   E  RK+  +E L +A+
Sbjct: 123 LKRERRKLRSEIKKLKKELERLRKSIRKEILDEAD 157

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. Length = 220

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 6   KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLN 56
           KEE+K+ ++   +  E   K+G    +G LLYGPPGTGK+ +  A+A    
Sbjct: 251 KEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR 301

Length = 494

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 145 ADSCLKNLIEALKVAKEEARKNAEEEALLKAE-EAKKKAREEAKAEKEEDKHAK 197
           A++  K    A K A  EA+K AE EA  KA  EAKKKA  EA A+   +   K
Sbjct: 149 AEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202

Length = 387

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 37.4 bits (88), Expect = 0.004
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 35 LLYGPPGTGKSTMIAAMANFLNYDLV 60
          +L+GPPGTGK+T+   +A   +    
Sbjct: 40 ILWGPPGTGKTTLARIIAGATDAPFE 65

Length = 413

>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 32 RGYLLYGPPGTGKSTMIAAMANFL 55
          +G LL GP G+GKST+I A+   L
Sbjct: 22 KGTLLTGPSGSGKSTLIDAIQTLL 45

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	100.0
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.96
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.94
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.93
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.93
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.93
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.93
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.91
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.91
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.91
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.9
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	99.9
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.89
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	99.89
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.88
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.88
CHL00195	489	ycf46 Ycf46; Provisional	99.87
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.87
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.87
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.86
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.86
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	99.86
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.85
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.85
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.85
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	99.84
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.83
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.83
CHL00176	638	ftsH cell division protein; Validated	99.83
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.8
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.8
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.79
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.79
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.78
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	99.78
CHL00206	2281	ycf2 Ycf2; Provisional	99.77
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.73
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.71
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.7
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.69
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.68
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.56
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.46
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.45
PF00004	132	AAA: ATPase family associated with various cellula	99.35
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.28
CHL00181	287	cbbX CbbX; Provisional	99.19
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.18
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.18
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.15
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.13
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.11
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.11
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.07
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.07
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.06
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.05
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.03
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.99
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.99
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.97
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.96
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.95
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.93
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	98.92
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.87
PRK04195	482	replication factor C large subunit; Provisional	98.87
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.85
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.83
PRK06893	229	DNA replication initiation factor; Validated	98.83
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.83
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.82
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.82
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.81
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.8
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.8
PRK13342	413	recombination factor protein RarA; Reviewed	98.79
COG1123	539	ATPase components of various ABC-type transport sy	98.79
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	98.78
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.76
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.76
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.76
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.75
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.73
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.73
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.73
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.72
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.72
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.71
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.71
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.71
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.71
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.71
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.7
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.69
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.69
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.69
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.69
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.69
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.69
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.68
PHA02544	316	44 clamp loader, small subunit; Provisional	98.68
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.68
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.68
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.68
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.67
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.67
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.67
PRK06620	214	hypothetical protein; Validated	98.67
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.67
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.66
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.66
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.66
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.66
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.65
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.65
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.65
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.64
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.64
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.64
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.63
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.63
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.63
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.63
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.63
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.63
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.63
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.62
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.62
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.62
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.62
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.61
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.61
PHA02244	383	ATPase-like protein	98.61
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.61
PLN03025	319	replication factor C subunit; Provisional	98.6
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.59
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.59
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.59
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.59
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.59
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.58
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.58
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.58
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.58
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.58
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.58
PRK08084	235	DNA replication initiation factor; Provisional	98.58
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.58
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.58
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.57
PRK10908	222	cell division protein FtsE; Provisional	98.57
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.57
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.57
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.57
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.56
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.56
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.56
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.56
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.56
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.55
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.55
PRK13341	725	recombination factor protein RarA/unknown domain f	98.55
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.55
COG4181	228	Predicted ABC-type transport system involved in ly	98.55
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.55
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.55
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.55
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.55
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.54
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.54
COG4559	259	ABC-type hemin transport system, ATPase component	98.54
COG0714	329	MoxR-like ATPases [General function prediction onl	98.54
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.53
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.53
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.53
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.53
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.53
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
KOG2028	554	consensus ATPase related to the helicase subunit o	98.53
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.53
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.52
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.52
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.52
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.52
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.52
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.52
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.52
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.52
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.52
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.51
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.51
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.51
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.51
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.51
PRK09087	226	hypothetical protein; Validated	98.51
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.5
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.5
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.5
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.5
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.5
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.5
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.49
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.49
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.49
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.49
PRK08118	167	topology modulation protein; Reviewed	98.49
PRK10865	857	protein disaggregation chaperone; Provisional	98.49
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.49
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.48
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.48
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.48
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.48
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.48
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.47
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.47
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.47
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.47
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.46
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.46
PRK08727	233	hypothetical protein; Validated	98.46
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.46
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.46
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.46
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.46
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.46
cd03246	173	ABCC_Protease_Secretion This family represents the	98.46
PRK12422	445	chromosomal replication initiation protein; Provis	98.46
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.46
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.45
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.45
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.45
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.45
PF07726	131	AAA_3: ATPase family associated with various cellu	98.45
PRK07261	171	topology modulation protein; Provisional	98.44
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.44
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.44
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.44
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.44
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	98.43
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.43
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.43
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.43
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.43
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.43
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.43
COG4172	534	ABC-type uncharacterized transport system, duplica	98.43
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.43
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.42
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.42
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.42
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.42
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.42
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.42
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.42
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.42
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.42
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.42
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.42
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.42
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.41
COG0488	530	Uup ATPase components of ABC transporters with dup	98.41
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.4
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.4
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.4
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.4
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.4
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.4
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.4
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.4
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.4
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.39
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	98.39
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.39
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.38
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.38
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.38
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.38
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.38
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.38
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.37
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.37
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.37
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.37
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.37
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.37
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.36
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.36
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.36
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.35
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.35
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.35
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.35
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.35
PRK12402	337	replication factor C small subunit 2; Reviewed	98.35
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.35
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.34
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.34
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.34
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.34
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.34
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.34
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.34
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.33
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.33
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.33
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.33
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.33
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.33
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.33
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.33
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.33
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.32
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.32
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.32
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.32
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.32
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.31
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.31
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	98.31
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.31
PRK05642	234	DNA replication initiation factor; Validated	98.31
CHL00095	821	clpC Clp protease ATP binding subunit	98.31
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.3
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.3
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.3
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.3
PRK11147	635	ABC transporter ATPase component; Reviewed	98.3
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.29
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.29
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.29
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.29
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.28
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.28
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.27
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.27
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.27
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.26
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.26
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.26
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.26
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.25
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.25
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.25
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.25
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.25
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.25
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.24
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.24
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.24
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.24
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.24
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.23
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.23
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.22
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.22
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.22
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.22
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.22
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.21
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.21
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.21
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.21
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.21
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.21
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.2
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.2
PRK13949	169	shikimate kinase; Provisional	98.2
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.2
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.2
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.19
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.19
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.19
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.19
PRK13765	637	ATP-dependent protease Lon; Provisional	98.19
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.19
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.19
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.18
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.18
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.18
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.17
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.17
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.17
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.17
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.17
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.17
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.17
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.17
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.17
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.17
PRK13531	498	regulatory ATPase RavA; Provisional	98.16
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.16
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.16
PRK10938	490	putative molybdenum transport ATP-binding protein	98.16
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.16
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.16
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.15
PRK09862	506	putative ATP-dependent protease; Provisional	98.15
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.15
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.15
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.14
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.14
smart00382	148	AAA ATPases associated with a variety of cellular	98.14
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.14
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.14
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.14
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	98.14
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.13
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.12
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.12
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.12
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.12
PRK10865	857	protein disaggregation chaperone; Provisional	98.12
COG4988	559	CydD ABC-type transport system involved in cytochr	98.12
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.12
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.12
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.12
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.11
smart00350	509	MCM minichromosome maintenance proteins.	98.11
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.11
CHL00095	821	clpC Clp protease ATP binding subunit	98.11
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.1
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.1
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.1
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.1
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	98.09
PLN03073	718	ABC transporter F family; Provisional	98.09
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.09
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.09
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.09
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.08
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.08
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.07
COG4987	573	CydC ABC-type transport system involved in cytochr	98.07
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.07
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.06
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.06
COG1123	539	ATPase components of various ABC-type transport sy	98.06
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.05
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.05
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.05
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.05
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.05
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.04
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.04
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.04
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.04
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.04
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.04
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.04
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.04
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.03
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.03
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.03
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.03
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	98.03
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.02
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.02
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.02
COG0488	530	Uup ATPase components of ABC transporters with dup	98.02
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.01
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.01
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	97.99
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.99
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	97.99
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.98
COG4172	534	ABC-type uncharacterized transport system, duplica	97.98
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.97
PRK06217	183	hypothetical protein; Validated	97.97
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.97
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.96
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.96
PRK10938	490	putative molybdenum transport ATP-binding protein	97.96
PRK00131	175	aroK shikimate kinase; Reviewed	97.95
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.95
PLN03232	1495	ABC transporter C family member; Provisional	97.95
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.94
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.94
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.94
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.94
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.93
PLN03130	1622	ABC transporter C family member; Provisional	97.93
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.93
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	97.92
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	97.91
KOG0062	582	consensus ATPase component of ABC transporters wit	97.91
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	97.9
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.89
PRK13409	590	putative ATPase RIL; Provisional	97.89
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.88
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.88
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	97.88
PRK11147	635	ABC transporter ATPase component; Reviewed	97.88
PTZ00112	1164	origin recognition complex 1 protein; Provisional	97.87
PRK07471	365	DNA polymerase III subunit delta'; Validated	97.87

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.9e-36  Score=270.43  Aligned_cols=167  Identities=57%  Similarity=0.940  Sum_probs=154.6

Q ss_pred             CChHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc---------------------
Q 048723            1 METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------   59 (236)
Q Consensus         1 ~~~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------   59 (236)
                      |+++.|++|++++..|.+++++|.++|.+|+|||||||||||||||++.|||+.|++++                     
T Consensus       205 Md~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t  284 (457)
T KOG0743|consen  205 MDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLAT  284 (457)
T ss_pred             cChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhC
Confidence            89999999999999999999999999999999999999999999999999999999998                     


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .++++||+|||+++.|||||+||||||++
T Consensus       285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh  364 (457)
T KOG0743|consen  285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH  364 (457)
T ss_pred             CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence                                                               22799999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccc-hhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIES-HAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNA  167 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~-~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  167 (236)
                      |++++|++++++.+++.|++... +.++.++..+.....+|||||++.++....  ++..|++.+++.|+.++.+..+..
T Consensus       365 I~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~--dad~~lk~Lv~~l~~~~~~~~~~~  442 (457)
T KOG0743|consen  365 IYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKN--DADVALKGLVEALESKKEKRNKDD  442 (457)
T ss_pred             EEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhccc--cHHHHHHHHHHHHHhhhhhhccch
Confidence            99999999999999999999874 889999999999999999999999997322  899999999999999887665544


Q ss_pred             HH
Q 048723          168 EE  169 (236)
Q Consensus       168 ~~  169 (236)
                      .+
T Consensus       443 ~~  444 (457)
T KOG0743|consen  443 KE  444 (457)
T ss_pred             hh
Confidence            44

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-32  Score=241.06  Aligned_cols=157  Identities=27%  Similarity=0.369  Sum_probs=140.4

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++.++|.+.+..++.+|++|..+|+.+|+|+|||||||||||+||||+|+..+..|                       
T Consensus       157 ~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel  236 (406)
T COG1222         157 DEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL  236 (406)
T ss_pred             HHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .+++-||++||+++.|||||+||||||+.
T Consensus       237 F~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRk  316 (406)
T COG1222         237 FELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRK  316 (406)
T ss_pred             HHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccce
Confidence                                                               55999999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNA  167 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  167 (236)
                      |+|++|+.+.|..|++.|.+........++..++. +.|+|+|||.            .+|.++.+-||++.+.....++
T Consensus       317 IEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlk------------aictEAGm~AiR~~R~~Vt~~D  384 (406)
T COG1222         317 IEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLK------------AICTEAGMFAIRERRDEVTMED  384 (406)
T ss_pred             eecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHH------------HHHHHHhHHHHHhccCeecHHH
Confidence            99999999999999999987655554444555555 6688888875            4566889999999999888888


Q ss_pred             HHHH
Q 048723          168 EEEA  171 (236)
Q Consensus       168 ~~~~  171 (236)
                      +.+|
T Consensus       385 F~~A  388 (406)
T COG1222         385 FLKA  388 (406)
T ss_pred             HHHH
Confidence            8877

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.2e-28  Score=232.88  Aligned_cols=181  Identities=22%  Similarity=0.231  Sum_probs=156.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------   59 (236)
                      +||+||||+|||+|+++||..+++.|                                                      
T Consensus       353 LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss  432 (782)
T COG0466         353 LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSS  432 (782)
T ss_pred             EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCC
Confidence            99999999999999999999999999                                                      


Q ss_pred             -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                                     .++++||+|+|.++++|.+|++  || .+|.++.++.++...|++.|| 
T Consensus       433 ~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L-  508 (782)
T COG0466         433 FRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL-  508 (782)
T ss_pred             CCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc-
Confidence                                           3499999999999999999999  99 789999999999999999998 


Q ss_pred             ccchhhHHHHHHHHHcCCCCHHHHHHHHcc-cccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHh-HHhHHHH
Q 048723          109 IESHAFFAEINSLLAETNMASADVAENLMP-KSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAK-KKAREEA  186 (236)
Q Consensus       109 ~~~~~~~~~i~~ll~~~gls~a~i~~~l~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  186 (236)
                               +.+.++.+|+.+.++.  +.. +...-...++.++.++.|++...+.+||...+...++.... .....+.
T Consensus       509 ---------iPk~~~~~gL~~~el~--i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l  577 (782)
T COG0466         509 ---------IPKQLKEHGLKKGELT--ITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNL  577 (782)
T ss_pred             ---------chHHHHHcCCCcccee--ecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHH
Confidence                     5666677888877654  111 11134467999999999999999999999999866544443 4666677


Q ss_pred             hhhhhHhHhhhhccCCCCCCCcccccCccc---cccCCCceEEEEecCCCCCC
Q 048723          187 KAEKEEDKHAKQNVKDDGTSDIGVKQNGFV---NKAGGGGEYLILNANGEMGN  236 (236)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  236 (236)
                      +       ++.+....+.+...+++..|||   |||.+||++|+||++.|||+
T Consensus       578 ~-------~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGGd~L~IE~~~~~Gk  623 (782)
T COG0466         578 K-------KYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGGDLLTIEAVKMPGK  623 (782)
T ss_pred             H-------HHhCCcccCccccccCCCCeeEeeeeeecCCceEEEEEEEEecCC
Confidence            7       9999999999999999999998   99999999999999999996

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.6e-27  Score=219.78  Aligned_cols=136  Identities=26%  Similarity=0.364  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++|+++.+.+...+.+++.|.++|+.+++|+|||||||||||+++++||++.+.+|                       
T Consensus       440 E~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~i  519 (693)
T KOG0730|consen  440 EELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREV  519 (693)
T ss_pred             HHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999998                       


Q ss_pred             ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723           60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM   91 (236)
Q Consensus        60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~   91 (236)
                                                                      ..+++||++||+++.||+|++||||||++|++
T Consensus       520 F~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyV  599 (693)
T KOG0730|consen  520 FRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYV  599 (693)
T ss_pred             HHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEee
Confidence                                                            22799999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      +.|+.+.|..|++.++...+.....++.++++ +.|||++||.+.|..
T Consensus       600 plPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~  647 (693)
T KOG0730|consen  600 PLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQE  647 (693)
T ss_pred             cCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHH
Confidence            99999999999999998777666667777777 889999999887774

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.6e-26  Score=198.50  Aligned_cols=157  Identities=26%  Similarity=0.378  Sum_probs=133.4

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +.+.++|.+.+..++.+|++|..+|+.+++|++|||+||||||.|++++|+.....|                       
T Consensus       191 e~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRql  270 (440)
T KOG0726|consen  191 ESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVREL  270 (440)
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHH
Confidence            357899999999999999999999999999999999999999999999999998888                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .+.+-||++||++++|||+|+||||+|+.
T Consensus       271 F~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrK  350 (440)
T KOG0726|consen  271 FRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRK  350 (440)
T ss_pred             HHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccc
Confidence                                                               45899999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNA  167 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  167 (236)
                      |+|+.|+...++.||..|...........+..++- ...+|++|            ...+|.++.+-+|++++.+....+
T Consensus       351 Ief~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAd------------IkAictEaGllAlRerRm~vt~~D  418 (440)
T KOG0726|consen  351 IEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGAD------------IKAICTEAGLLALRERRMKVTMED  418 (440)
T ss_pred             cccCCCchhhhceeEEEeecccchhccccHHHHhhccccccccc------------HHHHHHHHhHHHHHHHHhhccHHH
Confidence            99999999999999999876544332222333332 44555555            456777899999999999988888


Q ss_pred             HHHH
Q 048723          168 EEEA  171 (236)
Q Consensus       168 ~~~~  171 (236)
                      +.++
T Consensus       419 F~ka  422 (440)
T KOG0726|consen  419 FKKA  422 (440)
T ss_pred             HHHH
Confidence            8876

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.9e-26  Score=210.66  Aligned_cols=135  Identities=24%  Similarity=0.343  Sum_probs=120.8

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.|+++ +.+..|+++|..|.++|-..++|+||+||||||||+|++++|++.+.+|                       
T Consensus       310 DEAK~EL-eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdL  388 (752)
T KOG0734|consen  310 DEAKQEL-EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDL  388 (752)
T ss_pred             HHHHHHH-HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHH
Confidence            4567777 4478899999999999999999999999999999999999999999998                       


Q ss_pred             ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723           60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM   91 (236)
Q Consensus        60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~   91 (236)
                                                                      +..++||++||.++.||+||.||||||++|.+
T Consensus       389 F~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~V  468 (752)
T KOG0734|consen  389 FAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTV  468 (752)
T ss_pred             HHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEec
Confidence                                                            34789999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      +.|+...|..|++.|+.........+..-++. +.||+++|+.+.+..
T Consensus       469 p~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNq  516 (752)
T KOG0734|consen  469 PLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQ  516 (752)
T ss_pred             CCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHH
Confidence            99999999999999998766655555555666 899999999988875

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.7e-25  Score=213.26  Aligned_cols=135  Identities=28%  Similarity=0.385  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.|++|.+ +..|+++|+.|.++|..+++|+||+||||||||.||||+|++.+.+|                       
T Consensus       317 deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~l  395 (774)
T KOG0731|consen  317 DEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDL  395 (774)
T ss_pred             HHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHH
Confidence            467888866 77899999999999999999999999999999999999999999999                       


Q ss_pred             ----------------------------------------------------cCceEEEEeecCccccchHHHhcCCccc
Q 048723           60 ----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDK   87 (236)
Q Consensus        60 ----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~   87 (236)
                                                                          ...++|+++||+++.||+|++||||||+
T Consensus       396 f~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr  475 (774)
T KOG0731|consen  396 FPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDR  475 (774)
T ss_pred             HHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCcccc
Confidence                                                                3379999999999999999999999999


Q ss_pred             EEecccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           88 RIEMSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        88 ~i~~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      +|+++.|+...|..|+..|++..... ...++.+++. +.||+++||+++|..
T Consensus       476 ~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ne  528 (774)
T KOG0731|consen  476 QIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNE  528 (774)
T ss_pred             ceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhH
Confidence            99999999999999999998765543 3445566665 889999999988774

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.4e-25  Score=210.10  Aligned_cols=187  Identities=20%  Similarity=0.257  Sum_probs=140.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------   59 (236)
                      +||+||||.|||+++++||+.+++.|                                                      
T Consensus       441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g  520 (906)
T KOG2004|consen  441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSG  520 (906)
T ss_pred             EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCC
Confidence            99999999999999999999999998                                                      


Q ss_pred             -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                                     .+.++||||+|.++.||++|++  || .+|+++.+..++.-.|.+.|| 
T Consensus       521 ~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL-  596 (906)
T KOG2004|consen  521 HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL-  596 (906)
T ss_pred             CCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh-
Confidence                                           3489999999999999999999  99 789999999999999999998 


Q ss_pred             ccchhhHHHHHHHHHcCCCCHHHHHHHHcc-cccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHhHHhHHHH-
Q 048723          109 IESHAFFAEINSLLAETNMASADVAENLMP-KSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAKKKAREEA-  186 (236)
Q Consensus       109 ~~~~~~~~~i~~ll~~~gls~a~i~~~l~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  186 (236)
                               +.+.+...|+++.++.  +.. +...-...+|.++.++.|++..++++++.+.+...+.....+.++... 
T Consensus       597 ---------ip~a~~~~gl~~e~v~--is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~~~~~~~~~~~~~  665 (906)
T KOG2004|consen  597 ---------IPQALKDCGLKPEQVK--ISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGENSKEESAEKNGR  665 (906)
T ss_pred             ---------hhHHHHHcCCCHHhcC--ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence                     5666678899888765  111 112445789999999999999999999999987444321000000000 


Q ss_pred             ---hhhh------------------------hHhHhhhhccCCCCCCCcccccCccc---cccCCCceEEEEecCCCCC
Q 048723          187 ---KAEK------------------------EEDKHAKQNVKDDGTSDIGVKQNGFV---NKAGGGGEYLILNANGEMG  235 (236)
Q Consensus       187 ---~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  235 (236)
                         ....                        ..-.++.++.....+.-.....+|||   |||..||++||||++.+-|
T Consensus       666 ~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~e~~y~~tp~GVvmGLaWT~mGG~~lyvEts~~~~  744 (906)
T KOG2004|consen  666 ESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTSERMYEVTPPGVVMGLAWTAMGGSTLYVETSLMRG  744 (906)
T ss_pred             cccccccccccccCcccccccCCcceeeecHHHHHHHhCCCcccHHHHhccCCCeeEEEEEEecCCCeEEEEEEEEecc
Confidence               0000                        01113344444444444455788887   9999999999999998754

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=8.7e-24  Score=196.80  Aligned_cols=134  Identities=22%  Similarity=0.295  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      +.+.++...+..++++++.|..+|+..+.|+||+||||||||.|||++|++.+.+|                        
T Consensus       518 ~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vF  597 (802)
T KOG0733|consen  518 EVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVF  597 (802)
T ss_pred             HHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHH
Confidence            57888888899999999999999999999999999999999999999999999999                        


Q ss_pred             -----------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecc
Q 048723           60 -----------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS   92 (236)
Q Consensus        60 -----------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~   92 (236)
                                                                     ..++.||++||+|+.+|||++||||+|..++++
T Consensus       598 qRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~  677 (802)
T KOG0733|consen  598 QRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG  677 (802)
T ss_pred             HHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence                                                           237899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhcccchh--hHHHHHHHHH---cCCCCHHHHHHHHc
Q 048723           93 YCCFEAFMVLAKSYLDIESHA--FFAEINSLLA---ETNMASADVAENLM  137 (236)
Q Consensus        93 ~p~~~~~~~i~~~~l~~~~~~--~~~~i~~ll~---~~gls~a~i~~~l~  137 (236)
                      .|+.+.|..|++.++.....+  ...++..++.   ..|||++|+..++.
T Consensus       678 lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr  727 (802)
T KOG0733|consen  678 LPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR  727 (802)
T ss_pred             CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence            999999999999998843222  2223344443   46999999986665

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.8e-24  Score=182.20  Aligned_cols=156  Identities=27%  Similarity=0.396  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      -+|++|.+.+..++.+.++|+.+|++++||+|||||||||||+|++++|+.....|                        
T Consensus       162 ~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvf  241 (408)
T KOG0727|consen  162 VQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF  241 (408)
T ss_pred             hhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999988877                        


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        .-++.+|++||+.+.|||+++||||+|+.|
T Consensus       242 rlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrki  321 (408)
T KOG0727|consen  242 RLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI  321 (408)
T ss_pred             HHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccc
Confidence                                                              238999999999999999999999999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE  168 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  168 (236)
                      +|++|+..+++.+|.............++..+.. -..+|+++|            ..+|-++.+.+.++.+--.-.++.
T Consensus       322 efplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi------------~aicqeagm~avr~nryvvl~kd~  389 (408)
T KOG0727|consen  322 EFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADI------------NAICQEAGMLAVRENRYVVLQKDF  389 (408)
T ss_pred             cCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhH------------HHHHHHHhHHHHHhcceeeeHHHH
Confidence            9999999999988887655333222222332222 344555554            455667777777766554444555


Q ss_pred             HHH
Q 048723          169 EEA  171 (236)
Q Consensus       169 ~~~  171 (236)
                      +++
T Consensus       390 e~a  392 (408)
T KOG0727|consen  390 EKA  392 (408)
T ss_pred             HHH
Confidence            543

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=192.30  Aligned_cols=157  Identities=25%  Similarity=0.363  Sum_probs=127.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +.++++|.+.+..++.++.+|..+|+.+++|+||+||||||||+++++||+.++.++                       
T Consensus       151 ~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~l  230 (398)
T PTZ00454        151 DIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDV  230 (398)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999998776                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ..++.||++||+++.+||+++|+||||+.
T Consensus       231 f~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~  310 (398)
T PTZ00454        231 FRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK  310 (398)
T ss_pred             HHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEE
Confidence                                                               12568999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc----cccChHHHHHHHHHHHHHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS----DEEDADSCLKNLIEALKVA  159 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~----~~~~~~~~~~~~~~~L~~~  159 (236)
                      |++++|+.++|..||+.++.........++..++. +.|+|++||..+|..+.    ......++.+++..++++.
T Consensus       311 I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v  386 (398)
T PTZ00454        311 IEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV  386 (398)
T ss_pred             EEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence            99999999999999999977544333334555555 77999999987776521    1122345556666665554

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.2e-23  Score=194.19  Aligned_cols=131  Identities=25%  Similarity=0.243  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------
Q 048723            6 KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------   59 (236)
Q Consensus         6 k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------   59 (236)
                      -.++.+.+ .++.+++.|..+|+.++||+|||||||||||+||++||++++.+|                          
T Consensus       199 ~~el~~li-~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~  277 (802)
T KOG0733|consen  199 LAELCELI-IHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQ  277 (802)
T ss_pred             HHHHHHHH-HHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHH
Confidence            34454544 448899999999999999999999999999999999999999999                          


Q ss_pred             -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723           60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE   90 (236)
Q Consensus        60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~   90 (236)
                                                                       ...++||++||+|+.|||+|+|.||||+-|.
T Consensus       278 A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~  357 (802)
T KOG0733|consen  278 AKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREIC  357 (802)
T ss_pred             HhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceee
Confidence                                                             1379999999999999999999999999999


Q ss_pred             cccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           91 MSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        91 ~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      ++.|+..+|..|++..+........-++.+++. +.||.++|+..+|.
T Consensus       358 l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~  405 (802)
T KOG0733|consen  358 LGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR  405 (802)
T ss_pred             ecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence            999999999999998876544444445666666 77999998876665

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=6e-23  Score=174.69  Aligned_cols=158  Identities=29%  Similarity=0.387  Sum_probs=135.6

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +.+.++|.+.+..+.++|++|..+|+..++|+|||||||||||.|++++|....+.|                       
T Consensus       153 d~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrel  232 (404)
T KOG0728|consen  153 DKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVREL  232 (404)
T ss_pred             HHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999888                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         +.++-+|++||+++-|||+++||||+|+.
T Consensus       233 fvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrk  312 (404)
T KOG0728|consen  233 FVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRK  312 (404)
T ss_pred             HHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCccccc
Confidence                                                               23789999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE  168 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  168 (236)
                      |+|+.|+.+.|..|++.|.+....           +.|+.-..|++.+..+++++-..+|.++.+-+|++++--....++
T Consensus       313 iefp~p~e~ar~~ilkihsrkmnl-----------~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedf  381 (404)
T KOG0728|consen  313 IEFPPPNEEARLDILKIHSRKMNL-----------TRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF  381 (404)
T ss_pred             ccCCCCCHHHHHHHHHHhhhhhch-----------hcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHH
Confidence            999999999999999988653221           336666666666666777777888999999999998776666666


Q ss_pred             HHH
Q 048723          169 EEA  171 (236)
Q Consensus       169 ~~~  171 (236)
                      +=+
T Consensus       382 ema  384 (404)
T KOG0728|consen  382 EMA  384 (404)
T ss_pred             HHH
Confidence            544

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.7e-23  Score=178.17  Aligned_cols=157  Identities=25%  Similarity=0.302  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      ++.+.+.+.+..++-+++-|-++|+.+++|+|||||||||||.+++++|+..+.-|                        
T Consensus       184 eqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf  263 (435)
T KOG0729|consen  184 EQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF  263 (435)
T ss_pred             HHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHH
Confidence            56778889999999999999999999999999999999999999999999998877                        


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        .|++.++++||+++.|||+|+||||+|+.+
T Consensus       264 ~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkv  343 (435)
T KOG0729|consen  264 EMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV  343 (435)
T ss_pred             HHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccce
Confidence                                                              568999999999999999999999999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHHH
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEE  169 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  169 (236)
                      +|++|+.+.|..|++.|..........++           .-++.+|-...+++...+|.++.+-+++.+++-...+++.
T Consensus       344 ef~lpdlegrt~i~kihaksmsverdir~-----------ellarlcpnstgaeirsvcteagmfairarrk~atekdfl  412 (435)
T KOG0729|consen  344 EFGLPDLEGRTHIFKIHAKSMSVERDIRF-----------ELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFL  412 (435)
T ss_pred             eccCCcccccceeEEEeccccccccchhH-----------HHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHH
Confidence            99999999999999988654333222222           1123333334455566788899999999998888888888


Q ss_pred             HH
Q 048723          170 EA  171 (236)
Q Consensus       170 ~~  171 (236)
                      ++
T Consensus       413 ~a  414 (435)
T KOG0729|consen  413 DA  414 (435)
T ss_pred             HH
Confidence            77

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=4.8e-23  Score=176.15  Aligned_cols=155  Identities=28%  Similarity=0.333  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      .+.+++.+.+..+..+++.|.++|+.+++|+|+|||||||||.++++-|...+..|                        
T Consensus       178 kQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAF  257 (424)
T KOG0652|consen  178 KQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAF  257 (424)
T ss_pred             HHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHH
Confidence            46788888899999999999999999999999999999999999999999998888                        


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        ...+-+|++||+.+.|||+++|.||+|+.|
T Consensus       258 aLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKI  337 (424)
T KOG0652|consen  258 ALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKI  337 (424)
T ss_pred             HHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccc
Confidence                                                              237899999999999999999999999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE  168 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  168 (236)
                      +|+.|+.+.|..|+..|.+.........+..++. +.+|.+++..            .+|+++.+-+|++...+....++
T Consensus       338 EfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK------------AVcVEAGMiALRr~atev~heDf  405 (424)
T KOG0652|consen  338 EFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK------------AVCVEAGMIALRRGATEVTHEDF  405 (424)
T ss_pred             cCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe------------eeehhhhHHHHhcccccccHHHH
Confidence            9999999999999999976544443333444444 5677777643            46667777777776666665555


Q ss_pred             HH
Q 048723          169 EE  170 (236)
Q Consensus       169 ~~  170 (236)
                      .+
T Consensus       406 me  407 (424)
T KOG0652|consen  406 ME  407 (424)
T ss_pred             HH
Confidence            54

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.88  E-value=3e-22  Score=183.38  Aligned_cols=158  Identities=25%  Similarity=0.359  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++++++|.+.+..++.++..|..+|+.+++|+||+||||||||+++++||+.++.+|                       
T Consensus       137 ~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~  216 (389)
T PRK03992        137 EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVREL  216 (389)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHH
Confidence            457888999998899999999999999999999999999999999999999988776                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .+++.||++||+++.+|++++|+||||..
T Consensus       217 f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~  296 (389)
T PRK03992        217 FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRI  296 (389)
T ss_pred             HHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceE
Confidence                                                               12578999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc---c-ccChHHHHHHHHHHHHHHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS---D-EEDADSCLKNLIEALKVAK  160 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~---~-~~~~~~~~~~~~~~L~~~~  160 (236)
                      |+++.|+.++|..|++.|+..........+..++. +.|++++|+..+|..+.   . .....++.+++..|+.+.+
T Consensus       297 I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~  373 (389)
T PRK03992        297 IEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVM  373 (389)
T ss_pred             EEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence            99999999999999999976443322223444554 67999999987776411   1 1122355555555555543

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.88  E-value=5.8e-22  Score=183.24  Aligned_cols=156  Identities=26%  Similarity=0.388  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      +++++|.+.+..++.++.+|..+++.+++|++|+||||||||+++++||+.+..++                        
T Consensus       190 ~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF  269 (438)
T PTZ00361        190 QQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELF  269 (438)
T ss_pred             HHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHH
Confidence            46788888888888999999999999999999999999999999999999988765                        


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        .+++.||++||+++.+|++++|+||||+.|
T Consensus       270 ~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I  349 (438)
T PTZ00361        270 RVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKI  349 (438)
T ss_pred             HHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEE
Confidence                                                              124679999999999999999999999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE  168 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  168 (236)
                      +|+.|+.++|..|++.|+..........+..++. +.|+|++||...            |.++.+.|+++.+..+...+.
T Consensus       350 ~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i------------~~eA~~~Alr~~r~~Vt~~D~  417 (438)
T PTZ00361        350 EFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAI------------CTEAGLLALRERRMKVTQADF  417 (438)
T ss_pred             EeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHH------------HHHHHHHHHHhcCCccCHHHH
Confidence            9999999999999999876443322223444444 679999988754            445666666666555555555


Q ss_pred             HHH
Q 048723          169 EEA  171 (236)
Q Consensus       169 ~~~  171 (236)
                      .+|
T Consensus       418 ~~A  420 (438)
T PTZ00361        418 RKA  420 (438)
T ss_pred             HHH
Confidence            554

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.87  E-value=1.1e-21  Score=183.69  Aligned_cols=137  Identities=25%  Similarity=0.263  Sum_probs=109.9

Q ss_pred             HhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------
Q 048723           23 CAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------   59 (236)
Q Consensus        23 ~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------   59 (236)
                      ..++|+.+++|+||+||||||||+++++||+.++.++                                           
T Consensus       251 ~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~  330 (489)
T CHL00195        251 ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKA  330 (489)
T ss_pred             HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhh
Confidence            4567899999999999999999999999999998876                                           


Q ss_pred             ---------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccch
Q 048723           60 ---------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESH  112 (236)
Q Consensus        60 ---------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~  112 (236)
                                                 ...++||+|||+++.||++++|+||||..|+++.|+.+.|..|++.|+.....
T Consensus       331 ~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~  410 (489)
T CHL00195        331 FSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP  410 (489)
T ss_pred             hccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC
Confidence                                       22578999999999999999999999999999999999999999999875422


Q ss_pred             h--hHHHHHHHHH-cCCCCHHHHHHHHcc---cccccChHHHHHHHHHHHHHH
Q 048723          113 A--FFAEINSLLA-ETNMASADVAENLMP---KSDEEDADSCLKNLIEALKVA  159 (236)
Q Consensus       113 ~--~~~~i~~ll~-~~gls~a~i~~~l~~---~~~~~~~~~~~~~~~~~L~~~  159 (236)
                      .  ...++..++. +.|||++||...+..   .+......++.++++.++++-
T Consensus       411 ~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~~  463 (489)
T CHL00195        411 KSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFTTDDILLALKQF  463 (489)
T ss_pred             CcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc
Confidence            1  1234556666 789999999987765   223334455666666666543

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.87  E-value=8.7e-22  Score=193.26  Aligned_cols=135  Identities=27%  Similarity=0.315  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.|+.+.+.+..++..+.+|..+++.+++|+||+||||||||+++++||++++.+|                       
T Consensus       459 ~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~  538 (733)
T TIGR01243       459 EEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREI  538 (733)
T ss_pred             HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHH
Confidence            467888999898889999999999999999999999999999999999999998887                       


Q ss_pred             -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723           60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE   90 (236)
Q Consensus        60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~   90 (236)
                                                                       ..+++||++||+++.||++++|+||||+.|+
T Consensus       539 f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~  618 (733)
T TIGR01243       539 FRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLIL  618 (733)
T ss_pred             HHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEE
Confidence                                                             1267899999999999999999999999999


Q ss_pred             cccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           91 MSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        91 ~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      +++|+.++|..||+.++.........++..++. +.|||++||...|.
T Consensus       619 v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~  666 (733)
T TIGR01243       619 VPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR  666 (733)
T ss_pred             eCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999998876544333334555655 67999999987665

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1e-21  Score=186.76  Aligned_cols=152  Identities=24%  Similarity=0.330  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++|++|++.+..++.++++|. .|+..+.|+|||||||||||.+|||+|.++...|                       
T Consensus       678 eevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~V  756 (953)
T KOG0736|consen  678 EEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREV  756 (953)
T ss_pred             HHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHH
Confidence            4789999999999999999886 4888899999999999999999999999999888                       


Q ss_pred             ----------------------------------------------------cCceEEEEeecCccccchHHHhcCCccc
Q 048723           60 ----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDK   87 (236)
Q Consensus        60 ----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~   87 (236)
                                                                          ...++||++||+|+.|||+|+||||||.
T Consensus       757 FerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDK  836 (953)
T KOG0736|consen  757 FERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDK  836 (953)
T ss_pred             HHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccce
Confidence                                                                2279999999999999999999999999


Q ss_pred             EEecccCC-HHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcc-cccccChHHHHHHHHHHHHHHHHHHhh
Q 048723           88 RIEMSYCC-FEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMP-KSDEEDADSCLKNLIEALKVAKEEARK  165 (236)
Q Consensus        88 ~i~~~~p~-~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~  165 (236)
                      .++++.+. .+.+..+++...+.-..+           .+++-.+|+..|-. +++++...+|..+.+.|+++.....+.
T Consensus       837 LvyvG~~~d~esk~~vL~AlTrkFkLd-----------edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~  905 (953)
T KOG0736|consen  837 LVYVGPNEDAESKLRVLEALTRKFKLD-----------EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIES  905 (953)
T ss_pred             eEEecCCccHHHHHHHHHHHHHHccCC-----------CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999875 555666666655433322           23333444444444 444555567778899999998887766


Q ss_pred             h
Q 048723          166 N  166 (236)
Q Consensus       166 ~  166 (236)
                      .
T Consensus       906 g  906 (953)
T KOG0736|consen  906 G  906 (953)
T ss_pred             c
Confidence            5

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=8.2e-22  Score=186.18  Aligned_cols=135  Identities=27%  Similarity=0.360  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.|+++.+ +..|+++|..|..+|-.+++|++|+||||||||+|++++|++.+.+|                       
T Consensus       156 dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdL  234 (596)
T COG0465         156 DEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL  234 (596)
T ss_pred             HHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHH
Confidence            467788766 67789999999999999999999999999999999999999999997                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         +..++++++||+++.+||||+||||||+.
T Consensus       235 F~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRq  314 (596)
T COG0465         235 FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQ  314 (596)
T ss_pred             HHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCccee
Confidence                                                               22689999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      |.++.|+...|+.|++.|..........++..++. +.||+++++.+.+..
T Consensus       315 I~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NE  365 (596)
T COG0465         315 ILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNE  365 (596)
T ss_pred             eecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHH
Confidence            99999999999999999987665554445555555 789999999887763

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.86  E-value=5.3e-21  Score=163.41  Aligned_cols=149  Identities=26%  Similarity=0.338  Sum_probs=125.6

Q ss_pred             HHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------
Q 048723            9 IKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------------   59 (236)
Q Consensus         9 i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------------   59 (236)
                      -...+..|+.+|+.|.+|.   ++.+|||||||||||+++++||++.+.++                             
T Consensus       132 kcrli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~  208 (368)
T COG1223         132 KCRLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARK  208 (368)
T ss_pred             HHHHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3466788999999998764   56799999999999999999999999998                             


Q ss_pred             -------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCH
Q 048723           60 -------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCF   96 (236)
Q Consensus        60 -------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~   96 (236)
                                                                 +.+++.|++||+++.||++++.  ||..-|+|.+|+.
T Consensus       209 ~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~  286 (368)
T COG1223         209 AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPND  286 (368)
T ss_pred             cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCCh
Confidence                                                       3378999999999999999988  9999999999999


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhH
Q 048723           97 EAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALL  173 (236)
Q Consensus        97 ~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  173 (236)
                      ++|..|++.|....+.+....+..+++ +.|||+.||.+.+..           .++.+++.+-++++++++.+.+..
T Consensus       287 eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK-----------~aLh~Ai~ed~e~v~~edie~al~  353 (368)
T COG1223         287 EERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK-----------TALHRAIAEDREKVEREDIEKALK  353 (368)
T ss_pred             HHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH-----------HHHHHHHHhchhhhhHHHHHHHHH
Confidence            999999999987666666666666665 789999999977774           557777777777777777776633

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=4.8e-21  Score=171.02  Aligned_cols=146  Identities=23%  Similarity=0.227  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      +.|+-|.+.|..++--|++|..+- .+.+|+|++||||||||+|||++|.+++-.|                        
T Consensus       219 ~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLF  297 (491)
T KOG0738|consen  219 EAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLF  297 (491)
T ss_pred             HHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHH
Confidence            578888899999999999998764 4558999999999999999999999999888                        


Q ss_pred             -------------------------------------------------cCc---eEEEEeecCccccchHHHhcCCccc
Q 048723           60 -------------------------------------------------VGE---KGIVFTTNYVDKLDPALIRRGRMDK   87 (236)
Q Consensus        60 -------------------------------------------------~~~---~~vi~ttN~~~~ld~al~r~gR~d~   87 (236)
                                                                       ..+   ++|+++||.|+.||.|++|  ||..
T Consensus       298 emARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEK  375 (491)
T KOG0738|consen  298 EMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEK  375 (491)
T ss_pred             HHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhh
Confidence                                                             113   8899999999999999999  9999


Q ss_pred             EEecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHh
Q 048723           88 RIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEAR  164 (236)
Q Consensus        88 ~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~  164 (236)
                      .|++++|+.+.|..+++..++.........+..+++ ..|||++||.++|.            ++-+.++++......
T Consensus       376 RIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr------------eAsm~~mRR~i~g~~  441 (491)
T KOG0738|consen  376 RIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR------------EASMMAMRRKIAGLT  441 (491)
T ss_pred             heeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH------------HHHHHHHHHHHhcCC
Confidence            999999999999999999988655443333444544 66888888866555            556666666555443

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.85  E-value=8.8e-21  Score=178.68  Aligned_cols=156  Identities=24%  Similarity=0.349  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.|+++.+ +..++..+..|..++..+++|+||+||||||||+++++||+.++.++                       
T Consensus        61 ~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~  139 (495)
T TIGR01241        61 DEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL  139 (495)
T ss_pred             HHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHH
Confidence            456777776 45567888899999999999999999999999999999999998776                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .+.++||++||+++.|||+++|+||||+.
T Consensus       140 f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~  219 (495)
T TIGR01241       140 FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQ  219 (495)
T ss_pred             HHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEE
Confidence                                                               01368999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc----cccChHHHHHHHHHHHHHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS----DEEDADSCLKNLIEALKVA  159 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~----~~~~~~~~~~~~~~~L~~~  159 (236)
                      |+++.|+.+.|..|++.|+..........+..++. +.|+|++||...+....    ......++.+++..++.+.
T Consensus       220 i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~  295 (495)
T TIGR01241       220 VVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV  295 (495)
T ss_pred             EEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            99999999999999999987544333334555555 77999999998877521    1123346677777777654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.85  E-value=1.2e-20  Score=171.24  Aligned_cols=135  Identities=29%  Similarity=0.390  Sum_probs=112.9

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++++++|.+.+..++.++..|..+|+.+++|++|+||||||||+++++|++.++.++                       
T Consensus       128 ~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~  207 (364)
T TIGR01242       128 EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREI  207 (364)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHH
Confidence            467888888888888999999999999999999999999999999999999988776                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .+++.||++||+++.+|++++|+||||+.
T Consensus       208 f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~  287 (364)
T TIGR01242       208 FELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRI  287 (364)
T ss_pred             HHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceE
Confidence                                                               12567999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      |+++.|+.++|..|++.|+..........+..++. +.|++++|+..++.
T Consensus       288 i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~  337 (364)
T TIGR01242       288 IEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT  337 (364)
T ss_pred             EEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999999875433221122344444 56899998876555

Many proteins may score above the trusted cutoff because an internal

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.4e-20  Score=177.15  Aligned_cols=136  Identities=29%  Similarity=0.371  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      .+.|+.+.+.+...+..++.|..+++.+++|+||+||||||||++++++|+.++.+|                       
T Consensus       248 ~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~  327 (494)
T COG0464         248 EEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIREL  327 (494)
T ss_pred             HHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHH
Confidence            457888999999999999999999999999999999999999999999999999888                       


Q ss_pred             ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723           60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM   91 (236)
Q Consensus        60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~   91 (236)
                                                                      ..++++|++||+++.+|++++|+||||..|++
T Consensus       328 F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v  407 (494)
T COG0464         328 FEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYV  407 (494)
T ss_pred             HHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeec
Confidence                                                            23788999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhcccchh--hHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           92 SYCCFEAFMVLAKSYLDIESHA--FFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        92 ~~p~~~~~~~i~~~~l~~~~~~--~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      +.|+...|..+++.|+......  ....+..+++ +.++|++||...|..
T Consensus       408 ~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~e  457 (494)
T COG0464         408 PLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVRE  457 (494)
T ss_pred             CCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence            9999999999999999844332  2234445555 678999988766664

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.2e-20  Score=167.55  Aligned_cols=134  Identities=24%  Similarity=0.240  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhC-CCCCcceEEECCCCCChHHHHHHHHhhcCCcc----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIG-KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~-~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------   59 (236)
                      +..++++.+.+..++..+++|.... +.+++|+||+||||||||++|+++|++.+..|                      
T Consensus        98 e~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~A  177 (386)
T KOG0737|consen   98 EEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKA  177 (386)
T ss_pred             HHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHH
Confidence            4578899999999999999997555 46788899999999999999999999999988                      


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ...++|+++||+|..||.|++|  ||...
T Consensus       178 vFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~r  255 (386)
T KOG0737|consen  178 VFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRR  255 (386)
T ss_pred             HHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcce
Confidence                                                               2258999999999999999999  99999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      ++++.|+..+|..|++.++........-++..++. +.|||++||.+.|..
T Consensus       256 f~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~  306 (386)
T KOG0737|consen  256 FHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRL  306 (386)
T ss_pred             eeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHH
Confidence            99999999999999999998766654445566665 779999999988885

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.83  E-value=4.3e-20  Score=173.27  Aligned_cols=131  Identities=27%  Similarity=0.323  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCc----------c-------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD----------L-------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~----------~-------------   59 (236)
                      ++++++|.+.+..++.++++|+.+++.+++|+|||||||||||++++++|+.++.+          |             
T Consensus       188 ~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyv  267 (512)
T TIGR03689       188 DSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYV  267 (512)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccccc
Confidence            35778899999999999999999999999999999999999999999999987533          1             


Q ss_pred             ---------------------------------------------------------------cCceEEEEeecCccccc
Q 048723           60 ---------------------------------------------------------------VGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        60 ---------------------------------------------------------------~~~~~vi~ttN~~~~ld   76 (236)
                                                                                     .++++||++||+++.||
T Consensus       268 Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LD  347 (512)
T TIGR03689       268 GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMID  347 (512)
T ss_pred             chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCC
Confidence                                                                           13678999999999999


Q ss_pred             hHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHc
Q 048723           77 PALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLM  137 (236)
Q Consensus        77 ~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~  137 (236)
                      |+++||||||++|+|++|+.+++..|++.|+.... +....   +....|.+++++...+.
T Consensus       348 pALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l-~l~~~---l~~~~g~~~a~~~al~~  404 (512)
T TIGR03689       348 PAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL-PLDAD---LAEFDGDREATAAALIQ  404 (512)
T ss_pred             HhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC-CchHH---HHHhcCCCHHHHHHHHH
Confidence            99999999999999999999999999999986421 12222   23345777776654443

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.8e-20  Score=163.29  Aligned_cols=154  Identities=23%  Similarity=0.326  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      ++..++.+.+...+..+.++-.+|+.+|.|++||||||||||.+++++|..++..|                        
T Consensus       139 ~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf  218 (388)
T KOG0651|consen  139 YQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMF  218 (388)
T ss_pred             HHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHH
Confidence            35567788888888999999999999999999999999999999999999999988                        


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        .+.+-+|+|||+++.|||+|+|+||+|+.+
T Consensus       219 ~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~  298 (388)
T KOG0651|consen  219 RYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKV  298 (388)
T ss_pred             HHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCcccccee
Confidence                                                              458999999999999999999999999999


Q ss_pred             ecccCCHHHHHHHHHHhhccc---chhhHHHHHHHHHcCCCCHHHHHHHHcccccccCh----HHHHHHHHHHHHHH
Q 048723           90 EMSYCCFEAFMVLAKSYLDIE---SHAFFAEINSLLAETNMASADVAENLMPKSDEEDA----DSCLKNLIEALKVA  159 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~---~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~----~~~~~~~~~~L~~~  159 (236)
                      +++.|+...|..+++.|-...   +.-.+..+.++..  +|.++++.+.|...-....+    .+..+++..++++.
T Consensus       299 ~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~  373 (388)
T KOG0651|consen  299 EIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQ  373 (388)
T ss_pred             ccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHH
Confidence            999999999998888774322   1112344444444  89999998888873222222    34556666555544

>CHL00176 ftsH cell division protein; Validated

Probab=99.83  E-value=8.4e-20  Score=175.84  Aligned_cols=156  Identities=26%  Similarity=0.331  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++++.+ +..++..+..|..++..+++|+||+||||||||+++++||+.++.++                       
T Consensus       189 ~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~l  267 (638)
T CHL00176        189 EEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDL  267 (638)
T ss_pred             HHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHH
Confidence            345666654 55677888899999999999999999999999999999999988776                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ...++||++||+++.+|++++|+||||+.
T Consensus       268 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~  347 (638)
T CHL00176        268 FKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQ  347 (638)
T ss_pred             HHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceE
Confidence                                                               11468999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc----cccChHHHHHHHHHHHHHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS----DEEDADSCLKNLIEALKVA  159 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~----~~~~~~~~~~~~~~~L~~~  159 (236)
                      |.++.|+.++|..|++.|+..........+..++. +.||+++||.+.+..++    ......++.+++..++.+.
T Consensus       348 I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv  423 (638)
T CHL00176        348 ITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV  423 (638)
T ss_pred             EEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence            99999999999999999987644444445566665 78999999998777521    1223346667777776654

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.4e-19  Score=169.56  Aligned_cols=135  Identities=24%  Similarity=0.295  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      +.|+.+.+.+..+.+-+.+|.+..+..+.|+|||||||||||.|+.++|...+..|                        
T Consensus       674 ~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF  753 (952)
T KOG0735|consen  674 EAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLF  753 (952)
T ss_pred             HHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHH
Confidence            56778888888888889999999999999999999999999999999999999888                        


Q ss_pred             -----------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecc
Q 048723           60 -----------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS   92 (236)
Q Consensus        60 -----------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~   92 (236)
                                                                     ..++.|+++|.+|+.|||||+||||+|+.++-+
T Consensus       754 ~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~  833 (952)
T KOG0735|consen  754 ERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCP  833 (952)
T ss_pred             HHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCC
Confidence                                                           227889999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           93 YCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        93 ~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      .|+..+|..|++........+...++..++. +.|||++|++.++..
T Consensus       834 ~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~  880 (952)
T KOG0735|consen  834 LPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYN  880 (952)
T ss_pred             CCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHH
Confidence            9999999999998765444444555666665 889999999988874

>TIGR00763 lon ATP-dependent protease La

Probab=99.80  E-value=4.6e-19  Score=174.92  Aligned_cols=147  Identities=19%  Similarity=0.177  Sum_probs=109.2

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcC-------CCCHHHHHH
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAET-------NMASADVAE  134 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~-------gls~a~i~~  134 (236)
                      .++||+|||.++.+|+++++  || .+|.|+.|+.+.+..|++.|+.          .+.+...       .++...+. 
T Consensus       463 ~v~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~----------~~~~~~~~l~~~~~~~~~~~l~-  528 (775)
T TIGR00763       463 KVIFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLI----------PKALEDHGLKPDELKITDEALL-  528 (775)
T ss_pred             CEEEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHH----------HHHHHHcCCCcceEEECHHHHH-
Confidence            47889999999999999999  88 4789999999999999998872          2222222       34444333 


Q ss_pred             HHcccccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHH------hHHhHHHHhhhhhHhHhhhhccCCCCCCCc
Q 048723          135 NLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEA------KKKAREEAKAEKEEDKHAKQNVKDDGTSDI  208 (236)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (236)
                      .+.       ..+|.++.++.|++..++..++...+........      ....++..+       .+.+......+...
T Consensus       529 ~i~-------~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~-------~~lg~~~~~~~~~~  594 (775)
T TIGR00763       529 LLI-------KYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLK-------KYLGKPVFTYERAY  594 (775)
T ss_pred             HHH-------HhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHH-------HhcCccccccchhc
Confidence            222       2477788899999999999888877653211111      123344444       88888888877777


Q ss_pred             ccccCccc---cccCCCceEEEEecCCCCCC
Q 048723          209 GVKQNGFV---NKAGGGGEYLILNANGEMGN  236 (236)
Q Consensus       209 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  236 (236)
                      ....+|+|   |||++||.+++||++.++|+
T Consensus       595 ~~~~~G~v~gla~~~~~g~~~~iE~~~~~G~  625 (775)
T TIGR00763       595 EVTPPGVVMGLAWTPMGGDTLFIETTKVAGK  625 (775)
T ss_pred             cCCCCeEEEEEEEeCCCcEEEEEEEEEeCCC
Confidence            77889997   99999999999999999984

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.79  E-value=1.4e-18  Score=168.33  Aligned_cols=134  Identities=25%  Similarity=0.332  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      ..+.++.+ +..++..+..+..++..+++|++|+||||||||++++++++.++.+|                        
T Consensus       159 ~~~~~l~~-i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f  237 (644)
T PRK10733        159 EAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMF  237 (644)
T ss_pred             HHHHHHHH-HHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHH
Confidence            34455544 44556777788888899999999999999999999999999998876                        


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        ...+++|++||+++.||++++|+||||+.|
T Consensus       238 ~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i  317 (644)
T PRK10733        238 EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV  317 (644)
T ss_pred             HHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEE
Confidence                                                              114789999999999999999999999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      +++.|+.+.|..|++.|+.........++..++. +.|||++||.+++..
T Consensus       318 ~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~e  367 (644)
T PRK10733        318 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE  367 (644)
T ss_pred             EcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHH
Confidence            9999999999999999987544332333445555 789999999988875

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=7.2e-19  Score=173.35  Aligned_cols=135  Identities=24%  Similarity=0.218  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      ..++++++.|..++-.+++|.++++.++||+||+||||||||++++++|..+....                        
T Consensus       272 ~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERq  351 (1080)
T KOG0732|consen  272 NYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQ  351 (1080)
T ss_pred             HHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHH
Confidence            46788999999999999999999999999999999999999999999999885443                        


Q ss_pred             ----------------------------------------------------cCceEEEEeecCccccchHHHhcCCccc
Q 048723           60 ----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDK   87 (236)
Q Consensus        60 ----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~   87 (236)
                                                                          .|.+++|++||+++.+||+++||||||+
T Consensus       352 lrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdr  431 (1080)
T KOG0732|consen  352 LRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDR  431 (1080)
T ss_pred             HHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccce
Confidence                                                                6699999999999999999999999999


Q ss_pred             EEecccCCHHHHHHHHHHhhcc-cchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           88 RIEMSYCCFEAFMVLAKSYLDI-ESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        88 ~i~~~~p~~~~~~~i~~~~l~~-~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      .++|++|+.+.|..|+..|.+. ...........+++ +.|+-++|+..+|..
T Consensus       432 ef~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTe  484 (1080)
T KOG0732|consen  432 EFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTE  484 (1080)
T ss_pred             eEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHH
Confidence            9999999999999999988763 33323344455555 778888887766663

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.78  E-value=3.3e-19  Score=175.34  Aligned_cols=176  Identities=17%  Similarity=0.169  Sum_probs=129.6

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------------   59 (236)
                      ..++|+||||+||||++++||+.++.++                                                    
T Consensus       350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~  429 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMS  429 (784)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcc
Confidence            3489999999999999999999988876                                                    


Q ss_pred             ---------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           60 ---------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        60 ---------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                                                       .+.+++|+|+|.. .||++|++  || .+|.|..++.++...|++.|
T Consensus       430 ~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~  505 (784)
T PRK10787        430 SDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRH  505 (784)
T ss_pred             cccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHh
Confidence                                             1578999999998 59999999  89 57888888899999999999


Q ss_pred             hcccchhhHHHHHHHHHc-------CCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHH-HH
Q 048723          107 LDIESHAFFAEINSLLAE-------TNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAE-EA  178 (236)
Q Consensus       107 l~~~~~~~~~~i~~ll~~-------~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~  178 (236)
                      +..          +.++.       ..++.+ +.+.+..       .++.+...+.|++..++..++...+...... ..
T Consensus       506 L~~----------k~~~~~~l~~~~l~i~~~-ai~~ii~-------~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~  567 (784)
T PRK10787        506 LLP----------KQIERNALKKGELTVDDS-AIIGIIR-------YYTREAGVRSLEREISKLCRKAVKQLLLDKSLKH  567 (784)
T ss_pred             hhH----------HHHHHhCCCCCeEEECHH-HHHHHHH-------hCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            821          11121       233444 2233331       2345666777777777777666665422211 11


Q ss_pred             hHHhHHHHhhhhhHhHhhhhccCCCCCCCcccccCccc---cccCCCceEEEEecCCCCCC
Q 048723          179 KKKAREEAKAEKEEDKHAKQNVKDDGTSDIGVKQNGFV---NKAGGGGEYLILNANGEMGN  236 (236)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  236 (236)
                      .....+...       ++.+......+.......+|||   |||++||++|+||+..+||+
T Consensus       568 v~v~~~~~~-------~~lg~~~~~~~~~~~~~~~G~~~gla~t~~gg~~l~iE~~~~~g~  621 (784)
T PRK10787        568 IEINGDNLH-------DYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGK  621 (784)
T ss_pred             eeecHHHHH-------HHhCCCccccchhhcCCCceEEEEeEEeCCCeEEEEEEEEEecCC
Confidence            224445555       8999888887777777899998   99999999999999999996

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.2e-19  Score=156.05  Aligned_cols=127  Identities=28%  Similarity=0.280  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      ..|+.+.+.|..+++-|++|.. .-.+.+|+|||||||||||.|++++|.+.+..|                        
T Consensus       140 ~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLF  218 (439)
T KOG0739|consen  140 GAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLF  218 (439)
T ss_pred             hHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHH
Confidence            4688999999999999988875 344568999999999999999999999999887                        


Q ss_pred             ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723           60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM   91 (236)
Q Consensus        60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~   91 (236)
                                                                      ...++|+++||-++.||.+++|  ||+..|++
T Consensus       219 emARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYI  296 (439)
T KOG0739|consen  219 EMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYI  296 (439)
T ss_pred             HHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--Hhhcceec
Confidence                                                            3378999999999999999999  99999999


Q ss_pred             ccCCHHHHHHHHHHhhcccchhhH-HHHHHHHH-cCCCCHHHHH
Q 048723           92 SYCCFEAFMVLAKSYLDIESHAFF-AEINSLLA-ETNMASADVA  133 (236)
Q Consensus        92 ~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~ll~-~~gls~a~i~  133 (236)
                      ++|....|..+|+.|++..++.+. .++..+.. +.|+|++||.
T Consensus       297 PLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis  340 (439)
T KOG0739|consen  297 PLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS  340 (439)
T ss_pred             cCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence            999999999999999998776653 46666665 7899999874

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.77  E-value=1.3e-18  Score=178.49  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=102.9

Q ss_pred             hhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------
Q 048723           20 KEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------   59 (236)
Q Consensus        20 ~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------   59 (236)
                      +.....+|+.+++|+||+||||||||+||++||+..+.+|                                        
T Consensus      1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206       1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred             cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence            3456778999999999999999999999999998876543                                        


Q ss_pred             -----------------------------------------------------------------------cCceEEEEe
Q 048723           60 -----------------------------------------------------------------------VGEKGIVFT   68 (236)
Q Consensus        60 -----------------------------------------------------------------------~~~~~vi~t   68 (236)
                                                                                             ..+++||+|
T Consensus      1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206       1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred             hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEe
Confidence                                                                                   014789999


Q ss_pred             ecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhh---HHHHHHHHH-cCCCCHHHHHHHHcccc----
Q 048723           69 TNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAF---FAEINSLLA-ETNMASADVAENLMPKS----  140 (236)
Q Consensus        69 tN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~---~~~i~~ll~-~~gls~a~i~~~l~~~~----  140 (236)
                      ||+|+.||||++||||||+.|+++.|+..+|+.++..++...+..+   ..++..++. +.|+|+||++.+|..++    
T Consensus      1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206       1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred             CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988775432111111   123455555 78999999987776411    


Q ss_pred             cccChHHHHHHHHHHHHHH
Q 048723          141 DEEDADSCLKNLIEALKVA  159 (236)
Q Consensus       141 ~~~~~~~~~~~~~~~L~~~  159 (236)
                      ......++...+..|+.+.
T Consensus      1859 rq~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206       1859 TQKKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred             HcCCCccCHHHHHHHHHHH
Confidence            1122234555555555544

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.73  E-value=3.4e-17  Score=160.92  Aligned_cols=135  Identities=30%  Similarity=0.325  Sum_probs=113.1

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++.|.+.+..++..+++|..+++.+++|++|+||||||||+++++||+.++.++                       
T Consensus       184 ~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~l  263 (733)
T TIGR01243       184 KEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREI  263 (733)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHH
Confidence            356788888888888999999999999999999999999999999999999987665                       


Q ss_pred             ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723           60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM   91 (236)
Q Consensus        60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~   91 (236)
                                                                      .+.+++|++||+++.+|++++|+|||+..+++
T Consensus       264 f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i  343 (733)
T TIGR01243       264 FKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVI  343 (733)
T ss_pred             HHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEe
Confidence                                                            23578888999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      +.|+.+.|..|++.++..........+..++. +.|++++++...+.
T Consensus       344 ~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~  390 (733)
T TIGR01243       344 RVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK  390 (733)
T ss_pred             CCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHH
Confidence            99999999999998876443322223445555 77999998876544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=6.7e-18  Score=155.75  Aligned_cols=122  Identities=25%  Similarity=0.347  Sum_probs=101.1

Q ss_pred             hhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------
Q 048723           17 SEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------   59 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------   59 (236)
                      .-.|++..++|+..-+|+|||||||||||.+|+.|...|+..-                                     
T Consensus       242 vFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~  321 (744)
T KOG0741|consen  242 VFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGA  321 (744)
T ss_pred             cCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCc
Confidence            3468899999999999999999999999999999999997553                                     


Q ss_pred             ---------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccC
Q 048723           60 ---------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYC   94 (236)
Q Consensus        60 ---------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p   94 (236)
                                                                   ..+++||+.||+.+.||.||+||||++.++++++|
T Consensus       322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLP  401 (744)
T KOG0741|consen  322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLP  401 (744)
T ss_pred             cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCC
Confidence                                                         23899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhcccch----hhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           95 CFEAFMVLAKSYLDIESH----AFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        95 ~~~~~~~i~~~~l~~~~~----~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      +...|..|++.|......    ....++..++. +.+||+|+|.-++..
T Consensus       402 DE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks  450 (744)
T KOG0741|consen  402 DEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS  450 (744)
T ss_pred             CccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence            999999999988653211    12223444444 679999998766653

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.70  E-value=1.9e-16  Score=142.28  Aligned_cols=99  Identities=19%  Similarity=0.153  Sum_probs=83.3

Q ss_pred             HHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------
Q 048723           22 YCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------   59 (236)
Q Consensus        22 ~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------   59 (236)
                      ++...++.++++++|+||||||||+++++||+.++.++                                          
T Consensus       139 ~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFI  218 (413)
T PLN00020        139 FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFI  218 (413)
T ss_pred             hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence            34446789999999999999999999999999999988                                          


Q ss_pred             -----------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecc
Q 048723           60 -----------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS   92 (236)
Q Consensus        60 -----------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~   92 (236)
                                                                     ...+.||+|||+++.|||+|+|+||||..+  .
T Consensus       219 DEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~  296 (413)
T PLN00020        219 NDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--W  296 (413)
T ss_pred             ehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--C
Confidence                                                           013788999999999999999999999965  4


Q ss_pred             cCCHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 048723           93 YCCFEAFMVLAKSYLDIESHAFFAEINSLLA  123 (236)
Q Consensus        93 ~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~  123 (236)
                      .|+.+.|..|++.++...... ..++.+++.
T Consensus       297 lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~  326 (413)
T PLN00020        297 APTREDRIGVVHGIFRDDGVS-REDVVKLVD  326 (413)
T ss_pred             CCCHHHHHHHHHHHhccCCCC-HHHHHHHHH
Confidence            799999999999998765444 355666665

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=2.3e-16  Score=148.82  Aligned_cols=133  Identities=26%  Similarity=0.310  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------
Q 048723            6 KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------   59 (236)
Q Consensus         6 k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------   59 (236)
                      -..+.+.+...+..+..+..+|..+++|+|+|||||||||.+++++|++.+..+                          
T Consensus       193 ~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~  272 (693)
T KOG0730|consen  193 LSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAE  272 (693)
T ss_pred             HHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHH
Confidence            345667777777888999999999999999999999999999999999998555                          


Q ss_pred             ---------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccC
Q 048723           60 ---------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYC   94 (236)
Q Consensus        60 ---------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p   94 (236)
                                                                   .+.++++.+||+++.||++++| ||||+.++++.|
T Consensus       273 a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP  351 (693)
T KOG0730|consen  273 ALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIP  351 (693)
T ss_pred             HhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCC
Confidence                                                         2478999999999999999999 999999999999


Q ss_pred             CHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHccc
Q 048723           95 CFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPK  139 (236)
Q Consensus        95 ~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~  139 (236)
                      +...|..|++.+..........++..++. ++|+.++|+...|...
T Consensus       352 ~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea  397 (693)
T KOG0730|consen  352 GSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREA  397 (693)
T ss_pred             CchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHH
Confidence            99999999999987665554455666665 8999999998888763

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.3e-16  Score=145.84  Aligned_cols=137  Identities=23%  Similarity=0.240  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      ..|+.+.+.+...+.+++.|..+. .+.+|+||.||||+|||+|+++||.+.+..|                        
T Consensus       160 ~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf  238 (428)
T KOG0740|consen  160 DAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALF  238 (428)
T ss_pred             hHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHH
Confidence            578888888888888888887654 3457899999999999999999999999888                        


Q ss_pred             -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723           60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE   90 (236)
Q Consensus        60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~   90 (236)
                                                                       ...+++|++||.++.+|.+.+|  ||...++
T Consensus       239 ~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~y  316 (428)
T KOG0740|consen  239 KVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLY  316 (428)
T ss_pred             HHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--Hhhceee
Confidence                                                             3389999999999999999999  9999999


Q ss_pred             cccCCHHHHHHHHHHhhcccchhhH-HHHHHHHH-cCCCCHHHHHHHHccccccc
Q 048723           91 MSYCCFEAFMVLAKSYLDIESHAFF-AEINSLLA-ETNMASADVAENLMPKSDEE  143 (236)
Q Consensus        91 ~~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~ll~-~~gls~a~i~~~l~~~~~~~  143 (236)
                      ++.|+.+.|..+|..++....+.+. .++..++. +.|||++||.++|...+...
T Consensus       317 iplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p  371 (428)
T KOG0740|consen  317 IPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGP  371 (428)
T ss_pred             ecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCc
Confidence            9999999999999999887744433 56677776 78999999998888644333

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=9.2e-14  Score=125.51  Aligned_cols=108  Identities=25%  Similarity=0.330  Sum_probs=86.9

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------------
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------------   59 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------------   59 (236)
                      .+-|.++||||||||||++++-||...+.++                                                 
T Consensus       382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk  461 (630)
T KOG0742|consen  382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK  461 (630)
T ss_pred             chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence            3456699999999999999999999999888                                                 


Q ss_pred             ---------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc-------cc
Q 048723           60 ---------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI-------ES  111 (236)
Q Consensus        60 ---------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~-------~~  111 (236)
                                           +...+++++||++..||.++-+  |+|.+++|++|-.++|..|++.|+..       ..
T Consensus       462 tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~  539 (630)
T KOG0742|consen  462 TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSG  539 (630)
T ss_pred             hhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCC
Confidence                                 3378899999999999999999  99999999999999999998887641       01


Q ss_pred             h--------------------hhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723          112 H--------------------AFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus       112 ~--------------------~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      .                    .....+...+. +.|||+.+|..++..
T Consensus       540 ~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~  587 (630)
T KOG0742|consen  540 KPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS  587 (630)
T ss_pred             CCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence            0                    01122233333 789999999877775

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.46  E-value=1.8e-13  Score=117.15  Aligned_cols=138  Identities=16%  Similarity=0.266  Sum_probs=112.9

Q ss_pred             HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                      .+...|.....++++++.+..|  ++|+||+||||||+++.|.+...++   .|-|.+...++..+|+..+|+ ++.++|
T Consensus         6 nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr-~IGYvi   81 (309)
T COG1125           6 NVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRR-KIGYVI   81 (309)
T ss_pred             eeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHH-hhhhhh
Confidence            3445566788899999999999  8899999999999999999999999   899999999999999977775 788777


Q ss_pred             ----ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcc-cccccChHHHHHHHH
Q 048723           90 ----EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMP-KSDEEDADSCLKNLI  153 (236)
Q Consensus        90 ----~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~-~~~~~~~~~~~~~~~  153 (236)
                          .||.-+..+--.+.-.+++|.......++..++...|+.|++..+.+-. .|+++..++-+.+.+
T Consensus        82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL  150 (309)
T COG1125          82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL  150 (309)
T ss_pred             hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence                4666676666667778888988888899999999999999888776665 666666665544433

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1e-12  Score=115.69  Aligned_cols=78  Identities=33%  Similarity=0.440  Sum_probs=69.4

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------   59 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------   59 (236)
                      +.+.|-+||+||||||||+|+|+||..+....                                                
T Consensus       174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf  253 (423)
T KOG0744|consen  174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF  253 (423)
T ss_pred             eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence            45677799999999999999999999886544                                                


Q ss_pred             -----------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHH
Q 048723           60 -----------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA   98 (236)
Q Consensus        60 -----------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~   98 (236)
                                                               ..++++++|+|-.+.||.|+.+  |-|.+.++++|+...
T Consensus       254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~a  331 (423)
T KOG0744|consen  254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEA  331 (423)
T ss_pred             EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHH
Confidence                                                     3489999999999999999999  999999999999999


Q ss_pred             HHHHHHHhh
Q 048723           99 FMVLAKSYL  107 (236)
Q Consensus        99 ~~~i~~~~l  107 (236)
                      +..|++..+
T Consensus       332 i~~Ilksci  340 (423)
T KOG0744|consen  332 IYEILKSCI  340 (423)
T ss_pred             HHHHHHHHH
Confidence            999988763

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.35  E-value=2.4e-12  Score=99.00  Aligned_cols=59  Identities=47%  Similarity=0.803  Sum_probs=52.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------   59 (236)
                      +||+||||||||++++.+|..++.++                                                      
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~   80 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS   80 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence            68999999999999999999999877                                                      


Q ss_pred             -------------------cCceEEEEeecCccccchHHHhcCCcccEEeccc
Q 048723           60 -------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSY   93 (236)
Q Consensus        60 -------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~   93 (236)
                                         .+.+++|++||+++.+|++++| +||+..|+++.
T Consensus        81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~  132 (132)
T PF00004_consen   81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL  132 (132)
T ss_dssp             HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred             ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence                               1358999999999999999998 89999998863

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.28  E-value=3.7e-11  Score=101.79  Aligned_cols=103  Identities=20%  Similarity=0.312  Sum_probs=72.2

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------------   59 (236)
                      ..++||||||+||||||+.||++++.++                                                    
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~i  130 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKI  130 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEE
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeE
Confidence            3499999999999999999999999988                                                    


Q ss_pred             ----------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHH-HHHHH
Q 048723           60 ----------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAE-INSLL  122 (236)
Q Consensus        60 ----------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~-i~~ll  122 (236)
                                      ...--+|++|++...|+.+|+.  ||..+..+.+++.++...|+++....-......+ +..++
T Consensus       131 diiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia  208 (233)
T PF05496_consen  131 DIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIA  208 (233)
T ss_dssp             EEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHH
T ss_pred             EEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence                            1145678999999999999988  9988889999999999999987655444444433 34444


Q ss_pred             HcCCCCHHHHHHHHc
Q 048723          123 AETNMASADVAENLM  137 (236)
Q Consensus       123 ~~~gls~a~i~~~l~  137 (236)
                      ....-+|. |++.+.
T Consensus       209 ~rsrGtPR-iAnrll  222 (233)
T PF05496_consen  209 RRSRGTPR-IANRLL  222 (233)
T ss_dssp             HCTTTSHH-HHHHHH
T ss_pred             HhcCCChH-HHHHHH
Confidence            55666777 555544

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>CHL00181 cbbX CbbX; Provisional

Probab=99.19  E-value=7.7e-10  Score=97.72  Aligned_cols=104  Identities=23%  Similarity=0.321  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCC-cc--eEEECCCCCChHHHHHHHHhhcCC-------cc-------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWK-RG--YLLYGPPGTGKSTMIAAMANFLNY-------DL-------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~-rg--~lL~GPpGtGKTtlakaia~~l~~-------~~-------------   59 (236)
                      +++|++|.+.+.. ..........|+..+ +|  ++|+|||||||||+|+++|..+..       ++             
T Consensus        29 ~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~  107 (287)
T CHL00181         29 APVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYI  107 (287)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHh
Confidence            3567777665533 333456667777654 34  899999999999999999886521       11             


Q ss_pred             ---------------------------------------------------cCceEEEEeecC--cc---ccchHHHhcC
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNY--VD---KLDPALIRRG   83 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~--~~---~ld~al~r~g   83 (236)
                                                                         .+..+||++++.  ++   .++|++++  
T Consensus       108 g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~s--  185 (287)
T CHL00181        108 GHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSS--  185 (287)
T ss_pred             ccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHH--
Confidence                                                               124566666642  11   23588888  


Q ss_pred             CcccEEecccCCHHHHHHHHHHhhcc
Q 048723           84 RMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        84 R~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                      ||+.+|.|+.++.+++..|+..++..
T Consensus       186 R~~~~i~F~~~t~~el~~I~~~~l~~  211 (287)
T CHL00181        186 RIANHVDFPDYTPEELLQIAKIMLEE  211 (287)
T ss_pred             hCCceEEcCCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999988753

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.18  E-value=2.7e-11  Score=101.54  Aligned_cols=133  Identities=17%  Similarity=0.215  Sum_probs=85.3

Q ss_pred             HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCc--cccchHHHhcCC
Q 048723           11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYV--DKLDPALIRRGR   84 (236)
Q Consensus        11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~--~~ld~al~r~gR   84 (236)
                      +++..||+..+.+.++++.++.+  ..|+||+||||||+++++.+..+..  +.-.|-|.+.+..+  ..+|+..+|+ |
T Consensus        11 ~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr-~   89 (253)
T COG1117          11 RDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRR-R   89 (253)
T ss_pred             cceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHH-H
Confidence            45777889999999999999888  7899999999999999999876533  11134444444333  3567766664 8


Q ss_pred             cccEEecccCCHHHHHHHHH---Hhhccc-------------chhhHHHHHHHHH--cCCCCHHHHHHHHcccccccC
Q 048723           85 MDKRIEMSYCCFEAFMVLAK---SYLDIE-------------SHAFFAEINSLLA--ETNMASADVAENLMPKSDEED  144 (236)
Q Consensus        85 ~d~~i~~~~p~~~~~~~i~~---~~l~~~-------------~~~~~~~i~~ll~--~~gls~a~i~~~l~~~~~~~~  144 (236)
                      +.+++.-+.|-......-+-   +..+..             ...+.+++..-+.  ..++|++|-+++|++++.+-.
T Consensus        90 vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~  167 (253)
T COG1117          90 VGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVK  167 (253)
T ss_pred             heeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcC
Confidence            98888877775422211110   011111             1123344444443  458899999999987544433

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.18  E-value=9.9e-10  Score=95.49  Aligned_cols=103  Identities=21%  Similarity=0.269  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCc---ceEEECCCCCChHHHHHHHHhhcC---C----cc--------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKR---GYLLYGPPGTGKSTMIAAMANFLN---Y----DL--------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~r---g~lL~GPpGtGKTtlakaia~~l~---~----~~--------------   59 (236)
                      ++|++|.+.+... .........|+....   +++|+|||||||||++++||+.+.   .    .+              
T Consensus        13 ~vk~~i~~~~~~~-~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g   91 (261)
T TIGR02881        13 EVKALIKEIYAWI-QINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIG   91 (261)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhcc
Confidence            4667776654333 222344455665443   389999999999999999997641   0    00              


Q ss_pred             -------------------------------------------------cCceEEEEeecC-----ccccchHHHhcCCc
Q 048723           60 -------------------------------------------------VGEKGIVFTTNY-----VDKLDPALIRRGRM   85 (236)
Q Consensus        60 -------------------------------------------------~~~~~vi~ttN~-----~~~ld~al~r~gR~   85 (236)
                                                                       .+..+++++++.     ...++|++++  ||
T Consensus        92 ~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf  169 (261)
T TIGR02881        92 HTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRS--RF  169 (261)
T ss_pred             chHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHh--cc
Confidence                                                             112355555432     2246788888  89


Q ss_pred             ccEEecccCCHHHHHHHHHHhhcc
Q 048723           86 DKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        86 d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                      +..|.|+.++.+++..|++.++..
T Consensus       170 ~~~i~f~~~~~~el~~Il~~~~~~  193 (261)
T TIGR02881       170 PISIDFPDYTVEELMEIAERMVKE  193 (261)
T ss_pred             ceEEEECCCCHHHHHHHHHHHHHH
Confidence            889999999999999999887653

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.15  E-value=4.7e-10  Score=97.57  Aligned_cols=73  Identities=26%  Similarity=0.373  Sum_probs=65.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------   59 (236)
                      +||+||||.||||||+.||++++..+                                                      
T Consensus        55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI  134 (332)
T COG2255          55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDI  134 (332)
T ss_pred             EEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEE
Confidence            99999999999999999999999888                                                      


Q ss_pred             --------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 --------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 --------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                    ...--+|++|.+...|..+|+.  ||..+..+.+++.++...|+.+.-.
T Consensus       135 ~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~  195 (332)
T COG2255         135 IIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAK  195 (332)
T ss_pred             EEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHH
Confidence                          1255788999999999999998  9999999999999999999887643

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.13  E-value=3.6e-10  Score=102.27  Aligned_cols=71  Identities=32%  Similarity=0.449  Sum_probs=58.9

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------------   59 (236)
                      .+++|+|||||||||+++.||+..+..|                                                    
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v  128 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV  128 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh
Confidence            3499999999999999999999999998                                                    


Q ss_pred             -cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723           60 -VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS  105 (236)
Q Consensus        60 -~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~  105 (236)
                       .|.+++|++|  |+--.+.++++.++   +++.+...+.+....++++
T Consensus       129 E~G~iilIGATTENPsF~ln~ALlSR~---~vf~lk~L~~~di~~~l~r  174 (436)
T COG2256         129 ENGTIILIGATTENPSFELNPALLSRA---RVFELKPLSSEDIKKLLKR  174 (436)
T ss_pred             cCCeEEEEeccCCCCCeeecHHHhhhh---heeeeecCCHHHHHHHHHH
Confidence             4567777766  77778999999944   5578887888877777776

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.11  E-value=2.9e-09  Score=93.91  Aligned_cols=103  Identities=20%  Similarity=0.278  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCC---CcceEEECCCCCChHHHHHHHHhhcCC-------cc--------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAW---KRGYLLYGPPGTGKSTMIAAMANFLNY-------DL--------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~---~rg~lL~GPpGtGKTtlakaia~~l~~-------~~--------------   59 (236)
                      ++|++|.+.+. +...+......|+..   ..+++|+||||||||++|+++|..+..       ++              
T Consensus        29 ~vk~~i~e~~~-~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g  107 (284)
T TIGR02880        29 PVKTRIREIAA-LLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG  107 (284)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence            56666666443 345556677778764   335999999999999999888876631       11              


Q ss_pred             --------------------------------------------------cCceEEEEeecC--ccc---cchHHHhcCC
Q 048723           60 --------------------------------------------------VGEKGIVFTTNY--VDK---LDPALIRRGR   84 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~--~~~---ld~al~r~gR   84 (236)
                                                                        .+++++|++++.  ++.   ++|++++  |
T Consensus       108 ~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~s--R  185 (284)
T TIGR02880       108 HTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSS--R  185 (284)
T ss_pred             cchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHh--h
Confidence                                                              124566666543  333   4788888  9


Q ss_pred             cccEEecccCCHHHHHHHHHHhhcc
Q 048723           85 MDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        85 ~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                      |+..|.|+.++.+.+..|+..++..
T Consensus       186 ~~~~i~fp~l~~edl~~I~~~~l~~  210 (284)
T TIGR02880       186 VAHHVDFPDYSEAELLVIAGLMLKE  210 (284)
T ss_pred             CCcEEEeCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999988754

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.11  E-value=1.3e-10  Score=104.64  Aligned_cols=144  Identities=17%  Similarity=0.200  Sum_probs=91.3

Q ss_pred             HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723           13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIE   90 (236)
Q Consensus        13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~   90 (236)
                      +...|.+...++++++.+.+|  +.|.|||||||||++++||++..++   .|.|.+.+.++..+||.- |  .+.+++ 
T Consensus        11 v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~k-R--~ig~VF-   83 (352)
T COG3842          11 VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEK-R--PIGMVF-   83 (352)
T ss_pred             eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhh-c--ccceee-
Confidence            334456677889999999999  7899999999999999999999998   899999999999999863 3  454444 


Q ss_pred             ccc---CCHHHHHHHHHHh--hcccc-hhhHHHHHHHHHc-----------CCCCHHHHHHHHcccccccChHHH-HHHH
Q 048723           91 MSY---CCFEAFMVLAKSY--LDIES-HAFFAEINSLLAE-----------TNMASADVAENLMPKSDEEDADSC-LKNL  152 (236)
Q Consensus        91 ~~~---p~~~~~~~i~~~~--l~~~~-~~~~~~i~~ll~~-----------~gls~a~i~~~l~~~~~~~~~~~~-~~~~  152 (236)
                      .+|   |...-...+.--+  ..... .....++.++++.           ..+|+++-++...+++....+.+. +..=
T Consensus        84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP  163 (352)
T COG3842          84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP  163 (352)
T ss_pred             cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence            222   2222222221111  11111 1122344444443           256888888888887777777543 3333


Q ss_pred             HHHHHHHHHHH
Q 048723          153 IEALKVAKEEA  163 (236)
Q Consensus       153 ~~~L~~~~~~~  163 (236)
                      +++|..+..+.
T Consensus       164 lSaLD~kLR~~  174 (352)
T COG3842         164 LSALDAKLREQ  174 (352)
T ss_pred             ccchhHHHHHH
Confidence            44444444333

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.07  E-value=1.2e-10  Score=100.77  Aligned_cols=63  Identities=22%  Similarity=0.378  Sum_probs=53.9

Q ss_pred             hhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           16 FSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .|....++++++|.++.|  ++|+||||||||||+|+|++.+.+.   .|.|...+..+..+++..+.
T Consensus        11 ~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelA   75 (258)
T COG1120          11 GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELA   75 (258)
T ss_pred             EECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHh
Confidence            345677899999999999  8899999999999999999999988   78888888878877765543

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=7e-10  Score=106.88  Aligned_cols=110  Identities=22%  Similarity=0.247  Sum_probs=90.9

Q ss_pred             hCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------
Q 048723           26 IGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------   59 (236)
Q Consensus        26 ~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------   59 (236)
                      .+++....+||+|+|||||||+.++.|.+++.++                                              
T Consensus       426 ~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id  505 (953)
T KOG0736|consen  426 ALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGID  505 (953)
T ss_pred             hccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeec
Confidence            3455566699999999999999999999999998                                              


Q ss_pred             -------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhh
Q 048723           60 -------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAF  114 (236)
Q Consensus        60 -------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~  114 (236)
                                               ....+|+++++.++.+|+.+++  -|-..|.++.|+.++|..|++.|+.......
T Consensus       506 ~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~  583 (953)
T KOG0736|consen  506 QDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQ  583 (953)
T ss_pred             CCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccch
Confidence                                     2378999999999999998887  6778899999999999999999987555444


Q ss_pred             HHHHHHHHH-cCCCCHHHHHHHHc
Q 048723          115 FAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus       115 ~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      .....+++. +.||+.+++.....
T Consensus       584 ~v~~k~~a~~t~gfs~~~L~~l~~  607 (953)
T KOG0736|consen  584 DVNLKQLARKTSGFSFGDLEALVA  607 (953)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHhc
Confidence            445556665 88999999875544

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.06  E-value=1.1e-09  Score=98.33  Aligned_cols=102  Identities=19%  Similarity=0.216  Sum_probs=74.8

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------------c-
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------------V-   60 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------------~-   60 (236)
                      .+.++|+||||||||++++++|+.++..+                                                 . 
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~  130 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFR  130 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcc
Confidence            45699999999999999999999987765                                                 0 


Q ss_pred             ------------------CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHH-HHHHH
Q 048723           61 ------------------GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFA-EINSL  121 (236)
Q Consensus        61 ------------------~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~-~i~~l  121 (236)
                                        ....+|++||+...+++++++  ||+..+.++.++.+.+..++............. .+..+
T Consensus       131 ~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i  208 (328)
T PRK00080        131 LDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI  208 (328)
T ss_pred             eeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence                              125678899999999999988  888889999999999999988776543333222 23344


Q ss_pred             HHcCCCCHHHHHH
Q 048723          122 LAETNMASADVAE  134 (236)
Q Consensus       122 l~~~gls~a~i~~  134 (236)
                      +...+-+|..+..
T Consensus       209 a~~~~G~pR~a~~  221 (328)
T PRK00080        209 ARRSRGTPRIANR  221 (328)
T ss_pred             HHHcCCCchHHHH
Confidence            4444444443333

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.05  E-value=3.2e-09  Score=93.85  Aligned_cols=76  Identities=25%  Similarity=0.371  Sum_probs=63.9

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------   59 (236)
                      .+.++|+||||||||+++++||+.++.++                                                   
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~  109 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFR  109 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhh
Confidence            34599999999999999999999987665                                                   


Q ss_pred             -----------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 -----------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -----------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                       .....++++||+...+++++++  ||...+.+..++.++...+++....
T Consensus       110 ~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~  173 (305)
T TIGR00635       110 LDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAG  173 (305)
T ss_pred             eeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHH
Confidence                             0126788888999999999988  8888889999999998888887654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.03  E-value=4e-10  Score=101.09  Aligned_cols=117  Identities=14%  Similarity=0.184  Sum_probs=77.3

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE--ecccCCHH
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI--EMSYCCFE   97 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i--~~~~p~~~   97 (236)
                      .+.++++.+..|  +.|+||+||||||++++||+...++   +|-|.+..+++..++|.-+   .+-+++  +--||...
T Consensus        18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R---~iamVFQ~yALyPhmt   91 (338)
T COG3839          18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKR---GIAMVFQNYALYPHMT   91 (338)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHC---CEEEEeCCccccCCCc
Confidence            788899999999  8899999999999999999999999   8999999999999999753   353433  22244444


Q ss_pred             HHHHHHHHhh--cccchhhHHHHHHHHHc-----------CCCCHHHHHHHHcccccccC
Q 048723           98 AFMVLAKSYL--DIESHAFFAEINSLLAE-----------TNMASADVAENLMPKSDEED  144 (236)
Q Consensus        98 ~~~~i~~~~l--~~~~~~~~~~i~~ll~~-----------~gls~a~i~~~l~~~~~~~~  144 (236)
                      -+..|.-..-  +........++..+++.           ..+|++|-++..+.++....
T Consensus        92 V~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~  151 (338)
T COG3839          92 VYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK  151 (338)
T ss_pred             HHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence            3333322211  11222233333333332           46788887766665443333

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.99  E-value=1.1e-09  Score=93.30  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=80.3

Q ss_pred             HHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh--cCCcccEE
Q 048723           14 KKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR--RGRMDKRI   89 (236)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r--~gR~d~~i   89 (236)
                      ...+.+..+++++++.+++|  +.++||+|||||||+++|.+++.++   .+-|.+.+.++..++...+.  +.|+...+
T Consensus        15 ~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlF   91 (263)
T COG1127          15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLF   91 (263)
T ss_pred             eeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEe
Confidence            34457778999999999999  7789999999999999999999998   77777777778887763321  11787777


Q ss_pred             eccc-----CCHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCCHH
Q 048723           90 EMSY-----CCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASA  130 (236)
Q Consensus        90 ~~~~-----p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a  130 (236)
                      +++.     ..++.....++.|...........+.--++..|+.++
T Consensus        92 Q~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~  137 (263)
T COG1127          92 QQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA  137 (263)
T ss_pred             eccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChh
Confidence            6543     3355555556666665444444444444556677665

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.99  E-value=1e-09  Score=93.59  Aligned_cols=118  Identities=13%  Similarity=0.122  Sum_probs=73.4

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHH
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAF   99 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~   99 (236)
                      .++++++.+.+|  +-|+||+|||||||+++|++...+.   .|-|.+.+.......++-.+.+-+.+++.-++-+..-+
T Consensus        22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~   98 (252)
T COG1124          22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR   98 (252)
T ss_pred             hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence            899999999999  7899999999999999999999888   78888877655443322222224555555555444333


Q ss_pred             HHHHHHh----hcccchhhHHHHHHHHHcC------------CCCHHHHHHHHcccccc
Q 048723          100 MVLAKSY----LDIESHAFFAEINSLLAET------------NMASADVAENLMPKSDE  142 (236)
Q Consensus       100 ~~i~~~~----l~~~~~~~~~~i~~ll~~~------------gls~a~i~~~l~~~~~~  142 (236)
                      ..+....    ..........++..++...            .+|++|.++.+++++..
T Consensus        99 ~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~  157 (252)
T COG1124          99 RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI  157 (252)
T ss_pred             hhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence            3333322    1111112223355555544            45777777776654333

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.97  E-value=8.3e-10  Score=92.76  Aligned_cols=74  Identities=28%  Similarity=0.407  Sum_probs=55.3

Q ss_pred             HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc-cccchHHHhcCCcccE
Q 048723           12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV-DKLDPALIRRGRMDKR   88 (236)
Q Consensus        12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~-~~ld~al~r~gR~d~~   88 (236)
                      ++..+|+..++++++++.+.+|  ++++||+|||||||+++|...-.++   .|.|.+.+..+ ...+-..+|. ++.++
T Consensus         7 ~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~-~vGmV   82 (240)
T COG1126           7 NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRR-KVGMV   82 (240)
T ss_pred             eeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHH-hcCee
Confidence            3556678888999999999999  8899999999999999999998888   77777766333 2223333332 56555


Q ss_pred             E
Q 048723           89 I   89 (236)
Q Consensus        89 i   89 (236)
                      +
T Consensus        83 F   83 (240)
T COG1126          83 F   83 (240)
T ss_pred             c
Confidence            5

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=7.7e-09  Score=87.62  Aligned_cols=73  Identities=26%  Similarity=0.398  Sum_probs=64.4

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCC
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCC   95 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~   95 (236)
                      +++++.+++.++.|  ..|.||||||||||+.+|++.-++.++ ++-|++.+.++-.++|..+.  |....+-|++|.
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt-~G~I~~~GedI~~l~~~ERA--r~GifLafQ~P~   91 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT-EGEILFDGEDILELSPDERA--RAGIFLAFQYPV   91 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEe-cceEEECCcccccCCHhHHH--hcCCEEeecCCc
Confidence            48899999999999  789999999999999999999987754 47788999999999999887  777778888885

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.95  E-value=4.8e-09  Score=86.66  Aligned_cols=72  Identities=22%  Similarity=0.386  Sum_probs=57.8

Q ss_pred             HHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch---HHHhcCCcccE
Q 048723           14 KKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP---ALIRRGRMDKR   88 (236)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~---al~r~gR~d~~   88 (236)
                      ..|..++..+++++|.+++|  +.|+||+|+||||++|.|.....++   .+.+++...++..+..   +++|+ ++..+
T Consensus         9 k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR-~IGvV   84 (223)
T COG2884           9 KAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRR-QIGVV   84 (223)
T ss_pred             hhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhh-eeeeE
Confidence            34555677999999999999  7789999999999999999999998   8888888877777653   34553 66544


Q ss_pred             E
Q 048723           89 I   89 (236)
Q Consensus        89 i   89 (236)
                      +
T Consensus        85 F   85 (223)
T COG2884          85 F   85 (223)
T ss_pred             e
Confidence            4

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.93  E-value=2.9e-09  Score=90.54  Aligned_cols=66  Identities=21%  Similarity=0.354  Sum_probs=52.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch---HHHhcCCcccEE
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP---ALIRRGRMDKRI   89 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~---al~r~gR~d~~i   89 (236)
                      ..++++++.+.+|  +.++||+|||||||+..|++...++   .+.+++...++..++.   +..|+..+..++
T Consensus        19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvF   89 (226)
T COG1136          19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVF   89 (226)
T ss_pred             EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEEC
Confidence            5788999999999  8899999999999999999999887   7888888777777775   333433454444

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=98.92  E-value=1.1e-08  Score=97.45  Aligned_cols=43  Identities=26%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             eEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           63 KGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        63 ~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .++.+|||+++.++|++++  |+ ..|.|+.++.+++..+++.++.
T Consensus       235 rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~  277 (531)
T TIGR02902       235 RLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAE  277 (531)
T ss_pred             EEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHH
Confidence            3455667889999999988  76 5677777778888888887654

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.87  E-value=1.3e-08  Score=95.75  Aligned_cols=75  Identities=27%  Similarity=0.411  Sum_probs=58.2

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------   59 (236)
                      ++.+++|+|||||||||+|+++|+.++..                        +                          
T Consensus        35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~  114 (472)
T PRK14962         35 ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPM  114 (472)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChh
Confidence            44569999999999999999999987641                        1                          


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                    .+..++|++|+.+..+++++++  |+ ..+.|..++.+....+++...
T Consensus       115 ~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~  189 (472)
T PRK14962        115 EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVA  189 (472)
T ss_pred             cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHH
Confidence                                          2467777788888899999988  65 578888888777666666543

>PRK04195 replication factor C large subunit; Provisional

Probab=98.87  E-value=3.7e-08  Score=92.92  Aligned_cols=76  Identities=26%  Similarity=0.393  Sum_probs=59.3

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------   59 (236)
                      ++.++|+|||||||||++++||+.++.++                                                   
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~  118 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGG  118 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhH
Confidence            56799999999999999999999997655                                                   


Q ss_pred             ---------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ---------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ---------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                               .....+|+++|++..+++..+|  +....|.|+.|+...+..+++..+.
T Consensus       119 ~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~  174 (482)
T PRK04195        119 ARAILELIKKAKQPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICR  174 (482)
T ss_pred             HHHHHHHHHcCCCCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHH
Confidence                     1145577888988888773344  3447799999998888877777654

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.85  E-value=1.3e-09  Score=94.10  Aligned_cols=49  Identities=27%  Similarity=0.386  Sum_probs=40.0

Q ss_pred             hhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           16 FSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      .|.+..+++++++.+++|  +.|+||||+|||||+|+|.+.+.+.   .|-|.+
T Consensus        13 ~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~   63 (254)
T COG1121          13 SYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKI   63 (254)
T ss_pred             EECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEE
Confidence            344325899999999998  7899999999999999999999877   444443

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.83  E-value=8.1e-09  Score=83.95  Aligned_cols=61  Identities=25%  Similarity=0.435  Sum_probs=54.8

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+..++.++++...+|  ++++||+|||||||.|++|....++   .|.+.+-+.+...++|...|
T Consensus        14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~R   76 (223)
T COG4619          14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYR   76 (223)
T ss_pred             CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHH
Confidence            4567889999999999  8999999999999999999999998   89999999999999886665

>PRK06893 DNA replication initiation factor; Validated

Probab=98.83  E-value=1.9e-08  Score=85.92  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=56.5

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC---Cc--c-----------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN---YD--L-----------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~---~~--~-----------------------------------------------   59 (236)
                      +.++|+||||||||+|+++|++.+.   ..  +                                               
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~  119 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNR  119 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHH
Confidence            4479999999999999999998751   11  1                                               


Q ss_pred             ---cCceEEEEeec-Cccccc---hHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ---VGEKGIVFTTN-YVDKLD---PALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ---~~~~~vi~ttN-~~~~ld---~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                         .+..++++|+| .+..++   +.+.++.+.+..+.+..|+.+.+..+++....
T Consensus       120 ~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~  175 (229)
T PRK06893        120 IKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY  175 (229)
T ss_pred             HHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence               12334455554 455554   78888666678899999999999999887653

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.83  E-value=8.1e-08  Score=93.11  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=28.1

Q ss_pred             eecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           68 TTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        68 ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      |++.++.+++++++  |+. .+.|+.++.+.+..|++.++.
T Consensus       330 Tt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~  367 (615)
T TIGR02903       330 TTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAE  367 (615)
T ss_pred             ccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence            55678888998877  774 567777778888888887643

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.82  E-value=1.2e-08  Score=86.70  Aligned_cols=61  Identities=23%  Similarity=0.444  Sum_probs=52.1

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .....+.++++.++.|  +.++||+|+|||||+++|++..++.   .+-+++....+..+....+|
T Consensus        15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr   77 (258)
T COG3638          15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELR   77 (258)
T ss_pred             CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHH
Confidence            5566788999999999  8899999999999999999988887   77888888778887765554

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.82  E-value=1.1e-08  Score=93.24  Aligned_cols=60  Identities=22%  Similarity=0.378  Sum_probs=51.0

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      .....+++++|.+.+|  ++|+||+|||||||+++|++...+.   .|.|.+.+.++..+++..+
T Consensus         4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~   65 (363)
T TIGR01186         4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL   65 (363)
T ss_pred             CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHH
Confidence            4455788999999999  8899999999999999999999888   7878888877777777544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.81  E-value=3.1e-08  Score=92.74  Aligned_cols=74  Identities=18%  Similarity=0.359  Sum_probs=58.4

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCc------------------------c---------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L---------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~---------------------------   59 (236)
                      +..++|+|||||||||+++++|+.++..                        +                           
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~  119 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMG  119 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhc
Confidence            4458999999999999999999998752                        1                           


Q ss_pred             -----------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 -----------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 -----------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                   .+.++||++|+.++.|++.++.  |. ..+.|..++.+.....++..+
T Consensus       120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~  193 (484)
T PRK14956        120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLC  193 (484)
T ss_pred             CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHH
Confidence                                         3478889999999999999998  54 457777777766666655553

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.80  E-value=9.2e-08  Score=83.34  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=35.2

Q ss_pred             EEEEeecCc-----cccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           64 GIVFTTNYV-----DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        64 ~vi~ttN~~-----~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                      .+|+|+|..     ..+++++++  || ..+.+++|+.+.-..|+..+.+.
T Consensus       153 rvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~  200 (262)
T TIGR02640       153 RVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV  200 (262)
T ss_pred             EEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence            588999975     356889998  88 78999999998888898887643

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.80  E-value=9.6e-08  Score=82.03  Aligned_cols=97  Identities=21%  Similarity=0.285  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +.+|+.|.+++..|+.+.         +...+||+|++|||||++++++.+.+...-                       
T Consensus        33 e~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~  103 (249)
T PF05673_consen   33 ERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD  103 (249)
T ss_pred             HHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc
Confidence            356778888887776543         455599999999999999999999875432                       


Q ss_pred             -----------------------------------cCceEEEEeecCccccchHHHh---------------------cC
Q 048723           60 -----------------------------------VGEKGIVFTTNYVDKLDPALIR---------------------RG   83 (236)
Q Consensus        60 -----------------------------------~~~~~vi~ttN~~~~ld~al~r---------------------~g   83 (236)
                                                         ..+++|.+|+|+-+.++..+..                     .-
T Consensus       104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD  183 (249)
T PF05673_consen  104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD  183 (249)
T ss_pred             CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH
Confidence                                               3489999999977666653222                     11


Q ss_pred             CcccEEecccCCHHHHHHHHHHhhc
Q 048723           84 RMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        84 R~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ||...|.|..|+.+....|+..+..
T Consensus       184 RFGL~l~F~~~~q~~YL~IV~~~~~  208 (249)
T PF05673_consen  184 RFGLWLSFYPPDQEEYLAIVRHYAE  208 (249)
T ss_pred             hCCcEEEecCCCHHHHHHHHHHHHH
Confidence            8999999999999999999988874

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.79  E-value=5.4e-08  Score=90.06  Aligned_cols=74  Identities=30%  Similarity=0.425  Sum_probs=57.9

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------------   59 (236)
                      ..++|+|||||||||++++|++.++.++                                                    
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l  116 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV  116 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh
Confidence            4599999999999999999999888776                                                    


Q ss_pred             -cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 -VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                       .+.+++|++|  |....+++++++  |+ ..+.|..++.+....+++..+.
T Consensus       117 e~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~  165 (413)
T PRK13342        117 EDGTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALE  165 (413)
T ss_pred             hcCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHH
Confidence             2345555554  445678999988  66 6788888888888888877653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.79  E-value=2.7e-08  Score=93.91  Aligned_cols=106  Identities=20%  Similarity=0.238  Sum_probs=64.4

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcC--CcccEEecccCCH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRG--RMDKRIEMSYCCF   96 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~g--R~d~~i~~~~p~~   96 (236)
                      ..+++++|.+.+|  +.|+|++||||||++++|++.+.+.   .+.+++...+ -.+...-++..  ++-++|..++.+.
T Consensus       305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SL  380 (539)
T COG1123         305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSL  380 (539)
T ss_pred             eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcc-cccccchhhhhhhheEEEEeCccccc
Confidence            4578899999999  8899999999999999999999887   6666665544 22222212211  4545555555443


Q ss_pred             HHHHHH-------HHHhhcccchhhHHHHHHHHHcCCCCHH
Q 048723           97 EAFMVL-------AKSYLDIESHAFFAEINSLLAETNMASA  130 (236)
Q Consensus        97 ~~~~~i-------~~~~l~~~~~~~~~~i~~ll~~~gls~a  130 (236)
                      .-+..+       +..|...........+..+++..++++.
T Consensus       381 nPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~  421 (539)
T COG1123         381 NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE  421 (539)
T ss_pred             CccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH
Confidence            332222       2222222222233456666666666543

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=98.78  E-value=1.2e-08  Score=89.59  Aligned_cols=26  Identities=54%  Similarity=0.924  Sum_probs=23.9

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +.+|||||||||||+.++++|+++..
T Consensus        58 p~~LFyGPpGTGKTStalafar~L~~   83 (346)
T KOG0989|consen   58 PHYLFYGPPGTGKTSTALAFARALNC   83 (346)
T ss_pred             ceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence            44999999999999999999999976

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.76  E-value=5.6e-08  Score=88.52  Aligned_cols=72  Identities=15%  Similarity=0.119  Sum_probs=45.1

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhH-HHHHHHHHcCCCCHHHHHHHH
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFF-AEINSLLAETNMASADVAENL  136 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~ll~~~gls~a~i~~~l  136 (236)
                      ...+|++|++++.+++.++.  |. ..+.|..++.++...++...+...+.... ..+..++...+-++.++.+.+
T Consensus       149 ~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l  221 (363)
T PRK14961        149 HIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLL  221 (363)
T ss_pred             CeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            56778888888999988887  55 67899999988888777765443322222 223333444444555544444

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=6.6e-08  Score=92.90  Aligned_cols=100  Identities=17%  Similarity=0.285  Sum_probs=81.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------   59 (236)
                      ++|.||+|||||.|+++|+.++..+.                                                      
T Consensus       434 Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e  513 (952)
T KOG0735|consen  434 ILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNE  513 (952)
T ss_pred             EEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCccc
Confidence            99999999999999999999986554                                                      


Q ss_pred             -------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchh-
Q 048723           60 -------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHA-  113 (236)
Q Consensus        60 -------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~-  113 (236)
                                               ...+.+|++.+..++|+|-|..+++|+.++.++.|....|..|++..+...... 
T Consensus       514 ~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~  593 (952)
T KOG0735|consen  514 NGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDI  593 (952)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhh
Confidence                                     224688999999999999999999999999999999999999999887644322 


Q ss_pred             hHHHHHHHHH-cCCCCHHHHH
Q 048723          114 FFAEINSLLA-ETNMASADVA  133 (236)
Q Consensus       114 ~~~~i~~ll~-~~gls~a~i~  133 (236)
                      ...++.-+.. +.||.+-|+.
T Consensus       594 ~~~dLd~ls~~TEGy~~~DL~  614 (952)
T KOG0735|consen  594 TMDDLDFLSVKTEGYLATDLV  614 (952)
T ss_pred             hhHHHHHHHHhcCCccchhHH
Confidence            2233333333 7899888765

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.76  E-value=1.3e-08  Score=90.24  Aligned_cols=111  Identities=20%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             HHHhhh-ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           13 LKKFSE-GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        13 v~~~~~-~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                      +...+. ...+++++++.+++|  +.|.||||+||||++++|++...+.   .|-+.+.+.++..=+...++  ++.++.
T Consensus        10 l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~--~igy~~   84 (293)
T COG1131          10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRR--RIGYVP   84 (293)
T ss_pred             eEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHh--heEEEc
Confidence            334455 467899999999999  8899999999999999999999887   66666555443332444555  555544


Q ss_pred             ecc--cC--CHHHHHHHHHHhhcccchhhHHHHHHHHHcCCCC
Q 048723           90 EMS--YC--CFEAFMVLAKSYLDIESHAFFAEINSLLAETNMA  128 (236)
Q Consensus        90 ~~~--~p--~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls  128 (236)
                      +.+  +|  +..+...++..+.+.........+..+++..++.
T Consensus        85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~  127 (293)
T COG1131          85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLE  127 (293)
T ss_pred             cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCc
Confidence            332  22  2333333333333332222334555565554444

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.75  E-value=5.5e-08  Score=87.00  Aligned_cols=78  Identities=23%  Similarity=0.266  Sum_probs=63.6

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------   59 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------   59 (236)
                      +...+.++|.||||||||++++.||..++.++                                                
T Consensus        61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illl  140 (327)
T TIGR01650        61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCF  140 (327)
T ss_pred             HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEe
Confidence            44467799999999999999999999999887                                                


Q ss_pred             -----------------------------------cCceEEEEeecCcc------------ccchHHHhcCCcccEEecc
Q 048723           60 -----------------------------------VGEKGIVFTTNYVD------------KLDPALIRRGRMDKRIEMS   92 (236)
Q Consensus        60 -----------------------------------~~~~~vi~ttN~~~------------~ld~al~r~gR~d~~i~~~   92 (236)
                                                         .....+|+|+|...            .++.+++.  ||-..+.++
T Consensus       141 DEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~  218 (327)
T TIGR01650       141 DEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLN  218 (327)
T ss_pred             chhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCC
Confidence                                               11456788899865            35789999  997778999


Q ss_pred             cCCHHHHHHHHHHhh
Q 048723           93 YCCFEAFMVLAKSYL  107 (236)
Q Consensus        93 ~p~~~~~~~i~~~~l  107 (236)
                      ||+.+.-..|+....
T Consensus       219 Yp~~e~E~~Il~~~~  233 (327)
T TIGR01650       219 YLEHDNEAAIVLAKA  233 (327)
T ss_pred             CCCHHHHHHHHHhhc
Confidence            999988888876553

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.73  E-value=3.6e-08  Score=82.06  Aligned_cols=124  Identities=19%  Similarity=0.298  Sum_probs=84.8

Q ss_pred             HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch-----------
Q 048723           11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP-----------   77 (236)
Q Consensus        11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~-----------   77 (236)
                      +.+...+....++.++++.++.|  ..|+||+|+|||||+..+++.++.+   .|.+.+.+..+...+.           
T Consensus         5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILk   81 (252)
T COG4604           5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILK   81 (252)
T ss_pred             hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHH
Confidence            45667778888999999999988  7899999999999999999999998   6767666654444443           


Q ss_pred             ------------HHHhcCCcccEEecccCCHHHHHHHHHH--hhcccchhhHHHHHHHHHcCCCCHHHHHHHHccccccc
Q 048723           78 ------------ALIRRGRMDKRIEMSYCCFEAFMVLAKS--YLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEE  143 (236)
Q Consensus        78 ------------al~r~gR~d~~i~~~~p~~~~~~~i~~~--~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~  143 (236)
                                  .|...|||++  ..+.|+.+.+..+-..  |+...  .+   -.+.+.  .+|++|-++++.++..++
T Consensus        82 Q~N~i~~rlTV~dLv~FGRfPY--SqGRlt~eD~~~I~~aieyl~L~--~l---~dryLd--~LSGGQrQRAfIAMVlaQ  152 (252)
T COG4604          82 QENHINSRLTVRDLVGFGRFPY--SQGRLTKEDRRIINEAIEYLHLE--DL---SDRYLD--ELSGGQRQRAFIAMVLAQ  152 (252)
T ss_pred             hhchhhheeEHHHHhhcCCCcc--cCCCCchHHHHHHHHHHHHhccc--ch---HHHhHH--hcccchhhhhhhheeeec
Confidence                        3444666653  3456777777754332  22211  11   122333  688999998888755554


Q ss_pred             ChH
Q 048723          144 DAD  146 (236)
Q Consensus       144 ~~~  146 (236)
                      +.+
T Consensus       153 dTd  155 (252)
T COG4604         153 DTD  155 (252)
T ss_pred             cCc
Confidence            433

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.73  E-value=2.8e-08  Score=88.23  Aligned_cols=53  Identities=19%  Similarity=0.261  Sum_probs=42.9

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+...++..
T Consensus         5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~   59 (302)
T TIGR01188         5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVR   59 (302)
T ss_pred             CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccc
Confidence            345788899999988  7899999999999999999998877   6666665544443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.73  E-value=3.6e-08  Score=84.36  Aligned_cols=60  Identities=20%  Similarity=0.261  Sum_probs=46.0

Q ss_pred             HHHHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723            8 EIKKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus         8 ~i~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      .+...+...+....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-|.+...
T Consensus        22 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~   83 (236)
T cd03267          22 SLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGL   83 (236)
T ss_pred             hHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE
Confidence            34444444445566899999999888  8899999999999999999998776   565655543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.72  E-value=6.2e-08  Score=91.23  Aligned_cols=44  Identities=14%  Similarity=0.196  Sum_probs=33.6

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .+.+|++|+.++.+++.++.  |. ..+.|..++.+.....+.....
T Consensus       146 ~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~  189 (491)
T PRK14964        146 HVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAK  189 (491)
T ss_pred             CeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHH
Confidence            67888888999999998888  44 5588888887776666665544

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.72  E-value=5.7e-08  Score=84.79  Aligned_cols=65  Identities=14%  Similarity=0.324  Sum_probs=51.0

Q ss_pred             HHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           10 KKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        10 ~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .+++...+....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-+.+....+..+++
T Consensus        27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~   93 (269)
T cd03294          27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSR   93 (269)
T ss_pred             hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccCh
Confidence            345555666677899999999998  8899999999999999999998776   5666666655555544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.71  E-value=3.6e-08  Score=87.77  Aligned_cols=67  Identities=21%  Similarity=0.249  Sum_probs=49.7

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccE
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                      |.+...++++++.+++|  +.|+||+|+|||||+++|++.+.++   .|-+.+...++...+...++  ++.+.
T Consensus        17 ~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~--~ig~v   85 (306)
T PRK13537         17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQ--RVGVV   85 (306)
T ss_pred             ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHh--cEEEE
Confidence            34456889999999998  8899999999999999999999877   66666655555444444333  44433

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.71  E-value=7.7e-08  Score=92.86  Aligned_cols=103  Identities=21%  Similarity=0.243  Sum_probs=70.1

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------   59 (236)
                      ++..+||+||||+||||+++++|+.++..                        +                          
T Consensus        36 l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~  115 (702)
T PRK14960         36 LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT  115 (702)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhh
Confidence            34569999999999999999999998641                        1                          


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                                                    .+.+.||++|+++..+++.+++  |. ..+.|..++.+.....+...+..
T Consensus       116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~k  192 (702)
T PRK14960        116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEK  192 (702)
T ss_pred             cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHH
Confidence                                          2357888889999999998887  55 66888888887777666655543


Q ss_pred             cchhhH-HHHHHHHHcCCCCHHHHHHH
Q 048723          110 ESHAFF-AEINSLLAETNMASADVAEN  135 (236)
Q Consensus       110 ~~~~~~-~~i~~ll~~~gls~a~i~~~  135 (236)
                      ...... ..+..++...+-+..++.+.
T Consensus       193 EgI~id~eAL~~IA~~S~GdLRdALnL  219 (702)
T PRK14960        193 EQIAADQDAIWQIAESAQGSLRDALSL  219 (702)
T ss_pred             cCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            322222 22333444444454444433

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.71  E-value=1.4e-07  Score=92.18  Aligned_cols=76  Identities=18%  Similarity=0.270  Sum_probs=60.5

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------   59 (236)
                      +...|||+||+|+||||++++|++.+++.                        +                          
T Consensus        37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~  116 (830)
T PRK07003         37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPV  116 (830)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccc
Confidence            34558999999999999999999988642                        1                          


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                                    ...+.||++||+++.|++.++.  |. ..|.|..++.++....++..+.
T Consensus       117 ~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~  192 (830)
T PRK07003        117 DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILG  192 (830)
T ss_pred             cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHH
Confidence                                          2368999999999999999988  44 6688888888777766666554

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.71  E-value=2.5e-08  Score=78.05  Aligned_cols=27  Identities=44%  Similarity=0.752  Sum_probs=25.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +++|+||||||||++++.+|..++.++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~   27 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPV   27 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcce
Confidence            389999999999999999999998777

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.71  E-value=4.7e-08  Score=82.51  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=42.0

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+.
T Consensus        11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~   65 (220)
T cd03265          11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVV   65 (220)
T ss_pred             CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecC
Confidence            3445788999999888  8899999999999999999988766   565655544443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.70  E-value=5.4e-08  Score=83.42  Aligned_cols=56  Identities=21%  Similarity=0.439  Sum_probs=44.4

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|.|.+....+..+++.
T Consensus        14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~   71 (242)
T cd03295          14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPV   71 (242)
T ss_pred             ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChH
Confidence            44788899999888  8899999999999999999998766   56666665555555543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.69  E-value=1.6e-08  Score=86.70  Aligned_cols=53  Identities=25%  Similarity=0.382  Sum_probs=45.6

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      |....+++++++.+.+|  ++|+||+|||||||++.||+...+.   .|.|.+.+..+
T Consensus        13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v   67 (248)
T COG1116          13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV   67 (248)
T ss_pred             eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc
Confidence            44467899999999999  8999999999999999999999988   77777766544

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.69  E-value=2.8e-08  Score=90.26  Aligned_cols=58  Identities=24%  Similarity=0.341  Sum_probs=47.7

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .+...+.++++.+..|  +.|+||+|||||||+++||+...++   .|-|.+....+..+++.
T Consensus        15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~   74 (353)
T TIGR03265        15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQ   74 (353)
T ss_pred             CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence            3344678888888888  8899999999999999999999877   77777777777667664

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.69  E-value=5.3e-08  Score=81.55  Aligned_cols=56  Identities=25%  Similarity=0.417  Sum_probs=44.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+...++.
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~   71 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLK   71 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHH
Confidence            45788999999888  8899999999999999999998776   56666655544444443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=5.4e-08  Score=87.49  Aligned_cols=54  Identities=20%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ..+.++++.+.+|  +.|+||+|||||||+++|++.+.+.   .|-|.+...++..++.
T Consensus        29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~   84 (327)
T PRK11308         29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCH
Confidence            4788999999998  8899999999999999999998766   6667777766666664

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.69  E-value=3.6e-08  Score=86.75  Aligned_cols=66  Identities=27%  Similarity=0.274  Sum_probs=52.0

Q ss_pred             HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec---CccccchHHHh
Q 048723           13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN---YVDKLDPALIR   81 (236)
Q Consensus        13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN---~~~~ld~al~r   81 (236)
                      +...+.....+.++++.++.|  +.|.||+|+||||++++||+...++   .|.|++...   +...++..-++
T Consensus         8 ~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~   78 (345)
T COG1118           8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRK   78 (345)
T ss_pred             hhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcc
Confidence            344455556677899999999  8899999999999999999999999   888888776   55565554333

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.69  E-value=1.3e-07  Score=89.47  Aligned_cols=45  Identities=22%  Similarity=0.331  Sum_probs=35.4

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                      ..++|++|+.++.+++.++.  |. ..+.|..++.++...+++..+..
T Consensus       158 ~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~  202 (507)
T PRK06645        158 HIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQ  202 (507)
T ss_pred             CEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHH
Confidence            67888888999999999888  55 56888888888877777766543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.68  E-value=6.4e-08  Score=82.24  Aligned_cols=56  Identities=23%  Similarity=0.363  Sum_probs=43.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-+.+........++
T Consensus        12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~   69 (232)
T cd03218          12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPM   69 (232)
T ss_pred             CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCH
Confidence            345788999999888  8899999999999999999998776   5555555544444444

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.68  E-value=1.5e-07  Score=83.48  Aligned_cols=73  Identities=22%  Similarity=0.252  Sum_probs=58.4

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------   59 (236)
                      +..++|+||||+|||++++++++.++.++                                                   
T Consensus        43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~  122 (316)
T PHA02544         43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLR  122 (316)
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHH
Confidence            34477799999999999999998765432                                                   


Q ss_pred             ------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           60 ------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        60 ------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                            .+...+|+++|.++.+++++++  |+ ..+.++.|+.+.+..++..+
T Consensus       123 ~~le~~~~~~~~Ilt~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~  172 (316)
T PHA02544        123 SFMEAYSKNCSFIITANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQM  172 (316)
T ss_pred             HHHHhcCCCceEEEEcCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence                  2367889999999999999988  66 57889999988887666544

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.68  E-value=2.7e-08  Score=84.48  Aligned_cols=61  Identities=23%  Similarity=0.460  Sum_probs=47.9

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      +.+..++.++++.+++|  +.|+||+|+|||||+++|++...+.   .|-+.+....+..+++..+
T Consensus        17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~   79 (225)
T PRK10247         17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIY   79 (225)
T ss_pred             eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHH
Confidence            34445889999999999  8899999999999999999988766   6666666666666665433

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.68  E-value=6.4e-08  Score=81.45  Aligned_cols=55  Identities=18%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ..++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|.|.+....+..+++
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~   73 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSE   73 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcch
Confidence            45789999999888  8899999999999999999998776   6667666655555553

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.68  E-value=7.7e-08  Score=80.97  Aligned_cols=51  Identities=27%  Similarity=0.275  Sum_probs=41.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      .++.++++.+.+|  +.|+||+|||||||+++|++.+.+.   .|-|.+....+..
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~   71 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK   71 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEccc
Confidence            5789999998888  8899999999999999999998766   5556555544443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.67  E-value=7.6e-08  Score=81.11  Aligned_cols=51  Identities=18%  Similarity=0.228  Sum_probs=41.9

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      ..+++++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+....+.
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~   67 (220)
T cd03263          15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIR   67 (220)
T ss_pred             ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecc
Confidence            45789999999988  8899999999999999999998776   566666554443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=4e-08  Score=89.32  Aligned_cols=57  Identities=28%  Similarity=0.410  Sum_probs=48.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ....++++++.+.+|  +.|+||||||||||+++||+...+.   .|-|.+....+..+++.
T Consensus        16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~   74 (356)
T PRK11650         16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPA   74 (356)
T ss_pred             CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence            345688899999888  7899999999999999999998877   78888877777777764

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.67  E-value=8.8e-07  Score=81.56  Aligned_cols=80  Identities=20%  Similarity=0.321  Sum_probs=61.9

Q ss_pred             HhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCc-----------------------c--------------------
Q 048723           23 CAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD-----------------------L--------------------   59 (236)
Q Consensus        23 ~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~-----------------------~--------------------   59 (236)
                      +...+...+.++||+||||+|||++++++|..+...                       +                    
T Consensus        28 ~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~  107 (394)
T PRK07940         28 VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVT  107 (394)
T ss_pred             ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHH
Confidence            344455577889999999999999999999876432                       0                    


Q ss_pred             -------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHH
Q 048723           60 -------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVL  102 (236)
Q Consensus        60 -------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i  102 (236)
                                                           ...+++|++|++++.++|.+++  |. ..+.|+.|+.+.....
T Consensus       108 ~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~  184 (394)
T PRK07940        108 IAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEV  184 (394)
T ss_pred             HHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHH
Confidence                                                 2367777777779999999998  54 6789999998887766


Q ss_pred             HHH
Q 048723          103 AKS  105 (236)
Q Consensus       103 ~~~  105 (236)
                      +..
T Consensus       185 L~~  187 (394)
T PRK07940        185 LVR  187 (394)
T ss_pred             HHH
Confidence            653

>PRK06620 hypothetical protein; Validated

Probab=98.67  E-value=1.7e-07  Score=79.41  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------cCceEEEEeecCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------VGEKGIVFTTNYV   72 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------~~~~~vi~ttN~~   72 (236)
                      +.++|+||||||||+|++++++..+..+                                       .|..+++.++..+
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p  124 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKS  124 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence            6699999999999999999998765433                                       3444555555444


Q ss_pred             cc--cchHHHhcCCc--ccEEecccCCHHHHHHHHHHhhc
Q 048723           73 DK--LDPALIRRGRM--DKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        73 ~~--ld~al~r~gR~--d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ..  + |+++.  |+  ..++.+..|+.+.+..+++....
T Consensus       125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~  161 (214)
T PRK06620        125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFS  161 (214)
T ss_pred             cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence            44  5 67776  55  34788999999988888776643

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.67  E-value=7.8e-08  Score=80.60  Aligned_cols=54  Identities=26%  Similarity=0.316  Sum_probs=42.7

Q ss_pred             hhHHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           20 KEYCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        20 ~~~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ..++.++++.+.+| +.|+||||+|||||+++|++.+.+.   .|-|.+....+...+
T Consensus        13 ~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~   67 (211)
T cd03264          13 KRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQP   67 (211)
T ss_pred             EEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccch
Confidence            34788888888888 7789999999999999999998776   666666665554444

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.66  E-value=7.2e-08  Score=81.09  Aligned_cols=53  Identities=21%  Similarity=0.300  Sum_probs=43.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+...++..++
T Consensus        17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~   71 (216)
T TIGR00960        17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLR   71 (216)
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcC
Confidence            4788899999888  8899999999999999999998776   666666655554444

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.66  E-value=9.8e-08  Score=92.02  Aligned_cols=72  Identities=11%  Similarity=0.051  Sum_probs=45.8

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHH-HHHHHHHcCCCCHHHHHHH
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFA-EINSLLAETNMASADVAEN  135 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~-~i~~ll~~~gls~a~i~~~  135 (236)
                      +.++||++||+++.|.+.++.+  . ..+.|..++.+.....++..+......... .+..++...+=++.+..+.
T Consensus       153 ~~v~FILaTtep~kLlpTIrSR--C-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL  225 (700)
T PRK12323        153 EHVKFILATTDPQKIPVTVLSR--C-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL  225 (700)
T ss_pred             CCceEEEEeCChHhhhhHHHHH--H-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            3789999999999999999984  3 568888888887777666555433222222 2233344444455544443

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=8.5e-08  Score=88.42  Aligned_cols=60  Identities=18%  Similarity=0.277  Sum_probs=48.6

Q ss_pred             hhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           16 FSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .+.....+.+++|.+.+|  ++|+||||||||||+++|++.+.+.   .|.|.+...++..+++.
T Consensus        37 ~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~   98 (400)
T PRK10070         37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDA   98 (400)
T ss_pred             hcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHH
Confidence            334445688899999988  8899999999999999999999877   67777777666666654

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.66  E-value=1.4e-07  Score=88.24  Aligned_cols=125  Identities=17%  Similarity=0.229  Sum_probs=75.0

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCC-----cc-----------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNY-----DL-----------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~-----~~-----------------------------------------------   59 (236)
                      ++++|+||||||||+|+++|++.+..     .+                                               
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~  228 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER  228 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH
Confidence            45999999999999999999998732     22                                               


Q ss_pred             --------------cCceEEEEeecCccc---cchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhcccchhhHHHH-H
Q 048723           60 --------------VGEKGIVFTTNYVDK---LDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLDIESHAFFAEI-N  119 (236)
Q Consensus        60 --------------~~~~~vi~ttN~~~~---ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i-~  119 (236)
                                    .+..+++.++..+..   ++++++.  |+.  ..+.+..|+.+.+..|++.........+..++ .
T Consensus       229 ~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~  306 (450)
T PRK00149        229 TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLE  306 (450)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence                          123344444444444   6678877  664  67899999999999999987654333333333 3


Q ss_pred             HHHHcCCCCHHHHHHHHcc---cccccChHHHHHHHHHHHHH
Q 048723          120 SLLAETNMASADVAENLMP---KSDEEDADSCLKNLIEALKV  158 (236)
Q Consensus       120 ~ll~~~gls~a~i~~~l~~---~~~~~~~~~~~~~~~~~L~~  158 (236)
                      .++....=+..++...+..   .+......+++..+...|..
T Consensus       307 ~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~  348 (450)
T PRK00149        307 FIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD  348 (450)
T ss_pred             HHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence            3333444444544433332   12122233444444444443

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.65  E-value=4.3e-08  Score=89.71  Aligned_cols=57  Identities=26%  Similarity=0.465  Sum_probs=48.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ...++.++++.+.+|  ++|+||+|||||||+++||+...+.   .|-|.+..+.+..+++.
T Consensus        26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~   84 (375)
T PRK09452         26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE   84 (375)
T ss_pred             CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence            334677888888888  8899999999999999999999887   78888888777777764

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.65  E-value=3e-08  Score=82.66  Aligned_cols=53  Identities=19%  Similarity=0.374  Sum_probs=42.9

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      ....++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+....+.
T Consensus         9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~   63 (206)
T TIGR03608         9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETP   63 (206)
T ss_pred             CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcc
Confidence            3445788999999888  8899999999999999999998776   566666655543

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.65  E-value=1.4e-07  Score=89.61  Aligned_cols=76  Identities=21%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------   59 (236)
                      ++..+||+||||+||||+++++|+.++..                        +                          
T Consensus        37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~  116 (509)
T PRK14958         37 LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPT  116 (509)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccc
Confidence            34569999999999999999999998642                        1                          


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                                    ...+.||++|++++.+++.++.  |. ..+.|..++.......+...+.
T Consensus       117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~  192 (509)
T PRK14958        117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLK  192 (509)
T ss_pred             cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHH
Confidence                                          2367888888999999998887  43 5567777777665555444443

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=4.8e-08  Score=88.64  Aligned_cols=58  Identities=22%  Similarity=0.306  Sum_probs=47.6

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .....+.++++.+..|  ++|+||+|||||||+++|++...++   .|.|.+....+..+++.
T Consensus        17 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~   76 (351)
T PRK11432         17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ   76 (351)
T ss_pred             CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence            3344688889999888  8899999999999999999999888   77777777766666653

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.64  E-value=2.1e-07  Score=90.45  Aligned_cols=105  Identities=21%  Similarity=0.232  Sum_probs=70.0

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c-------------------------
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------   59 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------   59 (236)
                      .++.++||+||+|+||||++++||+.+++.                        +                         
T Consensus        36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P  115 (709)
T PRK08691         36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP  115 (709)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhh
Confidence            345669999999999999999999987542                        0                         


Q ss_pred             -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                                     .+.+.||++|+++..+++.++.  |. ..|.|..++.+.....+...+.
T Consensus       116 ~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~  192 (709)
T PRK08691        116 TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLD  192 (709)
T ss_pred             hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHH
Confidence                                           2367888899999999998886  55 5677778888777767666555


Q ss_pred             ccchhhHH-HHHHHHHcCCCCHHHHHHHH
Q 048723          109 IESHAFFA-EINSLLAETNMASADVAENL  136 (236)
Q Consensus       109 ~~~~~~~~-~i~~ll~~~gls~a~i~~~l  136 (236)
                      ........ .+..++...+-+..++.+.+
T Consensus       193 kEgi~id~eAL~~Ia~~A~GslRdAlnLL  221 (709)
T PRK08691        193 SEKIAYEPPALQLLGRAAAGSMRDALSLL  221 (709)
T ss_pred             HcCCCcCHHHHHHHHHHhCCCHHHHHHHH
Confidence            43322221 22333333344444444333

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.64  E-value=9.1e-08  Score=81.50  Aligned_cols=58  Identities=24%  Similarity=0.411  Sum_probs=45.7

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ....++.++++.+.+|  +.|+||+|||||||+++|++.+.+.   .|-|.+....+...++.
T Consensus        11 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~   70 (236)
T cd03219          11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPH   70 (236)
T ss_pred             CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHH
Confidence            3345788999999888  8899999999999999999998766   56666666555555543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.63  E-value=5.6e-08  Score=88.55  Aligned_cols=56  Identities=21%  Similarity=0.370  Sum_probs=46.7

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCc--eEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGE--KGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~--~~vi~ttN~~~~ld~   77 (236)
                      ....+.++++.+.+|  +.|+||||||||||+++|++...++   .  |-|.+....+..+++
T Consensus        17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~   76 (362)
T TIGR03258        17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPP   76 (362)
T ss_pred             CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCH
Confidence            344688889999888  8899999999999999999998877   6  777777776666665

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.63  E-value=1.4e-07  Score=79.16  Aligned_cols=55  Identities=20%  Similarity=0.352  Sum_probs=44.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-+.+...++..+++
T Consensus        15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~   71 (214)
T TIGR02673        15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRG   71 (214)
T ss_pred             ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCH
Confidence            45789999999988  8899999999999999999998766   6666666655555543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.63  E-value=7.2e-08  Score=85.56  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=43.5

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      .+...+.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+.+.++..
T Consensus        13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~   68 (301)
T TIGR03522        13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQ   68 (301)
T ss_pred             CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccc
Confidence            3445788899999998  8899999999999999999998877   6666665555444

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.63  E-value=7.4e-08  Score=82.25  Aligned_cols=57  Identities=21%  Similarity=0.327  Sum_probs=44.7

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      +..++.++++.+.+|  +.|+||+|+|||||+++|++...+.   .|.|.+....+...++.
T Consensus        13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~   71 (236)
T TIGR03864        13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRA   71 (236)
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChh
Confidence            445788899998888  8899999999999999999998766   56666655555444443

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.63  E-value=1.1e-07  Score=78.54  Aligned_cols=51  Identities=25%  Similarity=0.405  Sum_probs=41.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++...+.   .|-|.+...++
T Consensus         4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~   56 (190)
T TIGR01166         4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPL   56 (190)
T ss_pred             ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEc
Confidence            445788999999888  8899999999999999999998776   56666655444

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.63  E-value=2.1e-07  Score=89.44  Aligned_cols=45  Identities=13%  Similarity=0.129  Sum_probs=34.7

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ..++||++|+.++.+.+.++.  | ...+.|..++.+.....+..++.
T Consensus       147 ~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~  191 (584)
T PRK14952        147 EHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICE  191 (584)
T ss_pred             CCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHH
Confidence            378888888999999999888  4 36788888888777766665544

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.63  E-value=7.3e-08  Score=87.08  Aligned_cols=57  Identities=23%  Similarity=0.245  Sum_probs=45.9

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .....+++++|.+.+|  +.|+||||+|||||+++|++.+.+.   .|-+.+.+.++...+.
T Consensus        52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~  110 (340)
T PRK13536         52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARAR  110 (340)
T ss_pred             CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchH
Confidence            3445788999999988  8899999999999999999999877   6666666665554443

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.62  E-value=9e-08  Score=82.09  Aligned_cols=60  Identities=30%  Similarity=0.533  Sum_probs=46.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|.|.+...++..+++..++
T Consensus        15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~   76 (241)
T PRK14250         15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLR   76 (241)
T ss_pred             CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhh
Confidence            345788999999888  8899999999999999999998776   66666666555555544333

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.62  E-value=1.2e-07  Score=85.85  Aligned_cols=55  Identities=18%  Similarity=0.280  Sum_probs=47.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .+++++++.+.+|  +.|+||||+|||||+++|++...++   .|-|.+.+.++..+++.
T Consensus        19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~   75 (343)
T TIGR02314        19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNS   75 (343)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence            4789999999988  8899999999999999999999887   77788877777777654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.62  E-value=9.2e-08  Score=80.27  Aligned_cols=56  Identities=21%  Similarity=0.318  Sum_probs=44.3

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+...+
T Consensus        11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~   68 (213)
T cd03259          11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVP   68 (213)
T ss_pred             CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCc
Confidence            3445789999999988  8899999999999999999998776   666666555444433

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.62  E-value=2.3e-07  Score=88.99  Aligned_cols=76  Identities=24%  Similarity=0.360  Sum_probs=59.0

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------   59 (236)
                      +++.|||+||+|||||++++.+|+.++..                        +                          
T Consensus        37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~  116 (559)
T PRK05563         37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPS  116 (559)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcc
Confidence            45669999999999999999999987521                        1                          


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                                    ...+++|++|+.++.+++.+++  |. ..+.|..++..+....+...+.
T Consensus       117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~  192 (559)
T PRK05563        117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILD  192 (559)
T ss_pred             cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHH
Confidence                                          2367888888889999999887  54 4678888888777766665543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.61  E-value=1.1e-07  Score=84.48  Aligned_cols=52  Identities=27%  Similarity=0.382  Sum_probs=42.0

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .+..+++++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-+.+...++
T Consensus        15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~   68 (303)
T TIGR01288        15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPV   68 (303)
T ss_pred             CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEC
Confidence            3445789999999998  8899999999999999999998776   56565554443

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.61  E-value=6.3e-08  Score=88.42  Aligned_cols=56  Identities=20%  Similarity=0.387  Sum_probs=45.6

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      +..++.++++.+.+|  +.|+||+|||||||+++|++.+.++   .|.|.+....+..+++
T Consensus        15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~   72 (369)
T PRK11000         15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPP   72 (369)
T ss_pred             CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence            345788899999888  8899999999999999999998877   6777776665555555

>PHA02244 ATPase-like protein

Probab=98.61  E-value=2.3e-07  Score=84.30  Aligned_cols=63  Identities=25%  Similarity=0.379  Sum_probs=52.4

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------   59 (236)
                      +..++|+||||||||+++++|+..++.+|                                                   
T Consensus       119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~  198 (383)
T PHA02244        119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALI  198 (383)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHHHH
Confidence            34599999999999999999999888665                                                   


Q ss_pred             --------------------cCceEEEEeecCc-----------cccchHHHhcCCcccEEecccCCH
Q 048723           60 --------------------VGEKGIVFTTNYV-----------DKLDPALIRRGRMDKRIEMSYCCF   96 (236)
Q Consensus        60 --------------------~~~~~vi~ttN~~-----------~~ld~al~r~gR~d~~i~~~~p~~   96 (236)
                                          ..+..+|+|+|..           ..++++++.  || ..|+|.||..
T Consensus       199 ~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~  263 (383)
T PHA02244        199 IINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK  263 (383)
T ss_pred             HHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence                                1256888999973           568999999  89 6899999984

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.61  E-value=2e-07  Score=85.99  Aligned_cols=102  Identities=17%  Similarity=0.252  Sum_probs=65.7

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC-----Ccc-----------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN-----YDL-----------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~-----~~~-----------------------------------------------   59 (236)
                      .+++|+||||+|||+|+++|++.+.     ..+                                               
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~  216 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER  216 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence            3589999999999999999998762     222                                               


Q ss_pred             -------------cCceEEEEeec-Cccc---cchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhcccchhhHHHH-H
Q 048723           60 -------------VGEKGIVFTTN-YVDK---LDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLDIESHAFFAEI-N  119 (236)
Q Consensus        60 -------------~~~~~vi~ttN-~~~~---ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i-~  119 (236)
                                   ..+..+++++| .+..   +++.++.  |+.  ..+.+..|+.+.+..|++.........+..++ .
T Consensus       217 ~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~  294 (405)
T TIGR00362       217 TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLE  294 (405)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence                         11233445554 4443   5577776  664  57899999999999999987654433333333 3


Q ss_pred             HHHHcCCCCHHHHHHH
Q 048723          120 SLLAETNMASADVAEN  135 (236)
Q Consensus       120 ~ll~~~gls~a~i~~~  135 (236)
                      .++....-+..++...
T Consensus       295 ~ia~~~~~~~r~l~~~  310 (405)
T TIGR00362       295 FIAKNIRSNVRELEGA  310 (405)
T ss_pred             HHHHhcCCCHHHHHHH
Confidence            3334444444544433

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PLN03025 replication factor C subunit; Provisional

Probab=98.60  E-value=2.7e-07  Score=82.54  Aligned_cols=73  Identities=23%  Similarity=0.300  Sum_probs=55.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC-Cc----c------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN-YD----L------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~-~~----~------------------------------------------------   59 (236)
                      .++|+|||||||||+++++|+.+. ..    +                                                
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a  115 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA  115 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH
Confidence            499999999999999999999862 11    1                                                


Q ss_pred             -----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 -----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                 .....+++++|....+.++++.  |. ..+.|..|+.++....++....
T Consensus       116 q~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~  172 (319)
T PLN03025        116 QQALRRTMEIYSNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVE  172 (319)
T ss_pred             HHHHHHHHhcccCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHH
Confidence                       1245677888888888888887  43 5688888888777766665443

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.59  E-value=3.5e-07  Score=90.86  Aligned_cols=76  Identities=18%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc-------c-------------------------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD-------L-------------------------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~-------~-------------------------------------------   59 (236)
                      ++..|||+|||||||||++++||+.++..       +                                           
T Consensus        37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~  116 (944)
T PRK14949         37 LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS  116 (944)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence            45558999999999999999999998653       0                                           


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                                    .+.+.||++|+.+..|.+.++.  |. ..+.|..++.+.....++..+.
T Consensus       117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~  192 (944)
T PRK14949        117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILT  192 (944)
T ss_pred             cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHH
Confidence                                          2357788889999999999888  44 6688888888887777776554

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.59  E-value=1.7e-07  Score=81.74  Aligned_cols=50  Identities=18%  Similarity=0.345  Sum_probs=41.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+....+.
T Consensus        27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~   78 (267)
T PRK15112         27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLH   78 (267)
T ss_pred             ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECC
Confidence            4789999999888  8899999999999999999998776   565655554443

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.59  E-value=8.8e-08  Score=80.34  Aligned_cols=56  Identities=21%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ....++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .+-+.+..+.+...+
T Consensus        11 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~   68 (213)
T cd03301          11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLP   68 (213)
T ss_pred             CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCC
Confidence            3445788999999888  8899999999999999999998766   566666655544443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.59  E-value=3.8e-08  Score=79.64  Aligned_cols=55  Identities=24%  Similarity=0.349  Sum_probs=45.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++...+.   .+-+.+...++...++
T Consensus        13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~   69 (163)
T cd03216          13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASP   69 (163)
T ss_pred             eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCH
Confidence            34788889988888  8899999999999999999998776   6667776666666654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.59  E-value=7.3e-08  Score=81.83  Aligned_cols=57  Identities=19%  Similarity=0.331  Sum_probs=45.4

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ...++.++++.+.+|  ++|+||||||||||+++|++.+.+.   .|-|.+.......+++.
T Consensus        12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~   70 (230)
T TIGR03410        12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH   70 (230)
T ss_pred             CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHH
Confidence            345788999999988  8999999999999999999998876   56666665555555543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.58  E-value=3.2e-07  Score=82.56  Aligned_cols=72  Identities=15%  Similarity=0.175  Sum_probs=46.2

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhH-HHHHHHHHcCCCCHHHHHHHH
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFF-AEINSLLAETNMASADVAENL  136 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~ll~~~gls~a~i~~~l  136 (236)
                      ..++|+++++++.+.+.+++  |. ..+.|..|+..+...++..++...+.... ..+..++...+-++..+.+.+
T Consensus       147 ~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~l  219 (355)
T TIGR02397       147 HVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLL  219 (355)
T ss_pred             ceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence            56777888888888888887  55 57888888888888777766543332222 223334444455555554443

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=2.2e-07  Score=83.54  Aligned_cols=61  Identities=21%  Similarity=0.318  Sum_probs=47.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc-cCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL-VGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~-~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .++++++|.+.+|  +.|+||||||||||+++|++.+..+- ...|.|.+.+.++..++...++
T Consensus        21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~   84 (326)
T PRK11022         21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERR   84 (326)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHH
Confidence            4789999999999  88999999999999999999986420 0156666777777777665443

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.58  E-value=1.4e-07  Score=84.96  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .++.++++.+.+|  +.|+||+|||||||+++|++.+.+.   .|-|.+.+.++..++..
T Consensus        35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~   91 (331)
T PRK15079         35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDD   91 (331)
T ss_pred             EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHH
Confidence            4788999999999  8899999999999999999998776   67777777777777654

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.58  E-value=1.4e-07  Score=79.00  Aligned_cols=50  Identities=24%  Similarity=0.373  Sum_probs=40.6

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ...++.++++.+.+|  +.|+||+|||||||+++|++.+.+.   .+-|.+....
T Consensus        12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~   63 (210)
T cd03269          12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKP   63 (210)
T ss_pred             CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCc
Confidence            345788889998888  7899999999999999999998766   5666665443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.58  E-value=9.8e-08  Score=81.37  Aligned_cols=56  Identities=23%  Similarity=0.464  Sum_probs=44.9

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+...++
T Consensus        12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~   69 (235)
T cd03261          12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSE   69 (235)
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccCh
Confidence            345788999999888  8899999999999999999998776   6666666655555543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.58  E-value=4.4e-08  Score=83.78  Aligned_cols=55  Identities=25%  Similarity=0.455  Sum_probs=44.1

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ...++.++++.+.+|  ++|+||+|||||||+++|++.+.+.   .|-|.+...++..++
T Consensus        14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~   70 (243)
T TIGR02315        14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLR   70 (243)
T ss_pred             CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCC
Confidence            455899999999999  8899999999999999999998766   566666555544444

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.58  E-value=2.6e-07  Score=79.28  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=52.9

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc-----c-----------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD-----L-----------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~-----~-----------------------------------------------   59 (236)
                      +.++|+||||||||+|++++++.+...     +                                               
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~  125 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNR  125 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHH
Confidence            459999999999999999999865311     1                                               


Q ss_pred             ---cCceEEEEee-cCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           60 ---VGEKGIVFTT-NYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        60 ---~~~~~vi~tt-N~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                         .+...+++|+ +.+..   +.|+++.+.....++.+..|+.+.+..+++..
T Consensus       126 ~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~  179 (235)
T PRK08084        126 ILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR  179 (235)
T ss_pred             HHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence               2233445544 45444   56888883333478899999998888887654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.58  E-value=1.8e-07  Score=78.45  Aligned_cols=55  Identities=24%  Similarity=0.238  Sum_probs=44.1

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+.|.+...++..+++
T Consensus        14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~   70 (214)
T cd03292          14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRG   70 (214)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCH
Confidence            35788899998888  8899999999999999999998776   6666666555555543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.58  E-value=2.8e-07  Score=79.40  Aligned_cols=50  Identities=24%  Similarity=0.383  Sum_probs=41.1

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ...++.++++.+.+|  ++|+||||||||||+++|++...+.   .|-|.+...+
T Consensus        15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~   66 (253)
T TIGR02323        15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRS   66 (253)
T ss_pred             CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccc
Confidence            345688999999888  8999999999999999999998776   5666665544

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.57  E-value=1.6e-07  Score=79.60  Aligned_cols=57  Identities=21%  Similarity=0.357  Sum_probs=44.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      .++.++++.+++|  +.|+||+|+|||||+++|++.+.+.   .|.|.+....+..+++.-+
T Consensus        17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~   75 (229)
T cd03254          17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSL   75 (229)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHHH
Confidence            4788999999998  8899999999999999999998776   5666665555544554333

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.57  E-value=2e-07  Score=78.77  Aligned_cols=55  Identities=20%  Similarity=0.316  Sum_probs=45.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ..++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .+-|.+..+.+..+++
T Consensus        15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~   71 (222)
T PRK10908         15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKN   71 (222)
T ss_pred             CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCCh
Confidence            45788999999888  8899999999999999999998776   6777776666655543

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.57  E-value=1.8e-07  Score=78.85  Aligned_cols=54  Identities=20%  Similarity=0.368  Sum_probs=43.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-+.+...++..+++
T Consensus        19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~   74 (221)
T TIGR02211        19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSS   74 (221)
T ss_pred             EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCH
Confidence            4788899998888  8899999999999999999998776   6666666555555554

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.57  E-value=2e-07  Score=85.54  Aligned_cols=54  Identities=17%  Similarity=0.222  Sum_probs=44.0

Q ss_pred             HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      +...+.....+.+++|.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+..
T Consensus        30 ~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG   85 (382)
T TIGR03415        30 ILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKD   85 (382)
T ss_pred             HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECC
Confidence            334445566788899999999  8899999999999999999998877   66666655

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.57  E-value=1.1e-07  Score=80.89  Aligned_cols=54  Identities=17%  Similarity=0.279  Sum_probs=44.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .+-+.+...++...++
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~   74 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSG   74 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCH
Confidence            5789999999888  8899999999999999999998876   6666666655555443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.56  E-value=2.7e-08  Score=84.29  Aligned_cols=67  Identities=19%  Similarity=0.271  Sum_probs=60.0

Q ss_pred             HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ++..+|...++++++++..++|  ++|+||||+||||++++|++.....   .+.|++.+.++..+||.-+-
T Consensus         8 ~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~   76 (237)
T COG0410           8 NLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERA   76 (237)
T ss_pred             eEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHH
Confidence            4566777888999999999999  8999999999999999999999988   78999999999999987664

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=1.8e-07  Score=79.65  Aligned_cols=54  Identities=19%  Similarity=0.360  Sum_probs=44.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+...++..+++
T Consensus        23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~   78 (233)
T PRK11629         23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSS   78 (233)
T ss_pred             eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCH
Confidence            4788999999988  8899999999999999999998766   6767766656655654

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.56  E-value=4.9e-07  Score=75.55  Aligned_cols=69  Identities=20%  Similarity=0.210  Sum_probs=54.0

Q ss_pred             HHHhhhChh-HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcc
Q 048723           13 LKKFSEGKE-YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMD   86 (236)
Q Consensus        13 v~~~~~~~~-~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d   86 (236)
                      +...|.++. .+++++|...+|  +-|.||||+||||+++.||..+-++   .+.+.+.+-+...-|...+|  ++.
T Consensus         7 l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr--~IG   78 (245)
T COG4555           7 LTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRR--KIG   78 (245)
T ss_pred             hhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhh--hcc
Confidence            334445554 789999999999  7799999999999999999999998   78888777666665555555  554

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.56  E-value=2.5e-07  Score=80.04  Aligned_cols=50  Identities=20%  Similarity=0.352  Sum_probs=41.7

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ...++.++++.+.+|  ++|.||||+|||||+++|++.+.+.   .|-|.+...+
T Consensus        18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~   69 (258)
T PRK11701         18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRD   69 (258)
T ss_pred             CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCcc
Confidence            345788999999888  8999999999999999999998776   5666665554

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=2.2e-07  Score=81.12  Aligned_cols=59  Identities=20%  Similarity=0.258  Sum_probs=46.5

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+...++...++.-++
T Consensus        22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~   82 (271)
T PRK13632         22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIR   82 (271)
T ss_pred             ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHh
Confidence            35789999999888  8899999999999999999998776   66666666666555543333

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.56  E-value=1.1e-07  Score=80.21  Aligned_cols=49  Identities=22%  Similarity=0.312  Sum_probs=40.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-+.+....
T Consensus        17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~   67 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP   67 (220)
T ss_pred             eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEE
Confidence            35788999999888  8899999999999999999998766   5656554433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=2.1e-07  Score=84.14  Aligned_cols=56  Identities=16%  Similarity=0.224  Sum_probs=46.6

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ..++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|.|.+...++..+++.
T Consensus        18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~   75 (343)
T PRK11153         18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEK   75 (343)
T ss_pred             eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHH
Confidence            35788999999999  8899999999999999999998877   67777776666666543

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=1e-07  Score=87.24  Aligned_cols=56  Identities=23%  Similarity=0.432  Sum_probs=46.1

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ....+.++++.+.+|  ++|+||+|||||||+++||+...++   .|-|.+....+..+++
T Consensus        31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~   88 (377)
T PRK11607         31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPP   88 (377)
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence            334677888888888  8899999999999999999999877   7777777766666665

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.55  E-value=2e-07  Score=91.62  Aligned_cols=74  Identities=28%  Similarity=0.406  Sum_probs=56.1

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------------   59 (236)
                      ..++|+|||||||||++++|++..+..+                                                    
T Consensus        53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~  132 (725)
T PRK13341         53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW  132 (725)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH
Confidence            3599999999999999999999886654                                                    


Q ss_pred             --cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 --VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 --~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                        .+.+++|++|  |....+++++++  |. ..+.|+.++.+.+..+++.++.
T Consensus       133 lE~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~  182 (725)
T PRK13341        133 VENGTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ  182 (725)
T ss_pred             hcCceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence              2244455544  444568888888  43 4588999999888888887664

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.55  E-value=1.7e-07  Score=79.07  Aligned_cols=57  Identities=21%  Similarity=0.324  Sum_probs=45.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ...++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .|-|.+....+...++.
T Consensus        12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~   70 (222)
T cd03224          12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPH   70 (222)
T ss_pred             CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHH
Confidence            345788999999888  8899999999999999999998776   56666665555555553

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.55  E-value=1.8e-07  Score=76.46  Aligned_cols=116  Identities=20%  Similarity=0.204  Sum_probs=75.0

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH---HHhcCCcccEE--ecc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA---LIRRGRMDKRI--EMS   92 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a---l~r~gR~d~~i--~~~   92 (236)
                      -.+++++++.+.+|  +.++||+|+|||||+..+|+.-.++   .+-|...+.....+|..   .+|..++..+|  +.-
T Consensus        23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L   99 (228)
T COG4181          23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL   99 (228)
T ss_pred             eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeec
Confidence            35788888888888  9999999999999999999998888   78888888889999863   34444454444  223


Q ss_pred             cCCHHHHHHHHHHh-hcc-cchhhHHHHHHHHHcCCC-----------CHHHHHHHHcc
Q 048723           93 YCCFEAFMVLAKSY-LDI-ESHAFFAEINSLLAETNM-----------ASADVAENLMP  138 (236)
Q Consensus        93 ~p~~~~~~~i~~~~-l~~-~~~~~~~~i~~ll~~~gl-----------s~a~i~~~l~~  138 (236)
                      .|+........-.. +.. .....+.....+++..|+           |+++-++..++
T Consensus       100 ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA  158 (228)
T COG4181         100 IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA  158 (228)
T ss_pred             cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence            45554443322221 111 122234445556665554           55555555444

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.55  E-value=1.1e-07  Score=79.56  Aligned_cols=54  Identities=15%  Similarity=0.343  Sum_probs=43.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL   75 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l   75 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+...
T Consensus        13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~   68 (204)
T PRK13538         13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQ   68 (204)
T ss_pred             CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccc
Confidence            345788899999988  8899999999999999999998877   56666665544443

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=2e-07  Score=82.17  Aligned_cols=52  Identities=21%  Similarity=0.290  Sum_probs=43.8

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL   75 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l   75 (236)
                      .+++++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+...++...
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~   74 (287)
T PRK13637         21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDK   74 (287)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCc
Confidence            4788999999998  8899999999999999999998877   67777766655543

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.55  E-value=5.4e-07  Score=87.11  Aligned_cols=71  Identities=13%  Similarity=0.049  Sum_probs=44.0

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHH-HHHHHHHcCCCCHHHHHHH
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFA-EINSLLAETNMASADVAEN  135 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~-~i~~ll~~~gls~a~i~~~  135 (236)
                      ...||++|++++.+.+.++.  |. ..+.|..++.+.....++..+...+..... .+..++...+-+..++.+.
T Consensus       154 ~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~l  225 (618)
T PRK14951        154 YLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSL  225 (618)
T ss_pred             CeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            57888888899999988887  44 668888888877776666654433322222 2333334444445544443

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.55  E-value=2.6e-07  Score=78.30  Aligned_cols=54  Identities=24%  Similarity=0.366  Sum_probs=44.4

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|.|.+....+..+++.
T Consensus        25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~   80 (228)
T PRK10584         25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEE   80 (228)
T ss_pred             EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHH
Confidence            788999999888  8899999999999999999998776   66666666555555543

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.54  E-value=5.2e-07  Score=87.54  Aligned_cols=75  Identities=23%  Similarity=0.302  Sum_probs=60.4

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------   59 (236)
                      ++..|||+||+|+||||+++++|+.++..                        +                          
T Consensus        37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~  116 (647)
T PRK07994         37 LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA  116 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhh
Confidence            34558999999999999999999998651                        1                          


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                    .+.+.||++|++++.|.+.++.  |. ..+.|..++.+.....+...+
T Consensus       117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il  191 (647)
T PRK07994        117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHIL  191 (647)
T ss_pred             cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHH
Confidence                                          2367888889999999999888  53 778999998888777776655

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.54  E-value=5.4e-07  Score=85.98  Aligned_cols=44  Identities=11%  Similarity=0.087  Sum_probs=32.8

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      +.+.+|++|+++..+.+.++.  |. ..+.|..++.+.....+...+
T Consensus       148 ~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il  191 (546)
T PRK14957        148 EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIIL  191 (546)
T ss_pred             CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHH
Confidence            367788888889999988887  44 668898888877766655543

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.54  E-value=9.8e-08  Score=80.27  Aligned_cols=62  Identities=21%  Similarity=0.387  Sum_probs=54.1

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +..+.++.+++++.+.|  +.++||||+|||||+++|.+++.+.   .+.+-+....+++.++.-+.
T Consensus        11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA   74 (259)
T COG4559          11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELA   74 (259)
T ss_pred             eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHH
Confidence            45677899999999999  7799999999999999999999988   78888888888888886554

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=98.54  E-value=1e-06  Score=79.13  Aligned_cols=78  Identities=27%  Similarity=0.238  Sum_probs=60.0

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------   59 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------   59 (236)
                      +...+.++|.||||||||++++++|..++.+|                                                
T Consensus        40 ~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~D  119 (329)
T COG0714          40 LLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLD  119 (329)
T ss_pred             HHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEe
Confidence            44455699999999999999999999999888                                                


Q ss_pred             ---------------------------c-----CceEEEEeec-----CccccchHHHhcCCcccEEecccC-CHHHHHH
Q 048723           60 ---------------------------V-----GEKGIVFTTN-----YVDKLDPALIRRGRMDKRIEMSYC-CFEAFMV  101 (236)
Q Consensus        60 ---------------------------~-----~~~~vi~ttN-----~~~~ld~al~r~gR~d~~i~~~~p-~~~~~~~  101 (236)
                                                 .     ...++++|+|     ....++.++++  ||-..++++|| .......
T Consensus       120 EInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~  197 (329)
T COG0714         120 EINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERI  197 (329)
T ss_pred             ccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHH
Confidence                                       1     2346677778     55678999999  89888999999 4444444


Q ss_pred             HHHHhh
Q 048723          102 LAKSYL  107 (236)
Q Consensus       102 i~~~~l  107 (236)
                      +...+.
T Consensus       198 i~~~~~  203 (329)
T COG0714         198 ILARVG  203 (329)
T ss_pred             HHHhCc
Confidence            444443

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.53  E-value=3.8e-07  Score=76.86  Aligned_cols=26  Identities=31%  Similarity=0.502  Sum_probs=22.7

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .+.++|+||||||||++++++++.+.
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~~~~   63 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACAAAE   63 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            45599999999999999999998763

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.53  E-value=2.6e-07  Score=91.30  Aligned_cols=74  Identities=28%  Similarity=0.420  Sum_probs=59.8

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhc----------CCcc-----------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFL----------NYDL-----------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l----------~~~~-----------------------------------------   59 (236)
                      +.+++|+||||||||+++++||..+          +..+                                         
T Consensus       203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE  282 (731)
T TIGR02639       203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE  282 (731)
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence            4569999999999999999999876          2222                                         


Q ss_pred             --------------------------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 --------------------------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 --------------------------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                .|...+|++||..+     ..|+++.|  ||. .|.+..|+.+++..|++.+.
T Consensus       283 ih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~  358 (731)
T TIGR02639       283 IHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLK  358 (731)
T ss_pred             HHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHH
Confidence                                      34678889988633     57999999  995 79999999999999988543

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.53  E-value=4.5e-07  Score=87.07  Aligned_cols=76  Identities=22%  Similarity=0.333  Sum_probs=58.9

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c-------------------------
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------   59 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------   59 (236)
                      ..++++||+||||+||||+|+++|+.+...                        +                         
T Consensus        36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P  115 (605)
T PRK05896         36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLP  115 (605)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhch
Confidence            345679999999999999999999997521                        0                         


Q ss_pred             -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                     .+..++|++|+.++.+++.+++  |. ..+.|..++.......+...+
T Consensus       116 ~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il  191 (605)
T PRK05896        116 TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIA  191 (605)
T ss_pred             hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHH
Confidence                                           2367888888889999999888  44 468888888877776666544

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.53  E-value=2.9e-07  Score=80.06  Aligned_cols=55  Identities=20%  Similarity=0.270  Sum_probs=44.8

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+..++.
T Consensus        24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~   80 (265)
T TIGR02769        24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDR   80 (265)
T ss_pred             eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCH
Confidence            35789999999999  8899999999999999999998776   6666666655555544

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.53  E-value=3.6e-07  Score=79.45  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=67.5

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccE------Eecc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKR------IEMS   92 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~------i~~~   92 (236)
                      ....+++|.++.|  +.|+||||+||||++|.|.+.+-+.   .|.|-..+-.|..=+.+.+|  ++..+      ....
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~--~~~~v~gqk~ql~Wd  112 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLR--SIGLVMGQKLQLWWD  112 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHH--HHHHHhhhhheeeee
Confidence            4678899999999  8899999999999999999999888   88888888888776666666  43222      2445


Q ss_pred             cCCHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 048723           93 YCCFEAFMVLAKSYLDIESHAFFAEINSLLA  123 (236)
Q Consensus        93 ~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~  123 (236)
                      .|..+... +.+....+....+..+...+.+
T Consensus       113 lp~~ds~~-v~~~Iy~Ipd~~F~~r~~~l~e  142 (325)
T COG4586         113 LPALDSLE-VLKLIYEIPDDEFAERLDFLTE  142 (325)
T ss_pred             chhhhhHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence            56555554 3444444444444444444433

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=2.6e-07  Score=81.11  Aligned_cols=65  Identities=18%  Similarity=0.271  Sum_probs=49.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                      ..+.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+....+...++..++. ++.+.+
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~-~i~~v~   87 (279)
T PRK13650         21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRH-KIGMVF   87 (279)
T ss_pred             eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHh-hceEEE
Confidence            3788999999888  8999999999999999999998877   677777776665555443332 444433

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.53  E-value=4.7e-07  Score=81.62  Aligned_cols=71  Identities=27%  Similarity=0.410  Sum_probs=53.8

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc---c-------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD---L-------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~---~-------------------------------------------------   59 (236)
                      ++++|+||||||||||++.|+.-....   |                                                 
T Consensus       163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~f  242 (554)
T KOG2028|consen  163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTF  242 (554)
T ss_pred             CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcc
Confidence            349999999999999999999987655   3                                                 


Q ss_pred             -----cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723           60 -----VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS  105 (236)
Q Consensus        60 -----~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~  105 (236)
                           .|.+.+|++|  |..-.|..+|+.++|+   |-+.....+....|+++
T Consensus       243 LP~VE~G~I~lIGATTENPSFqln~aLlSRC~V---fvLekL~~n~v~~iL~r  292 (554)
T KOG2028|consen  243 LPHVENGDITLIGATTENPSFQLNAALLSRCRV---FVLEKLPVNAVVTILMR  292 (554)
T ss_pred             cceeccCceEEEecccCCCccchhHHHHhccce---eEeccCCHHHHHHHHHH
Confidence                 4577888766  6667789999997665   55555556666666665

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.53  E-value=1.9e-07  Score=81.02  Aligned_cols=59  Identities=24%  Similarity=0.417  Sum_probs=45.5

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPAL   79 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al   79 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+.......+++..
T Consensus        13 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~   73 (258)
T PRK13548         13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE   73 (258)
T ss_pred             CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHH
Confidence            3445789999999888  8899999999999999999998766   565666555454455443

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.52  E-value=6e-08  Score=81.02  Aligned_cols=50  Identities=20%  Similarity=0.330  Sum_probs=41.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|.|.+....+
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~   64 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI   64 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEh
Confidence            45788999999888  8899999999999999999998776   66666655433

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.52  E-value=3.2e-08  Score=84.52  Aligned_cols=67  Identities=24%  Similarity=0.369  Sum_probs=59.5

Q ss_pred             HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+...|..-..++++++...+|  +.|+||||+||||+...|.+.+.++   .+.|++.+.++..++|..+.
T Consensus         9 ~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~ia   77 (250)
T COG0411           9 GLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIA   77 (250)
T ss_pred             cceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHH
Confidence            3455566777889999999999  8899999999999999999999999   89999999999999997765

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.52  E-value=1.3e-06  Score=82.91  Aligned_cols=43  Identities=14%  Similarity=0.204  Sum_probs=33.3

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ..++|+++|.+..+++.+..  |. ..+.|..++.+.....++..+
T Consensus       146 ~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~  188 (504)
T PRK14963        146 HVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLL  188 (504)
T ss_pred             CEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHH
Confidence            56788888999999998887  44 568898888887776666554

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=2.9e-07  Score=80.58  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=46.8

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      ..+++++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+...++...+...+
T Consensus        18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~   77 (274)
T PRK13647         18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWV   77 (274)
T ss_pred             CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHH
Confidence            34789999999998  8899999999999999999998877   6777777666655554433

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.52  E-value=3.3e-07  Score=79.95  Aligned_cols=55  Identities=20%  Similarity=0.324  Sum_probs=44.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ..++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .|-|.+....+..+++
T Consensus        25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~   81 (268)
T PRK10419         25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNR   81 (268)
T ss_pred             eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccCh
Confidence            45789999999888  8899999999999999999988766   5666666655655554

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.52  E-value=7.3e-07  Score=84.22  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=34.2

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                      ..++|++|+.++.+++++++  |. ..+.|..++.++....+..++..
T Consensus       149 ~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~  193 (486)
T PRK14953        149 RTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNE  193 (486)
T ss_pred             CeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHH
Confidence            56777778888899988887  44 46888888888887777765543

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.52  E-value=1e-06  Score=87.87  Aligned_cols=45  Identities=13%  Similarity=0.061  Sum_probs=33.8

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ..++||++|+.++.|.+.++.  |- .++.|..++.+....++...+.
T Consensus       149 ~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~  193 (824)
T PRK07764        149 EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICA  193 (824)
T ss_pred             CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHH
Confidence            367888888888998888887  43 5688888887777766666543

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=3.5e-07  Score=80.12  Aligned_cols=51  Identities=14%  Similarity=0.238  Sum_probs=42.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+...++..
T Consensus        21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~   73 (280)
T PRK13649         21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITS   73 (280)
T ss_pred             ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccc
Confidence            3788999999888  7899999999999999999998776   6666666655443

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=3.7e-07  Score=81.33  Aligned_cols=45  Identities=22%  Similarity=0.371  Sum_probs=38.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT   68 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t   68 (236)
                      ..++++++.+.+|  +.|+||||+|||||+++|++.+.+.   .+-|.+.
T Consensus        21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~   67 (305)
T PRK13651         21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWI   67 (305)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEe
Confidence            4789999999998  8999999999999999999998776   4555554

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.51  E-value=3.8e-07  Score=77.12  Aligned_cols=53  Identities=28%  Similarity=0.394  Sum_probs=44.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+..++
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~   73 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLS   73 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccc
Confidence            5789999999999  8899999999999999999998766   566666665555555

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.9e-07  Score=79.85  Aligned_cols=57  Identities=21%  Similarity=0.364  Sum_probs=44.9

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ....++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .|-+.+....+..+++
T Consensus        14 ~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~   72 (241)
T PRK10895         14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPL   72 (241)
T ss_pred             CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence            3445788999999888  8899999999999999999998766   5656665555555554

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.51  E-value=4e-07  Score=77.81  Aligned_cols=58  Identities=28%  Similarity=0.415  Sum_probs=44.2

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPAL   79 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al   79 (236)
                      ...++.++++.+.+|  ++|+||+|+|||||+++|++.+  .+.   .|-|.+...++..+++..
T Consensus        12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR01978        12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDE   73 (243)
T ss_pred             CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHH
Confidence            445788999999998  8899999999999999999985  334   455666555555555543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.51  E-value=7.2e-07  Score=80.32  Aligned_cols=60  Identities=17%  Similarity=0.173  Sum_probs=46.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      ..+++++|.+.+|  +.|+||||||||||+++|++.+.+.....|-|.+...++..++...+
T Consensus        30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~   91 (330)
T PRK09473         30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL   91 (330)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            4788999999999  88999999999999999999987531114666666666767766544

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.51  E-value=1.7e-07  Score=80.10  Aligned_cols=56  Identities=21%  Similarity=0.314  Sum_probs=43.7

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ....++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+....+...+
T Consensus        13 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~   70 (239)
T cd03296          13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVP   70 (239)
T ss_pred             CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCC
Confidence            3445788999998888  8899999999999999999998766   566666554444333

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09087 hypothetical protein; Validated

Probab=98.51  E-value=6.3e-07  Score=76.55  Aligned_cols=77  Identities=16%  Similarity=0.112  Sum_probs=53.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------cCceEEEEee
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------VGEKGIVFTT   69 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------~~~~~vi~tt   69 (236)
                      .++|+||+|||||+|+++++...+..+                                           .+..+++.++
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~  125 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR  125 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence            389999999999999999985543322                                           2333444444


Q ss_pred             cCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           70 NYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        70 N~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                      ..+..   ..++++.+..-...+.+..|+.+.+..+++.++..
T Consensus       126 ~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~  168 (226)
T PRK09087        126 LWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD  168 (226)
T ss_pred             CChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence            33332   35677763333588899999999999999887643

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.8e-07  Score=81.08  Aligned_cols=49  Identities=29%  Similarity=0.582  Sum_probs=40.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+...
T Consensus        13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~   63 (255)
T PRK11248         13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGK   63 (255)
T ss_pred             CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCE
Confidence            345788999999888  8899999999999999999998766   555555443

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.50  E-value=3.7e-07  Score=76.49  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=41.4

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|.+.+..+..
T Consensus        12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~   64 (213)
T cd03262          12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKL   64 (213)
T ss_pred             CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEC
Confidence            345788889988888  8899999999999999999998776   56666655444

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.50  E-value=7.9e-07  Score=75.40  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=23.1

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..+.++|+||||||||+|++++++..
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34569999999999999999999875

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.50  E-value=9.5e-08  Score=81.74  Aligned_cols=58  Identities=22%  Similarity=0.363  Sum_probs=45.9

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ....++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-+.+....+..+++.
T Consensus        13 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~   72 (242)
T TIGR03411        13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH   72 (242)
T ss_pred             CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHH
Confidence            3345788999999888  7899999999999999999998766   56666666555555554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=2.9e-07  Score=80.88  Aligned_cols=57  Identities=16%  Similarity=0.123  Sum_probs=46.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+.+.++...+...+
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~   79 (279)
T PRK13635         21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDV   79 (279)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHH
Confidence            4889999999998  8899999999999999999999877   6777777766665554333

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.50  E-value=4.8e-07  Score=86.24  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=58.1

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------   59 (236)
                      ++..+||+||||+||||+++++|+.++..                        +                          
T Consensus        37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~  116 (527)
T PRK14969         37 LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT  116 (527)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc
Confidence            44568999999999999999999998541                        0                          


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                    .+.+.+|++|++++.+++.++.  |. ..+.|..++.+.....+...+
T Consensus       117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il  191 (527)
T PRK14969        117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHIL  191 (527)
T ss_pred             cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHH
Confidence                                          2367788888889999888777  43 668888888877776665554

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.49  E-value=1.5e-07  Score=86.78  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=50.4

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      |.+..++++++|.+.+|  +.|+||||+|||||+++|++.+.+.   .|.|.+....+..+++..++
T Consensus        13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~   76 (402)
T PRK09536         13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAAS   76 (402)
T ss_pred             ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHh
Confidence            34456789999999999  8899999999999999999999877   67777777677777654444

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.49  E-value=2e-06  Score=85.05  Aligned_cols=74  Identities=22%  Similarity=0.381  Sum_probs=60.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~-----------------------------------------------------   59 (236)
                      .++|+||||||||+++++||..++.++                                                     
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka  569 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA  569 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence            389999999999999999999986554                                                     


Q ss_pred             --------------------------cCceEEEEeecCc-------------------------cccchHHHhcCCcccE
Q 048723           60 --------------------------VGEKGIVFTTNYV-------------------------DKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 --------------------------~~~~~vi~ttN~~-------------------------~~ld~al~r~gR~d~~   88 (236)
                                                ..+.+||+|||.-                         ..+.|.++.  |+|.+
T Consensus       570 ~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~i  647 (758)
T PRK11034        570 HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNI  647 (758)
T ss_pred             hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEE
Confidence                                      1266799999822                         236678877  99999


Q ss_pred             EecccCCHHHHHHHHHHhhc
Q 048723           89 IEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~  108 (236)
                      |.|...+.+....|+..++.
T Consensus       648 i~f~~L~~~~l~~I~~~~l~  667 (758)
T PRK11034        648 IWFDHLSTDVIHQVVDKFIV  667 (758)
T ss_pred             EEcCCCCHHHHHHHHHHHHH
Confidence            99999999999989887763

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.49  E-value=7.6e-07  Score=87.11  Aligned_cols=75  Identities=24%  Similarity=0.379  Sum_probs=58.7

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc---------------------c-----------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD---------------------L-----------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~---------------------~-----------------------------   59 (236)
                      +++.|||+||+|+|||++|+++|..+.+.                     +                             
T Consensus        39 l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~  118 (725)
T PRK07133         39 ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSK  118 (725)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCC
Confidence            45669999999999999999999887431                     0                             


Q ss_pred             ---------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 ---------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 ---------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                 .+.+++|++|+.++.|++.+++  |. ..+.|..++.+.....+...+
T Consensus       119 ~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il  190 (725)
T PRK07133        119 YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFIL  190 (725)
T ss_pred             CEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHH
Confidence                                       2367888888899999999888  54 578898888887776666543

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.49  E-value=1.7e-07  Score=77.05  Aligned_cols=53  Identities=15%  Similarity=0.202  Sum_probs=43.6

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .+-+.+...++...++
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~   69 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSP   69 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCH
Confidence            678888888888  8899999999999999999999877   6666666655555554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK08118 topology modulation protein; Reviewed

Probab=98.49  E-value=4e-07  Score=74.16  Aligned_cols=72  Identities=25%  Similarity=0.279  Sum_probs=53.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc---------------------------cCceEEEEeecCccccchHHHhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------VGEKGIVFTTNYVDKLDPALIRRGRM   85 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~---------------------------~~~~~vi~ttN~~~~ld~al~r~gR~   85 (236)
                      .++++|||||||||+++.|+..++.++                           ...--.|+.+|+...++..+ .  +.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~wVidG~~~~~~~~~l-~--~~   79 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEWIIDGNYGGTMDIRL-N--AA   79 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCCEEEeCCcchHHHHHH-H--hC
Confidence            489999999999999999999998774                           11223566777776665433 2  58


Q ss_pred             ccEEecccCCHHHHHHHHHHhh
Q 048723           86 DKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        86 d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      |.+|++..|...-...++++++
T Consensus        80 d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         80 DTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHH
Confidence            8889998888776666666654

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.49  E-value=5e-06  Score=83.55  Aligned_cols=74  Identities=24%  Similarity=0.362  Sum_probs=59.8

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhc----------CCcc-----------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFL----------NYDL-----------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l----------~~~~-----------------------------------------   59 (236)
                      ..+++|+||||||||++++.||..+          ++.+                                         
T Consensus       199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfID  278 (857)
T PRK10865        199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID  278 (857)
T ss_pred             cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEe
Confidence            3458999999999999999999987          2332                                         


Q ss_pred             --------------------------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 --------------------------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 --------------------------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                .|...+|++|+..+     .+|+++.|  ||+ .|.++.|+.+.+..+++.+.
T Consensus       279 Eih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~  354 (857)
T PRK10865        279 ELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLK  354 (857)
T ss_pred             cHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHh
Confidence                                      34577888888776     48999999  996 68899999999888887654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.49  E-value=4.4e-07  Score=76.91  Aligned_cols=55  Identities=27%  Similarity=0.403  Sum_probs=43.7

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc-----CCcccCceEEEEeecCccccc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL-----NYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l-----~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+     .+.   .|-|.+...++..++
T Consensus        12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~   73 (227)
T cd03260          12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLD   73 (227)
T ss_pred             CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcc
Confidence            345788999999888  8899999999999999999998     555   566666665554444

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.48  E-value=3.1e-07  Score=77.98  Aligned_cols=58  Identities=21%  Similarity=0.094  Sum_probs=47.0

Q ss_pred             HHHHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723            8 EIKKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT   68 (236)
Q Consensus         8 ~i~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t   68 (236)
                      -.++.+...|....++.++++.+.+|  +.|+||+|+|||||+++|++...+.   .+-+.+.
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~   82 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVR   82 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEC
Confidence            34566666677777999999999998  8899999999999999999988766   4555443

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.48  E-value=1.9e-07  Score=80.43  Aligned_cols=60  Identities=20%  Similarity=0.313  Sum_probs=47.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++...+.   .|.+.+....+...++..++
T Consensus        17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~   78 (255)
T PRK11300         17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIA   78 (255)
T ss_pred             CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHH
Confidence            345788999999888  8899999999999999999998776   66666666555555554433

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.48  E-value=3.1e-07  Score=79.69  Aligned_cols=53  Identities=25%  Similarity=0.296  Sum_probs=46.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ..+.+++|.+.+|  +.|+|.+||||||++++|.+...+.   .|-|++...++..++
T Consensus        27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~   81 (268)
T COG4608          27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLS   81 (268)
T ss_pred             EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcc
Confidence            4577899999999  8899999999999999999999988   888999887765554

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.48  E-value=1.3e-06  Score=86.34  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=27.4

Q ss_pred             cchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           75 LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        75 ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ++|.++.  |+|.+|.|...+.+....|+...+.
T Consensus       632 f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~  663 (731)
T TIGR02639       632 FSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD  663 (731)
T ss_pred             cChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence            5677776  9999999999999999999988764

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.48  E-value=1.6e-07  Score=76.39  Aligned_cols=56  Identities=21%  Similarity=0.329  Sum_probs=44.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPAL   79 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al   79 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-+.+....+..+++..
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~   73 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES   73 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHH
Confidence            4788889988888  8899999999999999999998776   565666554444455433

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=5.4e-07  Score=78.55  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .++.++++.+.+|  ++|+||||+|||||+++|++.+.+.   .|-|.+....+...+..-++
T Consensus        23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~   82 (269)
T PRK13648         23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLR   82 (269)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHH
Confidence            3788999999888  8899999999999999999998776   66666666555445443333

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.47  E-value=4.3e-07  Score=78.25  Aligned_cols=52  Identities=23%  Similarity=0.267  Sum_probs=42.4

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      ...++.++++.+.+|  ++|+||||+|||||+++|++.+.+.   .|-+.+....+.
T Consensus        12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~   65 (252)
T TIGR03005        12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLY   65 (252)
T ss_pred             CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcc
Confidence            345788999999988  8899999999999999999998776   566666555443

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.47  E-value=7.6e-08  Score=78.82  Aligned_cols=54  Identities=26%  Similarity=0.439  Sum_probs=43.8

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-|.+..+.+..++
T Consensus        13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~   68 (178)
T cd03229          13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLE   68 (178)
T ss_pred             eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccc
Confidence            45788889999888  8899999999999999999998766   666666665555554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=3.6e-07  Score=80.03  Aligned_cols=54  Identities=19%  Similarity=0.270  Sum_probs=44.4

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ..+++++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+....+..++
T Consensus        15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~   70 (274)
T PRK13644         15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFS   70 (274)
T ss_pred             CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccc
Confidence            34789999999999  8899999999999999999998776   666666665555544

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.46  E-value=7.1e-07  Score=85.97  Aligned_cols=76  Identities=17%  Similarity=0.286  Sum_probs=57.9

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c-------------------------
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L-------------------------   59 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~-------------------------   59 (236)
                      .++..|||+||+|+||||+++++++.++..                        +                         
T Consensus        36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p  115 (576)
T PRK14965         36 RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLP  115 (576)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcc
Confidence            345669999999999999999999998531                        1                         


Q ss_pred             -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                     .+.++||++|+.++.|++.++.  |. ..+.|..++.......+...+
T Consensus       116 ~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~  191 (576)
T PRK14965        116 SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIA  191 (576)
T ss_pred             ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHH
Confidence                                           2367888889999999999887  43 567888777766665555433

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.46  E-value=1.8e-07  Score=84.96  Aligned_cols=56  Identities=25%  Similarity=0.389  Sum_probs=45.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ...++.++++.+.+|  +.|+||+|||||||+++|++.+.++   .|-|.+.+.++..+++
T Consensus        14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~   71 (353)
T PRK10851         14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHA   71 (353)
T ss_pred             CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence            345788899999888  8899999999999999999998877   6777776666655554

>PRK08727 hypothetical protein; Validated

Probab=98.46  E-value=6.6e-07  Score=76.65  Aligned_cols=74  Identities=23%  Similarity=0.239  Sum_probs=54.1

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC---Ccc-------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN---YDL-------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~---~~~-------------------------------------------------   59 (236)
                      ..++|+||+|||||+|+.++++.+.   ..+                                                 
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~  121 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR  121 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH
Confidence            3499999999999999999977753   221                                                 


Q ss_pred             --cCceEEEEeec-Ccccc---chHHHhcCCc--ccEEecccCCHHHHHHHHHHhh
Q 048723           60 --VGEKGIVFTTN-YVDKL---DPALIRRGRM--DKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 --~~~~~vi~ttN-~~~~l---d~al~r~gR~--d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                        ...+.+|+|+| .+..+   ++++.+  |+  ...+.++.|+.+.+..+++.+.
T Consensus       122 ~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a  175 (233)
T PRK08727        122 ARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERA  175 (233)
T ss_pred             HHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHH
Confidence              11334555554 55555   678887  64  5778999999999999988754

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.46  E-value=1.1e-06  Score=84.59  Aligned_cols=86  Identities=17%  Similarity=0.232  Sum_probs=61.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC-----Ccc------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN-----YDL------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~-----~~~------------------------------------------------   59 (236)
                      .++|||++|||||.|+++|++.+.     ..+                                                
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~t  395 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKEST  395 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHH
Confidence            489999999999999999999863     222                                                


Q ss_pred             ------------cCceEEEEeecCc----cccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHH
Q 048723           60 ------------VGEKGIVFTTNYV----DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEI  118 (236)
Q Consensus        60 ------------~~~~~vi~ttN~~----~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i  118 (236)
                                  ..+..+|+++|..    ..+++.|+.+......+.+..|+.+.|..|++.........+..++
T Consensus       396 qeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV  470 (617)
T PRK14086        396 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV  470 (617)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence                        1134455666643    3577888883334677799999999999999987654444433333

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.46  E-value=2e-07  Score=79.51  Aligned_cols=54  Identities=22%  Similarity=0.435  Sum_probs=43.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ..++.++++.+.+|  +.|+||+|||||||+++|++.+.+.   .|-|.+.+.++...+
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~   69 (241)
T cd03256          14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLK   69 (241)
T ss_pred             cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccC
Confidence            45788999999988  8899999999999999999998766   566666555555554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=5.5e-07  Score=78.57  Aligned_cols=52  Identities=15%  Similarity=0.277  Sum_probs=42.7

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .+..+++++++.+.+|  ++|+||||+|||||+++|++.+.+.   .|-|.+....+
T Consensus        12 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i   65 (271)
T PRK13638         12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPL   65 (271)
T ss_pred             CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEc
Confidence            3445889999999988  8899999999999999999998777   66666655544

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.46  E-value=4.5e-07  Score=77.27  Aligned_cols=56  Identities=27%  Similarity=0.457  Sum_probs=44.5

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ...+++++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|.|.+.+.....++.
T Consensus        12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~   69 (232)
T cd03300          12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPP   69 (232)
T ss_pred             CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCh
Confidence            345788999998888  8899999999999999999999876   6666665555544443

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=2.3e-07  Score=79.24  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=45.7

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-+.+...+...+++.
T Consensus        17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~   75 (237)
T PRK11614         17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTA   75 (237)
T ss_pred             CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHH
Confidence            345788999999888  8899999999999999999998776   56666666555566554

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.46  E-value=1.7e-07  Score=76.40  Aligned_cols=55  Identities=20%  Similarity=0.366  Sum_probs=44.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ..+.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-+.+.......+++.
T Consensus        16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~   72 (173)
T cd03246          16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPN   72 (173)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHH
Confidence            4788889998888  8899999999999999999998776   56666655555555543

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.46  E-value=8.1e-07  Score=83.07  Aligned_cols=78  Identities=22%  Similarity=0.313  Sum_probs=57.6

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC---Ccc-------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN---YDL-------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~---~~~-------------------------------------------------   59 (236)
                      .+++|+||||+|||+|+++|++.+.   ..+                                                 
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~q  221 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQ  221 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhH
Confidence            4599999999999999999998753   221                                                 


Q ss_pred             -----------cCceEEEEeecC-c---cccchHHHhcCCc--ccEEecccCCHHHHHHHHHHhhcccc
Q 048723           60 -----------VGEKGIVFTTNY-V---DKLDPALIRRGRM--DKRIEMSYCCFEAFMVLAKSYLDIES  111 (236)
Q Consensus        60 -----------~~~~~vi~ttN~-~---~~ld~al~r~gR~--d~~i~~~~p~~~~~~~i~~~~l~~~~  111 (236)
                                 .....+|+|+|. +   ..+++++++  ||  ...+.+..|+.+.+..+++.......
T Consensus       222 eelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~  288 (445)
T PRK12422        222 EEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS  288 (445)
T ss_pred             HHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence                       123456666654 3   346788887  66  47888999999999999887765433

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.46  E-value=6.4e-07  Score=74.89  Aligned_cols=52  Identities=27%  Similarity=0.435  Sum_probs=42.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      +..++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .+-|.+....+.
T Consensus        12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~   65 (208)
T cd03268          12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQ   65 (208)
T ss_pred             CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCccc
Confidence            345788899998888  8899999999999999999998766   666666655443

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.45  E-value=2.7e-07  Score=88.60  Aligned_cols=59  Identities=25%  Similarity=0.336  Sum_probs=51.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +.++.++++.+++|  ++++||+|||||||++.|++.+.+.   .|.|.+.+.+...++.+-+|
T Consensus       356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~  416 (582)
T PRK11176        356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLR  416 (582)
T ss_pred             CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHH
Confidence            34788889888888  9999999999999999999999888   78888888888888876665

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=3.9e-07  Score=75.22  Aligned_cols=62  Identities=18%  Similarity=0.341  Sum_probs=51.9

Q ss_pred             HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      +........+|.+++|.+..|  +.+.||||+|||||++.||+.+.+.   .+-|.+.+..++..+.
T Consensus         8 L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~   71 (209)
T COG4133           8 LSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRE   71 (209)
T ss_pred             hhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchh
Confidence            333345567899999999999  7789999999999999999999998   8889998877776654

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.45  E-value=1e-06  Score=85.02  Aligned_cols=75  Identities=20%  Similarity=0.286  Sum_probs=58.7

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------   59 (236)
                      +...|||+||||+||||++++||+.+...                        +                          
T Consensus        37 i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~  116 (624)
T PRK14959         37 VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPM  116 (624)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhh
Confidence            34569999999999999999999998752                        0                          


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                    .+..++|++||.+..+.+.+++  |. ..|.|..++.++...++...+
T Consensus       117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il  191 (624)
T PRK14959        117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVL  191 (624)
T ss_pred             cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHH
Confidence                                          2367888889988999888877  54 467888888877776666543

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=5e-07  Score=79.31  Aligned_cols=51  Identities=22%  Similarity=0.259  Sum_probs=42.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+..
T Consensus        24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~   76 (280)
T PRK13633         24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSD   76 (280)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccc
Confidence            4899999999998  8899999999999999999998876   6666666555543

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.45  E-value=2.1e-07  Score=72.45  Aligned_cols=26  Identities=42%  Similarity=0.649  Sum_probs=20.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +||.|+||+|||+++++||..++..|
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f   27 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSF   27 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--E
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCce
Confidence            78999999999999999999999888

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK07261 topology modulation protein; Provisional

Probab=98.44  E-value=5.5e-07  Score=73.57  Aligned_cols=71  Identities=23%  Similarity=0.350  Sum_probs=52.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc----------------------------cCceEEEEeecCccccchHHHhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL----------------------------VGEKGIVFTTNYVDKLDPALIRRGRM   85 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~----------------------------~~~~~vi~ttN~~~~ld~al~r~gR~   85 (236)
                      ++++|||||||||+++.|+..++.++                            .++. .|+.+|+...+-+..+.  +.
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l~--~a   79 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLYEERMQ--EA   79 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHHH--HC
Confidence            78999999999999999999887665                            1122 56666665534233444  68


Q ss_pred             ccEEecccCCHHHHHHHHHHhh
Q 048723           86 DKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        86 d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      |.+|.+..|.......++++++
T Consensus        80 d~vI~Ld~p~~~~~~R~lkR~~  101 (171)
T PRK07261         80 DQIIFLNFSRFNCLYRAFKRYL  101 (171)
T ss_pred             CEEEEEcCCHHHHHHHHHHHHH
Confidence            8888988888777777766654

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.44  E-value=5.5e-07  Score=84.10  Aligned_cols=105  Identities=19%  Similarity=0.265  Sum_probs=64.2

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC-----Ccc-----------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN-----YDL-----------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~-----~~~-----------------------------------------------   59 (236)
                      .+++||||||+|||+|+++|++.+.     ..+                                               
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~  210 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT  210 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence            3599999999999999999999752     111                                               


Q ss_pred             --------------cCceEEEEee-cCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHH-HH
Q 048723           60 --------------VGEKGIVFTT-NYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEI-NS  120 (236)
Q Consensus        60 --------------~~~~~vi~tt-N~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i-~~  120 (236)
                                    .....+++++ +++..   +++.++.+......+.+..|+.+.+..|++.........+..++ ..
T Consensus       211 ~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~  290 (440)
T PRK14088        211 GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNF  290 (440)
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence                          1123455554 45544   45566663333567889999999999999887653333333333 33


Q ss_pred             HHHcCCCCHHHHHHHH
Q 048723          121 LLAETNMASADVAENL  136 (236)
Q Consensus       121 ll~~~gls~a~i~~~l  136 (236)
                      ++....=+..++...+
T Consensus       291 Ia~~~~~~~R~L~g~l  306 (440)
T PRK14088        291 VAENVDDNLRRLRGAI  306 (440)
T ss_pred             HHhccccCHHHHHHHH
Confidence            3333333444444333

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.44  E-value=1.2e-06  Score=66.99  Aligned_cols=25  Identities=60%  Similarity=1.007  Sum_probs=22.9

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .+.++++||||||||++++.+++.+
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=5.9e-07  Score=79.23  Aligned_cols=49  Identities=27%  Similarity=0.337  Sum_probs=41.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ..++++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-+.+.+.++
T Consensus        20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i   70 (288)
T PRK13643         20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVV   70 (288)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEC
Confidence            3788999999999  8999999999999999999998877   66666655544

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.44  E-value=4.3e-07  Score=78.01  Aligned_cols=68  Identities=18%  Similarity=0.288  Sum_probs=48.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc-cchHHHhcCCcccEEecc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK-LDPALIRRGRMDKRIEMS   92 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~-ld~al~r~gR~d~~i~~~   92 (236)
                      ..+.++++.+..|  ++|+||||||||||++.+++.+.+.   .+.|.+...+... .+...+|. ++..++..+
T Consensus        18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~-~vG~VfQnp   88 (235)
T COG1122          18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQ-KVGLVFQNP   88 (235)
T ss_pred             eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhc-ceEEEEECc
Confidence            5677888888888  8899999999999999999999888   6666665544432 23333332 565555443

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.44  E-value=5.6e-07  Score=76.69  Aligned_cols=48  Identities=19%  Similarity=0.403  Sum_probs=37.3

Q ss_pred             hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      .++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+..
T Consensus         2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~   51 (230)
T TIGR01184         2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITE   51 (230)
T ss_pred             CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCC
Confidence            4567777777  8899999999999999999998766   5656655544433

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=98.43  E-value=4e-06  Score=75.60  Aligned_cols=44  Identities=18%  Similarity=0.111  Sum_probs=34.4

Q ss_pred             ceEEEEeecCcc-ccchHHHhcCCcccEEecccCCH-HHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVD-KLDPALIRRGRMDKRIEMSYCCF-EAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~-~ld~al~r~gR~d~~i~~~~p~~-~~~~~i~~~~l  107 (236)
                      ..++++++|..+ .++++++.  ||...+.+++|.. +++..+++...
T Consensus       171 rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~  216 (334)
T PRK13407        171 RFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD  216 (334)
T ss_pred             CEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence            356777778655 58999999  9999999999876 77777877653

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.43  E-value=7e-07  Score=76.28  Aligned_cols=53  Identities=26%  Similarity=0.591  Sum_probs=43.4

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .+.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .|-+.+.+.++...++
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~   68 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPP   68 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCCh
Confidence            688888988888  8899999999999999999998777   6666666655555544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.43  E-value=6.4e-07  Score=87.06  Aligned_cols=54  Identities=28%  Similarity=0.401  Sum_probs=44.5

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .++.+++|.+.+|  +.|+||||||||||+++|++.+.+.   .|-|.+....+..+++
T Consensus       338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~  393 (623)
T PRK10261        338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSP  393 (623)
T ss_pred             EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCH
Confidence            4688899999999  8899999999999999999998776   6777776665555544

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.43  E-value=2e-07  Score=78.21  Aligned_cols=51  Identities=25%  Similarity=0.367  Sum_probs=41.4

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      +....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+...
T Consensus         9 ~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~   61 (213)
T cd03235           9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGK   61 (213)
T ss_pred             ECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCc
Confidence            33445789999999888  8899999999999999999998776   566665543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=8e-07  Score=78.31  Aligned_cols=50  Identities=22%  Similarity=0.302  Sum_probs=42.4

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      .+++++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|.|.+...++.
T Consensus        21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~   72 (287)
T PRK13641         21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHIT   72 (287)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECc
Confidence            4789999999998  8899999999999999999998877   676776665543

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=6e-07  Score=80.49  Aligned_cols=48  Identities=21%  Similarity=0.414  Sum_probs=40.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ..++++++.+.+|  +.|+||+|||||||+++|++.+.+.   .|-|.+.+.+
T Consensus        40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~   89 (320)
T PRK13631         40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIY   89 (320)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEE
Confidence            4799999999999  8899999999999999999998877   5666665433

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.43  E-value=2.4e-06  Score=77.72  Aligned_cols=76  Identities=17%  Similarity=0.269  Sum_probs=57.1

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcCC----------cc---------------------------------------
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLNY----------DL---------------------------------------   59 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~----------~~---------------------------------------   59 (236)
                      .+++.++|+||||+|||++++++++.+..          ++                                       
T Consensus        37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE  116 (367)
T PRK14970         37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE  116 (367)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeC
Confidence            34567999999999999999999998743          11                                       


Q ss_pred             -------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 -------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 -------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                         ....++|++++....+.+++.+  |. ..+.+..|+.++...++....
T Consensus       117 ~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~  180 (367)
T PRK14970        117 VHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIA  180 (367)
T ss_pred             hhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHH
Confidence                               1245777788888899998887  44 458888888777666655543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.43  E-value=1e-06  Score=80.34  Aligned_cols=126  Identities=18%  Similarity=0.190  Sum_probs=81.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE--ecccCCH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI--EMSYCCF   96 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i--~~~~p~~   96 (236)
                      ...+++++..++|  +-|+|.+||||||+..+|.+.+...    +-|.|.+.+++.++...+||-|-++.+  .-+|-+.
T Consensus       301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL  376 (534)
T COG4172         301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL  376 (534)
T ss_pred             EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence            3456788888888  8899999999999999999988755    788889999999988777665544444  4444343


Q ss_pred             HHHHHHHHH-------hh-cccchhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHH
Q 048723           97 EAFMVLAKS-------YL-DIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLK  150 (236)
Q Consensus        97 ~~~~~i~~~-------~l-~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~  150 (236)
                      .-|..+...       |- .....+....+...+.+.|+.|+....+=-..|+....++.+.
T Consensus       377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIA  438 (534)
T COG4172         377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIA  438 (534)
T ss_pred             CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHH
Confidence            333322221       21 1223334556667777888877754433333555555544433

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.43  E-value=5.1e-07  Score=79.69  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=55.1

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcC--CcccEE
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRG--RMDKRI   89 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~g--R~d~~i   89 (236)
                      ...++++++.+++|  +.++|.+|+|||||+++|...-.++   .|-|+..+.++..++..-+|.-  ++.+++
T Consensus        19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIF   89 (339)
T COG1135          19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIF   89 (339)
T ss_pred             eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEe
Confidence            45788899999999  7899999999999999999888888   8888888888888887655532  455554

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.42  E-value=1.4e-06  Score=83.70  Aligned_cols=75  Identities=24%  Similarity=0.345  Sum_probs=58.5

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc------------------------c--------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD------------------------L--------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~------------------------~--------------------------   59 (236)
                      ++..|||+||||+||||+++++|+.+...                        +                          
T Consensus        37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~  116 (563)
T PRK06647         37 IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPA  116 (563)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchh
Confidence            45569999999999999999999998642                        1                          


Q ss_pred             ------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 ------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 ------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                    ....++|++|+.+..+.++++.  |. ..+.|..++.+.....++...
T Consensus       117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~  191 (563)
T PRK06647        117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVC  191 (563)
T ss_pred             cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHH
Confidence                                          2357888888888999999888  54 457888888877776666554

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=98.42  E-value=8.8e-07  Score=83.65  Aligned_cols=77  Identities=23%  Similarity=0.370  Sum_probs=61.5

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------------
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------------   59 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------------   59 (236)
                      .+..+|+|.||.|+||||++|.+|+.+++.-                                                 
T Consensus        36 ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P  115 (515)
T COG2812          36 RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP  115 (515)
T ss_pred             cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC
Confidence            3456699999999999999999999997662                                                 


Q ss_pred             -------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 -------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                                     ...++||++|..++.+|+-++.++   ..+.|..-+.+.....+...+.
T Consensus       116 ~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRc---q~f~fkri~~~~I~~~L~~i~~  192 (515)
T COG2812         116 SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRC---QRFDFKRLDLEEIAKHLAAILD  192 (515)
T ss_pred             ccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcc---ccccccCCCHHHHHHHHHHHHH
Confidence                                           338999999999999999999854   3466777777776666666554

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.42  E-value=5.7e-07  Score=78.47  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=44.4

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ...++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .+-|.+....+..+++
T Consensus        19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~   76 (269)
T PRK11831         19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSR   76 (269)
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccCh
Confidence            345788899999888  8899999999999999999998766   5666666555554443

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=7.7e-07  Score=78.01  Aligned_cols=54  Identities=22%  Similarity=0.295  Sum_probs=43.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+....+...++
T Consensus        18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~   73 (277)
T PRK13652         18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENI   73 (277)
T ss_pred             ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence            4789999999999  7899999999999999999998877   6666665554444443

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=6.3e-07  Score=78.94  Aligned_cols=49  Identities=20%  Similarity=0.431  Sum_probs=41.4

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .+++++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i   71 (286)
T PRK13646         21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITI   71 (286)
T ss_pred             CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEC
Confidence            4899999999998  8899999999999999999998877   66666655444

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=6.7e-07  Score=78.61  Aligned_cols=57  Identities=23%  Similarity=0.170  Sum_probs=43.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.-...|-|.+.+..+...+.
T Consensus        21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~   79 (282)
T PRK13640         21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV   79 (282)
T ss_pred             cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence            4789999999999  88999999999999999999987651001556666555544443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=6.4e-07  Score=79.10  Aligned_cols=50  Identities=16%  Similarity=0.296  Sum_probs=42.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      .+++++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+...++.
T Consensus        21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~   72 (290)
T PRK13634         21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVIT   72 (290)
T ss_pred             cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECc
Confidence            4789999999999  8899999999999999999998877   676776665553

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.42  E-value=7.4e-07  Score=75.82  Aligned_cols=47  Identities=26%  Similarity=0.359  Sum_probs=37.3

Q ss_pred             HhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC----cccCceEEEEeecCc
Q 048723           23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY----DLVGEKGIVFTTNYV   72 (236)
Q Consensus        23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~----~~~~~~~vi~ttN~~   72 (236)
                      ++++++.+.+|  ++|+||+|+|||||+++|++.+.+    .   .|.|.+...++
T Consensus         2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~   54 (230)
T TIGR02770         2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPL   54 (230)
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEec
Confidence            46677887777  889999999999999999999876    4   55565555443

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.42  E-value=3.5e-07  Score=75.99  Aligned_cols=55  Identities=18%  Similarity=0.336  Sum_probs=43.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-+.+...++...+
T Consensus        12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~   68 (198)
T TIGR01189        12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQR   68 (198)
T ss_pred             CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccch
Confidence            345788899998888  8899999999999999999998766   566666555444443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.42  E-value=3.8e-07  Score=76.87  Aligned_cols=54  Identities=20%  Similarity=0.399  Sum_probs=42.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++...+.   .+-+.+....+..+++
T Consensus        18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~   73 (220)
T cd03245          18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDP   73 (220)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCH
Confidence            4788999998888  8899999999999999999998766   5656665554444444

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=7e-07  Score=76.79  Aligned_cols=64  Identities=19%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCccccchHHHh
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ....++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.  ....|-|.+..+++..++...++
T Consensus        14 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   81 (250)
T PRK14247         14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR   81 (250)
T ss_pred             CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence            3345788999999888  8899999999999999999988631  00145566666655555544333

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.42  E-value=1.8e-06  Score=83.38  Aligned_cols=44  Identities=11%  Similarity=0.205  Sum_probs=33.7

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .+.||++|+.++.+.+.++.  |. ..+.|..++.+.....++..+.
T Consensus       162 ~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~  205 (598)
T PRK09111        162 HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAA  205 (598)
T ss_pred             CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHH
Confidence            67788888888999888877  43 5688988888777766666543

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.41  E-value=2.3e-07  Score=89.40  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  ++++||+|||||||++.|++...+.   .|.+.+.+.++..+++..+|
T Consensus       355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~  414 (592)
T PRK10790        355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLR  414 (592)
T ss_pred             ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHH
Confidence            4788889998888  9999999999999999999999888   78888888888889887776

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.41  E-value=3.9e-07  Score=86.75  Aligned_cols=117  Identities=19%  Similarity=0.198  Sum_probs=68.4

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCCHH
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFE   97 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~   97 (236)
                      ..++.++++.+.+|  +.|+||||+|||||++.|++.+.+.   .+.|.+..+         ++.|.||....--.++..
T Consensus       335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~---------v~igyf~Q~~~~l~~~~t  402 (530)
T COG0488         335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET---------VKIGYFDQHRDELDPDKT  402 (530)
T ss_pred             ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc---------eEEEEEEehhhhcCccCc
Confidence            45788899988888  9999999999999999999999877   454444332         112222221111002221


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHcCCCCHHHHHHHHcccccccChHHHHHHH
Q 048723           98 AFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDADSCLKNL  152 (236)
Q Consensus        98 ~~~~i~~~~l~~~~~~~~~~i~~ll~~~gls~a~i~~~l~~~~~~~~~~~~~~~~  152 (236)
                      ....+...+.    ......++.++..++|++.++...+...|+++..++.+..+
T Consensus       403 ~~d~l~~~~~----~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~l  453 (530)
T COG0488         403 VLEELSEGFP----DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKL  453 (530)
T ss_pred             HHHHHHhhCc----cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHH
Confidence            1111111111    11144567777778888777765555555565555554443

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=7.3e-07  Score=78.56  Aligned_cols=48  Identities=19%  Similarity=0.267  Sum_probs=39.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      .++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .|-+.+....
T Consensus        25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~   74 (289)
T PRK13645         25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYA   74 (289)
T ss_pred             ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEE
Confidence            3788999999888  8899999999999999999998766   5555554443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=2.6e-06  Score=80.51  Aligned_cols=119  Identities=29%  Similarity=0.317  Sum_probs=90.6

Q ss_pred             hChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------------
Q 048723           18 EGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------   59 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------   59 (236)
                      ..+..+...+..++++++++||||||||+++++++.. +..+                                      
T Consensus         5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d   83 (494)
T COG0464           5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID   83 (494)
T ss_pred             cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence            4567888899999999999999999999999999997 2211                                      


Q ss_pred             --------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 --------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 --------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                                      .+.++++..+|.+..+|+++++++|++..+.+..|+...+..+...+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~  163 (494)
T COG0464          84 EIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHT  163 (494)
T ss_pred             hhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHH
Confidence                                            113667778999999999999999999999999999999888887765


Q ss_pred             cccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723          108 DIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus       108 ~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      .............++. +.+++++++...+.
T Consensus       164 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~  194 (494)
T COG0464         164 RLMFLGPPGTGKTLAARTVGKSGADLGALAK  194 (494)
T ss_pred             hcCCCcccccHHHHHHhcCCccHHHHHHHHH
Confidence            4332221222333333 66788877765553

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.40  E-value=1.5e-06  Score=73.53  Aligned_cols=45  Identities=24%  Similarity=0.338  Sum_probs=38.5

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT   68 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t   68 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|.|.+.
T Consensus        22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~   68 (224)
T TIGR02324        22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVR   68 (224)
T ss_pred             EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEe
Confidence            4789999999988  8899999999999999999998776   5555554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.40  E-value=7.6e-07  Score=76.61  Aligned_cols=58  Identities=26%  Similarity=0.393  Sum_probs=43.6

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHHH
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++..  .+.   .|-+.+....+..+++..+
T Consensus        20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~   81 (252)
T CHL00131         20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEPEER   81 (252)
T ss_pred             EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCChhhh
Confidence            45788999999988  8899999999999999999973  334   4555665555555555433

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.40  E-value=1.3e-06  Score=72.21  Aligned_cols=80  Identities=15%  Similarity=0.242  Sum_probs=58.8

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCCHHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA   98 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~   98 (236)
                      ...+.++|...+|  +.++|.+|||||||++.|++...+.   .+-+.+......-=|...+.. ++-+++.-+..++.-
T Consensus        27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~Dy~~R~k-~IRMiFQDpnts~NP  102 (267)
T COG4167          27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGDYSFRSK-RIRMIFQDPNTSLNP  102 (267)
T ss_pred             hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccchHhhhh-heeeeecCCccccCh
Confidence            3455678888888  8899999999999999999999988   788888877776667665542 564555555555555


Q ss_pred             HHHHHH
Q 048723           99 FMVLAK  104 (236)
Q Consensus        99 ~~~i~~  104 (236)
                      |..|-.
T Consensus       103 Rl~iGq  108 (267)
T COG4167         103 RLRIGQ  108 (267)
T ss_pred             hhhhhh
Confidence            554433

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.40  E-value=7.1e-07  Score=76.29  Aligned_cols=52  Identities=19%  Similarity=0.377  Sum_probs=42.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      +..++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+...++.
T Consensus        13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~   66 (240)
T PRK09493         13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVN   66 (240)
T ss_pred             CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECC
Confidence            345788999998888  8899999999999999999998766   566666554443

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.40  E-value=1.9e-06  Score=80.13  Aligned_cols=27  Identities=37%  Similarity=0.695  Sum_probs=23.9

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcC
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++.++|+||||||||++++.||..+.
T Consensus       193 ~~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            355699999999999999999998874

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.40  E-value=3.1e-07  Score=79.43  Aligned_cols=52  Identities=21%  Similarity=0.288  Sum_probs=41.8

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-|.+....+
T Consensus        16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~   69 (257)
T PRK10619         16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTI   69 (257)
T ss_pred             CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEc
Confidence            3445788999999988  7899999999999999999998766   56666655433

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.40  E-value=5.1e-07  Score=79.30  Aligned_cols=58  Identities=26%  Similarity=0.299  Sum_probs=47.3

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +.+++++++.+.+|  +.|+||+|+|||||+++|++.+. +   .|-|.+...++..++...+|
T Consensus        17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr   76 (275)
T cd03289          17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWR   76 (275)
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHh
Confidence            34789999999999  89999999999999999999987 5   46666766666667665554

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.39  E-value=1.1e-06  Score=75.61  Aligned_cols=52  Identities=21%  Similarity=0.321  Sum_probs=41.7

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .+..++.++++.+.+|  ++|+||||+|||||+++|++.+.+.   .+.|.+....+
T Consensus        14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~   67 (250)
T PRK11264         14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITI   67 (250)
T ss_pred             CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEc
Confidence            3445789999999988  8899999999999999999998766   56665554433

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=98.39  E-value=4.4e-06  Score=81.00  Aligned_cols=28  Identities=50%  Similarity=0.748  Sum_probs=25.1

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++.++|+|||||||||++++++..++..
T Consensus        37 ~~~~ll~G~pG~GKT~la~~la~~l~~~   64 (608)
T TIGR00764        37 KRNVLLIGEPGVGKSMLAKAMAELLPDE   64 (608)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence            3469999999999999999999999765

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.39  E-value=2.4e-06  Score=81.35  Aligned_cols=44  Identities=14%  Similarity=0.163  Sum_probs=33.9

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ...+|++|+++..++++++.  |- ..+.|..++.+.....+...+.
T Consensus       147 ~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~  190 (535)
T PRK08451        147 YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILE  190 (535)
T ss_pred             ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHH
Confidence            57788888889999999988  53 6788988888777666665544

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.38  E-value=6.4e-07  Score=77.44  Aligned_cols=61  Identities=23%  Similarity=0.265  Sum_probs=47.4

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+...++..+++..++
T Consensus        12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~   74 (256)
T TIGR03873        12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARA   74 (256)
T ss_pred             CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHh
Confidence            3445788999999888  8899999999999999999998776   56666666555555554443

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.38  E-value=3.4e-07  Score=76.39  Aligned_cols=55  Identities=18%  Similarity=0.334  Sum_probs=43.4

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL   75 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l   75 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+.|.+..+.....
T Consensus        11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~   67 (201)
T cd03231          11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQ   67 (201)
T ss_pred             CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccc
Confidence            3445788999999888  8899999999999999999998766   56666655544433

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.38  E-value=6.1e-07  Score=76.48  Aligned_cols=59  Identities=24%  Similarity=0.329  Sum_probs=46.1

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-+.+...++...++..++
T Consensus        15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~   75 (237)
T cd03252          15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLR   75 (237)
T ss_pred             ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHh
Confidence            34788999999988  8899999999999999999998776   56666666555555544333

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.38  E-value=2.2e-06  Score=76.06  Aligned_cols=107  Identities=16%  Similarity=0.177  Sum_probs=68.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-c-ccCceEEEEeecCccccchHHHh--cC-CcccEEeccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-D-LVGEKGIVFTTNYVDKLDPALIR--RG-RMDKRIEMSY   93 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~-~~~~~~vi~ttN~~~~ld~al~r--~g-R~d~~i~~~~   93 (236)
                      ..+++++|.+.+|  +.|+|.+|||||+++++|.+.+.. + ..-.+-+++.+.++-.++...++  +| ++.++++-+.
T Consensus        19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~   98 (316)
T COG0444          19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM   98 (316)
T ss_pred             EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence            4788999999999  889999999999999999999973 2 12245778888888888876432  22 3434443322


Q ss_pred             ----CCH---HHHHHHHHHhhcc-cchhhHHHHHHHHHcCCC
Q 048723           94 ----CCF---EAFMVLAKSYLDI-ESHAFFAEINSLLAETNM  127 (236)
Q Consensus        94 ----p~~---~~~~~i~~~~l~~-~~~~~~~~i~~ll~~~gl  127 (236)
                          |..   .+..+.++.|... ........+..+++..|+
T Consensus        99 ~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi  140 (316)
T COG0444          99 TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGI  140 (316)
T ss_pred             hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCC
Confidence                332   4444555555443 233334455555555544

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.38  E-value=1.8e-07  Score=76.60  Aligned_cols=52  Identities=25%  Similarity=0.360  Sum_probs=41.4

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL   75 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l   75 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++...+.   .+-+.+....+..+
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~   69 (178)
T cd03247          16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDL   69 (178)
T ss_pred             cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHH
Confidence            4788899999888  8899999999999999999998766   55566655444333

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.38  E-value=2.8e-07  Score=75.12  Aligned_cols=52  Identities=29%  Similarity=0.417  Sum_probs=41.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL   75 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l   75 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-+.+........
T Consensus        14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~   67 (173)
T cd03230          14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE   67 (173)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccc
Confidence            4788899998888  8899999999999999999998766   56666655444433

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.37  E-value=1.1e-06  Score=86.87  Aligned_cols=45  Identities=22%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 ~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      .+...+|++||..+     ..|+++.|  ||+ .|.++.|+.+++..|++.+.
T Consensus       313 ~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~  362 (758)
T PRK11034        313 SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK  362 (758)
T ss_pred             CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence            44788999998764     57999999  995 79999999999999988653

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.37  E-value=3e-07  Score=88.43  Aligned_cols=59  Identities=27%  Similarity=0.467  Sum_probs=50.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +..+++++++.+++|  +.++||+|||||||++.|++.. +.   .|-|.+.+.++..+++.-+|
T Consensus       362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr  422 (588)
T PRK11174        362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWR  422 (588)
T ss_pred             CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHH
Confidence            345788899998888  9999999999999999999999 66   67777788888899887776

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.37  E-value=8.3e-07  Score=88.99  Aligned_cols=44  Identities=23%  Similarity=0.279  Sum_probs=35.1

Q ss_pred             cCceEEEEeecCc-----cccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           60 VGEKGIVFTTNYV-----DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        60 ~~~~~vi~ttN~~-----~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                      .|...+|++|+..     -.+|++|+|  || ..|.+..|+.+....|++.+
T Consensus       314 ~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~  362 (852)
T TIGR03345       314 RGELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGL  362 (852)
T ss_pred             CCCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHH
Confidence            3467888888764     348999999  99 58999999999998886544

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.37  E-value=7.8e-07  Score=75.89  Aligned_cols=55  Identities=20%  Similarity=0.303  Sum_probs=43.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .++.++++.+++|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+..+++.
T Consensus        17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~   73 (238)
T cd03249          17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLR   73 (238)
T ss_pred             cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHH
Confidence            4788899998888  8899999999999999999998766   56666665555444443

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.37  E-value=4.9e-07  Score=88.75  Aligned_cols=60  Identities=20%  Similarity=0.331  Sum_probs=55.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRR   82 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~   82 (236)
                      +.+++++++.++.|  +.++|++|||||||+|.|.+...+.   .|-+.+...+...+|+.-+|+
T Consensus       486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~  547 (709)
T COG2274         486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRR  547 (709)
T ss_pred             cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHh
Confidence            46899999999999  9999999999999999999999988   899999999999999988883

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.37  E-value=4.2e-07  Score=75.84  Aligned_cols=59  Identities=31%  Similarity=0.461  Sum_probs=46.4

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHHH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      +..+++++++.+.+|  +.|+||+|+|||||+++|++..  .+.   .+-|.+...++..+++..+
T Consensus        12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~~~   74 (200)
T cd03217          12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPEER   74 (200)
T ss_pred             CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHHHH
Confidence            345788999999888  8899999999999999999985  344   5666676666776666543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=1.3e-06  Score=76.91  Aligned_cols=50  Identities=24%  Similarity=0.358  Sum_probs=42.6

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ..+++++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+.+.+.
T Consensus        19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~   70 (283)
T PRK13636         19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPI   70 (283)
T ss_pred             CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEEC
Confidence            45889999999998  8899999999999999999998776   66677766554

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.36  E-value=3.3e-06  Score=69.55  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=32.5

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                      ...+|+++|.+..+++++.+  |. ..+.+..|+.++...++...
T Consensus       126 ~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~  167 (188)
T TIGR00678       126 NTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ  167 (188)
T ss_pred             CeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence            57777888888899999888  55 57888888888777666654

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.36  E-value=5.8e-07  Score=74.87  Aligned_cols=52  Identities=25%  Similarity=0.423  Sum_probs=42.5

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      ...+++++++.+.+|  +.|+||+|+|||||+++|++...+.   .|-+.+...++.
T Consensus        13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~   66 (200)
T PRK13540         13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIK   66 (200)
T ss_pred             CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccc
Confidence            345789999999888  8899999999999999999998776   666666554443

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.36  E-value=6.2e-07  Score=76.34  Aligned_cols=59  Identities=19%  Similarity=0.370  Sum_probs=45.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..++.++++.+.+|  ++|+||||+|||||+++|++.+.+.   .|-|.+....+...+...++
T Consensus        14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~~   74 (236)
T cd03253          14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLR   74 (236)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHHH
Confidence            34788889998888  8899999999999999999998766   56666655555555544333

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.35  E-value=7e-07  Score=75.21  Aligned_cols=52  Identities=19%  Similarity=0.326  Sum_probs=42.2

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ....++.++++.+.+|  +.|+||||+|||||+++|++...+.   .|-|.+....+
T Consensus        22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i   75 (214)
T PRK13543         22 NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTA   75 (214)
T ss_pred             CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEc
Confidence            3445789999999888  8899999999999999999998776   56666655443

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.35  E-value=6.3e-07  Score=87.90  Aligned_cols=59  Identities=20%  Similarity=0.374  Sum_probs=53.4

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +.+++++++.+++|  +.++||+|||||||++.|++...+.   +|-|.+.+.++..+++.-+|
T Consensus       466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr  526 (686)
T TIGR03797       466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVR  526 (686)
T ss_pred             ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHH
Confidence            35788999999888  9999999999999999999999888   88899999899999988777

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.35  E-value=8.4e-07  Score=75.89  Aligned_cols=55  Identities=22%  Similarity=0.330  Sum_probs=42.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-+.+...++...+
T Consensus        12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~   68 (237)
T TIGR00968        12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVH   68 (237)
T ss_pred             CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCC
Confidence            445788999999888  8899999999999999999988766   555555544444443

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=1.1e-06  Score=76.95  Aligned_cols=53  Identities=15%  Similarity=0.197  Sum_probs=43.5

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+.+.++...+.
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~   76 (277)
T PRK13642         22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENV   76 (277)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCH
Confidence            789999999998  8999999999999999999999877   6666666655544443

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.35  E-value=3.6e-07  Score=86.86  Aligned_cols=57  Identities=21%  Similarity=0.348  Sum_probs=49.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.++||+|||||||++.|++...+.   .|-+.+.+.++..+ ..-+|
T Consensus       349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr  407 (529)
T TIGR02868       349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELR  407 (529)
T ss_pred             ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHH
Confidence            4788999999888  9999999999999999999999888   78888888777777 55555

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.35  E-value=3.7e-06  Score=74.98  Aligned_cols=44  Identities=14%  Similarity=0.094  Sum_probs=30.4

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ...+|++++.+..+.+.+.+  |. ..+.+..|+.+.+..++..++.
T Consensus       155 ~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~  198 (337)
T PRK12402        155 TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAE  198 (337)
T ss_pred             CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence            35566677666777777766  54 5678888888877777776544

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.35  E-value=6.8e-07  Score=87.93  Aligned_cols=59  Identities=20%  Similarity=0.314  Sum_probs=52.4

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +.+++++++.+++|  +.++||+|||||||++.|++...+.   .|-|.+...++..+++.-+|
T Consensus       487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr  547 (708)
T TIGR01193       487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLR  547 (708)
T ss_pred             CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHH
Confidence            45788889988888  9999999999999999999999888   78888888888889987777

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.34  E-value=5.7e-07  Score=78.25  Aligned_cols=61  Identities=13%  Similarity=0.256  Sum_probs=46.7

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-+.+....+...++..++
T Consensus        18 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~   80 (265)
T PRK10253         18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVA   80 (265)
T ss_pred             CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHh
Confidence            3445788999999999  8899999999999999999998776   56666655555555544433

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.34  E-value=2.9e-07  Score=87.26  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=47.7

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHH
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPAL   79 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al   79 (236)
                      |.+..++.+++|.+..|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+..+++..
T Consensus        15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~   76 (510)
T PRK09700         15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKL   76 (510)
T ss_pred             cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHH
Confidence            34445789999999999  8899999999999999999998776   566666665565565543

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.34  E-value=8.1e-07  Score=77.17  Aligned_cols=42  Identities=26%  Similarity=0.248  Sum_probs=34.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEE
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIV   66 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi   66 (236)
                      ..+.++++ +.+|  +.|+||||+|||||+++|++.+.+.   .|.|.
T Consensus        15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~   58 (255)
T cd03236          15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFD   58 (255)
T ss_pred             hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEe
Confidence            36778874 6667  8899999999999999999999877   56553

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=6.4e-07  Score=77.38  Aligned_cols=60  Identities=22%  Similarity=0.351  Sum_probs=45.6

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      .+..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+.+.+....+..+++..+
T Consensus        13 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~   74 (255)
T PRK11231         13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQL   74 (255)
T ss_pred             CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHH
Confidence            3445788999999888  8899999999999999999998766   5656655544444554433

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.34  E-value=1.7e-06  Score=73.08  Aligned_cols=55  Identities=20%  Similarity=0.323  Sum_probs=44.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ..++.++++.+.+|  ++|+||||+|||||+++|++.+.+.   .|-|.+....+..+++
T Consensus        18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~   74 (220)
T TIGR02982        18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASE   74 (220)
T ss_pred             eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCH
Confidence            34788999999988  8899999999999999999988766   6667766655555554

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.34  E-value=3.8e-06  Score=78.75  Aligned_cols=44  Identities=9%  Similarity=0.114  Sum_probs=33.3

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      +..++|+++|.+..+.+.++.  |. ..+.|..++.++....+....
T Consensus       150 ~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~  193 (451)
T PRK06305        150 QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIA  193 (451)
T ss_pred             CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence            367788888888999999888  54 568998888877766655543

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=9.4e-07  Score=79.51  Aligned_cols=59  Identities=20%  Similarity=0.289  Sum_probs=44.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc-cCceEEEEeecCccccchHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL-VGEKGIVFTTNYVDKLDPAL   79 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~-~~~~~vi~ttN~~~~ld~al   79 (236)
                      .++++++|.+.+|  +.|+||||||||||+++|++.+..+. ...|-|.+...++..+++.-
T Consensus        21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (330)
T PRK15093         21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE   82 (330)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence            4789999999999  88999999999999999999986311 11466666665666666543

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.33  E-value=2e-06  Score=73.74  Aligned_cols=60  Identities=23%  Similarity=0.285  Sum_probs=46.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHHHh
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++..  .+.   .|-+.+....+..+++..++
T Consensus        13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~   76 (248)
T PRK09580         13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPEDRA   76 (248)
T ss_pred             CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHHHHh
Confidence            345788999999888  8899999999999999999985  344   56666666666666665443

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.33  E-value=5.4e-07  Score=77.45  Aligned_cols=61  Identities=18%  Similarity=0.130  Sum_probs=43.5

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      +.....+.++++.+.+|  +.|+||+|+|||||+++|++.+.+.....|-|.+...++...+.
T Consensus        12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~   74 (246)
T PRK14269         12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV   74 (246)
T ss_pred             ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH
Confidence            33445788999999888  88999999999999999999875210114555555555444443

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.33  E-value=2.3e-06  Score=72.71  Aligned_cols=81  Identities=22%  Similarity=0.217  Sum_probs=50.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC---Cc--c------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN---YD--L------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~---~~--~------------------------------------------------   59 (236)
                      .+.|+||+|+|||.|+++|++...   +.  +                                                
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~  115 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRT  115 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHH
Confidence            389999999999999999998752   22  1                                                


Q ss_pred             -------------cCceEEEEeecCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchh
Q 048723           60 -------------VGEKGIVFTTNYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHA  113 (236)
Q Consensus        60 -------------~~~~~vi~ttN~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~  113 (236)
                                   .+..+|+.+...|..   +++.+..+-.-...+.+..|+.+.+..+++.+.......
T Consensus       116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~  185 (219)
T PF00308_consen  116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE  185 (219)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence                         334444444344444   567777722335678899999999999998876544433

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=5.6e-07  Score=78.27  Aligned_cols=57  Identities=19%  Similarity=0.330  Sum_probs=44.7

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      +..++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|.|.+.+.++...++.
T Consensus        23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~   81 (265)
T PRK10575         23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK   81 (265)
T ss_pred             CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHH
Confidence            345788999999988  8899999999999999999998766   56666665555444443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.33  E-value=5.4e-07  Score=85.53  Aligned_cols=60  Identities=28%  Similarity=0.352  Sum_probs=47.3

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+....+...++..+
T Consensus        22 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~   83 (510)
T PRK15439         22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKA   83 (510)
T ss_pred             CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHH
Confidence            3445789999999998  8899999999999999999998776   6667666655555554433

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.33  E-value=4.6e-06  Score=73.67  Aligned_cols=74  Identities=26%  Similarity=0.295  Sum_probs=53.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc-----c------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD-----L------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~-----~------------------------------------------------   59 (236)
                      .++|+||||||||++++++++.+..+     +                                                
T Consensus        40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~  119 (319)
T PRK00440         40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQ  119 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHH
Confidence            48999999999999999999875211     0                                                


Q ss_pred             ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                                .....+|+++|....+.+++.+  |. ..+.|..++.++...++..++..
T Consensus       120 ~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~  176 (319)
T PRK00440        120 QALRRTMEMYSQNTRFILSCNYSSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAEN  176 (319)
T ss_pred             HHHHHHHhcCCCCCeEEEEeCCccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHH
Confidence                      1245566777777777777776  55 45788888887777777766543

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.33  E-value=5e-07  Score=75.56  Aligned_cols=55  Identities=25%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ..+.++++.+.+|  +.|.||+|+|||||+++|++...+.   .+-+.+....+..++..
T Consensus        22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~   78 (207)
T cd03369          22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLE   78 (207)
T ss_pred             ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHH
Confidence            4788999999888  8899999999999999999998766   56666655555445443

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=6.4e-07  Score=86.46  Aligned_cols=58  Identities=21%  Similarity=0.383  Sum_probs=54.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .++++++|.+++|  +.|+||+|+||||++..|-+..++.   .|.|...+.++..+++.-+|
T Consensus       482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr  541 (716)
T KOG0058|consen  482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLR  541 (716)
T ss_pred             hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHH
Confidence            4899999999999  9999999999999999999999999   89999999999999998887

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.33  E-value=5.7e-07  Score=88.49  Aligned_cols=59  Identities=19%  Similarity=0.249  Sum_probs=52.5

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +.+++++++.+++|  +.++||+|||||||++.|++.+.+.   +|.|.+...+...+++.-+|
T Consensus       492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr  552 (710)
T TIGR03796       492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLA  552 (710)
T ss_pred             CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHH
Confidence            35788999999888  9999999999999999999999888   78888888888889887776

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=7.1e-07  Score=76.40  Aligned_cols=51  Identities=20%  Similarity=0.286  Sum_probs=41.9

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++...+.   .|-|.+...+
T Consensus        13 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~   65 (242)
T PRK11124         13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNH   65 (242)
T ss_pred             CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEe
Confidence            3445788999999888  8899999999999999999998766   5666665543

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.32  E-value=3.4e-06  Score=75.85  Aligned_cols=31  Identities=42%  Similarity=0.699  Sum_probs=27.6

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      -..+|+||.||||||||-||-+||.+|+.++
T Consensus        63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dv   93 (450)
T COG1224          63 MAGRGILIVGPPGTGKTALAMGIARELGEDV   93 (450)
T ss_pred             ccccEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence            3468899999999999999999999998554

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.32  E-value=1.8e-06  Score=83.93  Aligned_cols=44  Identities=20%  Similarity=0.303  Sum_probs=37.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      .++++++|.+.+|  +.|+||||||||||+++|++.+.+.   .+.+.+
T Consensus        30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~   75 (623)
T PRK10261         30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQC   75 (623)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEE
Confidence            4788999999999  8899999999999999999998766   455544

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.32  E-value=1.8e-06  Score=74.84  Aligned_cols=54  Identities=19%  Similarity=0.306  Sum_probs=40.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC--cccCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY--DLVGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~--~~~~~~~vi~ttN~~   72 (236)
                      +..+++++++.+.+|  +.|+||||+|||||+++|++.+.+  .....|-|.+....+
T Consensus        25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~   82 (260)
T PRK10744         25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI   82 (260)
T ss_pred             CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence            345788999999998  889999999999999999998752  101145555554444

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.32  E-value=1.2e-06  Score=73.29  Aligned_cols=50  Identities=24%  Similarity=0.443  Sum_probs=40.1

Q ss_pred             hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-+.+...++...++
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~   67 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPP   67 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCH
Confidence            677888888  8899999999999999999998776   6666666655554443

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.31  E-value=9.9e-07  Score=84.88  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=51.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.|+||+|+|||||++.|++...+.   .|-|.+.+.+...+++.-+|
T Consensus       354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r  413 (574)
T PRK11160        354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALR  413 (574)
T ss_pred             cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHH
Confidence            4788899988888  8999999999999999999999888   78788888888888887776

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=2.6e-06  Score=73.36  Aligned_cols=55  Identities=18%  Similarity=0.316  Sum_probs=40.8

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~   72 (236)
                      ....++.++++.+.+|  +.|+||||+|||||+++|++.+.+..  ...|-|.+....+
T Consensus        15 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i   73 (253)
T PRK14267         15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI   73 (253)
T ss_pred             CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence            3445789999999988  88999999999999999999986520  0135555554443

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=98.31  E-value=2.8e-06  Score=76.96  Aligned_cols=30  Identities=43%  Similarity=0.677  Sum_probs=25.3

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      -.|++||.||||||||.|+-+||.+|+.++
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~   78 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGEDV   78 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCCCC
Confidence            367899999999999999999999998665

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.31  E-value=9.3e-06  Score=69.55  Aligned_cols=95  Identities=22%  Similarity=0.343  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      .+|+.+.++...|..+.         +...+||+|..|||||+++|++-++..-..                        
T Consensus        67 ~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~  137 (287)
T COG2607          67 RQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR  137 (287)
T ss_pred             HHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcC
Confidence            35666666666665433         345599999999999999999999875443                        


Q ss_pred             ----------------------------------cCceEEEEeecCccccchHHHhc--------------------CCc
Q 048723           60 ----------------------------------VGEKGIVFTTNYVDKLDPALIRR--------------------GRM   85 (236)
Q Consensus        60 ----------------------------------~~~~~vi~ttN~~~~ld~al~r~--------------------gR~   85 (236)
                                                        ..+|+|.+|+|+-+.++..+...                    -||
T Consensus       138 ~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRF  217 (287)
T COG2607         138 PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRF  217 (287)
T ss_pred             CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhc
Confidence                                              34899999999998888644431                    155


Q ss_pred             ccEEecccCCHHHHHHHHHHhh
Q 048723           86 DKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        86 d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ...+.|..|+.+....++..|.
T Consensus       218 GLwL~F~~~~Q~~YL~~V~~~a  239 (287)
T COG2607         218 GLWLSFYPCDQDEYLKIVDHYA  239 (287)
T ss_pred             ceeecccCCCHHHHHHHHHHHH
Confidence            5556666666666655555553

>PRK05642 DNA replication initiation factor; Validated

Probab=98.31  E-value=3.1e-06  Score=72.59  Aligned_cols=75  Identities=16%  Similarity=0.120  Sum_probs=50.2

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC---Ccc-------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN---YDL-------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~---~~~-------------------------------------------------   59 (236)
                      +.++|+||+|||||.|++++++.+.   ..+                                                 
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~  125 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR  125 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence            5589999999999999999987542   111                                                 


Q ss_pred             ---cCceEEEEeecCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           60 ---VGEKGIVFTTNYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        60 ---~~~~~vi~ttN~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                         .+..+++.++..+..   +.|.++.+......+.+..|+.+.+..+++..
T Consensus       126 ~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k  178 (234)
T PRK05642        126 LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR  178 (234)
T ss_pred             HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence               223444444434433   35777773223567788888998888887743

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.31  E-value=1.7e-05  Score=79.59  Aligned_cols=74  Identities=24%  Similarity=0.295  Sum_probs=57.4

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcC----------Ccc---------------------------------------
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLN----------YDL---------------------------------------   59 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~----------~~~---------------------------------------   59 (236)
                      ..+++++|+||||||||++++.||..+.          ..+                                       
T Consensus       198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfi  277 (821)
T CHL00095        198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVI  277 (821)
T ss_pred             cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEE
Confidence            3456799999999999999999999863          222                                       


Q ss_pred             ---------------------------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723           60 ---------------------------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS  105 (236)
Q Consensus        60 ---------------------------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~  105 (236)
                                                 .|...+|++|+..+     ..|+++.+  ||. .|.+..|+.++...|++.
T Consensus       278 DEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~  352 (821)
T CHL00095        278 DEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFG  352 (821)
T ss_pred             ecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHH
Confidence                                       34678888888654     47899998  894 578888998887777664

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.30  E-value=6.7e-07  Score=77.71  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=39.2

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      ....++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .|-|.+
T Consensus        23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~   71 (257)
T PRK11247         23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLA   71 (257)
T ss_pred             CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEE
Confidence            3445788999999888  8899999999999999999998776   555554

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.30  E-value=1.4e-05  Score=72.20  Aligned_cols=45  Identities=16%  Similarity=0.201  Sum_probs=34.5

Q ss_pred             ceEEEEeecCcc---ccchHHHhcCCcc-cEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVD---KLDPALIRRGRMD-KRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~---~ld~al~r~gR~d-~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .+.+|+.+|.++   .+++.+.+  |+. ..+.|+.++.+++..+++..+.
T Consensus       165 ~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~  213 (365)
T TIGR02928       165 KVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE  213 (365)
T ss_pred             eEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence            467788888776   47777766  553 6788999999999999887764

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.30  E-value=4.5e-07  Score=74.37  Aligned_cols=56  Identities=23%  Similarity=0.430  Sum_probs=45.1

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ..++.++++.+.+|  ++|.||+|+|||||+++|++.+.+.   .+-|.+...++..+++.
T Consensus        12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~   69 (180)
T cd03214          12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK   69 (180)
T ss_pred             eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHH
Confidence            34788889988888  8899999999999999999998776   67677666555555554

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.30  E-value=1e-06  Score=73.04  Aligned_cols=49  Identities=14%  Similarity=0.331  Sum_probs=39.0

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      ++. +++.+.+|  ++|+||||+|||||+++|++.+.+.   .|-+.+...++..
T Consensus        16 l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~   66 (195)
T PRK13541         16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINN   66 (195)
T ss_pred             EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccCh
Confidence            444 78888888  8899999999999999999998777   6666666655433

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.30  E-value=8.8e-07  Score=86.26  Aligned_cols=39  Identities=33%  Similarity=0.537  Sum_probs=34.4

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ..++.++++.+.+|  +.|+||||||||||+++|++.+.+.
T Consensus       332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~  372 (635)
T PRK11147        332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD  372 (635)
T ss_pred             eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            34788888888888  8899999999999999999988665

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.29  E-value=7.7e-06  Score=79.42  Aligned_cols=28  Identities=39%  Similarity=0.612  Sum_probs=24.7

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ....+||+||+|+||||+++++|+.+..
T Consensus        37 l~~a~Lf~Gp~G~GKttlA~~lAk~L~c   64 (620)
T PRK14948         37 IAPAYLFTGPRGTGKTSSARILAKSLNC   64 (620)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhcC
Confidence            3456999999999999999999999864

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.29  E-value=2.3e-06  Score=81.53  Aligned_cols=53  Identities=26%  Similarity=0.344  Sum_probs=42.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .+++++++.+.+|  +.|+||+|||||||+++|++.+. +   .|-|.+.+..+..+++
T Consensus       300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~~~~~  354 (529)
T PRK15134        300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLHNLNR  354 (529)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEccccch
Confidence            4788999999999  88999999999999999999874 4   4566665555544443

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.29  E-value=1.5e-06  Score=75.64  Aligned_cols=54  Identities=17%  Similarity=0.165  Sum_probs=40.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~   72 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.+.++.  ...|-|.+....+
T Consensus        31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i   88 (267)
T PRK14235         31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI   88 (267)
T ss_pred             CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC
Confidence            345788899999888  88999999999999999999986410  0145555555444

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.29  E-value=3e-06  Score=78.13  Aligned_cols=28  Identities=32%  Similarity=0.520  Sum_probs=24.5

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++..++|+||||+||||+++++|+.+..
T Consensus        37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c   64 (397)
T PRK14955         37 VGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (397)
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4556999999999999999999998843

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.28  E-value=1.3e-06  Score=83.70  Aligned_cols=58  Identities=24%  Similarity=0.347  Sum_probs=50.5

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  ++++||+|+|||||++.|++...+.   .|.|.+.+.+...++...+|
T Consensus       346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~  405 (571)
T TIGR02203       346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLR  405 (571)
T ss_pred             ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHH
Confidence            3688889988888  8999999999999999999999888   78888888888888876655

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.28  E-value=1.9e-06  Score=78.21  Aligned_cols=45  Identities=24%  Similarity=0.373  Sum_probs=36.8

Q ss_pred             hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ++++.+..|  ++|+||||+|||||+++|++.+.+.   .|-+.+....+
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i   61 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTL   61 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEC
Confidence            677888877  8899999999999999999998876   56666655443

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.27  E-value=5.8e-06  Score=79.87  Aligned_cols=43  Identities=12%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ..+||+.++..+.+.+.+..  |. ..+.|..++......++....
T Consensus       150 ~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a  192 (585)
T PRK14950        150 HAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIA  192 (585)
T ss_pred             CeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHH
Confidence            56777778888888887776  44 457888787776666655543

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=1.9e-06  Score=75.17  Aligned_cols=38  Identities=29%  Similarity=0.396  Sum_probs=33.7

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ...+++++++.+.+|  +.|+||||||||||+++|++...
T Consensus        25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            345788999999888  88999999999999999999875

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.27  E-value=1.6e-06  Score=85.22  Aligned_cols=58  Identities=21%  Similarity=0.375  Sum_probs=51.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.++||+|||||||++.|++...+.   .|.|.+.+.+...+++.-+|
T Consensus       479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr  538 (694)
T TIGR03375       479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLR  538 (694)
T ss_pred             cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHH
Confidence            4788899988888  9999999999999999999999888   78888888888888887776

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.26  E-value=1.2e-06  Score=83.23  Aligned_cols=58  Identities=24%  Similarity=0.325  Sum_probs=51.5

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.++||+|||||||++.|++...+.   .|.+.+...+...+++.-+|
T Consensus       336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr  395 (529)
T TIGR02857       336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWR  395 (529)
T ss_pred             ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHH
Confidence            4788899999888  8999999999999999999999888   78888888888888876666

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.26  E-value=6.5e-06  Score=79.82  Aligned_cols=43  Identities=12%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ..++|+.++....+.+.+.++  - ..+.|..++.+.....+...+
T Consensus       157 ~tv~IL~t~~~~kLl~TI~SR--c-~~vef~~l~~~ei~~~L~~i~  199 (620)
T PRK14954        157 HAIFIFATTELHKIPATIASR--C-QRFNFKRIPLDEIQSQLQMIC  199 (620)
T ss_pred             CeEEEEEeCChhhhhHHHHhh--c-eEEecCCCCHHHHHHHHHHHH
Confidence            566777777788888888873  3 568888888777665555443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=7.8e-07  Score=86.71  Aligned_cols=39  Identities=31%  Similarity=0.270  Sum_probs=34.5

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ..++.++++.+.+|  +.|+||||||||||+++|++.+.+.
T Consensus       325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~  365 (638)
T PRK10636        325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV  365 (638)
T ss_pred             eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            34778888888888  8899999999999999999998766

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.26  E-value=1e-06  Score=74.23  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=44.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      .++.++++.+++|  +.|+||+|+|||||+++|++...+.   .+-|.+....+..++..-+
T Consensus        18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~   76 (221)
T cd03244          18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHDL   76 (221)
T ss_pred             ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHHH
Confidence            4789999999998  8899999999999999999988766   5666666555555554333

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.25  E-value=3.1e-06  Score=72.87  Aligned_cols=55  Identities=20%  Similarity=0.284  Sum_probs=40.2

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-cc-cCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-DL-VGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~~-~~~~~vi~ttN~~   72 (236)
                      ....++.++++.+.+|  ++|+||+|+|||||+++|++.... +. ...|-|.+....+
T Consensus        17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i   75 (253)
T PRK14242         17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI   75 (253)
T ss_pred             CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence            3345788999999988  889999999999999999998641 10 0145555555444

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.25  E-value=2.2e-06  Score=73.92  Aligned_cols=56  Identities=29%  Similarity=0.437  Sum_probs=43.1

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+.++++.+.+|  +.|+||||+|||||+++|++.+. +   .|.|.+...++...++..++
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~   68 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELA   68 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHh
Confidence            578889999888  88999999999999999999873 3   45666666555555554443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.25  E-value=1e-06  Score=83.34  Aligned_cols=58  Identities=24%  Similarity=0.296  Sum_probs=45.1

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      |.+..++.++++.+..|  +.|+||+|+|||||+++|++.+.+.   .|.|.+....+...++
T Consensus        14 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~   73 (501)
T PRK10762         14 FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGP   73 (501)
T ss_pred             eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence            34445788999999888  8899999999999999999998777   6666665544444433

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.25  E-value=1.5e-06  Score=83.68  Aligned_cols=59  Identities=22%  Similarity=0.370  Sum_probs=51.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +.+++++++.+++|  ++++||+|||||||++.|++...+.   .|.+.+...++..+++..+|
T Consensus       348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r  408 (588)
T PRK13657        348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLR  408 (588)
T ss_pred             CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHH
Confidence            34788888888888  9999999999999999999999888   78888888888888877666

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.25  E-value=7.1e-06  Score=73.87  Aligned_cols=43  Identities=12%  Similarity=0.166  Sum_probs=34.3

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                      +..++|++|++++.+.|.++.  |- ..+.|..|+.+.....+...
T Consensus       135 ~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~  177 (328)
T PRK05707        135 GDTVLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQWLQQA  177 (328)
T ss_pred             CCeEEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHh
Confidence            478999999999999999988  44 55888888887776665544

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.25  E-value=2.3e-06  Score=73.77  Aligned_cols=40  Identities=23%  Similarity=0.328  Sum_probs=35.3

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+
T Consensus        18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   59 (254)
T PRK14273         18 TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDL   59 (254)
T ss_pred             CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence            3445789999999988  889999999999999999999865

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.24  E-value=8.7e-07  Score=74.27  Aligned_cols=50  Identities=24%  Similarity=0.404  Sum_probs=40.5

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++...+.   .|-|.+....
T Consensus        14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~   65 (207)
T PRK13539         14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGD   65 (207)
T ss_pred             CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEe
Confidence            345788899999888  8899999999999999999998766   5656555443

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.24  E-value=4.7e-06  Score=71.59  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=34.0

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ...+.++++.+.+|  +.|+||||+|||||+++|++.+.+
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p   53 (247)
T TIGR00972        14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDL   53 (247)
T ss_pred             eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            34788999999999  889999999999999999999864

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.24  E-value=1.3e-06  Score=86.24  Aligned_cols=58  Identities=21%  Similarity=0.289  Sum_probs=51.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.|+||+|+||||+++.|++...+.   +|.|.+.+.++..++..-+|
T Consensus       495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr  554 (711)
T TIGR00958       495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLH  554 (711)
T ss_pred             ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHH
Confidence            4788899998888  9999999999999999999999888   78888888888888876666

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.24  E-value=4.1e-06  Score=72.44  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~   72 (236)
                      ...++.++++.+.+|  ++|+||||+|||||++.|++.+.++.  ...+.|.+...++
T Consensus        16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~   73 (258)
T PRK14241         16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL   73 (258)
T ss_pred             CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence            345788899999888  88999999999999999999886410  0145555544443

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.24  E-value=2.5e-06  Score=73.34  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=39.9

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-c-ccCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-D-LVGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~-~~~~~~vi~ttN~~   72 (236)
                      +..++.++++.+.+|  +.|+||||+|||||+++|++.+.+ + +...+-|.+....+
T Consensus        15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~   72 (250)
T PRK14240         15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI   72 (250)
T ss_pred             CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence            345788999999888  889999999999999999998652 1 01145555555444

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.23  E-value=2.3e-06  Score=84.09  Aligned_cols=58  Identities=24%  Similarity=0.377  Sum_probs=51.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .++.++++.+++|  +.++||+|||||||++.|++...+.   +|-|.+.+.++..++..-+|
T Consensus       471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r  530 (694)
T TIGR01846       471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLR  530 (694)
T ss_pred             cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHH
Confidence            4788899988888  9999999999999999999999888   78888888888899987776

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.23  E-value=2.1e-06  Score=75.22  Aligned_cols=59  Identities=15%  Similarity=0.240  Sum_probs=42.5

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCcccc
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYVDKL   75 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~~~l   75 (236)
                      +....++.++++.+.+|  +.|+||+|+|||||+++|++.+.+..  ...+-|.+....+...
T Consensus        31 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~   93 (276)
T PRK14271         31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY   93 (276)
T ss_pred             ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence            33445788999999888  88999999999999999999886410  0145555555444333

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.22  E-value=2.6e-07  Score=71.78  Aligned_cols=55  Identities=29%  Similarity=0.495  Sum_probs=41.9

Q ss_pred             hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +++++.+++|  ++|+||+|||||||+++|++...+.   .+.+.+....+...+...++
T Consensus         2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~   58 (137)
T PF00005_consen    2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELR   58 (137)
T ss_dssp             EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHH
T ss_pred             CceEEEEcCCCEEEEEccCCCccccceeeeccccccc---cccccccccccccccccccc
Confidence            4566667777  8899999999999999999998776   67777766666555444444

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.22  E-value=2.8e-06  Score=72.34  Aligned_cols=50  Identities=26%  Similarity=0.480  Sum_probs=39.3

Q ss_pred             hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-+.+..+.+...++
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~   68 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPP   68 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCCh
Confidence            678888888  8899999999999999999998776   5666666555444443

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.22  E-value=1.8e-06  Score=78.39  Aligned_cols=44  Identities=18%  Similarity=0.372  Sum_probs=36.3

Q ss_pred             hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ++++.+.+|  +.|+||+|||||||+++|++.+.++   .|.+.+....
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~   61 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRV   61 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEE
Confidence            677888777  8899999999999999999998777   5666655543

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.22  E-value=1.9e-06  Score=82.61  Aligned_cols=63  Identities=22%  Similarity=0.372  Sum_probs=52.6

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMD   86 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d   86 (236)
                      ..+++++++.+++|  +.++||+||||||+++.|++..++.   .|.|.....++..++..-+|. ++.
T Consensus       342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~-~I~  406 (567)
T COG1132         342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRK-RIG  406 (567)
T ss_pred             CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHH-hcc
Confidence            46889999999888  8899999999999999999999987   566666777888888877763 444

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.22  E-value=2.3e-06  Score=82.10  Aligned_cols=57  Identities=21%  Similarity=0.215  Sum_probs=49.2

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ++.++++.+++|  +.|+||+|+||||+++.|++...++   .|.|.+.+.++..++..-+|
T Consensus       357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~~~~  415 (555)
T TIGR01194       357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYR  415 (555)
T ss_pred             eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHH
Confidence            678888888888  8999999999999999999999888   78788888788888765555

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=4e-06  Score=72.96  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=33.5

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +..+++++++.+.+|  ++|+||||+|||||+++|++.+.
T Consensus        33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   72 (268)
T PRK14248         33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMND   72 (268)
T ss_pred             CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            445788899999888  88999999999999999999764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.21  E-value=1.8e-06  Score=81.62  Aligned_cols=57  Identities=19%  Similarity=0.224  Sum_probs=43.8

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC--cccCceEEEEeecCccccch
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY--DLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~--~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ....++.++++.+..|  +.|+||+|+|||||+++|++.+.+  .   .|.|.+....+...++
T Consensus        12 ~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~   72 (500)
T TIGR02633        12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNI   72 (500)
T ss_pred             CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCH
Confidence            3445789999999998  889999999999999999998865  3   4556665555544444

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.21  E-value=1.8e-06  Score=83.02  Aligned_cols=58  Identities=26%  Similarity=0.378  Sum_probs=48.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..++++++.+++|  +.++||+|||||||++.|++...+.   .|-+.+...+...+++.-+|
T Consensus       329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~  388 (569)
T PRK10789        329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWR  388 (569)
T ss_pred             ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHH
Confidence            4788888888888  8999999999999999999999877   67777777677777766555

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.21  E-value=1.2e-06  Score=74.20  Aligned_cols=55  Identities=22%  Similarity=0.384  Sum_probs=44.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .++.++++.+++|  ++|+||+|+|||||+++|++.+.+.   .+-|.+....+...+..
T Consensus        28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~   84 (226)
T cd03248          28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHK   84 (226)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHH
Confidence            4789999999988  8899999999999999999998776   56666665555444443

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=1.4e-06  Score=75.78  Aligned_cols=56  Identities=18%  Similarity=0.170  Sum_probs=41.5

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCc
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYV   72 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~   72 (236)
                      +....++.++++.+++|  +.|+||+|+|||||+++|++.+.+.  +...+-|.+...++
T Consensus        18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i   77 (261)
T PRK14263         18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV   77 (261)
T ss_pred             eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence            34445788899999988  8899999999999999999998641  00145555555444

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.21  E-value=5.7e-06  Score=78.83  Aligned_cols=56  Identities=18%  Similarity=0.210  Sum_probs=42.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCccccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~~~ld   76 (236)
                      .++.++++.+..|  +.|+||+|||||||+++|++.+.+..  ...|-|.+....+..++
T Consensus        23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~   82 (529)
T PRK15134         23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS   82 (529)
T ss_pred             eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence            5789999999998  88999999999999999999987510  01455555555544444

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.20  E-value=1e-06  Score=74.88  Aligned_cols=54  Identities=26%  Similarity=0.396  Sum_probs=42.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .++.++++.+++|  +.|+||+|+|||||+++|++.+.+.   .|-+.+....+...++
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~   71 (234)
T cd03251          16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTL   71 (234)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCH
Confidence            4788899998888  8899999999999999999998766   5656655544444443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.20  E-value=4e-06  Score=70.89  Aligned_cols=49  Identities=27%  Similarity=0.453  Sum_probs=39.7

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ...++.++++.+.+|  ++|+||||+|||||+++|++.+.+.   .|-|.+...
T Consensus        12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~   62 (223)
T TIGR03740        12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGH   62 (223)
T ss_pred             CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCE
Confidence            345788888888888  8899999999999999999998766   565555443

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13949 shikimate kinase; Provisional

Probab=98.20  E-value=4.6e-06  Score=68.06  Aligned_cols=27  Identities=33%  Similarity=0.422  Sum_probs=25.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .++|+|||||||||+++.||..++.++
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~   29 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSF   29 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence            489999999999999999999999886

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.20  E-value=4.2e-06  Score=73.24  Aligned_cols=49  Identities=24%  Similarity=0.362  Sum_probs=41.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+...++
T Consensus        16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~   66 (275)
T PRK13639         16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPI   66 (275)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEC
Confidence            4788999999998  8899999999999999999998776   66666665544

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.20  E-value=8.2e-07  Score=74.23  Aligned_cols=54  Identities=26%  Similarity=0.312  Sum_probs=41.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC---CcccCceEEEEeecCccccc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN---YDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~---~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ..++.++++.+.+|  ++|+||||+|||||+++|++.+.   +.   .+-+.+...++...+
T Consensus        20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~   78 (202)
T cd03233          20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFA   78 (202)
T ss_pred             ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccch
Confidence            35788899998888  88999999999999999999987   44   455555554444443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.19  E-value=8.4e-07  Score=74.08  Aligned_cols=72  Identities=21%  Similarity=0.299  Sum_probs=61.7

Q ss_pred             HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCccc
Q 048723           11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDK   87 (236)
Q Consensus        11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~   87 (236)
                      +.+...|+.+.+..++++...+|  +-|.||+|+||||.-..+.+...++   .+.|++...++..+|..-+.  |+..
T Consensus         8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RA--rlGi   81 (243)
T COG1137           8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRA--RLGI   81 (243)
T ss_pred             hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHh--hcCc
Confidence            44566678888999999999999  7899999999999999999998888   89999999999999976554  6643

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.19  E-value=2e-06  Score=81.45  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=44.7

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC--cccCceEEEEeecCccccch
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY--DLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~--~~~~~~~vi~ttN~~~~ld~   77 (236)
                      |.+..++.++++.+..|  +.|+||+|+|||||+++|++.+.+  .   .|.|.+....+...++
T Consensus        15 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~   76 (506)
T PRK13549         15 FGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNI   76 (506)
T ss_pred             eCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCH
Confidence            34445789999999998  889999999999999999999875  3   4556665555544443

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.19  E-value=2.2e-06  Score=87.18  Aligned_cols=66  Identities=21%  Similarity=0.365  Sum_probs=58.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIE   90 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~   90 (236)
                      .+++++++.++.|  +.|+||+||||||++..|.+..++.   .|-|...++++..++...+|. ++..+..
T Consensus       367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~-~iglV~Q  434 (1228)
T KOG0055|consen  367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRS-QIGLVSQ  434 (1228)
T ss_pred             hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHh-hcCeeee
Confidence            6899999999999  8999999999999999999999999   899999999999999887775 5654443

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.19  E-value=2.7e-06  Score=69.51  Aligned_cols=28  Identities=39%  Similarity=0.451  Sum_probs=26.5

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +.++|+|++|+||||+.+.||..|+++|
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F   30 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPF   30 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence            4589999999999999999999999999

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=98.19  E-value=2.1e-05  Score=76.50  Aligned_cols=28  Identities=43%  Similarity=0.740  Sum_probs=24.7

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++.++|+|||||||||++++++..+...
T Consensus        50 ~~~~l~~G~~G~GKttla~~l~~~l~~~   77 (637)
T PRK13765         50 RRHVMMIGSPGTGKSMLAKAMAELLPKE   77 (637)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHcChH
Confidence            3469999999999999999999998654

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.19  E-value=5.8e-06  Score=83.11  Aligned_cols=42  Identities=19%  Similarity=0.173  Sum_probs=34.0

Q ss_pred             ceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           62 EKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        62 ~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                      ...+|++|+..+     .+|+++.|  ||. .|.++.|+.+++..|++.+
T Consensus       302 ~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~  348 (852)
T TIGR03346       302 ELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGL  348 (852)
T ss_pred             ceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHH
Confidence            467788887663     47999999  994 5889999999998888765

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.19  E-value=3.7e-06  Score=72.42  Aligned_cols=38  Identities=18%  Similarity=0.414  Sum_probs=33.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ...++.++++.+.+|  +.|+||||||||||+++|++.+.
T Consensus        16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (252)
T PRK14256         16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHD   55 (252)
T ss_pred             CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            345788999998888  88999999999999999999875

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.18  E-value=3.9e-06  Score=70.48  Aligned_cols=48  Identities=23%  Similarity=0.362  Sum_probs=38.4

Q ss_pred             HhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      +.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|-|.+...++.
T Consensus        14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~   63 (213)
T TIGR01277        14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHT   63 (213)
T ss_pred             ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcc
Confidence            45778888878  8999999999999999999998777   566666554443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.18  E-value=3e-06  Score=74.27  Aligned_cols=64  Identities=19%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc-----cCceEEEEeecCccccchHHHh
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL-----VGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~-----~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ....+++++++.+.+|  +.|+||+|+|||||+++|++.+.+..     .-.+-|.+....+..+++..++
T Consensus        12 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (272)
T PRK13547         12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLA   82 (272)
T ss_pred             CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHH
Confidence            3445789999998888  88999999999999999999886530     0034555555555555544333

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.18  E-value=7.4e-07  Score=71.49  Aligned_cols=65  Identities=25%  Similarity=0.308  Sum_probs=55.4

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +....++.++++++.+|  +-|.||+|||||||...+++.+...|.-.+-+.....+++.+|.+-+.
T Consensus        12 l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq   78 (213)
T COG4136          12 LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ   78 (213)
T ss_pred             CCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence            34566788899999999  779999999999999999999999987778888888888888876444

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.17  E-value=1.8e-06  Score=81.84  Aligned_cols=48  Identities=15%  Similarity=0.180  Sum_probs=39.7

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      +++++++.+.+|  +.|+||||||||||+++|++.+.+.   .|-|.+....+
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~  327 (510)
T PRK09700        278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDI  327 (510)
T ss_pred             cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEEC
Confidence            688899999999  8899999999999999999998776   56665554333

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.17  E-value=4.3e-06  Score=72.01  Aligned_cols=54  Identities=20%  Similarity=0.281  Sum_probs=39.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~   72 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++...+.  ....|.|.+...++
T Consensus        16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i   73 (251)
T PRK14270         16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI   73 (251)
T ss_pred             CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence            345788899998888  8899999999999999999987541  00145555544444

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.17  E-value=1.1e-06  Score=85.70  Aligned_cols=49  Identities=24%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT   68 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t   68 (236)
                      |....+|.+++|.+.+|  +.|+||||||||||+++|++.+.++   .|.|.+.
T Consensus        11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~   61 (638)
T PRK10636         11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFP   61 (638)
T ss_pred             eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEec
Confidence            45556899999999998  8999999999999999999988776   5555543

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.17  E-value=4e-06  Score=72.70  Aligned_cols=55  Identities=22%  Similarity=0.343  Sum_probs=41.2

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .+..++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.....+-|.+....+
T Consensus        15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~   71 (262)
T PRK09984         15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV   71 (262)
T ss_pred             CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence            3445788999999888  889999999999999999999865411124555554443

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.17  E-value=4.3e-06  Score=72.20  Aligned_cols=50  Identities=24%  Similarity=0.317  Sum_probs=40.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC----cccCceEEEEeecCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY----DLVGEKGIVFTTNYV   72 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~----~~~~~~~vi~ttN~~   72 (236)
                      ..+++++++.+.+|  ++|+||||+|||||+++|++.+.+    .   .|-|.+....+
T Consensus        16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i   71 (254)
T PRK10418         16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPV   71 (254)
T ss_pred             cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeec
Confidence            34788999999988  889999999999999999999876    4   45555554443

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.17  E-value=3e-06  Score=80.99  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .++.++++.+++|  +.++||+|||||||++.|++.+.+.   .|-+.+...+...+++..+|
T Consensus       332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~  391 (544)
T TIGR01842       332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFG  391 (544)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHh
Confidence            4688888888888  9999999999999999999999877   67777777677777776555

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.17  E-value=1.6e-06  Score=81.98  Aligned_cols=49  Identities=14%  Similarity=0.210  Sum_probs=39.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .+++++++.+.+|  +.|+||||||||||+++|++.+.+.   .+-|.+....+
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~  317 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPI  317 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEEC
Confidence            3678889998888  8899999999999999999998766   55555544333

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.17  E-value=2.9e-06  Score=80.39  Aligned_cols=49  Identities=16%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-cccCceEEEEeecCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-DLVGEKGIVFTTNYV   72 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~~~~~~~vi~ttN~~   72 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+ .   .|-|.+...++
T Consensus       276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~  327 (506)
T PRK13549        276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPV  327 (506)
T ss_pred             ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEEC
Confidence            4788999999999  789999999999999999999874 4   45555544433

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.17  E-value=5.6e-06  Score=71.66  Aligned_cols=39  Identities=26%  Similarity=0.411  Sum_probs=34.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.+.+
T Consensus        24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~   64 (258)
T PRK14268         24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL   64 (258)
T ss_pred             CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence            345788999999988  889999999999999999998764

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.17  E-value=1.3e-06  Score=73.63  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=43.5

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ..++.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .+-|.+....+..++
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~   69 (218)
T cd03290          14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPS   69 (218)
T ss_pred             CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCccccccc
Confidence            35788999999888  8899999999999999999998776   566666555554443

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=98.16  E-value=8.7e-06  Score=76.46  Aligned_cols=49  Identities=20%  Similarity=0.190  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhh-hChhHHhhhC--CCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723            7 EEIKKDLKKFS-EGKEYCAKIG--KAWKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus         7 ~~i~~~v~~~~-~~~~~~~~~~--~~~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..|.+.+...+ ...++++.+.  +.....++|.||||||||+++++|+...
T Consensus        12 ~~l~~~l~~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~   63 (498)
T PRK13531         12 SRLSSALEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF   63 (498)
T ss_pred             HHHHHHHhhhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence            33444444444 3344444433  2234449999999999999999999754

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.16  E-value=1.4e-05  Score=77.66  Aligned_cols=44  Identities=9%  Similarity=0.096  Sum_probs=32.4

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ..++|++|+....+-+.++.  |- ..+.|..++.+.....+...+.
T Consensus       151 ~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~  194 (614)
T PRK14971        151 YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVAS  194 (614)
T ss_pred             CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHH
Confidence            56777888778889888888  43 5588888888777766665443

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=98.16  E-value=2.6e-06  Score=71.55  Aligned_cols=26  Identities=38%  Similarity=0.704  Sum_probs=20.4

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      .+++|+||||||||++++.|...+..
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~lLP~   48 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSLLPP   48 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHCS--
T ss_pred             CCeEEECCCCCCHHHHHHHHHHhCCC
Confidence            46999999999999999999988753

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.16  E-value=4.1e-06  Score=78.98  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=43.4

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      |....++.++++.+..|  +.|+||||+|||||+++|++.+.+.   .|.+.+....+...+
T Consensus        13 ~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~   71 (490)
T PRK10938         13 LSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLS   71 (490)
T ss_pred             cCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCC
Confidence            33445789999999888  8899999999999999999998776   555555444433333

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.16  E-value=4e-05  Score=68.30  Aligned_cols=75  Identities=13%  Similarity=0.141  Sum_probs=56.9

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcCC--------cc-----------------------------------------
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLNY--------DL-----------------------------------------   59 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~--------~~-----------------------------------------   59 (236)
                      ..+..++|+||+|+|||++++.++..+..        ++                                         
T Consensus        24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad  103 (313)
T PRK05564         24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSE  103 (313)
T ss_pred             CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechh
Confidence            34556999999999999999999997522        11                                         


Q ss_pred             -----------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           60 -----------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        60 -----------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                                       ....++|++|++++.+.|.++.+|   ..+.|..++.+.....+...
T Consensus       104 ~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc---~~~~~~~~~~~~~~~~l~~~  164 (313)
T PRK05564        104 KMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC---QIYKLNRLSKEEIEKFISYK  164 (313)
T ss_pred             hcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc---eeeeCCCcCHHHHHHHHHHH
Confidence                             236677777788899999988844   56888888887776555544

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.16  E-value=2.1e-06  Score=81.04  Aligned_cols=57  Identities=21%  Similarity=0.287  Sum_probs=45.2

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      |.+..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|.|.+.+..+...+
T Consensus         8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~   66 (491)
T PRK10982          8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKS   66 (491)
T ss_pred             eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCC
Confidence            33445789999999988  8899999999999999999998776   666766665554443

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.15  E-value=7.5e-06  Score=72.16  Aligned_cols=52  Identities=19%  Similarity=0.360  Sum_probs=40.1

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC----cccCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY----DLVGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~----~~~~~~~vi~ttN~~   72 (236)
                      ...+++++++.+.+|  ++|+||+|+|||||+++|++.+.+    +.  .|-|.+..+.+
T Consensus        51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~--~G~I~i~G~~i  108 (285)
T PRK14254         51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV--EGELTFRGKNV  108 (285)
T ss_pred             CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCC--ceEEEECCEEc
Confidence            345788999999888  889999999999999999999863    21  45555544443

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.15  E-value=4.2e-06  Score=79.27  Aligned_cols=39  Identities=28%  Similarity=0.461  Sum_probs=30.6

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .....++.+.+....|  ++|+|||||||||+++.|++.+.
T Consensus       195 Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp  235 (506)
T PRK09862        195 GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP  235 (506)
T ss_pred             CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence            3445666666666666  99999999999999999987654

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.15  E-value=7.4e-06  Score=83.44  Aligned_cols=143  Identities=16%  Similarity=0.200  Sum_probs=92.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecccCCHHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA   98 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~   98 (236)
                      .+++++++.++.|  +.|+||+||||||++..|-+..+++   .|.|.....++.+++..-+|. .+.  +--.-|..=.
T Consensus      1004 ~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~-~i~--lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRK-QIG--LVSQEPVLFN 1077 (1228)
T ss_pred             hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHH-hcc--eeccCchhhc
Confidence            5899999999888  9999999999999999999999999   899999999999999887773 221  1112233211


Q ss_pred             HHHHHHHhhcccchhhHHHH---HHHHH-------------------cCCCCHHHHHHHHcccccccChH-HHHHHHHHH
Q 048723           99 FMVLAKSYLDIESHAFFAEI---NSLLA-------------------ETNMASADVAENLMPKSDEEDAD-SCLKNLIEA  155 (236)
Q Consensus        99 ~~~i~~~~l~~~~~~~~~~i---~~ll~-------------------~~gls~a~i~~~l~~~~~~~~~~-~~~~~~~~~  155 (236)
                      ...--+..++... ....++   .+++.                   -..+|++|-++..++++...+|. +.+...-+|
T Consensus      1078 ~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1078 GTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred             ccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence            1111122223111 111111   11111                   22578999888888877666665 455666777


Q ss_pred             HHHHHHHHhhhHHHH
Q 048723          156 LKVAKEEARKNAEEE  170 (236)
Q Consensus       156 L~~~~~~~~~~~~~~  170 (236)
                      |....++.=+++-++
T Consensus      1157 LDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDR 1171 (1228)
T ss_pred             hhhhhHHHHHHHHHH
Confidence            777666655444443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.15  E-value=2.9e-06  Score=80.57  Aligned_cols=54  Identities=17%  Similarity=0.225  Sum_probs=42.4

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .+.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|.|.+....+...++.
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~  333 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTA  333 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHH
Confidence            477888888888  7899999999999999999998766   56666655544444443

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.14  E-value=4.4e-06  Score=79.90  Aligned_cols=58  Identities=26%  Similarity=0.332  Sum_probs=49.5

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..++++++.+++|  +.|+||+|+|||||++.|++...+.   .|.+.+...+...+++.-+|
T Consensus       337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~  396 (547)
T PRK10522        337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYR  396 (547)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHh
Confidence            3688888888888  9999999999999999999999887   78788877777777776555

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.14  E-value=5.2e-06  Score=71.89  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=39.9

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC--cccCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY--DLVGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~--~~~~~~~vi~ttN~~   72 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.+.+  .....+-|.+...++
T Consensus        24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~   81 (259)
T PRK14274         24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI   81 (259)
T ss_pred             CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence            345788899998888  889999999999999999998763  110135555544443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.14  E-value=2.7e-06  Score=64.29  Aligned_cols=37  Identities=32%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      +.++|+|||||||||+++.|+..+....  ..+++++.+
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~   39 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGE   39 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCE
Confidence            4589999999999999999999998761  134444443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.14  E-value=7.3e-05  Score=68.29  Aligned_cols=45  Identities=13%  Similarity=0.206  Sum_probs=32.1

Q ss_pred             ceEEEEeecCcc---ccchHHHhcCCc-ccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVD---KLDPALIRRGRM-DKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~---~ld~al~r~gR~-d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .+.+|+.+|..+   .+++.+..  |+ ...|.|+.++.++...+++.++.
T Consensus       173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~  221 (394)
T PRK00411        173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE  221 (394)
T ss_pred             eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence            455788887664   46776665  44 35678888899988888887653

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.14  E-value=9.8e-06  Score=69.67  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=40.4

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-c-ccCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-D-LVGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~-~~~~~~vi~ttN~~   72 (236)
                      ....++.++++.+.+|  +.|+||||+|||||+++|++.+.. + ....+-+.+....+
T Consensus        14 ~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~   72 (250)
T PRK14262         14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI   72 (250)
T ss_pred             CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence            3445788999999988  889999999999999999998763 1 00145555554443

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.14  E-value=1.1e-05  Score=67.44  Aligned_cols=48  Identities=21%  Similarity=0.438  Sum_probs=40.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ...++++++.+..|  +.+.||+|||||||+..+|+...+.   .+.+.....
T Consensus        18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r   67 (259)
T COG4525          18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGR   67 (259)
T ss_pred             hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCE
Confidence            35789999999988  7889999999999999999999877   565555443

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=98.14  E-value=5.9e-05  Score=66.59  Aligned_cols=29  Identities=41%  Similarity=0.676  Sum_probs=26.4

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .|++||.||||||||-|+-+|+.+++..+
T Consensus        64 GravLlaGppgtGKTAlAlaisqELG~kv   92 (456)
T KOG1942|consen   64 GRAVLLAGPPGTGKTALALAISQELGPKV   92 (456)
T ss_pred             CcEEEEecCCCCchhHHHHHHHHHhCCCC
Confidence            57799999999999999999999998655

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.13  E-value=2e-06  Score=75.03  Aligned_cols=58  Identities=22%  Similarity=0.111  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhh--hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723            7 EEIKKDLKKFS--EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus         7 ~~i~~~v~~~~--~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      +++......+.  ....++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|.+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~   83 (264)
T PRK13546         22 ERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDR   83 (264)
T ss_pred             HHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEE
Confidence            44544444342  3345788999999999  8899999999999999999998766   444443

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=5.2e-06  Score=71.57  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=34.3

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .+..++.++++.+.+|  +.|+||||+|||||+++|++...
T Consensus        17 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14261         17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMND   57 (253)
T ss_pred             CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence            3445789999999998  88999999999999999999865

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=98.12  E-value=5.5e-05  Score=68.38  Aligned_cols=43  Identities=19%  Similarity=0.128  Sum_probs=33.6

Q ss_pred             eEEEEeecCcc-ccchHHHhcCCcccEEecccCCH-HHHHHHHHHhh
Q 048723           63 KGIVFTTNYVD-KLDPALIRRGRMDKRIEMSYCCF-EAFMVLAKSYL  107 (236)
Q Consensus        63 ~~vi~ttN~~~-~ld~al~r~gR~d~~i~~~~p~~-~~~~~i~~~~l  107 (236)
                      .++++++|..+ .++++++.  ||..++.+++|.. +++..|++...
T Consensus       175 ~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~  219 (337)
T TIGR02030       175 FVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRT  219 (337)
T ss_pred             EEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhh
Confidence            46677777655 69999999  9999999999975 77777777643

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=4.7e-06  Score=71.62  Aligned_cols=55  Identities=16%  Similarity=0.180  Sum_probs=40.6

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYV   72 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~   72 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++...+..  ...+-+.+...++
T Consensus        14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~   72 (249)
T PRK14253         14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI   72 (249)
T ss_pred             CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEc
Confidence            3445789999999988  88999999999999999999876420  0135555544443

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.12  E-value=1.4e-05  Score=64.96  Aligned_cols=59  Identities=20%  Similarity=0.302  Sum_probs=46.9

Q ss_pred             HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      .+..||+....+-++.+..+.|  ++|.||+|.|||+|++.+.-.--+.   ++-+.++.|+-+
T Consensus         7 ~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd   67 (242)
T COG4161           7 GINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFD   67 (242)
T ss_pred             ccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccc
Confidence            3566777888888999998888  8899999999999999987655555   677777766543

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.12  E-value=3.2e-05  Score=77.84  Aligned_cols=32  Identities=19%  Similarity=0.284  Sum_probs=26.2

Q ss_pred             cchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           75 LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        75 ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      +.|+++.  |+|.++.|..++.+....|+..++.
T Consensus       749 f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~  780 (857)
T PRK10865        749 FRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ  780 (857)
T ss_pred             ccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence            4567777  8999999999999888888887763

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=5.1e-06  Score=78.65  Aligned_cols=58  Identities=26%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..+.++++.++.|  +.|+||+||||||++..|++.+.+.   .|.+.+...+.+.+++.-+|
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~  394 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWR  394 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHH
Confidence            5788888888888  8999999999999999999999987   88899998899999987777

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.12  E-value=2.8e-06  Score=80.43  Aligned_cols=56  Identities=21%  Similarity=0.276  Sum_probs=43.8

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      .+..++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .|.|.+...++...+
T Consensus        15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~   72 (501)
T PRK11288         15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFAS   72 (501)
T ss_pred             CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCC
Confidence            3445788999999998  8899999999999999999988766   566666554443333

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.12  E-value=3.8e-06  Score=79.53  Aligned_cols=53  Identities=13%  Similarity=0.207  Sum_probs=42.1

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .++++++.+.+|  +.|+||||+|||||+++|++.+.++   .|-|.+....+...++
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~  321 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSP  321 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence            478888888888  7899999999999999999998776   6666665544444443

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=7.3e-06  Score=71.09  Aligned_cols=42  Identities=21%  Similarity=0.396  Sum_probs=36.7

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.+..++.++++.+.+|  ++|+||||+|||||+++|++...++
T Consensus        20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~   63 (257)
T PRK14246         20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY   63 (257)
T ss_pred             cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            34556889999999888  8999999999999999999988765

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.11  E-value=1.3e-05  Score=75.22  Aligned_cols=106  Identities=18%  Similarity=0.283  Sum_probs=67.1

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC-----Ccc-----------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN-----YDL-----------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~-----~~~-----------------------------------------------   59 (236)
                      .+++|+||+|+|||+|+++|++.+.     ..+                                               
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k  221 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK  221 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCC
Confidence            4599999999999999999999652     211                                               


Q ss_pred             ---------------cCceEEEEeecCc-c---ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccch--hhHHH-
Q 048723           60 ---------------VGEKGIVFTTNYV-D---KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESH--AFFAE-  117 (236)
Q Consensus        60 ---------------~~~~~vi~ttN~~-~---~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~--~~~~~-  117 (236)
                                     ..+..+|+|+|.+ .   .+++.++.+-.-+..+.+..|+.+.+..+++..+.....  .+..+ 
T Consensus       222 ~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~ev  301 (450)
T PRK14087        222 EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEA  301 (450)
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence                           1134566666533 2   356777772223577789999999999999987754321  22222 


Q ss_pred             HHHHHHcCCCCHHHHHHHHc
Q 048723          118 INSLLAETNMASADVAENLM  137 (236)
Q Consensus       118 i~~ll~~~gls~a~i~~~l~  137 (236)
                      +..++...+=++..+...|.
T Consensus       302 l~~Ia~~~~gd~R~L~gaL~  321 (450)
T PRK14087        302 INFISNYYSDDVRKIKGSVS  321 (450)
T ss_pred             HHHHHHccCCCHHHHHHHHH
Confidence            33333444445555554443

>smart00350 MCM minichromosome maintenance proteins

Probab=98.11  E-value=9.7e-06  Score=77.10  Aligned_cols=44  Identities=18%  Similarity=0.152  Sum_probs=34.5

Q ss_pred             ceEEEEeecCcc-------------ccchHHHhcCCcccEEe-cccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVD-------------KLDPALIRRGRMDKRIE-MSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~-------------~ld~al~r~gR~d~~i~-~~~p~~~~~~~i~~~~l  107 (236)
                      ...+|+++|+..             .||+++++  |||.++. .++|+.+....|.++.+
T Consensus       343 ~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~  400 (509)
T smart00350      343 RCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV  400 (509)
T ss_pred             CcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence            456888898763             58999999  9998764 57899888888887643

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.11  E-value=3.1e-06  Score=80.65  Aligned_cols=45  Identities=18%  Similarity=0.338  Sum_probs=37.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      ..++.++++.+..|  +.|+||||+|||||+++|++.+.+.   .|-|.+
T Consensus       332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~  378 (530)
T PRK15064        332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKW  378 (530)
T ss_pred             ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE
Confidence            34678888888888  8899999999999999999988766   455544

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.11  E-value=3.7e-05  Score=77.13  Aligned_cols=22  Identities=36%  Similarity=0.889  Sum_probs=21.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+||+|+|||+++++||..+
T Consensus       542 ~lf~Gp~GvGKt~lA~~LA~~l  563 (821)
T CHL00095        542 FLFSGPTGVGKTELTKALASYF  563 (821)
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            8899999999999999999976

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.10  E-value=6.9e-06  Score=71.42  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=34.2

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .+..++.++++.+.+|  +.|+||+|+|||||+++|++...
T Consensus        21 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   61 (264)
T PRK14243         21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLND   61 (264)
T ss_pred             CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3445788999999888  88999999999999999999875

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.10  E-value=4.7e-06  Score=71.78  Aligned_cols=40  Identities=23%  Similarity=0.382  Sum_probs=35.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ...++.++++.+.+|  ++|+||+|+|||||++.|++.+.+.
T Consensus        16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~   57 (251)
T PRK14249         16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV   57 (251)
T ss_pred             CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence            345788999998888  8899999999999999999988654

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.10  E-value=9.8e-06  Score=69.43  Aligned_cols=48  Identities=21%  Similarity=0.196  Sum_probs=43.0

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ...+++++|.+.+|  +-|+|+||+|||||++.||+.+.++   .|.+.++..
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~   89 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGK   89 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcce
Confidence            35789999999999  8899999999999999999999999   777877654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.10  E-value=7.7e-06  Score=70.35  Aligned_cols=39  Identities=26%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ....++.++++.+.+|  +.|+||||+|||||+++|++.+.
T Consensus        15 ~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            3445788899999888  88999999999999999999875

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=98.09  E-value=5.5e-05  Score=68.62  Aligned_cols=43  Identities=19%  Similarity=0.138  Sum_probs=34.2

Q ss_pred             eEEEEeecCcc-ccchHHHhcCCcccEEecccCC-HHHHHHHHHHhh
Q 048723           63 KGIVFTTNYVD-KLDPALIRRGRMDKRIEMSYCC-FEAFMVLAKSYL  107 (236)
Q Consensus        63 ~~vi~ttN~~~-~ld~al~r~gR~d~~i~~~~p~-~~~~~~i~~~~l  107 (236)
                      .++++|.|..+ .++++++.  ||..++.+.+|. .+.+..|++...
T Consensus       188 fiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~  232 (350)
T CHL00081        188 FVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRT  232 (350)
T ss_pred             EEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhh
Confidence            45566667655 59999999  999999999998 588888887754

>PLN03073 ABC transporter F family; Provisional

Probab=98.09  E-value=3.6e-06  Score=83.06  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=33.3

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++.++++.+.+|  +.|+||||||||||+++|++.+.+.
T Consensus       524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~  562 (718)
T PLN03073        524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS  562 (718)
T ss_pred             eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            677888888888  8899999999999999999998766

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.09  E-value=8.5e-06  Score=71.53  Aligned_cols=44  Identities=18%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             ceEEEEeecCcc---ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVD---KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~---~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ++.++++.|...   .+++.++|  .| .++.++.|+.+....|+..++.
T Consensus       148 ~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~  194 (272)
T PF12775_consen  148 DIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ  194 (272)
T ss_dssp             SEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred             eeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence            678888887643   47888888  67 7889999998888888776654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.09  E-value=6.3e-06  Score=71.79  Aligned_cols=40  Identities=28%  Similarity=0.440  Sum_probs=34.8

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ....+++++++.+.+|  +.|+||+|+|||||+++|++.+.+
T Consensus        31 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~   72 (267)
T PRK14237         31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDT   72 (267)
T ss_pred             CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence            3445788999999888  889999999999999999998863

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.09  E-value=9.5e-06  Score=77.13  Aligned_cols=38  Identities=26%  Similarity=0.444  Sum_probs=33.9

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ....++.++++.+.+|  +.|+||+|||||||+++|++.+
T Consensus        11 ~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   50 (520)
T TIGR03269        11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            3445789999999998  8999999999999999999986

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.08  E-value=7e-06  Score=70.65  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=34.2

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ....++.++++.+.+|  +.|+||+|+|||||+++|++...
T Consensus        16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~   56 (251)
T PRK14244         16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMND   56 (251)
T ss_pred             CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3445788999999888  88999999999999999999875

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.08  E-value=2.6e-06  Score=72.21  Aligned_cols=49  Identities=18%  Similarity=0.352  Sum_probs=39.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC---CcccCceEEEEeecC
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN---YDLVGEKGIVFTTNY   71 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~---~~~~~~~~vi~ttN~   71 (236)
                      ..++.++++.+.+|  +.|+||||+|||||+++|++.+.   +.   .+.+.+.+.+
T Consensus        20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~   73 (226)
T cd03234          20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQP   73 (226)
T ss_pred             cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEE
Confidence            45788999998888  88999999999999999999987   45   5555554433

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.07  E-value=3.1e-06  Score=70.15  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=38.0

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC--CcccCceEEEEeecC
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN--YDLVGEKGIVFTTNY   71 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~--~~~~~~~~vi~ttN~   71 (236)
                      ..++.++++.+.+|  +.|+||||+|||||+++|++...  +.   .+.+.+....
T Consensus        20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~   72 (192)
T cd03232          20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRP   72 (192)
T ss_pred             eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEe
Confidence            34788899988888  88999999999999999999753  33   4555554433

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=1.4e-05  Score=75.11  Aligned_cols=57  Identities=19%  Similarity=0.322  Sum_probs=52.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      ..+.++++.+.+|  +.++|++||||||+++.|++.++++   .|-+.+.+-.+..+|+.-+
T Consensus       352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~  410 (573)
T COG4987         352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQAL  410 (573)
T ss_pred             chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhH
Confidence            5899999999999  9999999999999999999999999   8999999989999988533

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.07  E-value=4.4e-06  Score=79.00  Aligned_cols=49  Identities=16%  Similarity=0.238  Sum_probs=39.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC-cccCceEEEEeecCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY-DLVGEKGIVFTTNYV   72 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~-~~~~~~~vi~ttN~~   72 (236)
                      .+++++++.+.+|  +.|+||||+|||||+++|++.+.+ .   .|-|.+....+
T Consensus       274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~  325 (500)
T TIGR02633       274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPV  325 (500)
T ss_pred             cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEEC
Confidence            4788999999998  889999999999999999999874 4   45555544333

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.06  E-value=3e-06  Score=70.42  Aligned_cols=50  Identities=24%  Similarity=0.318  Sum_probs=40.8

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~   72 (236)
                      ..++.++++.+.+|  ++|+||+|+|||||+++|++.+  .+.   .+-|.+....+
T Consensus        22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~   75 (194)
T cd03213          22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPL   75 (194)
T ss_pred             ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeC
Confidence            45889999999888  8899999999999999999998  655   56666554433

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.06  E-value=8.5e-06  Score=70.79  Aligned_cols=39  Identities=26%  Similarity=0.392  Sum_probs=34.2

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+.+
T Consensus        28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   68 (265)
T PRK14252         28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL   68 (265)
T ss_pred             CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence            345788999998888  889999999999999999998764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.06  E-value=1.5e-05  Score=75.58  Aligned_cols=143  Identities=12%  Similarity=0.107  Sum_probs=88.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc-cCceEEEEeecCccccchHHHhc---CCcccEEeccc-
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL-VGEKGIVFTTNYVDKLDPALIRR---GRMDKRIEMSY-   93 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~-~~~~~vi~ttN~~~~ld~al~r~---gR~d~~i~~~~-   93 (236)
                      ..+++++|.+.+|  +.|+|.+||||||++.+|.+.+.... ...|-|++.+.++..++.+-+|.   .++.++++-+. 
T Consensus        23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~  102 (539)
T COG1123          23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT  102 (539)
T ss_pred             eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence            4688999999999  88999999999999999999998762 23567777777777787755532   13433333222 


Q ss_pred             ---CCH---HHHHHHHHHhhcccchhhHHHHHHHHHcC-------------CCCHHHHHHHHcccccccChH--------
Q 048723           94 ---CCF---EAFMVLAKSYLDIESHAFFAEINSLLAET-------------NMASADVAENLMPKSDEEDAD--------  146 (236)
Q Consensus        94 ---p~~---~~~~~i~~~~l~~~~~~~~~~i~~ll~~~-------------gls~a~i~~~l~~~~~~~~~~--------  146 (236)
                         |..   .+..+.+..|..........++..+++..             .||+++-++.+++++....|.        
T Consensus       103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT  182 (539)
T COG1123         103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT  182 (539)
T ss_pred             hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence               222   34444444454333344444555555544             457777776666533332221        


Q ss_pred             -----HHHHHHHHHHHHHHHHH
Q 048723          147 -----SCLKNLIEALKVAKEEA  163 (236)
Q Consensus       147 -----~~~~~~~~~L~~~~~~~  163 (236)
                           ..-..++..|++..++.
T Consensus       183 TaLDvt~q~qIL~llk~l~~e~  204 (539)
T COG1123         183 TALDVTTQAQILDLLKDLQREL  204 (539)
T ss_pred             cccCHHHHHHHHHHHHHHHHHc
Confidence                 23445666666665444

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.05  E-value=1.2e-05  Score=69.53  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+.+
T Consensus        19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~   59 (259)
T PRK14260         19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL   59 (259)
T ss_pred             CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            345788999999888  889999999999999999998764

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.05  E-value=5.8e-06  Score=79.81  Aligned_cols=58  Identities=19%  Similarity=0.298  Sum_probs=48.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .++.++++.+++|  +.++||+|+|||||++.|++...+.   .|-+.+.+.+...+++..+|
T Consensus       349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~  408 (585)
T TIGR01192       349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLR  408 (585)
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHH
Confidence            4688888888888  8999999999999999999999877   67777777777777776555

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.05  E-value=6.2e-06  Score=72.65  Aligned_cols=53  Identities=21%  Similarity=0.290  Sum_probs=38.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC--CcccCceEEEEeecCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN--YDLVGEKGIVFTTNYV   72 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~--~~~~~~~~vi~ttN~~   72 (236)
                      ..++.++++.+.+|  ++|+||+|+|||||+++|++...  +.....|.|.+....+
T Consensus        52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i  108 (286)
T PRK14275         52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI  108 (286)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEh
Confidence            34788899998888  88999999999999999999754  2000145555554433

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.05  E-value=2.4e-06  Score=72.06  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=32.6

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +++++++.+.+|  +.|+||||+|||||+++|++...+.
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~   40 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD   40 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence            467788888888  8899999999999999999998766

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.05  E-value=3.1e-06  Score=68.61  Aligned_cols=45  Identities=29%  Similarity=0.480  Sum_probs=37.6

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      ..+++++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .+.+.+
T Consensus        14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~   60 (166)
T cd03223          14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGM   60 (166)
T ss_pred             CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEE
Confidence            34788899998888  8899999999999999999998766   454444

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.04  E-value=5.1e-06  Score=79.63  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++.++++.+..|  +.|+||||||||||+++|++.+.+.
T Consensus       336 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~  375 (552)
T TIGR03719       336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD  375 (552)
T ss_pred             eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence            4678888888888  8899999999999999999988665

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.04  E-value=3e-06  Score=73.34  Aligned_cols=57  Identities=21%  Similarity=0.240  Sum_probs=44.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      .++.++++.+.+|  +.|+||+|+|||||+++|++.+.+.   .+-+.+....+..+++..+
T Consensus        35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~   93 (257)
T cd03288          35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHTL   93 (257)
T ss_pred             cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHHH
Confidence            4788899998888  8899999999999999999988766   5556665555555554433

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.04  E-value=7.1e-06  Score=78.72  Aligned_cols=58  Identities=28%  Similarity=0.440  Sum_probs=50.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  ++++||+|+|||||++.|++.+.+.   .|.+.+...+++.+++.-+|
T Consensus       354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~  413 (576)
T TIGR02204       354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELR  413 (576)
T ss_pred             ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHH
Confidence            3788889998888  9999999999999999999999887   77788888778888876665

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.04  E-value=8.3e-05  Score=74.89  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=25.7

Q ss_pred             cchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           75 LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        75 ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      +.|.++.  |+|.++.|..++.+....|+...+.
T Consensus       746 F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~  777 (852)
T TIGR03346       746 FRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG  777 (852)
T ss_pred             cCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence            4456665  9999999999999999988887653

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.04  E-value=1.1e-05  Score=72.37  Aligned_cols=39  Identities=33%  Similarity=0.611  Sum_probs=32.1

Q ss_pred             EECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           36 LYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        36 L~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      |+||+|||||||+++|++...+.   .|-|.+....+..+++
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~   39 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPP   39 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCH
Confidence            58999999999999999999877   6777777666655555

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.04  E-value=3.1e-06  Score=64.28  Aligned_cols=25  Identities=40%  Similarity=0.809  Sum_probs=22.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.|+..++..
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~~   26 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGFP   26 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCe
Confidence            6899999999999999999988655

...

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.04  E-value=7.8e-05  Score=75.01  Aligned_cols=22  Identities=45%  Similarity=0.853  Sum_probs=21.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+||||+|||.++++||..+
T Consensus       599 ~lf~Gp~GvGKT~lA~~La~~l  620 (852)
T TIGR03345       599 FLLVGPSGVGKTETALALAELL  620 (852)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999988

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.04  E-value=3.3e-06  Score=70.39  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=34.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++.++++.+++|  +.|.||+|+|||||+++|++...+.
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~   58 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL   58 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence            4789999999988  8899999999999999999998766

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=9.5e-06  Score=76.40  Aligned_cols=58  Identities=19%  Similarity=0.422  Sum_probs=51.0

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +.+++.+++.+++|  +.++|+|||||||++++|-+.+++    .|-|...+.+++.++..-+|
T Consensus       365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~~SlR  424 (591)
T KOG0057|consen  365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSLESLR  424 (591)
T ss_pred             CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhChHHhh
Confidence            45899999999999  999999999999999999999994    47778888888888877677

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.03  E-value=1.8e-05  Score=66.40  Aligned_cols=44  Identities=27%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             hhCCCCC-cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           25 KIGKAWK-RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        25 ~~~~~~~-rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ++++.+. .-+.|+||+|+|||||+++|++.+.+.   .|-+.+...+
T Consensus        16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~   60 (214)
T cd03297          16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTV   60 (214)
T ss_pred             CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEe
Confidence            5554443 448899999999999999999998766   5555554443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.03  E-value=1.5e-05  Score=68.54  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=33.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++...
T Consensus        15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (250)
T PRK14266         15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND   54 (250)
T ss_pred             CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            345788899998888  88999999999999999999864

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.03  E-value=1.4e-05  Score=69.86  Aligned_cols=39  Identities=23%  Similarity=0.376  Sum_probs=34.1

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +..++.++++.+.+|  +.|+||+|+|||||+++|++.+..
T Consensus        37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~   77 (272)
T PRK14236         37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL   77 (272)
T ss_pred             CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            345788899999888  889999999999999999998763

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=98.03  E-value=5.1e-05  Score=67.02  Aligned_cols=26  Identities=46%  Similarity=0.760  Sum_probs=23.7

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +..+||+||||+|||+++.++|+.+.
T Consensus        24 ~halL~~Gp~G~Gktt~a~~lA~~l~   49 (325)
T COG0470          24 PHALLFYGPPGVGKTTAALALAKELL   49 (325)
T ss_pred             CceeeeeCCCCCCHHHHHHHHHHHHh
Confidence            34699999999999999999999987

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.02  E-value=5.2e-06  Score=79.68  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+.
T Consensus       338 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~  377 (556)
T PRK11819        338 LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD  377 (556)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            4678888888888  8899999999999999999988766

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.02  E-value=2.5e-06  Score=74.52  Aligned_cols=47  Identities=23%  Similarity=0.276  Sum_probs=38.9

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      ..++.++++.+.+|  ++|+||||+|||||+++|++.+.+.   .|-|.+..
T Consensus        20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g   68 (272)
T PRK15056         20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILG   68 (272)
T ss_pred             cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECC
Confidence            45788999998888  8899999999999999999998766   55555544

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.02  E-value=1.1e-05  Score=72.61  Aligned_cols=53  Identities=23%  Similarity=0.295  Sum_probs=39.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc--ccCceEEEEeecCcc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD--LVGEKGIVFTTNYVD   73 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~--~~~~~~vi~ttN~~~   73 (236)
                      .++.++++.+.+|  ++|+||+|||||||+++|++.....  ....|-|.+.+..+.
T Consensus        96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~  152 (329)
T PRK14257         96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR  152 (329)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            4788899999988  8999999999999999999987531  001455555554443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.02  E-value=3.3e-06  Score=80.40  Aligned_cols=51  Identities=22%  Similarity=0.247  Sum_probs=42.0

Q ss_pred             HhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723           15 KFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT   68 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t   68 (236)
                      ..+....+|.++++.+..|  |.|+|+||+|||||+++|++.+.+.   .+-|...
T Consensus        11 ~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~   63 (530)
T COG0488          11 LAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRP   63 (530)
T ss_pred             EeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeec
Confidence            3456777899999888887  9999999999999999999999777   4544443

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.01  E-value=1.1e-05  Score=69.40  Aligned_cols=55  Identities=18%  Similarity=0.151  Sum_probs=39.6

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC--CcccCceEEEEeecCcc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN--YDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~--~~~~~~~~vi~ttN~~~   73 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++..+  ++....|-|.+...++.
T Consensus        15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~   73 (250)
T PRK14245         15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY   73 (250)
T ss_pred             CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence            345788899999888  88999999999999999998743  21001355555554443

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.01  E-value=7e-06  Score=86.66  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      .+++++++.+++|  +.|+||+||||||+++.|.+...+
T Consensus      1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            4789999998888  999999999999999999999987

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.00  E-value=3.2e-06  Score=73.15  Aligned_cols=41  Identities=27%  Similarity=0.480  Sum_probs=35.7

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+..++.++++.+.+|  +.|+||||+|||||+++|++.+.+.
T Consensus        15 ~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~   57 (251)
T PRK09544         15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD   57 (251)
T ss_pred             CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            3445788899998888  8899999999999999999998766

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=97.99  E-value=2e-05  Score=76.98  Aligned_cols=55  Identities=22%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ..++++++.+.+|  ++|+||||||||||+++|++.+.+.   .+-+.+...++..++.+
T Consensus        22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~   78 (648)
T PRK10535         22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDAD   78 (648)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHH
Confidence            4788999888888  8999999999999999999998877   67777777666666654

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=8.4e-05  Score=73.25  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             chHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           76 DPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        76 d~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .|.++.  |+|.+|.|...+.+....|+..++.
T Consensus       676 ~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~  706 (786)
T COG0542         676 RPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN  706 (786)
T ss_pred             CHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence            456666  9999999999999999999888764

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=97.99  E-value=1.8e-05  Score=68.06  Aligned_cols=38  Identities=24%  Similarity=0.425  Sum_probs=33.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++...
T Consensus        17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (252)
T PRK14239         17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND   56 (252)
T ss_pred             CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence            345788999999888  88999999999999999999753

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.98  E-value=3.6e-06  Score=66.75  Aligned_cols=44  Identities=30%  Similarity=0.337  Sum_probs=36.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      ..+.++++.+.+|  ++|.||+|+|||||+++|++.+.+.   .+.|.+
T Consensus        14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~   59 (144)
T cd03221          14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTW   59 (144)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEE
Confidence            4677888888888  7899999999999999999998766   555544

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.98  E-value=1.9e-05  Score=72.25  Aligned_cols=124  Identities=14%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc--cCceEEEEeecCccccchHHHhc---CCcccEEec
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL--VGEKGIVFTTNYVDKLDPALIRR---GRMDKRIEM   91 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~--~~~~~vi~ttN~~~~ld~al~r~---gR~d~~i~~   91 (236)
                      ....+++++|++.+|  +.|+|.+|||||..+.+|.+.+..+.  ...+-+.+.+.+.-.+++.-+|.   .|+.++|.-
T Consensus        22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE  101 (534)
T COG4172          22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE  101 (534)
T ss_pred             ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence            345788899999999  88999999999999999999997643  44567788887777777655542   246666655


Q ss_pred             ccCCH-------HHHHHHHHHhhcccchhhHHHHHHHHHcC--------------CCCHHHHHHHHcccccc
Q 048723           92 SYCCF-------EAFMVLAKSYLDIESHAFFAEINSLLAET--------------NMASADVAENLMPKSDE  142 (236)
Q Consensus        92 ~~p~~-------~~~~~i~~~~l~~~~~~~~~~i~~ll~~~--------------gls~a~i~~~l~~~~~~  142 (236)
                      ++.+.       .+..+.++.|-+........++..+++..              .+|+++-+..+++.+..
T Consensus       102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa  173 (534)
T COG4172         102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA  173 (534)
T ss_pred             cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc
Confidence            55443       44555667777766666666666666644              45888877777764433

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.97  E-value=1.2e-05  Score=74.34  Aligned_cols=29  Identities=28%  Similarity=0.578  Sum_probs=26.6

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +++++|+||||||||+++++||..++.+|
T Consensus        47 p~~ILLiGppG~GKT~lAraLA~~l~~~f   75 (441)
T TIGR00390        47 PKNILMIGPTGVGKTEIARRLAKLANAPF   75 (441)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            46799999999999999999999998874

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK06217 hypothetical protein; Validated

Probab=97.97  E-value=1.3e-05  Score=65.94  Aligned_cols=26  Identities=31%  Similarity=0.428  Sum_probs=24.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ++|+|+|||||||+++.|+..++.++
T Consensus         4 I~i~G~~GsGKSTla~~L~~~l~~~~   29 (183)
T PRK06217          4 IHITGASGSGTTTLGAALAERLDIPH   29 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCcE
Confidence            88999999999999999999998876

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.97  E-value=8.6e-06  Score=76.89  Aligned_cols=53  Identities=8%  Similarity=0.173  Sum_probs=41.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      .+++++++.+++|  +.|+||+|||||||+++|++.+.+.   .|-|.+....+...+
T Consensus       262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~  316 (491)
T PRK10982        262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHN  316 (491)
T ss_pred             cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCC
Confidence            3688889989888  8899999999999999999998766   566666554444333

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.96  E-value=1.4e-06  Score=72.57  Aligned_cols=66  Identities=21%  Similarity=0.292  Sum_probs=54.0

Q ss_pred             HHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee-cCccccchHHHh
Q 048723           13 LKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT-NYVDKLDPALIR   81 (236)
Q Consensus        13 v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt-N~~~~ld~al~r   81 (236)
                      +...++....+++++|.+..|  =+|+||||.||||++..|.+...+.   .+-+++.. .++..+|...+.
T Consensus        11 vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IA   79 (249)
T COG4674          11 VSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIA   79 (249)
T ss_pred             eEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHH
Confidence            334456677888999999999  5799999999999999999999888   67777766 778888877665

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.96  E-value=2.7e-05  Score=64.40  Aligned_cols=50  Identities=26%  Similarity=0.363  Sum_probs=40.3

Q ss_pred             hCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           26 IGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        26 ~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      +++.++.|  +.++||+|+|||||+..||++.-+.   .+.+.....+....+|+
T Consensus        18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~   69 (231)
T COG3840          18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPA   69 (231)
T ss_pred             EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcc
Confidence            34455555  8999999999999999999999888   67777777666777775

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.96  E-value=5e-06  Score=78.43  Aligned_cols=38  Identities=21%  Similarity=0.391  Sum_probs=33.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++...
T Consensus       272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~  311 (490)
T PRK10938        272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP  311 (490)
T ss_pred             CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            344788899999888  88999999999999999999754

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.95  E-value=8.4e-06  Score=65.48  Aligned_cols=29  Identities=38%  Similarity=0.430  Sum_probs=25.9

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+..++|+|||||||||+++.||..++.+
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~   31 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYD   31 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            44569999999999999999999999876

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.95  E-value=3.1e-05  Score=75.12  Aligned_cols=26  Identities=42%  Similarity=0.796  Sum_probs=25.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +||+||||-||||||+.||+..++.+
T Consensus       329 lLL~GppGlGKTTLAHViAkqaGYsV  354 (877)
T KOG1969|consen  329 LLLCGPPGLGKTTLAHVIAKQAGYSV  354 (877)
T ss_pred             EEeecCCCCChhHHHHHHHHhcCceE
Confidence            88999999999999999999999998

>PLN03232 ABC transporter C family member; Provisional

Probab=97.95  E-value=6.8e-06  Score=87.06  Aligned_cols=62  Identities=19%  Similarity=0.238  Sum_probs=54.0

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRM   85 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~   85 (236)
                      +.+++++++.+++|  +.++||+|+|||||+++|.+...+.   .|.|.+.+.++..++..-+|. ++
T Consensus      1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~-~i 1312 (1495)
T PLN03232       1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRR-VL 1312 (1495)
T ss_pred             CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHh-hc
Confidence            35788999988888  9999999999999999999999988   888898888999998877763 44

>TIGR00368 Mg chelatase-related protein

Probab=97.94  E-value=3e-05  Score=73.56  Aligned_cols=41  Identities=27%  Similarity=0.513  Sum_probs=30.2

Q ss_pred             HHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhh
Q 048723           14 KKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~   54 (236)
                      ...+......+.+.+....+  ++|+|||||||||++++|++.
T Consensus       192 ~dv~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~l  234 (499)
T TIGR00368       192 KDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGI  234 (499)
T ss_pred             HHhcCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcc
Confidence            33344455556666655555  999999999999999999864

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.94  E-value=5.5e-05  Score=69.70  Aligned_cols=130  Identities=15%  Similarity=0.100  Sum_probs=75.7

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------------   59 (236)
                      ..++|+||.|+|||.|++++++......                                                    
T Consensus       114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~  193 (408)
T COG0593         114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERT  193 (408)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChhH
Confidence            3499999999999999999999873222                                                    


Q ss_pred             -------------cCceEEEEeecCccc---cchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHHHHHHHH-
Q 048723           60 -------------VGEKGIVFTTNYVDK---LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLL-  122 (236)
Q Consensus        60 -------------~~~~~vi~ttN~~~~---ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll-  122 (236)
                                   .+..+++.+...|..   +.|.|..+-.....+.+..|+.+.+..+++............++..++ 
T Consensus       194 qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la  273 (408)
T COG0593         194 QEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLA  273 (408)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence                         223344444445554   447888732345677889999999999998865544444444333332 


Q ss_pred             HcCCCCHHHHHHHHc---ccccccChHHHHHHHHHHHHHHHH
Q 048723          123 AETNMASADVAENLM---PKSDEEDADSCLKNLIEALKVAKE  161 (236)
Q Consensus       123 ~~~gls~a~i~~~l~---~~~~~~~~~~~~~~~~~~L~~~~~  161 (236)
                      ....=+-.++...+.   ..+......++...+...|+....
T Consensus       274 ~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~  315 (408)
T COG0593         274 KRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR  315 (408)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence            222333333333332   233333334555555555554433

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.94  E-value=1.3e-05  Score=76.13  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=38.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT   68 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t   68 (236)
                      .++.+++|.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+.
T Consensus       298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~  344 (520)
T TIGR03269       298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVR  344 (520)
T ss_pred             eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEe
Confidence            4688899999988  8899999999999999999998766   5655553

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.94  E-value=1.6e-05  Score=70.58  Aligned_cols=56  Identities=21%  Similarity=0.409  Sum_probs=47.8

Q ss_pred             HhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +.+.++.++.|  +++.|-+|||||||+++|.+...+.   .+-+.+.+.++..++++-+|
T Consensus        44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr  101 (386)
T COG4175          44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELR  101 (386)
T ss_pred             eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHH
Confidence            34566788888  7789999999999999999999988   88889999899999876553

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.93  E-value=1.6e-05  Score=63.47  Aligned_cols=51  Identities=29%  Similarity=0.446  Sum_probs=40.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      ..+.++++.+.+|  ++|+||+|+|||||+++|++.+.+.   .+.+.+.......
T Consensus        13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~   65 (157)
T cd00267          13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAK   65 (157)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEccc
Confidence            4677788888877  8899999999999999999998776   6666665544433

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03130 ABC transporter C family member; Provisional

Probab=97.93  E-value=9.7e-06  Score=86.36  Aligned_cols=61  Identities=16%  Similarity=0.243  Sum_probs=54.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRM   85 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~   85 (236)
                      .+++++++.+++|  +.++||+|+|||||+++|.+...+.   .|.|.+.+.++..++..-+|. ++
T Consensus      1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~-~I 1315 (1622)
T PLN03130       1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRK-VL 1315 (1622)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHh-cc
Confidence            4788999998888  9999999999999999999999988   888898998999999877773 44

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.93  E-value=1.6e-05  Score=72.08  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=24.0

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++.++|+||||||||||+++|++.++.
T Consensus        78 r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            344899999999999999999999965

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.92  E-value=2.2e-05  Score=69.80  Aligned_cols=38  Identities=21%  Similarity=0.333  Sum_probs=33.4

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ...++.++++.+.+|  +.|+||+|+|||||+++|++.+.
T Consensus        57 ~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~   96 (305)
T PRK14264         57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND   96 (305)
T ss_pred             CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            345788888988888  88999999999999999999875

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=97.91  E-value=6.4e-06  Score=71.96  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=34.1

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ...++.++++.+.+|  ++|+||||+|||||+++|++.+.
T Consensus        36 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            445788999999988  88999999999999999999886

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=1.6e-05  Score=74.34  Aligned_cols=43  Identities=37%  Similarity=0.490  Sum_probs=36.8

Q ss_pred             HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHh
Q 048723           11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~   53 (236)
                      +.+..+++.+.++.+-++.+.+|  |-|+||+|+|||||+++|++
T Consensus        84 ~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   84 DNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             eeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            35566777888888877777777  99999999999999999998

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=97.90  E-value=1.3e-05  Score=75.33  Aligned_cols=67  Identities=21%  Similarity=0.227  Sum_probs=55.1

Q ss_pred             HHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           12 DLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        12 ~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+...|..-..+++++|.+.+|  ..|+|.||+|||||+|.|++...++   .+-+.+.+....-.+|.-.+
T Consensus        13 ~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~   81 (500)
T COG1129          13 GISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDAL   81 (500)
T ss_pred             cceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHH
Confidence            3455566667899999999999  8899999999999999999999988   78888887766666665544

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.89  E-value=7.7e-05  Score=61.69  Aligned_cols=48  Identities=23%  Similarity=0.290  Sum_probs=41.5

Q ss_pred             HHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           11 KDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        11 ~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +++...|...++++.+++..+.|  +.++|.+||||||+++||.-.-.+.
T Consensus        10 ~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~   59 (256)
T COG4598          10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS   59 (256)
T ss_pred             hHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC
Confidence            45666778889999999999999  7899999999999999998766665

>PRK13409 putative ATPase RIL; Provisional

Probab=97.89  E-value=7.3e-06  Score=79.26  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=34.6

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEE
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIV   66 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi   66 (236)
                      ..+.++. .+.+|  +.|+||||+|||||+++|++.+.++   .|-+.
T Consensus        88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~  131 (590)
T PRK13409         88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYE  131 (590)
T ss_pred             eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---Ccccc
Confidence            4677777 67777  7899999999999999999998877   45554

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.88  E-value=0.00018  Score=65.33  Aligned_cols=42  Identities=10%  Similarity=0.085  Sum_probs=33.0

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                      ..++|+.++.++.+.|.++.  |. ..+.++.++.++...++...
T Consensus       171 ~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~  212 (351)
T PRK09112        171 RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL  212 (351)
T ss_pred             CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence            56777778888898888877  55 57899999988888777763

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.88  E-value=5.8e-05  Score=67.94  Aligned_cols=42  Identities=14%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS  105 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~  105 (236)
                      ...++|++|+.+..+.|.++.  |- ..+.|..|+.+.....+..
T Consensus       139 ~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~  180 (329)
T PRK08058        139 GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE  180 (329)
T ss_pred             CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence            477888888889999999888  44 5689998888877655554

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.88  E-value=7.4e-06  Score=70.44  Aligned_cols=40  Identities=28%  Similarity=0.497  Sum_probs=34.9

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ....+++++++.+.+|  +.|+||+|+|||||+++|++.+.+
T Consensus        15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~   56 (252)
T PRK14272         15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDL   56 (252)
T ss_pred             CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            3445789999998888  789999999999999999998764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.88  E-value=6.8e-06  Score=80.12  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=39.8

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      +....+|.+++|.+.+|  +.|+||||||||||+++|++.+.++   .|.|.+
T Consensus        13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~   62 (635)
T PRK11147         13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIY   62 (635)
T ss_pred             eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEe
Confidence            44556899999999988  8899999999999999999988766   454443

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=97.87  E-value=0.00033  Score=69.98  Aligned_cols=45  Identities=18%  Similarity=0.198  Sum_probs=31.6

Q ss_pred             ceEEEEeecCc---cccchHHHhcCCcc-cEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYV---DKLDPALIRRGRMD-KRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~---~~ld~al~r~gR~d-~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .++||+.+|..   +.|+|.+..  |+. ..|.|+.++.+++..|+...+.
T Consensus       902 KLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe  950 (1164)
T PTZ00112        902 KLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLE  950 (1164)
T ss_pred             eEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHH
Confidence            46777888864   456677666  443 2467788899999989887654

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=97.87  E-value=0.00021  Score=65.37  Aligned_cols=43  Identities=9%  Similarity=0.097  Sum_probs=34.3

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ..++|++|+.++.+.|.++.  |. ..+.|+.++.+....++....
T Consensus       171 ~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~  213 (365)
T PRK07471        171 RSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG  213 (365)
T ss_pred             CeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence            67888899999999888766  54 678999998888877777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		6e-05
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		9e-05
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		1e-04
4b4t_I	437	Near-Atomic Resolution Structural Model Of The Yeas		4e-04

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 44  KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS 92
           + T++  +     +D +G+  I+  TN  D LDPAL+R GR+D+++E+ 
Sbjct: 302 QRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP 350

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 44  KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEA----F 99
           + TM+  +     +D  G   ++F TN  + LDPAL+R GR+D+++E S    E     F
Sbjct: 330 QRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIF 389
Query: 100 MVLAKS 105
            + +KS
Sbjct: 390 RIHSKS 395

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 25  KIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR 81
           +IG    RG LLYGPPGTGK+ ++ A+AN      +   G  F   Y+ +  P ++R
Sbjct: 200 QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGE-GPRMVR 255

>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 44  KSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI 89
           + TM+  +     +D  G+  ++  TN ++ LDPALIR GR+D++I
Sbjct: 303 QRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKI 348

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	8e-07
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	5e-06
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	6e-05
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	6e-04
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-05
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	2e-05
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	2e-05
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	6e-05
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	7e-05
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	7e-05
2qgz_A	308	Helicase loader, putative primosome component; str	9e-05
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	2e-04
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	2e-04
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	2e-04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	3e-04
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	5e-04
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	5e-04
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	5e-04
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	8e-04
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 4e-08
 Identities = 29/212 (13%), Positives = 65/212 (30%), Gaps = 48/212 (22%)

Query: 4   KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEK 63
           +   ++++ L +    K              L+ G  G+GK+ +   +    +Y +  + 
Sbjct: 135 QPYLKLRQALLELRPAK------------NVLIDGVLGSGKTWVALDVCL--SYKVQCKM 180

Query: 64  GI-VF--TTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINS 120
              +F       +  +  L    ++  +I+ ++           S + +  H+  AE+  
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS----SNIKLRIHSIQAELRR 236

Query: 121 LLAETNMASA-----DVAENLMPKSDEEDAD----SC--L-----KNLIEALKVAKEEAR 164
           LL      +      +V        + +  +    SC  L     K + + L  A     
Sbjct: 237 LLKSKPYENCLLVLLNV-------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 165 KNAEEEALLKAEEAK----KKAREEAKAEKEE 192
                   L  +E K    K      +    E
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 9   IKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLV 60
           +           ++  K G    R  +LYGPPG GK+T    +A  L YD++
Sbjct: 55  LANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 7  EEIKKDLKKFSEG----KEYCAKIGKAWKRGYLLYGPPGTGKSTMIA-AMAN 53
          E++K++L++  +      +   K G    +G L YGPPG GK T++A A+AN
Sbjct: 21 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK-TLLAKAIAN 71

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 7  EEIKKDLKKFSEG----KEYCAKIGKAWKRGYLLYGPPGTGKSTMIA-AMAN 53
          E+I+++L           +    +G     G LL GPPG GK T++A A+AN
Sbjct: 16 EDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGK-TLLAKAVAN 66

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 18/63 (28%)

Query: 7  EEIKKDLK-------KFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIA------AMAN 53
          +  K+ L+          E       +    K G LL+GPPG GK T++A        A 
Sbjct: 27 DVAKQALQEMVILPSVRPE---LFTGLRAPAK-GLLLFGPPGNGK-TLLARAVATECSAT 81

Query: 54 FLN 56
          FLN
Sbjct: 82 FLN 84

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 8  EIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGI-- 65
          +     +     + +         +G    G PG GK+ +  A        +  +KGI  
Sbjct: 15 KNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK----AIYEKKGIRG 70

Query: 66 VFTT--NYVDKLDPALIRRGRMDKRIE 90
           F    + + +L    +  G+  K ++
Sbjct: 71 YFFDTKDLIFRLKHL-MDEGKDTKFLK 96

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 18/63 (28%)

Query: 7   EEIKKDLK-------KFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIA------AMAN 53
           +  K+ L+          E       +    + G LL+GPPG GK TM+A      + A 
Sbjct: 121 DLAKQALQEIVILPSLRPE---LFTGLRAPAR-GLLLFGPPGNGK-TMLAKAVAAESNAT 175

Query: 54  FLN 56
           F N
Sbjct: 176 FFN 178

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 18/63 (28%)

Query: 7   EEIKKDLK-------KFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIA------AMAN 53
           E  K  +K          +       +    K G LL+GPPGTGK T+I       + A 
Sbjct: 90  EFAKATIKEIVVWPMLRPD---IFTGLRGPPK-GILLFGPPGTGK-TLIGKCIASQSGAT 144

Query: 54  FLN 56
           F +
Sbjct: 145 FFS 147

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 10  KKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL 55
              ++ FS   ++  +   A ++G  LYG  G GKS ++AAMA+ L
Sbjct: 131 ASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 65  IVFTTNYVDKLDPALIRRGRMDKRIE 90
           I+ T N    L   LIR GRM+K   
Sbjct: 158 IIVTGNDFSTLYAPLIRDGRMEKFYW 183

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 7/31 (22%)

Query: 32 RGYLLYGPPGTGKSTMIA------AMANFLN 56
           G LLYGPPGTGK + +A      A + F +
Sbjct: 52 SGILLYGPPGTGK-SYLAKAVATEANSTFFS 81

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 13/55 (23%)

Query: 7  EEIKKDLK-------KFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIA-AMAN 53
          E  K+ LK       KF             W+ G LL+GPPGTGK + +A A+A 
Sbjct: 18 EGAKEALKEAVILPIKFPH---LFTGKRTPWR-GILLFGPPGTGK-SYLAKAVAT 67

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 9/49 (18%)

Query: 7  EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL 55
          +E+ + LK + E K     +        L  GPPGTGK+    A+A  L
Sbjct: 23 DEVIQRLKGYVERKN-IPHL--------LFSGPPGTGKTATAIALARDL 62

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 15/23 (65%), Positives = 19/23 (82%), Gaps = 2/23 (8%)

Query: 32 RGYLLYGPPGTGKSTMIA-AMAN 53
          +G LLYGPPGTGK T++A A+A 
Sbjct: 52 KGILLYGPPGTGK-TLLAKAVAT 73

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 69  TNYVDKLDPALIRRGRMDKRIE 90
           TN  D LDPA++R GR D+ IE
Sbjct: 163 TNRPDILDPAILRPGRFDRIIE 184

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 15/22 (68%), Positives = 18/22 (81%)

Query: 32  RGYLLYGPPGTGKSTMIAAMAN 53
           RG LLYGPPGTGK+ +  A+AN
Sbjct: 239 RGILLYGPPGTGKTLIARAVAN 260

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 9/52 (17%)

Query: 4  KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL 55
          K     ++ + ++  GK+          +G  L+G  G GK+ ++AA+AN L
Sbjct: 36 KAIRFAERFVAEYEPGKKM---------KGLYLHGSFGVGKTYLLAAIANEL 78

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Length = 377

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 31  KRGYLLYGPPGTGKSTMIAAMANFLNY 57
           KR +L  GP  +GK+T+ AA+      
Sbjct: 169 KRYWLFKGPIDSGKTTLAAALLELCGG 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.96
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.96
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.96
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.96
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.96
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.96
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.89
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.89
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.89
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.82
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.81
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.8
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.79
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.79
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.78
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.78
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.77
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.76
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.76
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.75
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.74
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.74
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.73
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.71
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.67
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.67
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.65
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.64
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.62
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.61
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.39
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.24
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.23
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.12
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.09
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.07
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.05
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.03
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.01
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.01
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.99
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.98
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.96
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.96
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.95
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.94
3pvs_A	447	Replication-associated recombination protein A; ma	98.94
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.92
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.92
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	98.87
3bos_A	242	Putative DNA replication factor; P-loop containing	98.87
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.85
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	98.82
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.82
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.78
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.78
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.77
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.75
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.75
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.73
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.71
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.7
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.7
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.7
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.69
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.69
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.68
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.68
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.68
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.67
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	98.66
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.66
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.66
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.66
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	98.66
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.66
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.65
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.64
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.64
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.64
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.63
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.63
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.63
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.62
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.61
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.61
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	98.6
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.6
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.59
1g6h_A	257	High-affinity branched-chain amino acid transport	98.59
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.56
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.55
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.53
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.53
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.52
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.51
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.5
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.49
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.49
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.49
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.47
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.46
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.46
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.44
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.41
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.4
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.35
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.35
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.34
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.34
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.34
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.34
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.32
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.32
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.3
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.3
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.29
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.27
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.25
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.23
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.22
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.22
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.21
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.18
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.17
3co5_A	143	Putative two-component system transcriptional RES	98.16
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.15
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.13
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.1
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.09
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.06
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.05
2og2_A	359	Putative signal recognition particle receptor; nuc	98.04
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.03
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.0
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.94
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.93
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.93
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.91
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.9
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.89
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.89
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.88
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.87
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.87
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.87
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.86
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.86
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.84
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.84
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.83
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.83
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.83
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.82
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.81
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.8
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.79
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.78
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.77
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.77
1via_A	175	Shikimate kinase; structural genomics, transferase	97.76
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.75
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.74
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.73
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.73
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.72
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.72
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.7
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.7
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.7
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.69
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.69
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.68
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.67
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.67
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.66
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.65
2qgz_A	308	Helicase loader, putative primosome component; str	97.65
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.65
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.65
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.65
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.64
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.64
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.64
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.63
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.63
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.63
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.62
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.61
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.6
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.6
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.6
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.6
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.6
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.59
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.59
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.58
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.58
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.57
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.56
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.56
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.56
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.56
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.54
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.54
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.54
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.54
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.54
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.53
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.52
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.52
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.52
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.51
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.51
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.51
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.51
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.51
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.5
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.5
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.49
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.49
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.49
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.49
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.48
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.48
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.48
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.47
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.46
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.46
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.45
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.45
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.45
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.44
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.44
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.44
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.42
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.42
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.42
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.41
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.41
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.41
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.4
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.39
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.39
3kw6_A	78	26S protease regulatory subunit 8; structural geno	97.39
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.37
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.37
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.36
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.36
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.34
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.32
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.32
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.31
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.31
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.3
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.29
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.29
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.29
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.28
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.28
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.28
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.27
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.27
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.27
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.27
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.23
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.22
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.22
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.21
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.21
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.21
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.2
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.2
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.19
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.19
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.19
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.18
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.18
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.15
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.15
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.13
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.12
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	97.11
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.09
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.08
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.08
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.08
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.08
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.08
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.06
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.06
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.05
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.05
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.04
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.01
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.01
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.0
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.0
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.0
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.99
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.97
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.96
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.93
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.92
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.9
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.89
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.88
2krk_A	86	26S protease regulatory subunit 8; structural geno	96.87
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.87
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.86
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.86
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.83
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.82
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	96.81
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.79
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.79
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.79
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.78
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.78
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.76
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.75
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.75
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.75
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.74
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.71
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.7
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.7
3ice_A	422	Transcription termination factor RHO; transcriptio	96.7
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.69
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.69
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.67
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.66
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.65
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.65
3io5_A	333	Recombination and repair protein; storage dimer, i	96.65
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.64
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.63
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.61
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.59
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.58
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.58
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.57
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.54
3f8t_A	506	Predicted ATPase involved in replication control,	96.54
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.54
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.51
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.51
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.5
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.5
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.5
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.46
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	96.46
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.42
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.41
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.4
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.39
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.39
2fna_A	357	Conserved hypothetical protein; structural genomic	96.37
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.35
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.34
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.29
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.28
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.28
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.28
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.27
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.27
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.27
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.26
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.25
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.24
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.23
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.22
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.19
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.17
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.16
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.15
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	96.15
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.15
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.14
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.14
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.13
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.13
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.13
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.12
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.11
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.11
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.11
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	96.08
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.08
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.07
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.06
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.05
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.04
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.03
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.02
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.02
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.02
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.01
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.99
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.99
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.98
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	95.98
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.98
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.97
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.97
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.96
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.95
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.93
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.93
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.93
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.92
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.92
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.91
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.87
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.86
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.86
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.85
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.85
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.84
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.84
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.83
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.83
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	95.82
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.82
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.81
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.79
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.77
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.77
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.77
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.75
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.75
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.75
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.73
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.73
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.73
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.73
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.72
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.71
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.71
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.7
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.7
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.69
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.69
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.68
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.67
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.65
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.64
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.63
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.61
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.61
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.6
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.6
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.6
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.6
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	95.58
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.58
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.58
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.56
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.55
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.55
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.54
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.53
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.51
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.51
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.51
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.5
2xxa_A	433	Signal recognition particle protein; protein trans	95.5
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.5
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.49
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.49
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.49
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.49
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.49
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.48
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.48
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.47
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.46
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	95.46
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.44
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	95.44
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.41
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.39
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.39
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.38
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.37
3l0o_A	427	Transcription termination factor RHO; helicase, RH	95.35
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.32
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.32
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.32
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.31
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.31
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.29

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-29  Score=230.81  Aligned_cols=136  Identities=29%  Similarity=0.385  Sum_probs=120.3

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++|++|.+.+..++.++++|..+|+.+++|+|||||||||||+++++||++++.+|                       
T Consensus       154 ~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~l  233 (405)
T 4b4t_J          154 TKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVREL  233 (405)
T ss_dssp             HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999998                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ...++||+|||+++.||||++||||||+.
T Consensus       234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~  313 (405)
T 4b4t_J          234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRK  313 (405)
T ss_dssp             HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCE
T ss_pred             HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceE
Confidence                                                               23689999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      |++++|+.+.|..||+.|+.........++..++. +.|||++||..+|..
T Consensus       314 I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~e  364 (405)
T 4b4t_J          314 IEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTE  364 (405)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             EEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHH
Confidence            99999999999999999987544332223555555 779999999877764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-29  Score=230.84  Aligned_cols=136  Identities=25%  Similarity=0.380  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++|++|.+.+..++.++++|..+|+.+++|+|||||||||||+++++||++++.+|                       
T Consensus       188 d~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~l  267 (437)
T 4b4t_I          188 ESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQI  267 (437)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999988                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .++++||+|||+++.||||++|+||||+.
T Consensus       268 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~  347 (437)
T 4b4t_I          268 FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRK  347 (437)
T ss_dssp             HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEE
T ss_pred             HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEE
Confidence                                                               23689999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      |+|++|+.++|..||+.|+.........++..++. +.|||++||..+|..
T Consensus       348 I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~e  398 (437)
T 4b4t_I          348 ILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTE  398 (437)
T ss_dssp             ECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             EEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence            99999999999999999987543332223455555 779999999877663

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3e-29  Score=230.82  Aligned_cols=156  Identities=24%  Similarity=0.389  Sum_probs=128.0

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++|++|.+.+..++.++++|..+|+.+++|+|||||||||||+++++||+.++.+|                       
T Consensus       187 ~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~  266 (437)
T 4b4t_L          187 TEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREM  266 (437)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999998                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .+.++||+|||+++.||||++||||||+.
T Consensus       267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~  346 (437)
T 4b4t_L          267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRK  346 (437)
T ss_dssp             HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEE
T ss_pred             HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCcccee
Confidence                                                               23689999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc----cccChHHHHHHHHHHHHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS----DEEDADSCLKNLIEALKV  158 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~----~~~~~~~~~~~~~~~L~~  158 (236)
                      |+|++|+.+.|..||+.|+.........++..++. +.|||++||..+|..++    ......++.+++..++++
T Consensus       347 I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~  421 (437)
T 4b4t_L          347 VEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK  421 (437)
T ss_dssp             ECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             eecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            99999999999999999986543322223555555 78999999988776411    111223455555555544

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.3e-29  Score=228.23  Aligned_cols=136  Identities=27%  Similarity=0.339  Sum_probs=119.2

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++|++|.+.+..++.+++.|..+|+.+++|+|||||||||||+++++||++++.+|                       
T Consensus       215 ~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~l  294 (467)
T 4b4t_H          215 KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL  294 (467)
T ss_dssp             HHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999988                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .+.++||+|||+++.||||++|+||||+.
T Consensus       295 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~  374 (467)
T 4b4t_H          295 FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRK  374 (467)
T ss_dssp             HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEE
T ss_pred             HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEE
Confidence                                                               23689999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      |+|++|+.++|..||+.|+.........++..++. +.|||++||..+|..
T Consensus       375 I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~e  425 (467)
T 4b4t_H          375 VEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTE  425 (467)
T ss_dssp             ECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             EEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
Confidence            99999999999999999987543332223445555 679999999877653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.6e-29  Score=229.42  Aligned_cols=135  Identities=25%  Similarity=0.323  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++|++|.+.+..++.+++.|..+|+++++|+|||||||||||+++++||++++.+|                       
T Consensus       187 ~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~l  266 (434)
T 4b4t_M          187 DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDA  266 (434)
T ss_dssp             HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999988                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .++++||+|||+++.||||++|+||||+.
T Consensus       267 F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~  346 (434)
T 4b4t_M          267 FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRK  346 (434)
T ss_dssp             HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEE
T ss_pred             HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEE
Confidence                                                               23679999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      |+|++|+.++|..||+.|+.........++..++. +.|||++||..+|.
T Consensus       347 I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~  396 (434)
T 4b4t_M          347 IEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTV  396 (434)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred             EEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence            99999999999999999986443322223455555 67999999987665

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-28  Score=225.98  Aligned_cols=135  Identities=30%  Similarity=0.441  Sum_probs=118.0

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++|++|.+.+..++.++++|..+|+.+++|+|||||||||||+++++||+.++.+|                       
T Consensus       178 ~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~l  257 (428)
T 4b4t_K          178 DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDV  257 (428)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999988                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ..+++||+|||+++.||||++||||||+.
T Consensus       258 F~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~  337 (428)
T 4b4t_K          258 FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRK  337 (428)
T ss_dssp             HHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEE
T ss_pred             HHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEE
Confidence                                                               23689999999999999999999999999


Q ss_pred             Eecc-cCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           89 IEMS-YCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        89 i~~~-~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      |+|+ +|+...|..|++.|+.........++..++. +.|||++||..+|.
T Consensus       338 I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~  388 (428)
T 4b4t_K          338 IEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ  388 (428)
T ss_dssp             EECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence            9996 8999999999999986543322223455555 77999999986665

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.89  E-value=2.6e-24  Score=210.42  Aligned_cols=146  Identities=25%  Similarity=0.312  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.|+++.+.+..++..++.|.++++.+++|+|||||||||||+++++||++++.+|                       
T Consensus       483 ~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~l  562 (806)
T 3cf2_A          483 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI  562 (806)
T ss_dssp             HHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHH
Confidence            467888988888888999999999999999999999999999999999999999988                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ..+++||++||+++.||+|++|+||||++
T Consensus       563 F~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~  642 (806)
T 3cf2_A          563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL  642 (806)
T ss_dssp             HHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCE
T ss_pred             HHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEE
Confidence                                                               22679999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAK  160 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~  160 (236)
                      |++++|+.+.|..||+.|+.........++..++. +.|||++||..+|.            ++.+.++++..
T Consensus       643 i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~------------~A~~~a~r~~~  703 (806)
T 3cf2_A          643 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ------------RACKLAIRESI  703 (806)
T ss_dssp             EEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH------------HHHHHHHHHHH
T ss_pred             EEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH------------HHHHHHHHHHH
Confidence            99999999999999999987654433334555555 56888888876555            55566666544

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.89  E-value=5.5e-23  Score=178.57  Aligned_cols=136  Identities=22%  Similarity=0.271  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.|++|.+.+..++..+..|.++++.+++|++|+||||||||||+++||+.++..+                       
T Consensus        16 ~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~v   95 (274)
T 2x8a_A           16 EDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV   95 (274)
T ss_dssp             HHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHH
Confidence            467888888888999999999999999999999999999999999999999987654                       


Q ss_pred             ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723           60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM   91 (236)
Q Consensus        60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~   91 (236)
                                                                      ...++++++||+++.||++++|+||||+.|++
T Consensus        96 f~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~  175 (274)
T 2x8a_A           96 FQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFV  175 (274)
T ss_dssp             HHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEEC
T ss_pred             HHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEe
Confidence                                                            11468899999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhccc---chhhHHHHHHHHH---cCCCCHHHHHHHHcc
Q 048723           92 SYCCFEAFMVLAKSYLDIE---SHAFFAEINSLLA---ETNMASADVAENLMP  138 (236)
Q Consensus        92 ~~p~~~~~~~i~~~~l~~~---~~~~~~~i~~ll~---~~gls~a~i~~~l~~  138 (236)
                      ++|+.+.|..|++.++...   ......++..++.   +.|||++||...|..
T Consensus       176 ~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~  228 (274)
T 2x8a_A          176 GLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVRE  228 (274)
T ss_dssp             CSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHH
Confidence            9999999999999987431   1111223444554   349999999877663

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.89  E-value=5.1e-23  Score=201.26  Aligned_cols=146  Identities=24%  Similarity=0.278  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      +.+++|.+.+..++.++++|..+++.+++|+|||||||||||+|+++||++++.++                        
T Consensus       211 ~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF  290 (806)
T 3cf2_A          211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF  290 (806)
T ss_dssp             TTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHH
Confidence            56888999888889999999999999999999999999999999999999999888                        


Q ss_pred             -----------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecc
Q 048723           60 -----------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS   92 (236)
Q Consensus        60 -----------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~   92 (236)
                                                                     .+.++||++||+++.||++++|+||||+.|+++
T Consensus       291 ~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~  370 (806)
T 3cf2_A          291 EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG  370 (806)
T ss_dssp             HHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECC
T ss_pred             HHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecC
Confidence                                                           236899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHH
Q 048723           93 YCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKE  161 (236)
Q Consensus        93 ~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~  161 (236)
                      .|+...|..|++.|+.........++..++. +.||+++||..+|.            ++.+.++++...
T Consensus       371 ~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~------------eA~~~A~~r~~~  428 (806)
T 3cf2_A          371 IPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS------------EAALQAIRKKMD  428 (806)
T ss_dssp             CCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH------------HHHHHHHHhccc
Confidence            9999999999999987544333334555555 78999999876655            445556665543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.82  E-value=7.4e-20  Score=160.33  Aligned_cols=135  Identities=27%  Similarity=0.334  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++.+.+.+...+..++.|..+++.++++++|+||||||||+++++|++.++.++                       
T Consensus        21 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~  100 (301)
T 3cf0_A           21 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI  100 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHH
Confidence            467888999888888999999999999999999999999999999999999988766                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ..+++||++||+++.+|++++|+|||+..
T Consensus       101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~  180 (301)
T 3cf0_A          101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL  180 (301)
T ss_dssp             HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred             HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceE
Confidence                                                               11578999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      |+++.|+.+.|..|++.++..........+..++. +.|++++||.+.|.
T Consensus       181 i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~  230 (301)
T 3cf0_A          181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ  230 (301)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred             EecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999999886433221112233333 67899998877665

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.81  E-value=1.7e-19  Score=155.59  Aligned_cols=158  Identities=25%  Similarity=0.301  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.+++|.+.+..++..+..+..+++..+++++|+||||||||+++++|++.++.++                       
T Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  102 (285)
T 3h4m_A           23 EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDI  102 (285)
T ss_dssp             HHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHH
Confidence            467888888888888899999999999999999999999999999999999998776                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         .+.++||+|||.++.+|++++|++||+..
T Consensus       103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~  182 (285)
T 3h4m_A          103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRI  182 (285)
T ss_dssp             HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEE
T ss_pred             HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeE
Confidence                                                               12578999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHccc---c-cccChHHHHHHHHHHHHHHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPK---S-DEEDADSCLKNLIEALKVAK  160 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~---~-~~~~~~~~~~~~~~~L~~~~  160 (236)
                      +.++.|+.+++..|++.++..........+..++. ..|++++++..++..+   + ......++.+++..++.+..
T Consensus       183 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~  259 (285)
T 3h4m_A          183 IEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM  259 (285)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence            99999999999999999876433322222344444 6799999988766541   1 11222355555555555543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.80  E-value=2.4e-19  Score=166.76  Aligned_cols=156  Identities=26%  Similarity=0.312  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++++.+.+ .++..+..|.++++.+++|++|+||||||||+++++|++.++.+|                       
T Consensus        22 ~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~l  100 (476)
T 2ce7_A           22 EEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDL  100 (476)
T ss_dssp             HHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHH
Confidence            45677777654 567788899999999999999999999999999999999998776                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ...++||++||+++.+|++++|+||||+.
T Consensus       101 f~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~  180 (476)
T 2ce7_A          101 FAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKK  180 (476)
T ss_dssp             HHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred             HHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeE
Confidence                                                               02478999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc---c-ccChHHHHHHHHHHHHHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS---D-EEDADSCLKNLIEALKVA  159 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~---~-~~~~~~~~~~~~~~L~~~  159 (236)
                      |.++.|+.+.|..|++.|+..........+..++. +.|++++||.+.|....   . .....++.+++..++.+.
T Consensus       181 i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v  256 (476)
T 2ce7_A          181 IVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV  256 (476)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             eecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence            99999999999999999876433221112333444 77999999988776521   1 112345556666666554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.79  E-value=6e-19  Score=150.37  Aligned_cols=135  Identities=24%  Similarity=0.319  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++++.+.+ .++..+..+..++..++++++|+|||||||||++++|++.++.++                       
T Consensus        18 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   96 (257)
T 1lv7_A           18 DEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM   96 (257)
T ss_dssp             HHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHH
Confidence            45677776644 456778888999999999999999999999999999999987655                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ...+++|++||+++.+|++++|++||++.
T Consensus        97 ~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~  176 (257)
T 1lv7_A           97 FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQ  176 (257)
T ss_dssp             HHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEE
T ss_pred             HHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeE
Confidence                                                               01368999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      ++++.|+.++|..|++.++..........+..++. ..|++++|+.+.+..
T Consensus       177 i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~  227 (257)
T 1lv7_A          177 VVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE  227 (257)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             EEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999999999998875432211111223333 678999999877664

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.79  E-value=2.8e-18  Score=151.89  Aligned_cols=132  Identities=27%  Similarity=0.232  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhc-CCcc----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL-NYDL----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l-~~~~----------------------   59 (236)
                      ++.|+.|.+.+..++..+.+|.. +..+++++||+||||||||+++++||+.+ +.++                      
T Consensus        18 ~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~   96 (322)
T 1xwi_A           18 EGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN   96 (322)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHH
Confidence            46788899988888888888874 35667899999999999999999999998 5554                      


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        ...++||++||+++.+|++++|  ||+..+
T Consensus        97 lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i  174 (322)
T 1xwi_A           97 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRI  174 (322)
T ss_dssp             HHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEE
T ss_pred             HHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEE
Confidence                                                              1247899999999999999999  999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      +++.|+.+.+..|++.++...... ....+..++. +.|+|++||..+|.
T Consensus       175 ~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~  224 (322)
T 1xwi_A          175 YIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR  224 (322)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             EeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999999988654332 2344556665 67999999876555

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.78  E-value=3.5e-18  Score=150.86  Aligned_cols=132  Identities=24%  Similarity=0.239  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++.|.+.+..++..+..+.. +..+++++||+||||||||+++++||+.++.++                       
T Consensus        24 ~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~  102 (322)
T 3eie_A           24 EGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQL  102 (322)
T ss_dssp             HHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHH
Confidence            46788888888888888877776 456678899999999999999999999998876                       


Q ss_pred             -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723           60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE   90 (236)
Q Consensus        60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~   90 (236)
                                                                       ...++||++||+++.||++++|  ||+..++
T Consensus       103 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~  180 (322)
T 3eie_A          103 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIY  180 (322)
T ss_dssp             HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEE
T ss_pred             HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEE
Confidence                                                             1257899999999999999999  9999999


Q ss_pred             cccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           91 MSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        91 ~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      ++.|+.+.|..|++.++...... ....+..++. +.|+++++|..+|.
T Consensus       181 ~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~  229 (322)
T 3eie_A          181 IPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK  229 (322)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999998754432 2334555655 67899999875554

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.78  E-value=1.4e-18  Score=147.57  Aligned_cols=135  Identities=23%  Similarity=0.306  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++.+.+.+ .++..+..|..++...+++++|+||||||||+++++|++.++.++                       
T Consensus        12 ~~~~~~l~~~~-~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (262)
T 2qz4_A           12 HEAKLEVREFV-DYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSL   90 (262)
T ss_dssp             HHHHHHHHHHH-HHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHH
Confidence            45677776654 456777888889999999999999999999999999999987665                       


Q ss_pred             ----------------------------------------------------cCceEEEEeecCccccchHHHhcCCccc
Q 048723           60 ----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDK   87 (236)
Q Consensus        60 ----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~   87 (236)
                                                                          ...+++|++||.++.+|++++|+|||+.
T Consensus        91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~  170 (262)
T 2qz4_A           91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDR  170 (262)
T ss_dssp             HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCE
T ss_pred             HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCe
Confidence                                                                0146899999999999999999999999


Q ss_pred             EEecccCCHHHHHHHHHHhhcccchhhHH--HHHHHHH-cCCCCHHHHHHHHcc
Q 048723           88 RIEMSYCCFEAFMVLAKSYLDIESHAFFA--EINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        88 ~i~~~~p~~~~~~~i~~~~l~~~~~~~~~--~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      .++++.|+.+++..|++.++.........  .+..++. ..|+++++|...+..
T Consensus       171 ~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~  224 (262)
T 2qz4_A          171 HVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNE  224 (262)
T ss_dssp             EEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             EEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHH
Confidence            99999999999999999887643222211  1234444 578999988877664

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.77  E-value=2.6e-18  Score=146.13  Aligned_cols=135  Identities=26%  Similarity=0.337  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.+.++.+ +..++..+..+.++++.+++|++|+|||||||||++++|++.++..+                       
T Consensus        22 ~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~  100 (254)
T 1ixz_A           22 EEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL  100 (254)
T ss_dssp             HHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence            356666665 44556778899999999999999999999999999999999876554                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ...+++++++|+++.+|++++|++||++.
T Consensus       101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~  180 (254)
T 1ixz_A          101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ  180 (254)
T ss_dssp             HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred             HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeE
Confidence                                                               01257889999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      ++++.|+.++|..|++.+...........+..++. ..|++++|+.+.+..
T Consensus       181 i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~  231 (254)
T 1ixz_A          181 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNE  231 (254)
T ss_dssp             EECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             EeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999999999998865332221122334444 679999998877764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.76  E-value=1.5e-18  Score=162.28  Aligned_cols=156  Identities=25%  Similarity=0.300  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.+.++.+. ..++..+..|.++++.+++|++|+||||||||||+++|++.++.++                       
T Consensus        37 ~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~l  115 (499)
T 2dhr_A           37 EEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL  115 (499)
T ss_dssp             HHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHH
Confidence            4567777664 4567788899999999999999999999999999999999987665                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ...++++++||+++.||++++|+||||+.
T Consensus       116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~  195 (499)
T 2dhr_A          116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ  195 (499)
T ss_dssp             TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCE
T ss_pred             HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceE
Confidence                                                               01358899999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcccc---cc-cChHHHHHHHHHHHHHH
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPKS---DE-EDADSCLKNLIEALKVA  159 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~~---~~-~~~~~~~~~~~~~L~~~  159 (236)
                      |.++.|+...|..|++.|+..........+..++. +.|++++||.+.+...+   .. ....++.+++..++.+.
T Consensus       196 i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v  271 (499)
T 2dhr_A          196 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV  271 (499)
T ss_dssp             EECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence            99999999999999998875432221122333444 67999999988877521   11 12345556666666543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.76  E-value=1.5e-17  Score=149.18  Aligned_cols=132  Identities=24%  Similarity=0.242  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++.|.+.+..++..+..|.. +..+++++||+||||||||+++++||+.++.++                       
T Consensus        57 ~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~  135 (355)
T 2qp9_X           57 EGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQL  135 (355)
T ss_dssp             GGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHH
Confidence            35677888887777777877776 566778899999999999999999999998776                       


Q ss_pred             -------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEe
Q 048723           60 -------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIE   90 (236)
Q Consensus        60 -------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~   90 (236)
                                                                       ...++||++||+++.||++++|  ||+..++
T Consensus       136 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~  213 (355)
T 2qp9_X          136 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIY  213 (355)
T ss_dssp             HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEE
T ss_pred             HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEE
Confidence                                                             1257899999999999999999  9999999


Q ss_pred             cccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           91 MSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        91 ~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      ++.|+.+.|..|++.++...... ....+..++. +.|+++++|..+|.
T Consensus       214 i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~  262 (355)
T 2qp9_X          214 IPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK  262 (355)
T ss_dssp             CCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             eCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999998754332 2234555555 67899999876555

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.75  E-value=1.3e-17  Score=143.91  Aligned_cols=135  Identities=26%  Similarity=0.337  Sum_probs=106.4

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.+.++.+ +..++..+..+.++++.+++|++|+||||||||||+++|++.+...+                       
T Consensus        46 ~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~  124 (278)
T 1iy2_A           46 EEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL  124 (278)
T ss_dssp             HHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHH
Confidence            456666655 44556778899999999999999999999999999999999876544                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ....++++++|+++.+|++++|++||++.
T Consensus       125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~  204 (278)
T 1iy2_A          125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ  204 (278)
T ss_dssp             HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCE
T ss_pred             HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeE
Confidence                                                               00258889999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      ++++.|+.++|..|++.++..........+..++. ..|++++||.+.+..
T Consensus       205 i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~  255 (278)
T 1iy2_A          205 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNE  255 (278)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             EEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999999999998865332221112333444 679999988876664

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.74  E-value=1.2e-17  Score=155.82  Aligned_cols=135  Identities=25%  Similarity=0.272  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +..+++|.+.+...+..+.+|..++...++++||+||||||||+++++|++.++.+|                       
T Consensus       210 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~  289 (489)
T 3hu3_A          210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA  289 (489)
T ss_dssp             HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHH
Confidence            456788888888888899999999999999999999999999999999999998776                       


Q ss_pred             ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723           60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM   91 (236)
Q Consensus        60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~   91 (236)
                                                                      ...++||++||+++.||++++|+|||+..|++
T Consensus       290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i  369 (489)
T 3hu3_A          290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI  369 (489)
T ss_dssp             HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEEC
T ss_pred             HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEe
Confidence                                                            22679999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      +.|+.++|..|++.++..........+..++. ..|++++++..++.
T Consensus       370 ~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~  416 (489)
T 3hu3_A          370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS  416 (489)
T ss_dssp             CCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence            99999999999999876443332223444444 67999998876655

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.74  E-value=3.4e-17  Score=150.95  Aligned_cols=132  Identities=26%  Similarity=0.233  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhc-CCcc----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL-NYDL----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l-~~~~----------------------   59 (236)
                      ++.++.+.+.+..++..+.+|.. +..+++++||+||||||||+++++||+.+ +.+|                      
T Consensus       140 ~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~  218 (444)
T 2zan_A          140 EGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN  218 (444)
T ss_dssp             HHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHH
Confidence            45677888877777777777664 24566889999999999999999999998 5554                      


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        ...++||++||+++.+|++++|  ||+..+
T Consensus       219 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i  296 (444)
T 2zan_A          219 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRI  296 (444)
T ss_dssp             HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEE
T ss_pred             HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEE
Confidence                                                              1257899999999999999999  999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchh-hHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHA-FFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~-~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      +++.|+.+.+..|++.++...... ....+..++. +.|+|+++|..+|.
T Consensus       297 ~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~  346 (444)
T 2zan_A          297 YIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR  346 (444)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             EeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999999998654332 2234555555 67999999876655

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.73  E-value=2.3e-18  Score=162.61  Aligned_cols=187  Identities=17%  Similarity=0.175  Sum_probs=121.7

Q ss_pred             HHhhhCCCCC-cceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------
Q 048723           22 YCAKIGKAWK-RGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------------------------   59 (236)
Q Consensus        22 ~~~~~~~~~~-rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------------------------   59 (236)
                      .+..+++..+ ..++|+|||||||||++++|++.++.++                                         
T Consensus        98 ~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~  177 (543)
T 3m6a_A           98 AVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP  177 (543)
T ss_dssp             HHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE
T ss_pred             HHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC
Confidence            4455555553 2389999999999999999999987665                                         


Q ss_pred             --------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCC
Q 048723           60 --------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCC   95 (236)
Q Consensus        60 --------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~   95 (236)
                                                                  .+.++||+|||+++.+|+++++  ||+ +|.|+.|+
T Consensus       178 vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~  254 (543)
T 3m6a_A          178 VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYT  254 (543)
T ss_dssp             EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCC
T ss_pred             EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCC
Confidence                                                        0346899999999999999999  884 78999999


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHHHHcC-------CCCHHHHHHHHcccccccChHHHHHHHHHHHHHHHHHHhhhHH
Q 048723           96 FEAFMVLAKSYLDIESHAFFAEINSLLAET-------NMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAE  168 (236)
Q Consensus        96 ~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~-------gls~a~i~~~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  168 (236)
                      .+.+..|++.|+          +.+.+...       .++...+...+..+...        ..++.|++..+...+++.
T Consensus       255 ~~e~~~Il~~~l----------~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~--------~~vR~L~~~i~~~~~~aa  316 (543)
T 3m6a_A          255 EIEKLEIVKDHL----------LPKQIKEHGLKKSNLQLRDQAILDIIRYYTRE--------AGVRSLERQLAAICRKAA  316 (543)
T ss_dssp             HHHHHHHHHHTH----------HHHHHHHTTCCGGGCEECHHHHHHHHHHHCCC--------SSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----------HHHHHHHcCCCcccccCCHHHHHHHHHhCChh--------hchhHHHHHHHHHHHHHH
Confidence            999999999887          22222322       33455443333322211        123334444444444443


Q ss_pred             HHHhHHHHHHhHHhHHHHhhhhhHhHhhhhccCCCCCCCcccccCccc---cccCCCceEEEEecCCCCCC
Q 048723          169 EEALLKAEEAKKKAREEAKAEKEEDKHAKQNVKDDGTSDIGVKQNGFV---NKAGGGGEYLILNANGEMGN  236 (236)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  236 (236)
                      ......+........+..+       ...+......+........|+|   ||+|+||.++.||+..+||+
T Consensus       317 ~~~~~~~~~~~~It~~~l~-------~~Lg~~~~~~e~~~~~~~~g~v~g~a~~~~~g~~~~ve~~~~~g~  380 (543)
T 3m6a_A          317 KAIVAEERKRITVTEKNLQ-------DFIGKRIFRYGQAETEDQVGVVTGLAYTTVGGDTLSIEVSLSPGK  380 (543)
T ss_dssp             HHHHTTCCSCCEECTTTTH-------HHHCSCCSCCSTTTCCCBSSEEEEEEEETTEEEEEEEEEEEESSC
T ss_pred             HHHHhcCCcceecCHHHHH-------HHhCCcccCchhhhccccccccccccccCCCccceeeEEEeeCCC
Confidence            3321111111112222223       5666666666665666777865   99999999999999999985

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.71  E-value=6.8e-18  Score=144.38  Aligned_cols=135  Identities=27%  Similarity=0.360  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++.+.+.+ .++..+..|.+++..++++++|+||||||||+++++|++.++.++                       
T Consensus        17 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   95 (268)
T 2r62_A           17 EEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDL   95 (268)
T ss_dssp             TTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTT
T ss_pred             HHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHH
Confidence            34566676644 456788899999999999999999999999999999999887655                       


Q ss_pred             -----------------------------------------------------cCceEEEEeecCccccchHHHhcCCcc
Q 048723           60 -----------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMD   86 (236)
Q Consensus        60 -----------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d   86 (236)
                                                                           ...+++|++||.++.+|++++|+|||+
T Consensus        96 ~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~  175 (268)
T 2r62_A           96 FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFD  175 (268)
T ss_dssp             HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSC
T ss_pred             HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCC
Confidence                                                                 012689999999999999999999999


Q ss_pred             cEEecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           87 KRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        87 ~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      ..++++.|+.+++..+++.++..........+..++. ..|++++++.+.+..
T Consensus       176 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~  228 (268)
T 2r62_A          176 RQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINE  228 (268)
T ss_dssp             CCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred             eEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999999999999998875432211111222333 568999888877664

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.67  E-value=7.9e-16  Score=133.34  Aligned_cols=132  Identities=22%  Similarity=0.267  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++.+.+.+......+.++..++ .++++++|+||||||||+++++|++.++.++                       
T Consensus        27 ~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~  105 (297)
T 3b9p_A           27 DVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRAL  105 (297)
T ss_dssp             HHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHH
Confidence            4567777777777666777776654 3467899999999999999999999988665                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ...++||++||+++.+|++++|  ||+..
T Consensus       106 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~  183 (297)
T 3b9p_A          106 FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKR  183 (297)
T ss_dssp             HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEE
T ss_pred             HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeE
Confidence                                                               0247899999999999999999  99999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhh-HHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAF-FAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~-~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      ++++.|+.+.+..+++.++......+ ...+..++. +.|++++++...+.
T Consensus       184 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~  234 (297)
T 3b9p_A          184 VYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK  234 (297)
T ss_dssp             EECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             EEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999998876433221 223444444 67999998876655

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.65  E-value=1e-15  Score=138.41  Aligned_cols=132  Identities=26%  Similarity=0.288  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +..++.|.+.+......+.++..++ .+.+++||+||||||||+++++||..++.+|                       
T Consensus       121 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~  199 (389)
T 3vfd_A          121 DLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRAL  199 (389)
T ss_dssp             HHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHH
Confidence            4567777777777777777777665 3467899999999999999999999998776                       


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        ...++||++||+++.+|++++|  ||+..+
T Consensus       200 ~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i  277 (389)
T 3vfd_A          200 FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRV  277 (389)
T ss_dssp             HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEE
T ss_pred             HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEE
Confidence                                                              1247899999999999999999  999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchhh-HHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHAF-FAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~~-~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      +++.|+.+.+..|++.++......+ ...+..++. ..|++++++..++.
T Consensus       278 ~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~  327 (389)
T 3vfd_A          278 YVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK  327 (389)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             EcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999999999998876433222 223445554 67999998876655

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.64  E-value=2e-15  Score=135.25  Aligned_cols=133  Identities=22%  Similarity=0.221  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.++.|.+.+..++..+..+...+ ..++++||+||||||||+++++||+.++.++                       
T Consensus        90 ~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~  168 (357)
T 3d8b_A           90 EFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRAL  168 (357)
T ss_dssp             HHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHH
Confidence            3566777777766666666665554 5577899999999999999999999998776                       


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        ...++||++||.++.+|++++|  ||+..+
T Consensus       169 ~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i  246 (357)
T 3d8b_A          169 FAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRL  246 (357)
T ss_dssp             HHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEE
T ss_pred             HHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEE
Confidence                                                              1257899999999999999999  999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchhh-HHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHAF-FAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~~-~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      +++.|+.+.+..++..++......+ ...+..++. ..|++++++..+|..
T Consensus       247 ~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~  297 (357)
T 3d8b_A          247 YIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE  297 (357)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             EeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999999999998875432221 233444554 679999998866653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.62  E-value=1.1e-15  Score=133.59  Aligned_cols=83  Identities=20%  Similarity=0.117  Sum_probs=70.9

Q ss_pred             hhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------
Q 048723           25 KIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------   59 (236)
Q Consensus        25 ~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------   59 (236)
                      ..+..+++++||+||||||||+++++||+.++.++                                             
T Consensus        30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD  109 (293)
T 3t15_A           30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD  109 (293)
T ss_dssp             CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence            34677788999999999999999999999998877                                             


Q ss_pred             -------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCH
Q 048723           60 -------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCF   96 (236)
Q Consensus        60 -------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~   96 (236)
                                                                 .++++||+|||+++.+|++++|+||||..|+  .|+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~  187 (293)
T 3t15_A          110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR  187 (293)
T ss_dssp             --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred             hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence                                                       0147899999999999999999999999887  4799


Q ss_pred             HHHHHHHHHhhcc
Q 048723           97 EAFMVLAKSYLDI  109 (236)
Q Consensus        97 ~~~~~i~~~~l~~  109 (236)
                      +++..|++.++..
T Consensus       188 ~~r~~Il~~~~~~  200 (293)
T 3t15_A          188 EDRIGVCTGIFRT  200 (293)
T ss_dssp             HHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhccC
Confidence            9999999988754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.39  E-value=2.7e-13  Score=124.83  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCC-CCcceEEECCCCCChHHHHHHHHhhcCCcc-------------cC--------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKA-WKRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------VG--------   61 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~-~~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------~~--------   61 (236)
                      +.|+.+...+...+.+..++..+... ++++++|+||||||||+++++||..++.++             .|        
T Consensus        22 ~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr  101 (444)
T 1g41_A           22 DAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIR  101 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHH
Confidence            45555555554444444444444333 456799999999999999999999998877             00        


Q ss_pred             -------------------------------------------ceEEEEe-ecCccccchHHHhcCCcccEEecccCCHH
Q 048723           62 -------------------------------------------EKGIVFT-TNYVDKLDPALIRRGRMDKRIEMSYCCFE   97 (236)
Q Consensus        62 -------------------------------------------~~~vi~t-tN~~~~ld~al~r~gR~d~~i~~~~p~~~   97 (236)
                                                                 ...++++ ||+++.||++++|+||||+.|+++.|+..
T Consensus       102 ~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~  181 (444)
T 1g41_A          102 DLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV  181 (444)
T ss_dssp             HHHHHHHHHHHHHHHHSCC-------------------------------------------------------------
T ss_pred             HHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence                                                       1112333 99999999999999999999999999876


Q ss_pred             -HHHHH
Q 048723           98 -AFMVL  102 (236)
Q Consensus        98 -~~~~i  102 (236)
                       .+..|
T Consensus       182 ~~~~ei  187 (444)
T 1g41_A          182 SMGVEI  187 (444)
T ss_dssp             ------
T ss_pred             cchhhh
Confidence             44444

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.24  E-value=4.7e-11  Score=103.48  Aligned_cols=103  Identities=23%  Similarity=0.302  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcc---eEEECCCCCChHHHHHHHHhhcCC-------cc--------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRG---YLLYGPPGTGKSTMIAAMANFLNY-------DL--------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg---~lL~GPpGtGKTtlakaia~~l~~-------~~--------------   59 (236)
                      +.++.|.+.+.... .+..+..+|+...++   ++|+||||||||+++++|++.+..       ++              
T Consensus        38 ~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g  116 (309)
T 3syl_A           38 PVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIG  116 (309)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTT
T ss_pred             HHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhccc
Confidence            45566655554433 245566666655443   999999999999999999998732       22              


Q ss_pred             --------------------------------------------------cCceEEEEeecCcc-----ccchHHHhcCC
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVD-----KLDPALIRRGR   84 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~-----~ld~al~r~gR   84 (236)
                                                                        ...+++|+++|...     .++|++++  |
T Consensus       117 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R  194 (309)
T 3syl_A          117 HTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRS--R  194 (309)
T ss_dssp             CHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHH--H
T ss_pred             ccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHH--h
Confidence                                                              12567888887543     35788988  8


Q ss_pred             cccEEecccCCHHHHHHHHHHhhcc
Q 048723           85 MDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        85 ~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                      |+..+.|+.|+.+.+..|++.++..
T Consensus       195 ~~~~i~~~~~~~~~~~~il~~~l~~  219 (309)
T 3syl_A          195 IAHHIEFPDYSDEELFEIAGHMLDD  219 (309)
T ss_dssp             EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999988753

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.23  E-value=1.6e-10  Score=101.54  Aligned_cols=104  Identities=12%  Similarity=0.100  Sum_probs=77.3

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------cC-
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------VG-   61 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------~~-   61 (236)
                      .++++|+||||||||+++++|+..++.++                                                .+ 
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~  134 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYR  134 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhcc
Confidence            45699999999999999999999998776                                                01 


Q ss_pred             -------------------ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhHH-HHHHH
Q 048723           62 -------------------EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFA-EINSL  121 (236)
Q Consensus        62 -------------------~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~~-~i~~l  121 (236)
                                         .+.+|++||....+++++++  |++..+.++.|+.+++..++..+.......... .+..+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l  212 (338)
T 3pfi_A          135 LDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEI  212 (338)
T ss_dssp             C---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred             chhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence                               16899999999999999998  899999999999999999988876533222222 23333


Q ss_pred             HHcCCCCHHHHHHHH
Q 048723          122 LAETNMASADVAENL  136 (236)
Q Consensus       122 l~~~gls~a~i~~~l  136 (236)
                      +....-++.++.+.+
T Consensus       213 ~~~~~G~~r~l~~~l  227 (338)
T 3pfi_A          213 AKRSRSTPRIALRLL  227 (338)
T ss_dssp             HHTTTTCHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHH
Confidence            333334455444443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.12  E-value=3.9e-11  Score=110.59  Aligned_cols=30  Identities=47%  Similarity=0.653  Sum_probs=27.2

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +..+++++||+||||||||+++++||+.++
T Consensus        59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           59 KKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            455678899999999999999999999987

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.09  E-value=8.1e-10  Score=102.24  Aligned_cols=76  Identities=24%  Similarity=0.351  Sum_probs=62.7

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhc----------CCcc-----------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFL----------NYDL-----------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l----------~~~~-----------------------------------------   59 (236)
                      ..++||+||||||||+++++|+..+          +.++                                         
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~~~~a~  280 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDAS  280 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEECC-----
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEeCchhHH
Confidence            4569999999999999999999986          2211                                         


Q ss_pred             --------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           60 --------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        60 --------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                              .+.+.+|++||...     .+|++++|  ||. .|.++.|+.+.+..|++.++..
T Consensus       281 ~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~  340 (468)
T 3pxg_A          281 NILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR  340 (468)
T ss_dssp             ---CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred             HHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHH
Confidence                    23578889999887     68999999  996 5999999999999999977543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.07  E-value=1.2e-09  Score=93.34  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=28.7

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +...+++++|+||||||||+++++|+..++.++
T Consensus        60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~   92 (272)
T 1d2n_A           60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF   92 (272)
T ss_dssp             SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE
T ss_pred             CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            455667799999999999999999999988765

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.05  E-value=1.6e-09  Score=95.06  Aligned_cols=77  Identities=22%  Similarity=0.292  Sum_probs=62.5

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------   59 (236)
                      ..+++|+||||||||+++++|++.++.++                                                   
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~  125 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKV  125 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCHHH
Confidence            35699999999999999999999876543                                                   


Q ss_pred             ----------------------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           60 ----------------------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        60 ----------------------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                                            ....++++|+|..+     .+++++++  ||+..+.+++|+.+.+..|++.+...
T Consensus       126 ~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~  200 (331)
T 2r44_A          126 QSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM  200 (331)
T ss_dssp             HHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence                                  01346667777543     38999999  99888999999999999999887653

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.03  E-value=4.2e-10  Score=107.24  Aligned_cols=42  Identities=36%  Similarity=0.414  Sum_probs=30.3

Q ss_pred             HhhhChhHHhhhCCCCCc--ceEEECCCCCChHHHHHHHHhhcC
Q 048723           15 KFSEGKEYCAKIGKAWKR--GYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        15 ~~~~~~~~~~~~~~~~~r--g~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++....+++.+.+....  .++|+|||||||||++++|++.+.
T Consensus        42 ~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           42 QVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             eEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            334444555555544433  499999999999999999998763

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.01  E-value=1.3e-09  Score=94.78  Aligned_cols=105  Identities=16%  Similarity=0.148  Sum_probs=78.2

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc-------------------------------------------------c-
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL-------------------------------------------------V-   60 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~-------------------------------------------------~-   60 (236)
                      .++++|+||||||||+++++|+..++.++                                                 . 
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~  117 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDF  117 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHS
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhh
Confidence            45699999999999999999999887665                                                 0 


Q ss_pred             -------------------CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhhH-HHHHH
Q 048723           61 -------------------GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFF-AEINS  120 (236)
Q Consensus        61 -------------------~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~~-~~i~~  120 (236)
                                         ..+.+|++||....+++++++  |++..+.++.|+.+++..++..++........ ..+..
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~  195 (324)
T 1hqc_A          118 VMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALE  195 (324)
T ss_dssp             EEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred             hhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence                               125799999999999999988  89889999999999999898887643222221 22344


Q ss_pred             HHHcCCCCHHHHHHHHc
Q 048723          121 LLAETNMASADVAENLM  137 (236)
Q Consensus       121 ll~~~gls~a~i~~~l~  137 (236)
                      ++...+-.+.++.+.+.
T Consensus       196 l~~~~~G~~r~l~~~l~  212 (324)
T 1hqc_A          196 IGRRSRGTMRVAKRLFR  212 (324)
T ss_dssp             HHHHSCSCHHHHHHHHH
T ss_pred             HHHHccCCHHHHHHHHH
Confidence            44434445666665544

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.01  E-value=2e-09  Score=87.24  Aligned_cols=73  Identities=23%  Similarity=0.286  Sum_probs=59.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc-----c------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD-----L------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~-----~------------------------------------------------   59 (236)
                      .++|+||||||||+++++++..+...     +                                                
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~  119 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ  119 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHH
Confidence            49999999999999999999875211     1                                                


Q ss_pred             ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                .....+|+++|....+++++.+  |+. .+.++.++.++...++..++.
T Consensus       120 ~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~  175 (226)
T 2chg_A          120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE  175 (226)
T ss_dssp             HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence                      2367889999999999999988  775 889999999888888877653

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.99  E-value=3e-09  Score=92.90  Aligned_cols=74  Identities=26%  Similarity=0.279  Sum_probs=61.6

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------   59 (236)
                      .+..++++||||||||+++++|++.++.++                                                  
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L  126 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHL  126 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHH
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHH
Confidence            345588899999999999999999987665                                                  


Q ss_pred             -------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           60 -------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        60 -------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                             ...+.+|+++|++..+++++++  |+ ..+.|+.|+.+++..++..+
T Consensus       127 ~~~le~~~~~~~iI~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~  177 (324)
T 3u61_B          127 RSFMEAYSSNCSIIITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQM  177 (324)
T ss_dssp             HHHHHHHGGGCEEEEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcEEEEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHH
Confidence                   2368899999999999999999  77 47999999988877665554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.98  E-value=8.9e-10  Score=97.44  Aligned_cols=75  Identities=24%  Similarity=0.291  Sum_probs=61.6

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------cC--
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------VG--   61 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------~~--   61 (236)
                      ..++|+||||||||||+++||+.++.++                                                ..  
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~  131 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQI  131 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhccc
Confidence            4599999999999999999999985443                                                00  


Q ss_pred             ------------------ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 ------------------EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ------------------~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                        ...++.+++++..|++++++  |+...+.++.++.+.+..+++.+..
T Consensus       132 ~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~  194 (334)
T 1in4_A          132 DIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAAS  194 (334)
T ss_dssp             CC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             ceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHH
Confidence                              13556688889999999998  8988889999999999988887653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.96  E-value=2.2e-09  Score=92.47  Aligned_cols=42  Identities=17%  Similarity=0.151  Sum_probs=35.2

Q ss_pred             eEEEEe----ecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           63 KGIVFT----TNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        63 ~~vi~t----tN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                      +++|++    ++.+..+++++++  ||+..+.|+.|+.+++..|++..
T Consensus       169 ~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~  214 (310)
T 1ofh_A          169 ILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP  214 (310)
T ss_dssp             CEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred             EEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence            466777    4577889999998  99988999999999999888853

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.96  E-value=1.4e-09  Score=96.35  Aligned_cols=36  Identities=6%  Similarity=-0.048  Sum_probs=30.0

Q ss_pred             CccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           71 YVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        71 ~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                      .+..+++++++  |+.. +.|+.|+.+++..+++.++..
T Consensus       239 ~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~  274 (368)
T 3uk6_A          239 SPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEE  274 (368)
T ss_dssp             EETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHH
T ss_pred             CcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHH
Confidence            57789999999  8854 799999999999999877653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.95  E-value=2.7e-09  Score=92.24  Aligned_cols=45  Identities=16%  Similarity=0.290  Sum_probs=39.0

Q ss_pred             ceEEEEeecC--------------------------ccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNY--------------------------VDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~--------------------------~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ++++|+|||.                          ...++++++.  |++..+.+..|+.+.+..|+..++.
T Consensus       160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~  230 (311)
T 4fcw_A          160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMS  230 (311)
T ss_dssp             TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred             CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence            5669999998                          5578899987  9999999999999999999998764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.94  E-value=4.3e-09  Score=92.10  Aligned_cols=75  Identities=20%  Similarity=0.322  Sum_probs=58.5

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhc---CCcc------------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFL---NYDL------------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l---~~~~------------------------------------------------   59 (236)
                      .++++|+|||||||||++++|++.+   +.++                                                
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~  116 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT  116 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHH
Confidence            4569999999999999999999988   5554                                                


Q ss_pred             -------------cCceEEEEeecCcc---ccchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhc
Q 048723           60 -------------VGEKGIVFTTNYVD---KLDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -------------~~~~~vi~ttN~~~---~ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                   .+..+|+++++.+.   .+++++++  |++  ..+.++. +.+++..++..++.
T Consensus       117 ~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~  180 (324)
T 1l8q_A          117 QIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK  180 (324)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence                         22445555555555   68899998  664  6788888 99999999888764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.94  E-value=3.3e-09  Score=97.79  Aligned_cols=74  Identities=27%  Similarity=0.423  Sum_probs=61.7

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc----------------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL----------------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~----------------------------------------------------   59 (236)
                      ++++|+|||||||||++++|++.++.++                                                    
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l  130 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI  130 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH
Confidence            4699999999999999999999998876                                                    


Q ss_pred             -cCceEEEEee--cCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 -VGEKGIVFTT--NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -~~~~~vi~tt--N~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                       .+.+.+|++|  |....+++++++  |+ .++.+..|+.+.+..++..++.
T Consensus       131 e~~~v~lI~att~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~  179 (447)
T 3pvs_A          131 EDGTITFIGATTENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAME  179 (447)
T ss_dssp             HTTSCEEEEEESSCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHH
T ss_pred             hcCceEEEecCCCCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHH
Confidence             3466777776  566689999999  66 4678999999999988888764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.92  E-value=3.8e-09  Score=86.41  Aligned_cols=44  Identities=14%  Similarity=0.139  Sum_probs=37.6

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ...+|++||....+++++++  |+ ..+.++.++.++...++..++.
T Consensus       156 ~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~  199 (250)
T 1njg_A          156 HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN  199 (250)
T ss_dssp             TEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHH
Confidence            67889999999999999888  65 7789999999999988887764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.92  E-value=1.1e-09  Score=86.71  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=31.4

Q ss_pred             ceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHH
Q 048723           62 EKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLA  103 (236)
Q Consensus        62 ~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~  103 (236)
                      .+.+|+++|...     .+++++++  ||+ .+.+..|+.+++..++
T Consensus       151 ~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          151 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             SCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred             CeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence            567888888776     68899988  886 6899999998877653

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=98.87  E-value=1.1e-08  Score=89.82  Aligned_cols=44  Identities=18%  Similarity=0.119  Sum_probs=35.5

Q ss_pred             ceEEEEeecCcc-ccchHHHhcCCcccEEecccC-CHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVD-KLDPALIRRGRMDKRIEMSYC-CFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~-~ld~al~r~gR~d~~i~~~~p-~~~~~~~i~~~~l  107 (236)
                      ..++|+++|..+ .+++++++  ||+..+.++.| +.+.+..|+..++
T Consensus       187 ~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~  232 (350)
T 1g8p_A          187 RFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD  232 (350)
T ss_dssp             CEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence            567889999755 89999999  99888999999 5777767777643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.87  E-value=2e-09  Score=88.93  Aligned_cols=76  Identities=14%  Similarity=0.180  Sum_probs=55.8

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCC---cc------------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNY---DL------------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~---~~------------------------------------------------   59 (236)
                      .++++|+||||||||+++++|+..+..   .+                                                
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~  131 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYN  131 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence            456999999999999999999987642   11                                                


Q ss_pred             ----cCceEEEEeecC-cc---ccchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhc
Q 048723           60 ----VGEKGIVFTTNY-VD---KLDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ----~~~~~vi~ttN~-~~---~ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                          .+...+|+++|. +.   .+++++.+  |+.  ..+.++.|+.+.+..++..++.
T Consensus       132 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~  188 (242)
T 3bos_A          132 RVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAA  188 (242)
T ss_dssp             HHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred             HHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence                112235666653 32   45678887  554  8899999999999988887764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.85  E-value=1.8e-08  Score=98.25  Aligned_cols=76  Identities=24%  Similarity=0.349  Sum_probs=63.5

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhc----------CCcc----------------------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFL----------NYDL----------------------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l----------~~~~----------------------------------------   59 (236)
                      .+.++||+||||||||+++++||..+          +..+                                        
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~~~~  279 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDA  279 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEECC----
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEEEcCchhH
Confidence            34569999999999999999999986          2211                                        


Q ss_pred             ---------cCceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ---------VGEKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ---------~~~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                               .+.+.+|++||...     .+|++++|  || ..|.++.|+.+.+..|++.+..
T Consensus       280 ~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~  339 (758)
T 3pxi_A          280 SNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRD  339 (758)
T ss_dssp             ----CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHH
Confidence                     24678889999888     79999999  99 5699999999999999997654

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=98.82  E-value=2.7e-08  Score=88.60  Aligned_cols=30  Identities=33%  Similarity=0.610  Sum_probs=27.0

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .+++++|+||||||||+++++||..++.+|
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~   79 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPF   79 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            356699999999999999999999998777

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.82  E-value=4.2e-09  Score=96.74  Aligned_cols=76  Identities=20%  Similarity=0.341  Sum_probs=57.5

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhc-----CCcc----------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFL-----NYDL----------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l-----~~~~----------------------------------------------   59 (236)
                      ..+++|+||||||||||+++|++.+     +..+                                              
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~  209 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK  209 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence            4569999999999999999999987     3333                                              


Q ss_pred             ---------------cCceEEEEeec-Cccc---cchHHHhcCCcc--cEEecccCCHHHHHHHHHHhhc
Q 048723           60 ---------------VGEKGIVFTTN-YVDK---LDPALIRRGRMD--KRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ---------------~~~~~vi~ttN-~~~~---ld~al~r~gR~d--~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                     ..+..+|++|+ .+..   +++++++  |++  ..+.++.|+.+.+..++..++.
T Consensus       210 ~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~  277 (440)
T 2z4s_A          210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE  277 (440)
T ss_dssp             HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence                           11234444554 4444   8899998  664  7889999999999999887764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.78  E-value=6.1e-09  Score=93.31  Aligned_cols=56  Identities=23%  Similarity=0.385  Sum_probs=46.4

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ...++.++++.+.+|  +.|+||||||||||+++|++.+.++   .|-|.+....+..+++
T Consensus        27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~   84 (355)
T 1z47_A           27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP   84 (355)
T ss_dssp             STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred             CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence            345788899999888  8899999999999999999999887   7777777666655655

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.78  E-value=2.1e-09  Score=97.17  Aligned_cols=58  Identities=21%  Similarity=0.348  Sum_probs=49.6

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .....++++++.+.+|  +.|+||||||||||+++|++.+.++   .|-|.+....+..+++.
T Consensus        14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~   73 (381)
T 3rlf_A           14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPA   73 (381)
T ss_dssp             TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred             CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHH
Confidence            4455788999999998  8899999999999999999999888   78888887777777764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.77  E-value=7.1e-09  Score=93.20  Aligned_cols=138  Identities=14%  Similarity=0.198  Sum_probs=82.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh--cCCcccEEecc--cC
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR--RGRMDKRIEMS--YC   94 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r--~gR~d~~i~~~--~p   94 (236)
                      ..+++++|.+++|  +.|+||||||||||+++|++.+.++   .|-|.+...++..+++.-++  +.++.++++-+  +|
T Consensus        42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~  118 (366)
T 3tui_C           42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS  118 (366)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCT
T ss_pred             EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCC
Confidence            3688899999999  8899999999999999999999888   78888888888777764332  11454444321  12


Q ss_pred             CHHHHHHH--HHHhhcccchhhHHHHHHHHHc-----------CCCCHHHHHHHHcccccccChH-------------HH
Q 048723           95 CFEAFMVL--AKSYLDIESHAFFAEINSLLAE-----------TNMASADVAENLMPKSDEEDAD-------------SC  148 (236)
Q Consensus        95 ~~~~~~~i--~~~~l~~~~~~~~~~i~~ll~~-----------~gls~a~i~~~l~~~~~~~~~~-------------~~  148 (236)
                      ...-+..+  ...+.+.........+..+++.           ..+|+++-+...++++....+.             ..
T Consensus       119 ~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~  198 (366)
T 3tui_C          119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT  198 (366)
T ss_dssp             TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHH
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence            21222222  1122222222223334444332           3679998887777644443322             24


Q ss_pred             HHHHHHHHHHHHH
Q 048723          149 LKNLIEALKVAKE  161 (236)
Q Consensus       149 ~~~~~~~L~~~~~  161 (236)
                      ...++..|++..+
T Consensus       199 ~~~i~~lL~~l~~  211 (366)
T 3tui_C          199 TRSILELLKDINR  211 (366)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4555556655443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.75  E-value=3.2e-08  Score=96.23  Aligned_cols=45  Identities=18%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             ceEEEEeecCcc-------------------------ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVD-------------------------KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~-------------------------~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      +++||+|||...                         .++|+++.  |+|.+|.|+.++.+.+..|+..++.
T Consensus       598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~  667 (758)
T 1r6b_X          598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV  667 (758)
T ss_dssp             TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence            466999999743                         67889988  9999999999999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.75  E-value=6.7e-09  Score=93.29  Aligned_cols=58  Identities=29%  Similarity=0.411  Sum_probs=47.9

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ....++.++++.+.+|  +.|+||||||||||+++|++.+.++   .|-|.+....+..+++.
T Consensus        14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~   73 (362)
T 2it1_A           14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK   73 (362)
T ss_dssp             SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred             CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHh
Confidence            3345788899999888  7899999999999999999999887   77787777666666653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.73  E-value=4.3e-08  Score=95.52  Aligned_cols=74  Identities=20%  Similarity=0.377  Sum_probs=59.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc---CCcc--------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL---NYDL--------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l---~~~~--------------------------------------------------   59 (236)
                      ++||+||||||||+++++|+..+   +.++                                                  
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~  602 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQV  602 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHH
Confidence            49999999999999999999987   2222                                                  


Q ss_pred             ---------------cCceEEEEeecCccc------------cchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ---------------VGEKGIVFTTNYVDK------------LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ---------------~~~~~vi~ttN~~~~------------ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                     ..++++|+|||....            ++|+++.  |+|.+|.|+.|+.+.+..|+..++.
T Consensus       603 le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~  676 (758)
T 3pxi_A          603 LEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD  676 (758)
T ss_dssp             HHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred             hccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence                           114689999996443            7888888  9999999999999999999988763

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.71  E-value=7e-09  Score=89.80  Aligned_cols=49  Identities=27%  Similarity=0.381  Sum_probs=42.5

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .+++++++.+++|  +.|+||||||||||+++|++.+.+.   .|-|.+.+.++
T Consensus        22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i   72 (275)
T 3gfo_A           22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPI   72 (275)
T ss_dssp             EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEC
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEEC
Confidence            3788999999998  8899999999999999999999887   67777766555

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.70  E-value=1.3e-07  Score=83.40  Aligned_cols=45  Identities=7%  Similarity=-0.009  Sum_probs=34.9

Q ss_pred             ceEEEEeecCccccc----hHHHhcCCcc-cEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVDKLD----PALIRRGRMD-KRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld----~al~r~gR~d-~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .+++|+.+|.++..+    +++++  |++ ..|.|+.++.++...|++..+.
T Consensus       163 ~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~  212 (318)
T 3te6_A          163 KLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK  212 (318)
T ss_dssp             CEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred             cEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence            678899999886543    34445  675 6789999999999999888764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.70  E-value=1.5e-07  Score=81.12  Aligned_cols=73  Identities=23%  Similarity=0.289  Sum_probs=59.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC-Cc----c------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN-YD----L------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~-~~----~------------------------------------------------   59 (236)
                      .++|+||||||||++++++++.+. ..    +                                                
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~  119 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ  119 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHH
Confidence            399999999999999999998751 10    1                                                


Q ss_pred             ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                .....+|+++|.+..+++++.+  |+ ..+.|..|+.+++..++..++.
T Consensus       120 ~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~  175 (319)
T 2chq_A          120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RC-AVFRFKPVPKEAMKKRLLEICE  175 (319)
T ss_dssp             HTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT--TC-EEEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCeEEEEeCChhhcchHHHh--hC-eEEEecCCCHHHHHHHHHHHHH
Confidence                      2367889999999999999988  66 4789999999888888877654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.70  E-value=9.1e-09  Score=86.26  Aligned_cols=56  Identities=25%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ...++.++++.+.+|  +.|+||||||||||+++|++.+.+.   .|-|.+....+..+++
T Consensus        16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~   73 (224)
T 2pcj_A           16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNE   73 (224)
T ss_dssp             TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCH
T ss_pred             CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCH
Confidence            345788899999888  8899999999999999999999877   6777776666655554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.69  E-value=3.2e-09  Score=91.48  Aligned_cols=61  Identities=16%  Similarity=0.344  Sum_probs=50.4

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ....+++++++.+.+|  +.|+||||||||||+++|++.+.+.   .|-|.+.+..+..+++..++
T Consensus        22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~   84 (266)
T 4g1u_C           22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALA   84 (266)
T ss_dssp             TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHH
T ss_pred             CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHh
Confidence            3455788899999988  8899999999999999999999887   77788777777777765444

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.69  E-value=6.6e-09  Score=89.03  Aligned_cols=53  Identities=23%  Similarity=0.324  Sum_probs=43.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|.|.+....+..
T Consensus        27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~   81 (256)
T 1vpl_A           27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVE   81 (256)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTT
T ss_pred             CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCc
Confidence            345788889999888  8899999999999999999999877   6777766544433

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.68  E-value=3.8e-09  Score=94.74  Aligned_cols=53  Identities=21%  Similarity=0.379  Sum_probs=44.4

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      |.....++++++.+.+|  +.|+||||||||||+++|++.+.++   .|-|.+....+
T Consensus        14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i   68 (359)
T 3fvq_A           14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTI   68 (359)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEE
T ss_pred             ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEC
Confidence            34455788999999998  8899999999999999999999888   67777766554

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.68  E-value=7.9e-09  Score=87.28  Aligned_cols=55  Identities=24%  Similarity=0.327  Sum_probs=47.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      .+++++++.+.+|  +.|+||||||||||+++|++.+.+.   .|-|.+...++..+++.
T Consensus        19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~   75 (235)
T 3tif_A           19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDD   75 (235)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred             eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHH
Confidence            3688899999988  8899999999999999999999888   78888877767666654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.68  E-value=5.7e-09  Score=88.40  Aligned_cols=57  Identities=23%  Similarity=0.331  Sum_probs=46.6

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ...++.++++.+++|  +.|+||||+|||||+++|++.+.+.   .|.|.+....+...++.
T Consensus        18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~   76 (240)
T 1ji0_A           18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAH   76 (240)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred             CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHH
Confidence            344788899999888  8899999999999999999999877   77777776666555554

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.67  E-value=5.1e-09  Score=94.38  Aligned_cols=57  Identities=30%  Similarity=0.412  Sum_probs=47.4

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ...++.++++.+.+|  +.|+||||||||||+++|++.+.+.   .|.|.+....+..+++.
T Consensus        23 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~   81 (372)
T 1v43_A           23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK   81 (372)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred             CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChh
Confidence            344688899999888  7899999999999999999999887   78788777666666653

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=98.66  E-value=2.1e-08  Score=95.51  Aligned_cols=73  Identities=25%  Similarity=0.254  Sum_probs=58.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~-----------------------------------------------------   59 (236)
                      ++||+||||||||+++++|+..+++.+                                                     
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q  408 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR  408 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHH
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHh
Confidence            599999999999999999999886432                                                     


Q ss_pred             -----------------------cCceEEEEeecCcc-------------ccchHHHhcCCccc-EEecccCCHHHHHHH
Q 048723           60 -----------------------VGEKGIVFTTNYVD-------------KLDPALIRRGRMDK-RIEMSYCCFEAFMVL  102 (236)
Q Consensus        60 -----------------------~~~~~vi~ttN~~~-------------~ld~al~r~gR~d~-~i~~~~p~~~~~~~i  102 (236)
                                             .....||+|+|+..             .|++++++  |||. .+..++|+.+ ...|
T Consensus       409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i  485 (595)
T 3f9v_A          409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DREL  485 (595)
T ss_dssp             HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHH
T ss_pred             hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHH
Confidence                                   11456999999887             89999999  9985 4566778777 7777


Q ss_pred             HHHhhc
Q 048723          103 AKSYLD  108 (236)
Q Consensus       103 ~~~~l~  108 (236)
                      .++.+.
T Consensus       486 ~~~il~  491 (595)
T 3f9v_A          486 ANYILD  491 (595)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            776654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.66  E-value=6.1e-07  Score=79.40  Aligned_cols=45  Identities=11%  Similarity=0.310  Sum_probs=38.4

Q ss_pred             ceEEEEeecCc---cccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYV---DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~---~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .+.+|++||..   +.+++++++  |++..+.++.++.++...++..++.
T Consensus       164 ~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~  211 (384)
T 2qby_B          164 NISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE  211 (384)
T ss_dssp             CEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence            56788999987   678999888  8877999999999999999988754

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.66  E-value=1.8e-07  Score=82.51  Aligned_cols=45  Identities=13%  Similarity=0.130  Sum_probs=37.5

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ..+++|++|+.+..+++.+++  |. ..+.+..|+.++...++..++.
T Consensus       148 ~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~  192 (373)
T 1jr3_A          148 EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN  192 (373)
T ss_dssp             SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred             CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHH
Confidence            367888999999999999887  55 6789999999998888887664

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.66  E-value=2.2e-08  Score=79.22  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=23.2

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..++++|+||||||||+++++++..+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34569999999999999999999987

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=98.66  E-value=8.6e-08  Score=89.50  Aligned_cols=43  Identities=21%  Similarity=0.091  Sum_probs=32.1

Q ss_pred             eEEEEeecCccc---cchHHHhcCCcccEEecccCCH-HHHHHHHHHhh
Q 048723           63 KGIVFTTNYVDK---LDPALIRRGRMDKRIEMSYCCF-EAFMVLAKSYL  107 (236)
Q Consensus        63 ~~vi~ttN~~~~---ld~al~r~gR~d~~i~~~~p~~-~~~~~i~~~~l  107 (236)
                      .++|++||.+..   +.+++++  ||...+.+++|+. +.+..|++.+.
T Consensus       150 ~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~  196 (500)
T 3nbx_X          150 RLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ  196 (500)
T ss_dssp             CEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred             hhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence            356888886433   4458998  8989999999987 66777777654

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.66  E-value=8.9e-08  Score=82.77  Aligned_cols=73  Identities=22%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc-----c------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD-----L------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~-----~------------------------------------------------   59 (236)
                      .++|+||||||||++++++++.+...     +                                                
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~  127 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ  127 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHH
Confidence            39999999999999999999875211     0                                                


Q ss_pred             ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                .....+|+++|.+..+++++.+  |+. .+.|+.++.+....++..++.
T Consensus       128 ~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~  183 (327)
T 1iqp_A          128 QALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAE  183 (327)
T ss_dssp             HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHH
Confidence                      2367888899999999999988  664 788888998888888776653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.65  E-value=6e-09  Score=93.50  Aligned_cols=58  Identities=24%  Similarity=0.365  Sum_probs=47.9

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ....++.++++.+.+|  +.|+||||||||||+++|++.+.++   .|-|.+....+..+++.
T Consensus        14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~   73 (359)
T 2yyz_A           14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPK   73 (359)
T ss_dssp             TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred             CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChh
Confidence            3345688899999888  8899999999999999999999887   77788777666666653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.64  E-value=2.1e-08  Score=89.58  Aligned_cols=54  Identities=24%  Similarity=0.469  Sum_probs=46.0

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      ++.++++.+.+|  +.|+||||||||||+++|++...++   .|.|.+....+..+++.
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~   70 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE   70 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchh
Confidence            788899999888  8899999999999999999999887   77787777666666653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.64  E-value=2.5e-07  Score=81.63  Aligned_cols=43  Identities=12%  Similarity=-0.033  Sum_probs=36.2

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ..++|++||+++.+++.+++  |. ..+.|+.|+.++...++....
T Consensus       138 ~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~  180 (334)
T 1a5t_A          138 ETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV  180 (334)
T ss_dssp             TEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC
T ss_pred             CeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc
Confidence            67888999999999999998  54 568999999988888777665

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.64  E-value=1.8e-07  Score=87.35  Aligned_cols=30  Identities=47%  Similarity=0.781  Sum_probs=26.0

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ..++++|+||||||||+++++||+.++.++
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~  105 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDI  105 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            457799999999999999999999876544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.63  E-value=2.6e-08  Score=85.41  Aligned_cols=51  Identities=22%  Similarity=0.361  Sum_probs=42.5

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ...+++++++.+.+|  +.|+||||||||||+++|++.+.+.   .|-|.+.+..+
T Consensus        18 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~   70 (262)
T 1b0u_A           18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNI   70 (262)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEC
T ss_pred             CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEc
Confidence            345788899999998  8899999999999999999999877   67777665444

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.63  E-value=6e-08  Score=85.49  Aligned_cols=71  Identities=32%  Similarity=0.479  Sum_probs=54.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc---------------------------------c---------------------
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD---------------------------------L---------------------   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~---------------------------------~---------------------   59 (236)
                      ++|+|||||||||+++++++.+...                                 +                     
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~  128 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN  128 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHH
Confidence            9999999999999999999975211                                 0                     


Q ss_pred             ---------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 ---------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 ---------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                               .....+++++|.+..+++++++  |. ..+.|..++.+.....+...+
T Consensus       129 ~L~~~le~~~~~~~~il~~n~~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~  182 (340)
T 1sxj_C          129 ALRRVIERYTKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVL  182 (340)
T ss_dssp             HHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCeEEEEEecCccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHH
Confidence                     1235677888999999999988  65 467887777777766666554

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.63  E-value=1.5e-07  Score=82.41  Aligned_cols=43  Identities=9%  Similarity=0.057  Sum_probs=34.8

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ...+|+++|++..+++++++  |+. .+.+..++.+....++...+
T Consensus       163 ~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~  205 (353)
T 1sxj_D          163 VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFIS  205 (353)
T ss_dssp             TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred             CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHH
Confidence            45678889999999999998  664 78888888888887777654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.62  E-value=7.6e-09  Score=93.25  Aligned_cols=54  Identities=22%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      ....++.++++.+.+|  +.|+||||||||||+++|++.+.++   .|.|.+....+..
T Consensus        14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~   69 (372)
T 1g29_1           14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVAD   69 (372)
T ss_dssp             TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEE
T ss_pred             CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECcc
Confidence            3345688899999888  8899999999999999999999887   6777665544433

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.61  E-value=2.6e-08  Score=85.65  Aligned_cols=51  Identities=25%  Similarity=0.445  Sum_probs=42.5

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ...+++++++.+.+|  +.|+||||||||||+++|++.+.+.   .|.|.+...++
T Consensus        36 ~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i   88 (263)
T 2olj_A           36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINL   88 (263)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEES
T ss_pred             CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence            345788899999888  8899999999999999999999877   67777765444

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.61  E-value=9.5e-09  Score=91.99  Aligned_cols=49  Identities=20%  Similarity=0.373  Sum_probs=41.4

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      +++++++.+.+|  +.|+||||||||||+++|++.+.++   .|.|.+....+.
T Consensus        20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~   70 (353)
T 1oxx_K           20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA   70 (353)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEE
T ss_pred             eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECc
Confidence            678899999888  8899999999999999999999887   677766554443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=98.60  E-value=3.7e-07  Score=81.45  Aligned_cols=30  Identities=37%  Similarity=0.628  Sum_probs=26.3

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ...+++|+||||||||+++++|+..++.++
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~  100 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPI  100 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            345699999999999999999999987665

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.60  E-value=2.7e-07  Score=81.29  Aligned_cols=44  Identities=11%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             eEEEEeecCc---cccchHHHhcCCccc-EEecccCCHHHHHHHHHHhhc
Q 048723           63 KGIVFTTNYV---DKLDPALIRRGRMDK-RIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        63 ~~vi~ttN~~---~~ld~al~r~gR~d~-~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      +.+|++||.+   +.+++++.+  |+.. .+.|+.++.+++..++..++.
T Consensus       168 ~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~  215 (387)
T 2v1u_A          168 VSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE  215 (387)
T ss_dssp             CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence            4788889887   778999988  7765 889999999999999887754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.59  E-value=3.1e-07  Score=90.67  Aligned_cols=75  Identities=24%  Similarity=0.404  Sum_probs=60.1

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhc----------CCcc-----------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFL----------NYDL-----------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l----------~~~~-----------------------------------------   59 (236)
                      +++++|+||||||||+++++|+..+          +..+                                         
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ID  270 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID  270 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            4569999999999999999999986          3332                                         


Q ss_pred             --------------------------cCceEEEEeecCcc----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 --------------------------VGEKGIVFTTNYVD----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 --------------------------~~~~~vi~ttN~~~----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                                .+.+.+|++||..+    .+|++++|  ||+. |.++.|+.+.+..|++.++.
T Consensus       271 Ei~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~  346 (854)
T 1qvr_A          271 ELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE  346 (854)
T ss_dssp             CC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred             cHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence                                      23567888888765    37899988  8975 89999999999989876543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.59  E-value=1e-08  Score=87.70  Aligned_cols=57  Identities=28%  Similarity=0.508  Sum_probs=46.2

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      ....++.++++.+++|  +.|+||||||||||+++|++.+.+.   .|.|.+....+...++
T Consensus        18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~   76 (257)
T 1g6h_A           18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP   76 (257)
T ss_dssp             TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCH
T ss_pred             CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence            3345788999999999  8899999999999999999999877   6777776655555543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.56  E-value=8.1e-09  Score=90.72  Aligned_cols=58  Identities=24%  Similarity=0.379  Sum_probs=50.4

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .++++++|.+++|  +.|+||+|+|||||+++|++.+.+.   .|-|.+.+.++..++..-+|
T Consensus        68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r  127 (306)
T 3nh6_A           68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLR  127 (306)
T ss_dssp             EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHH
T ss_pred             ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHh
Confidence            4677888888888  8899999999999999999999888   78888888888888876665

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.55  E-value=1.8e-08  Score=85.72  Aligned_cols=59  Identities=22%  Similarity=0.340  Sum_probs=47.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..++.++++.+++|  +.|+||+|||||||+++|++.+.+.   .|-|.+...++..+++..+|
T Consensus        22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~   82 (247)
T 2ff7_A           22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLR   82 (247)
T ss_dssp             CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHH
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHH
Confidence            45788899999888  8899999999999999999999887   67777776666666554333

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.53  E-value=1.7e-08  Score=87.44  Aligned_cols=60  Identities=22%  Similarity=0.389  Sum_probs=46.6

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc--ccchHHHh
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD--KLDPALIR   81 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~--~ld~al~r   81 (236)
                      ...++.++++.+.+|  +.|+||||||||||+++|++.+.+.   .|.|.+....+.  ..++.-++
T Consensus        33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~   96 (279)
T 2ihy_A           33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVR   96 (279)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHH
T ss_pred             CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHc
Confidence            345788899999888  8899999999999999999999877   677777665554  44443333

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.53  E-value=2.9e-08  Score=85.33  Aligned_cols=49  Identities=18%  Similarity=0.375  Sum_probs=41.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .++.++++.+.+|  +.|+||+|||||||+++|++.+.+.   .|.|.+....+
T Consensus        21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~   71 (266)
T 2yz2_A           21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERK   71 (266)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEC
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEEC
Confidence            4688899999888  7899999999999999999998877   67776655443

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.52  E-value=6.6e-08  Score=80.64  Aligned_cols=49  Identities=20%  Similarity=0.413  Sum_probs=41.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+....+
T Consensus        23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~   73 (214)
T 1sgw_A           23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI   73 (214)
T ss_dssp             EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEG
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEh
Confidence            5788889988888  8899999999999999999998877   67776655433

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.51  E-value=4.6e-07  Score=88.08  Aligned_cols=43  Identities=21%  Similarity=0.345  Sum_probs=34.7

Q ss_pred             ceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ...+|++||..+     .+|+++.|  ||+ .+.++.|+.+++..+++.+.
T Consensus       315 ~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~  362 (758)
T 1r6b_X          315 KIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK  362 (758)
T ss_dssp             CCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHH
T ss_pred             CeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHH
Confidence            567888888653     46888988  896 79999999999998888654

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.50  E-value=4.3e-07  Score=78.27  Aligned_cols=72  Identities=19%  Similarity=0.226  Sum_probs=58.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc-----c-------------------------------------------------
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD-----L-------------------------------------------------   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~-----~-------------------------------------------------   59 (236)
                      ++|+||||+|||+++++++..+...     +                                                 
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~  124 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ  124 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH
Confidence            9999999999999999999874110     0                                                 


Q ss_pred             ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                .....+|++||.+..+++++.+  |+ ..+.|+.|+.++...++..++.
T Consensus       125 ~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~  180 (323)
T 1sxj_B          125 QALRRTMELYSNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIK  180 (323)
T ss_dssp             HTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCceEEEEeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHH
Confidence                      2357888899999999999988  55 4789999999988888877643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.49  E-value=3.6e-08  Score=83.91  Aligned_cols=59  Identities=24%  Similarity=0.334  Sum_probs=45.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhh--cCCcccCceEEEEeecCccccchHHH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANF--LNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~--l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.  +.+.   .|-|.+....+..+++..+
T Consensus        15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~   77 (250)
T 2d2e_A           15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDER   77 (250)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHH
T ss_pred             CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHH
Confidence            345788899999888  889999999999999999997  4444   5667776666666655433

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.49  E-value=2.3e-08  Score=90.66  Aligned_cols=58  Identities=28%  Similarity=0.324  Sum_probs=48.9

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ...++++++.+.+|  +.|+||+|||||||+++|++.+. +   .|-|.+...++..+++.-+|
T Consensus        34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~r   93 (390)
T 3gd7_A           34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWR   93 (390)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHH
T ss_pred             eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHh
Confidence            45788899999888  88999999999999999999986 6   67888888888888876544

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.49  E-value=2.1e-06  Score=75.82  Aligned_cols=45  Identities=18%  Similarity=0.159  Sum_probs=35.3

Q ss_pred             ceEEEEeecCc---cccchHHHhcCCccc-EEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYV---DKLDPALIRRGRMDK-RIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~---~~ld~al~r~gR~d~-~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ...+|+++|.+   +.+++.+.+  |+.. .+.|+.++.++...++..++.
T Consensus       159 ~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~  207 (389)
T 1fnn_A          159 RIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK  207 (389)
T ss_dssp             CEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence            66788888887   678888877  6654 789999998888888877654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.47  E-value=5.6e-07  Score=79.04  Aligned_cols=73  Identities=5%  Similarity=-0.046  Sum_probs=48.0

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccchhh--HHHHHHHHHcCCCCHHHHHHHHc
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAF--FAEINSLLAETNMASADVAENLM  137 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~~~--~~~i~~ll~~~gls~a~i~~~l~  137 (236)
                      ...+|++||+++.+++++++  |+ ..+.|..|+.+++..++...........  ...+..++...+-+..++.+.+.
T Consensus       164 ~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~  238 (354)
T 1sxj_E          164 NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE  238 (354)
T ss_dssp             TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence            56788899999999999988  66 7789999999998888887654222111  11233333433445555554444

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.46  E-value=1.5e-06  Score=76.36  Aligned_cols=45  Identities=20%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             ceEEEEeecCc---cccchHHHhcCCcc-cEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYV---DKLDPALIRRGRMD-KRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~---~~ld~al~r~gR~d-~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .+.+|++||.+   ..+++.+.+  |+. ..+.++.++.++...++..++.
T Consensus       163 ~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~  211 (386)
T 2qby_A          163 KISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ  211 (386)
T ss_dssp             -EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred             eEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence            56788888877   467888887  564 5899999999999988887653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.46  E-value=2e-07  Score=100.90  Aligned_cols=44  Identities=14%  Similarity=0.119  Sum_probs=38.7

Q ss_pred             ceEEEEeecCcc-----ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYVD-----KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~~-----~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ++.+|+++|++.     .||++++|  || ..|.++.|+.+.+..|+..++.
T Consensus      1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A         1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp             SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred             CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence            468899999994     79999999  88 8899999999999999887764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.44  E-value=7.3e-08  Score=82.86  Aligned_cols=59  Identities=24%  Similarity=0.271  Sum_probs=45.0

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc--CCcccCceEEEEeecCccccchHHH
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL--NYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l--~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      ...+++++++.+.+|  +.|+||||+|||||+++|++.+  .+.   .|-|.+...++..+++..+
T Consensus        32 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~   94 (267)
T 2zu0_C           32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDR   94 (267)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHH
T ss_pred             CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHH
Confidence            345788899999888  8899999999999999999985  233   5666666666655655443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=3.2e-07  Score=74.74  Aligned_cols=38  Identities=26%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .+.++++.+.++  ++|+|||||||||+++.|+..++..+
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~   53 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPF   53 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence            466777777666  88999999999999999999998876

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.40  E-value=3.3e-07  Score=86.88  Aligned_cols=59  Identities=24%  Similarity=0.353  Sum_probs=49.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..+++++++.+++|  +.|+||+|||||||+++|++.+.+.   .|.|.+.+.++..+++.-+|
T Consensus       356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~  416 (582)
T 3b5x_A          356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLR  416 (582)
T ss_pred             ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHh
Confidence            34788899988888  8899999999999999999999887   77777777777777765555

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.35  E-value=7.8e-07  Score=77.90  Aligned_cols=71  Identities=17%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc------CCcc----------------------------------------------
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL------NYDL----------------------------------------------   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l------~~~~----------------------------------------------   59 (236)
                      +.++|+||||+|||++++++++.+      .+++                                              
T Consensus        19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a   98 (305)
T 2gno_A           19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA   98 (305)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHH
Confidence            469999999999999999999853      1222                                              


Q ss_pred             -----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 -----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 -----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                 ....++|++||+++.+.|+++.  |   .+.|..++.++....+...+
T Consensus        99 ~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A           99 ANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             HHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence                       3367888888999999999988  6   68888888777777766654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.35  E-value=1e-06  Score=73.10  Aligned_cols=29  Identities=28%  Similarity=0.452  Sum_probs=25.0

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++.+++++|+|||||||||++.+|++.+.
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44456799999999999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.34  E-value=7.6e-08  Score=81.53  Aligned_cols=54  Identities=20%  Similarity=0.336  Sum_probs=43.4

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      ..++.++++.+++|  +.|+||+|||||||+++|++.+.+.   .|.|.+...++..++
T Consensus        15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~   70 (243)
T 1mv5_A           15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNIS   70 (243)
T ss_dssp             SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTS
T ss_pred             CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCC
Confidence            44788899999888  8899999999999999999999877   566666555544444

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.34  E-value=1.1e-07  Score=81.45  Aligned_cols=57  Identities=28%  Similarity=0.342  Sum_probs=43.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .++.++++.+++|  +.|+||+|||||||+++|++.+. +   .|.|.+...++..+++..+|
T Consensus        34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~---~G~I~i~g~~i~~~~~~~~~   92 (260)
T 2ghi_A           34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A---EGDIKIGGKNVNKYNRNSIR   92 (260)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C---EEEEEETTEEGGGBCHHHHH
T ss_pred             ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C---CeEEEECCEEhhhcCHHHHh
Confidence            3688889999888  88999999999999999999886 4   36666655555555544333

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.34  E-value=2.4e-06  Score=73.45  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=22.9

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .+.+++|+||||||||+++++||+.+
T Consensus       103 ~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          103 KRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            34569999999999999999999864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.34  E-value=7.5e-07  Score=87.96  Aligned_cols=33  Identities=15%  Similarity=0.269  Sum_probs=27.5

Q ss_pred             ccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           74 KLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        74 ~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      .+.|+++.  |++.++.|..++.+.+..|+..++.
T Consensus       739 ~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~  771 (854)
T 1qvr_A          739 HFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS  771 (854)
T ss_dssp             TSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred             hCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence            46778877  9998898888999999999888763

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.32  E-value=6.1e-08  Score=83.30  Aligned_cols=48  Identities=25%  Similarity=0.397  Sum_probs=39.2

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ..++.++++.+. |  +.|+||||||||||+++|++.+ +.   .+.|.+....+
T Consensus        18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~   67 (263)
T 2pjz_A           18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEV   67 (263)
T ss_dssp             EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEG
T ss_pred             ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEEC
Confidence            346888888888 8  8899999999999999999999 76   66666655433

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.32  E-value=1.5e-07  Score=81.04  Aligned_cols=58  Identities=21%  Similarity=0.279  Sum_probs=46.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      ..++.++++.+++|  +.|+||+|||||||+++|++.+.+.   .|.|.+...++..+++..+
T Consensus        32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~   91 (271)
T 2ixe_A           32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYL   91 (271)
T ss_dssp             SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHH
T ss_pred             ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHH
Confidence            34788889999888  8899999999999999999999877   6777776666655555433

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.30  E-value=1.8e-07  Score=84.46  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=52.0

Q ss_pred             hHHhhhC--CCCCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------c------
Q 048723           21 EYCAKIG--KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------V------   60 (236)
Q Consensus        21 ~~~~~~~--~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------~------   60 (236)
                      ..+++++  ++.++.++|+|||||||||++++|++.++..+                                .      
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~  236 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLP  236 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCC
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence            4455554  44445589999999999999999998764322                                0      


Q ss_pred             ----------------CceEEEEeecCccccchHHHhcCCcccEEeccc
Q 048723           61 ----------------GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSY   93 (236)
Q Consensus        61 ----------------~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~   93 (236)
                                      |.+.+++++|+++.+ +++++++|++..++..+
T Consensus       237 ~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~  284 (377)
T 1svm_A          237 SGQGINNLDNLRDYLDGSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP  284 (377)
T ss_dssp             CCSHHHHHHTTHHHHHCSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred             ccCcchHHHHHHHHhcCCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence                            112567788888888 67889999887776644

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.29  E-value=3e-07  Score=73.03  Aligned_cols=41  Identities=20%  Similarity=0.101  Sum_probs=34.3

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.....+..+++.+++|  ++|+||+|+|||||+++|++.+ +.
T Consensus        17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~   59 (158)
T 1htw_A           17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH   59 (158)
T ss_dssp             HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC
Confidence            34445677888888888  8899999999999999999999 44

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.27  E-value=1.5e-07  Score=80.24  Aligned_cols=56  Identities=25%  Similarity=0.384  Sum_probs=41.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+.    |-|.+....+..+++.-+
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~----G~i~~~g~~~~~~~~~~~   71 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKL   71 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE----EEEEETTEEGGGSCHHHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC----eEEEECCEECCcCCHHHH
Confidence            3678888888888  7899999999999999999998654    445555544444544333

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.25  E-value=6.1e-07  Score=75.97  Aligned_cols=49  Identities=20%  Similarity=0.361  Sum_probs=37.7

Q ss_pred             HhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           23 CAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        23 ~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      +.++++.+++. +.|+||||||||||+++|++.+.+.   .|.|.+....+..
T Consensus        15 l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~   64 (240)
T 2onk_A           15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITP   64 (240)
T ss_dssp             EEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTT
T ss_pred             EeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCc
Confidence            66666655444 7899999999999999999999877   6777766544443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.23  E-value=5e-07  Score=72.12  Aligned_cols=45  Identities=18%  Similarity=0.347  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723            6 KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus         6 k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .+.+.+.+..++      .++.+..+++++|+||||||||||+++|++.+.
T Consensus        19 ~~~~~~~~~~~~------~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           19 QNRALLTIRVFV------HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             HHHHHHHHHHHH------HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH------HhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344445444443      333444456699999999999999999999885

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.22  E-value=3.6e-07  Score=86.58  Aligned_cols=58  Identities=26%  Similarity=0.363  Sum_probs=48.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.|+||+|||||||+++|++.+.+.   .|.|.+.+.++..+++.-+|
T Consensus       357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~  416 (582)
T 3b60_A          357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLR  416 (582)
T ss_dssp             CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHH
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHH
Confidence            4677888888888  8899999999999999999999888   78888877777777765554

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.22  E-value=2.3e-07  Score=87.85  Aligned_cols=58  Identities=21%  Similarity=0.351  Sum_probs=49.7

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.|+||+|+|||||+++|++.+.+.   .|-|.+.+.++..+++.-+|
T Consensus       355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r  414 (578)
T 4a82_A          355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLR  414 (578)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHH
T ss_pred             cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHh
Confidence            3677888888888  8899999999999999999999988   78888888888888776655

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.21  E-value=2.3e-07  Score=88.29  Aligned_cols=58  Identities=26%  Similarity=0.411  Sum_probs=49.8

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..++++++.+++|  +.|+||+|+|||||+++|++.+.+.   .|-|.+.+.++..+++.-+|
T Consensus       369 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r  428 (598)
T 3qf4_B          369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLR  428 (598)
T ss_dssp             CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHH
T ss_pred             ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHH
Confidence            3677788888888  8899999999999999999999888   78888888888888876665

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.18  E-value=3.2e-07  Score=87.14  Aligned_cols=58  Identities=17%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.|+||+|||||||+++|++.+.+.   .|.|.+.+.++..++..-+|
T Consensus       357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r  416 (587)
T 3qf4_A          357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLR  416 (587)
T ss_dssp             CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHH
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHH
Confidence            3677788888888  8899999999999999999999988   88888888888888876655

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.17  E-value=1.9e-06  Score=75.29  Aligned_cols=65  Identities=15%  Similarity=0.302  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723            6 KEEIKKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus         6 k~~i~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      ++.+.+.+...+........+++...+|  ++|+||+|+||||+++.||+.+.+.   .+-+.+.+.+..
T Consensus        73 ~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~  139 (302)
T 3b9q_A           73 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTF  139 (302)
T ss_dssp             HHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCS
T ss_pred             HHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeeccc
Confidence            3344444444443322123456666666  8899999999999999999998755   344444444433

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.16  E-value=1.5e-06  Score=67.17  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=23.0

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ..+++|+||||||||+++++|+....
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhCC
Confidence            35599999999999999999998765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.15  E-value=4.6e-06  Score=70.50  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ..+++|+||||||||+++++|+..+.
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            35699999999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.13  E-value=5.7e-07  Score=75.44  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=37.6

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      ..++.++++.+++|  +.|+||+|||||||+++|++.+.+.   .|.|.+
T Consensus        21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~   67 (229)
T 2pze_A           21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKH   67 (229)
T ss_dssp             CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEE
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEE
Confidence            34788889999888  8899999999999999999999876   444443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.10  E-value=5.1e-07  Score=76.21  Aligned_cols=39  Identities=21%  Similarity=0.245  Sum_probs=34.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ..++.++++.+.+|  +.|+||+|||||||+++|++.+.+.
T Consensus        18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~   58 (237)
T 2cbz_A           18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV   58 (237)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE
T ss_pred             CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            35788899999888  8899999999999999999998766

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.09  E-value=1.6e-06  Score=71.96  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=22.8

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..+++++|.+++|  +.|+||+|+|||||++.|++.+
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4578889999888  8899999999999999999987

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.06  E-value=7.5e-07  Score=75.93  Aligned_cols=45  Identities=18%  Similarity=0.242  Sum_probs=37.7

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEE
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIV   66 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi   66 (236)
                      ...++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.
T Consensus        17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~   63 (253)
T 2nq2_C           17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIE   63 (253)
T ss_dssp             TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEE
T ss_pred             CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEE
Confidence            345788899999888  8899999999999999999998876   45443

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.05  E-value=1.1e-05  Score=70.32  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=22.4

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..+++|+||||||||+++++|+...
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhC
Confidence            4559999999999999999999865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.04  E-value=5.4e-06  Score=74.22  Aligned_cols=34  Identities=21%  Similarity=0.458  Sum_probs=28.7

Q ss_pred             hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+++...+|  ++|+||+|+||||+++.||+.+.+.
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~  184 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE  184 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence            456666666  8899999999999999999998755

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.03  E-value=1.4e-06  Score=74.20  Aligned_cols=42  Identities=33%  Similarity=0.423  Sum_probs=35.4

Q ss_pred             hChhHHhhhCCCCCc---c--eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           18 EGKEYCAKIGKAWKR---G--YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        18 ~~~~~~~~~~~~~~r---g--~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ....+++++++.+.+   |  ++|+|||||||||+++.|+..+++.+
T Consensus        30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~   76 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTF   76 (250)
T ss_dssp             --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred             CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcE
Confidence            445688999988877   6  89999999999999999999998763

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.00  E-value=2.9e-06  Score=71.27  Aligned_cols=39  Identities=18%  Similarity=0.073  Sum_probs=24.6

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ...++.+++|.+++|  +.|.||+||||||+++.|++.++.
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~   51 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ   51 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            345788999999888  778999999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.94  E-value=9e-06  Score=75.66  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=29.7

Q ss_pred             hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++++.+.+|  ++|+||+||||||+++.|++.+...
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~  320 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ  320 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence            4566777777  7899999999999999999998655

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.93  E-value=5.6e-06  Score=65.16  Aligned_cols=27  Identities=44%  Similarity=0.662  Sum_probs=24.0

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ..++|+|||||||||+++.|+..+++.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~~~   31 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLNME   31 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            348999999999999999999998754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.93  E-value=1.4e-06  Score=75.86  Aligned_cols=39  Identities=21%  Similarity=0.333  Sum_probs=34.4

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ..++.++++.+.+|  +.|+||+|||||||+++|++.+.+.
T Consensus        51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~   91 (290)
T 2bbs_A           51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS   91 (290)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE
T ss_pred             ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            34688888888888  8899999999999999999998766

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.91  E-value=4.2e-06  Score=73.37  Aligned_cols=36  Identities=28%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..+++++++.+++|  +.|+||||||||||+++|++.+
T Consensus       113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            34688888888888  8899999999999999999998

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.90  E-value=2.4e-05  Score=69.15  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=28.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDK   74 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~   74 (236)
                      ++|+||||+||||+++.|++.+.+.   .+-+.+.+.+...
T Consensus       132 i~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r  169 (328)
T 3e70_C          132 IMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFR  169 (328)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccc
Confidence            8899999999999999999998765   3444444444443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.89  E-value=1.6e-06  Score=89.32  Aligned_cols=61  Identities=26%  Similarity=0.424  Sum_probs=54.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRM   85 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~   85 (236)
                      .+++++++.+++|  +.|+||+|||||||+++|.+...+.   .|.|.+.+.++..++..-+|. ++
T Consensus      1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~-~i 1155 (1321)
T 4f4c_A         1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRS-QI 1155 (1321)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHT-TE
T ss_pred             ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHh-he
Confidence            3688888888888  8999999999999999999999988   888999999999999887773 44

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.89  E-value=2.4e-06  Score=87.88  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=51.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.|+||+|||||||+++|++...+.   .|-|.+.+.++..+++.-+|
T Consensus       404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r  463 (1284)
T 3g5u_A          404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLR  463 (1284)
T ss_dssp             CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHH
T ss_pred             cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHH
Confidence            3678888888888  8899999999999999999999988   88888888888888887766

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.88  E-value=3.1e-06  Score=87.21  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=52.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++++.+++|  +.|+||+|||||||++.|.++..+.   .|.|.+.+.++..++..-+|
T Consensus       432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr  491 (1321)
T 4f4c_A          432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLR  491 (1321)
T ss_dssp             CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHH
T ss_pred             ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHh
Confidence            4678888888888  8899999999999999999999988   89999999899999987776

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.87  E-value=0.0002  Score=77.99  Aligned_cols=73  Identities=21%  Similarity=0.257  Sum_probs=58.9

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------   59 (236)
                      ...|.++.||+|||||+++++||+.++..+                                                  
T Consensus       644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~  723 (2695)
T 4akg_A          644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQ  723 (2695)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHH
T ss_pred             hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHH
Confidence            356789999999999999999999999987                                                  


Q ss_pred             ---------------------cCceEEEEeec----CccccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723           60 ---------------------VGEKGIVFTTN----YVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS  105 (236)
Q Consensus        60 ---------------------~~~~~vi~ttN----~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~  105 (236)
                                           .....+++|.|    .-..||+++.+  || +.+.+.+|+.+....+.-.
T Consensus       724 i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~  791 (2695)
T 4akg_A          724 IQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMILQ  791 (2695)
T ss_dssp             HHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHHH
Confidence                                 11345677888    44579999988  77 7899999999887777543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.87  E-value=8.8e-06  Score=65.80  Aligned_cols=27  Identities=41%  Similarity=0.578  Sum_probs=24.3

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++++|+||||||||+++++|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            679999999999999999999988544

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.87  E-value=1.3e-05  Score=61.83  Aligned_cols=28  Identities=32%  Similarity=0.470  Sum_probs=24.1

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ...++|+||||||||+++++|+......
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~   51 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGRNA   51 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            3459999999999999999999987543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.86  E-value=7.6e-06  Score=65.68  Aligned_cols=33  Identities=30%  Similarity=0.474  Sum_probs=25.0

Q ss_pred             hCCCCCcc--eEEECCCCCChHHHHHHHHhh-cCCc
Q 048723           26 IGKAWKRG--YLLYGPPGTGKSTMIAAMANF-LNYD   58 (236)
Q Consensus        26 ~~~~~~rg--~lL~GPpGtGKTtlakaia~~-l~~~   58 (236)
                      +++.++++  ++|+|||||||||+++.|+.. ++.+
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~   38 (184)
T 1y63_A            3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQ   38 (184)
T ss_dssp             ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred             cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence            34555454  899999999999999999998 5544

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.86  E-value=1.8e-05  Score=72.57  Aligned_cols=48  Identities=23%  Similarity=0.316  Sum_probs=40.3

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ....++++ +++.+|  ++|+||+|||||||+++|++...++   .+.+.+.+.
T Consensus       144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~  193 (438)
T 2dpy_A          144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGE  193 (438)
T ss_dssp             SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESC
T ss_pred             CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEece
Confidence            34578899 999999  8899999999999999999999877   565555554

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.84  E-value=9.2e-06  Score=64.67  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=25.1

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+.++|+|||||||||+++.|+..++..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~   32 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI   32 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3458999999999999999999999877

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.84  E-value=9.2e-06  Score=65.57  Aligned_cols=23  Identities=26%  Similarity=0.726  Sum_probs=21.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.|+|||||||||+++.|++.+.
T Consensus        10 i~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A           10 FIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999863

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.83  E-value=9.6e-06  Score=64.07  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+|||||||||+++.|+..++..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l~~~   30 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVLPEP   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            48899999999999999999998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.83  E-value=1e-05  Score=64.67  Aligned_cols=23  Identities=52%  Similarity=0.726  Sum_probs=21.0

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      -++|+|||||||||+++.|++.+
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            38899999999999999999973

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.83  E-value=1.1e-05  Score=71.47  Aligned_cols=50  Identities=22%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      ..++.++++...+|  +.|+||||+|||||+++|++.+.+.   .+-+.+.++++
T Consensus        42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~   93 (337)
T 2qm8_A           42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDP   93 (337)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECG
T ss_pred             HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcC
Confidence            45678888888777  7899999999999999999987654   33333344444

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.82  E-value=5.7e-06  Score=65.83  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=21.5

Q ss_pred             hCCCCCcc--eEEECCCCCChHHHHHHH
Q 048723           26 IGKAWKRG--YLLYGPPGTGKSTMIAAM   51 (236)
Q Consensus        26 ~~~~~~rg--~lL~GPpGtGKTtlakai   51 (236)
                      +++.+++|  ++|+||||||||||++++
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence            45566667  889999999999999964

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.81  E-value=1e-05  Score=63.23  Aligned_cols=26  Identities=35%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ++|.|||||||||+++.|+..+++.+
T Consensus         4 i~l~G~~GsGKsT~~~~L~~~l~~~~   29 (173)
T 3kb2_A            4 IILEGPDCCFKSTVAAKLSKELKYPI   29 (173)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCee
Confidence            78999999999999999999988763

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.80  E-value=1.2e-05  Score=64.15  Aligned_cols=28  Identities=32%  Similarity=0.401  Sum_probs=24.3

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.-++|+|||||||||+++.|+..++..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~   32 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLRLP   32 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            3448899999999999999999988655

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.79  E-value=1.1e-05  Score=65.49  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=21.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|+|||||||||+++.|++.++
T Consensus        32 i~l~G~~GsGKSTl~~~L~~~~g   54 (200)
T 4eun_A           32 VVVMGVSGSGKTTIAHGVADETG   54 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhhC
Confidence            88999999999999999999874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.78  E-value=7.9e-06  Score=72.98  Aligned_cols=44  Identities=23%  Similarity=0.449  Sum_probs=35.6

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT   68 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t   68 (236)
                      ++..+++.+++|  ++|+||+|||||||+++|++.+.+.   .+.+.+.
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie  209 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIE  209 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEE
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEEC
Confidence            346667766666  8899999999999999999999876   5666554

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.77  E-value=1.1e-05  Score=68.90  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=29.3

Q ss_pred             hHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723           21 EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        21 ~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      .++.++++....-++|+||+||||||++++|++.+.+
T Consensus        15 ~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            4677777333333889999999999999999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.77  E-value=7.4e-06  Score=66.53  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=21.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.|+|||||||||++++|++.+.
T Consensus        28 i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           28 IWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999986

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.76  E-value=1.3e-05  Score=63.49  Aligned_cols=26  Identities=35%  Similarity=0.442  Sum_probs=23.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++|+|||||||||+++.|+..++.+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~   31 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLV   31 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            38899999999999999999998766

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.75  E-value=2.5e-05  Score=69.53  Aligned_cols=47  Identities=19%  Similarity=0.225  Sum_probs=38.9

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      ....++.+ +++.+|  +.|+||||+|||||+++|++...++   .+.+.+.+
T Consensus        58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G  106 (347)
T 2obl_A           58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIG  106 (347)
T ss_dssp             SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEES
T ss_pred             CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEec
Confidence            44678888 999999  8899999999999999999999877   45454444

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.73  E-value=1.5e-05  Score=64.24  Aligned_cols=25  Identities=28%  Similarity=0.594  Sum_probs=22.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+||||||||||++.|++.++..
T Consensus         3 i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            7899999999999999999998643

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.73  E-value=8.8e-06  Score=67.52  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=19.2

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHH-hhc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMA-NFL   55 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia-~~l   55 (236)
                      ....+++.+.+|  +.|+||+||||||+++.|+ +.+
T Consensus        16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            445677888777  7899999999999999999 876

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.72  E-value=2e-05  Score=62.23  Aligned_cols=24  Identities=38%  Similarity=0.650  Sum_probs=21.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++|+|||||||||+++.|++.++.
T Consensus        11 i~l~G~~GsGKSTl~~~l~~~~g~   34 (175)
T 1knq_A           11 YVLMGVSGSGKSAVASEVAHQLHA   34 (175)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCCCHHHHHHHHHHhhCc
Confidence            889999999999999999998743

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.72  E-value=1.8e-05  Score=64.58  Aligned_cols=28  Identities=29%  Similarity=0.473  Sum_probs=22.9

Q ss_pred             CCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           29 AWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        29 ~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .+.+|  +.|+||||||||||+++|++.+.
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            44555  88999999999999999999984

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.70  E-value=2.3e-05  Score=62.19  Aligned_cols=29  Identities=31%  Similarity=0.426  Sum_probs=25.3

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .+.++|+|||||||||+++.|+..++..+
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~   39 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSGLKY   39 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence            34589999999999999999999887664

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.70  E-value=5.9e-05  Score=66.44  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=22.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +.|.||+||||||++++|+..+..
T Consensus        95 igI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           95 IGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcc
Confidence            778999999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.70  E-value=4.1e-05  Score=62.49  Aligned_cols=24  Identities=42%  Similarity=0.600  Sum_probs=22.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +.|+||||||||||+++|++.+..
T Consensus        25 v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           25 VALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            889999999999999999999863

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.69  E-value=5.3e-05  Score=65.45  Aligned_cols=24  Identities=33%  Similarity=0.625  Sum_probs=21.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      -++|+|||||||||+++.|+..++
T Consensus        35 livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           35 AFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            388999999999999999998763

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.69  E-value=1.3e-05  Score=70.79  Aligned_cols=45  Identities=24%  Similarity=0.414  Sum_probs=35.7

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      ++..+++.+..|  ++|+||+|||||||+++|++.+.+.   .+.+.+..
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~  206 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIED  206 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEES
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECC
Confidence            566666666555  8999999999999999999999876   56655543

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.68  E-value=6.7e-05  Score=65.32  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=23.3

Q ss_pred             Ccc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           31 KRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        31 ~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .+|  +.|+||+||||||++++|++.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            445  78999999999999999999887

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.67  E-value=2.6e-05  Score=64.92  Aligned_cols=40  Identities=28%  Similarity=0.396  Sum_probs=28.9

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCC-cccCceEEEEeecC
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNY-DLVGEKGIVFTTNY   71 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~-~~~~~~~vi~ttN~   71 (236)
                      ...-++|+||||+|||||+++|++.+.+ .+  .+.+.++|..
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~--~g~v~~ttr~   55 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDT--QVSVSHTTRQ   55 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTE--EECCCEECSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCce--EEEEEecCCC
Confidence            3334889999999999999999999864 23  2334445543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.66  E-value=2.6e-05  Score=62.00  Aligned_cols=26  Identities=38%  Similarity=0.511  Sum_probs=24.0

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++|+|+|||||||+++.|+..++.+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~   29 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVG   29 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            38899999999999999999998876

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.65  E-value=1.8e-05  Score=62.92  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=27.8

Q ss_pred             hhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCC
Q 048723           24 AKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        24 ~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      .++.+.+.+| .+|+||+||||||++++|...+..
T Consensus        18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             ccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4555666666 678999999999999999988754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.65  E-value=3.2e-05  Score=67.50  Aligned_cols=26  Identities=50%  Similarity=0.788  Sum_probs=23.9

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++++|+||||||||+|+.+|++.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            56799999999999999999999876

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.65  E-value=2.1e-05  Score=67.57  Aligned_cols=38  Identities=18%  Similarity=0.123  Sum_probs=32.0

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ..+.++.+.+++|  ++|+||||+|||||++.|+..+.+.
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            4577777777777  8899999999999999999987544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.65  E-value=2.5e-05  Score=60.70  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.| ..++..
T Consensus         4 I~l~G~~GsGKsT~a~~L-~~~g~~   27 (179)
T 3lw7_A            4 ILITGMPGSGKSEFAKLL-KERGAK   27 (179)
T ss_dssp             EEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred             EEEECCCCCCHHHHHHHH-HHCCCc
Confidence            789999999999999999 766655

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.65  E-value=3.8e-05  Score=62.75  Aligned_cols=28  Identities=18%  Similarity=0.370  Sum_probs=23.5

Q ss_pred             CCcc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           30 WKRG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +++|  ++|+||||||||||+++|++.+..
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3444  899999999999999999996544

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.64  E-value=2.5e-05  Score=62.09  Aligned_cols=25  Identities=36%  Similarity=0.748  Sum_probs=22.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.|+..++..
T Consensus         7 I~l~G~~GsGKST~~~~La~~l~~~   31 (186)
T 3cm0_A            7 VIFLGPPGAGKGTQASRLAQELGFK   31 (186)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCe
Confidence            8899999999999999999987655

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.64  E-value=1.9e-05  Score=61.64  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=24.6

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ....++|+||||+|||||+++|++.+...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~   63 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA   63 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            34459999999999999999999988543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.64  E-value=2.8e-05  Score=62.68  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      -++|+|||||||||+++.|++.+.+
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~~~   32 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDPST   32 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCC
Confidence            3889999999999999999998733

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.63  E-value=2.7e-05  Score=63.02  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+|||||||||+++.|+..++..
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~lg~~   45 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEACGYP   45 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCE
Confidence            48999999999999999999988655

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.63  E-value=2.8e-05  Score=63.32  Aligned_cols=26  Identities=35%  Similarity=0.548  Sum_probs=22.6

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++-+.|+||||+|||||++.|++.+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            34489999999999999999999874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.63  E-value=1.7e-05  Score=74.07  Aligned_cols=50  Identities=26%  Similarity=0.365  Sum_probs=38.8

Q ss_pred             ChhHHhhhCC-CCCcc--eEEECCCCCChHHHHHH--HHhhcCCcccCceEEEEeecC
Q 048723           19 GKEYCAKIGK-AWKRG--YLLYGPPGTGKSTMIAA--MANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        19 ~~~~~~~~~~-~~~rg--~lL~GPpGtGKTtlaka--ia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ....++++++ .+++|  ++|+||||||||||+++  +++...+.   .+.++++...
T Consensus        24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~   78 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEE   78 (525)
T ss_dssp             CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSS
T ss_pred             CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeC
Confidence            3457888998 88888  88999999999999999  66776544   5566666544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.62  E-value=2.5e-05  Score=80.35  Aligned_cols=61  Identities=20%  Similarity=0.371  Sum_probs=52.5

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMD   86 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d   86 (236)
                      +++++++.+++|  +.|+||+|||||||+++|++...+.   .|-|.+.+.++..+++.-+|. ++.
T Consensus      1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~-~i~ 1110 (1284)
T 3g5u_A         1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRA-QLG 1110 (1284)
T ss_dssp             SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTT-SCE
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHh-ceE
Confidence            688889988888  8899999999999999999999888   888888888888888776663 443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.61  E-value=3.3e-05  Score=60.61  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|+|||||||+++.|+..++.+
T Consensus        10 i~l~G~~GsGKSTva~~La~~lg~~   34 (168)
T 1zuh_A           10 LVLIGFMGSGKSSLAQELGLALKLE   34 (168)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC
Confidence            8899999999999999999999877

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.60  E-value=4e-05  Score=61.25  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=22.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      -++|+||||+|||||++.|++.+..
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~~   31 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHPD   31 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCc
Confidence            3889999999999999999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.60  E-value=5.7e-05  Score=68.87  Aligned_cols=36  Identities=33%  Similarity=0.429  Sum_probs=28.6

Q ss_pred             HHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           22 YCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        22 ~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+.++ +..+.+ ++|+||+||||||++++|++.++..
T Consensus       158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l~~~  194 (418)
T 1p9r_A          158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELNSS  194 (418)
T ss_dssp             HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence            45555 333444 7899999999999999999999876

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.60  E-value=3.9e-05  Score=62.56  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             CCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           30 WKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        30 ~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +++|  ++|+||||+|||||++.|+..+.
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4444  88999999999999999997764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.60  E-value=3.1e-05  Score=63.52  Aligned_cols=27  Identities=41%  Similarity=0.635  Sum_probs=24.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      -+.|+|||||||||+++.|++.++.++
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~   33 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEALQWHL   33 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            488999999999999999999887663

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.60  E-value=6.2e-05  Score=63.49  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ..++|+|||||||||+++.|+..++
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3488999999999999999999876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.59  E-value=7.4e-05  Score=65.35  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHhhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723            5 KKEEIKKDLKKFSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus         5 ~k~~i~~~v~~~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++.+.+.+...+....   .+++...++  ++|+||||+||||++..||..+...
T Consensus        79 ~~~~~~~~l~~~l~~~~---~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~  131 (306)
T 1vma_A           79 ALESLKEIILEILNFDT---KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE  131 (306)
T ss_dssp             HHHHHHHHHHHHTCSCC---CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCC---CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence            34444555554443321   233333333  8899999999999999999998644

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.59  E-value=3.4e-05  Score=60.46  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=23.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+|+|||||||+++.|+..++.+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~   29 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALGYE   29 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            38899999999999999999988765

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.58  E-value=3.5e-05  Score=65.24  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=23.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.||..++..
T Consensus         4 i~I~G~~GSGKSTla~~La~~~~~~   28 (253)
T 2ze6_A            4 HLIYGPTCSGKTDMAIQIAQETGWP   28 (253)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhcCCCe
Confidence            7899999999999999999988765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.58  E-value=2.9e-05  Score=61.05  Aligned_cols=21  Identities=38%  Similarity=0.455  Sum_probs=19.7

Q ss_pred             ceEEECCCCCChHHHHHHHHh
Q 048723           33 GYLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~   53 (236)
                      -++|+|||||||||+++.|+.
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            478999999999999999998

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.57  E-value=0.00015  Score=59.73  Aligned_cols=41  Identities=17%  Similarity=0.135  Sum_probs=28.0

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc----cCceEEEEeecC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL----VGEKGIVFTTNY   71 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~----~~~~~vi~ttN~   71 (236)
                      ..-++|+||||+|||||++.|+...-.+.    .+.+.+++.+..
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            33389999999999999999999532210    124555555543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.56  E-value=2.6e-05  Score=64.42  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=23.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCce
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEK   63 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~   63 (236)
                      +.|+||+|||||||+++|++. .+. .|.+
T Consensus        25 ~~liG~nGsGKSTLl~~l~Gl-~p~-~G~I   52 (208)
T 3b85_A           25 VFGLGPAGSGKTYLAMAKAVQ-ALQ-SKQV   52 (208)
T ss_dssp             EEEECCTTSSTTHHHHHHHHH-HHH-TTSC
T ss_pred             EEEECCCCCCHHHHHHHHhcC-CCc-CCee
Confidence            889999999999999999998 544 3444

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.56  E-value=4.1e-05  Score=60.78  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=23.7

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .-++|+|||||||||+++.|+..++..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~   33 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFGWV   33 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            348899999999999999999987654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.56  E-value=5e-05  Score=62.11  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=22.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++|+||||+||||+++.|+..+..
T Consensus        11 i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A           11 IVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             EEEECcCCCCHHHHHHHHHhhCCC
Confidence            889999999999999999998764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.56  E-value=3e-05  Score=61.58  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      -++|.|||||||||+++.|+..++
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            388999999999999999999876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.54  E-value=4.2e-05  Score=60.79  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=23.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+|+|||||||+++.|+..++..
T Consensus         5 ~I~l~G~~GsGKsT~a~~L~~~~~~~   30 (196)
T 1tev_A            5 VVFVLGGPGAGKGTQCARIVEKYGYT   30 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            38899999999999999999988654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.54  E-value=5.1e-05  Score=61.74  Aligned_cols=39  Identities=28%  Similarity=0.347  Sum_probs=28.2

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYV   72 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~   72 (236)
                      |.++|+||+|+|||||++.|.....-.+  ...+-.||..+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~--~~svs~TTR~p   40 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSF--GFSVSSTTRTP   40 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTE--EECCCEECSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCe--EEEEEEeccCC
Confidence            4589999999999999999988764332  23344666543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.54  E-value=4.5e-05  Score=60.98  Aligned_cols=21  Identities=43%  Similarity=0.741  Sum_probs=19.5

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|||||||||+++.|++.
T Consensus         5 i~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            5 YIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhcc
Confidence            789999999999999999974

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.54  E-value=4.6e-05  Score=61.60  Aligned_cols=25  Identities=44%  Similarity=0.697  Sum_probs=23.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.|+..++..
T Consensus        23 I~l~G~~GsGKST~a~~La~~l~~~   47 (201)
T 2cdn_A           23 VLLLGPPGAGKGTQAVKLAEKLGIP   47 (201)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            8899999999999999999988765

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.54  E-value=4.6e-05  Score=63.79  Aligned_cols=27  Identities=30%  Similarity=0.585  Sum_probs=23.1

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .-++|+|||||||||+++.|+..++..
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            348899999999999999999766554

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.53  E-value=3.9e-05  Score=61.28  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=23.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|.|||||||||+++.|+..++..
T Consensus        11 ~I~l~G~~GsGKsT~~~~La~~l~~~   36 (196)
T 2c95_A           11 IIFVVGGPGSGKGTQCEKIVQKYGYT   36 (196)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            48899999999999999999988755

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.52  E-value=5.1e-05  Score=61.93  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.|+..++..
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~~~   27 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKYGIP   27 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            7899999999999999999988765

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.52  E-value=0.00013  Score=59.14  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+||+||||||+++.|+..+...
T Consensus        25 i~i~G~~GsGKstl~~~l~~~~~~~   49 (201)
T 1rz3_A           25 LGIDGLSRSGKTTLANQLSQTLREQ   49 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhc
Confidence            7899999999999999999987543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.52  E-value=3.5e-05  Score=60.98  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|+|||||||+++.|+..++.+
T Consensus         8 I~l~G~~GsGKST~a~~La~~l~~~   32 (183)
T 2vli_A            8 IWINGPFGVGKTHTAHTLHERLPGS   32 (183)
T ss_dssp             EEEECCC----CHHHHHHHHHSTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCC
Confidence            7899999999999999999998766

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.51  E-value=4.9e-05  Score=61.59  Aligned_cols=24  Identities=29%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+|||||||||+++.|++ ++..
T Consensus         5 i~l~G~~GsGKST~~~~La~-lg~~   28 (206)
T 1jjv_A            5 VGLTGGIGSGKTTIANLFTD-LGVP   28 (206)
T ss_dssp             EEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCc
Confidence            78999999999999999998 5554

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.51  E-value=4.3e-05  Score=71.37  Aligned_cols=45  Identities=22%  Similarity=0.266  Sum_probs=33.3

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      +..+..+++.+..|  ++|+||+||||||++++|++.+.+.   .+++.+
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giiti  293 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSI  293 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEE
Confidence            44555555544444  8999999999999999999999766   454443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.51  E-value=5.5e-05  Score=59.04  Aligned_cols=25  Identities=32%  Similarity=0.292  Sum_probs=23.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|+|||||||+++.|+..++.+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~l~~~   27 (168)
T 2pt5_A            3 IYLIGFMCSGKSTVGSLLSRSLNIP   27 (168)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC
Confidence            7899999999999999999988766

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.51  E-value=3.9e-05  Score=62.36  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=21.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.|+||+||||||+++.|++.++
T Consensus         9 i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            9 IGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999999876

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.51  E-value=5.2e-05  Score=61.81  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.|+..++..
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~~~   27 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYEIP   27 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            7899999999999999999988765

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.50  E-value=2.3e-05  Score=63.82  Aligned_cols=23  Identities=43%  Similarity=0.826  Sum_probs=21.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|+||||+||||+++.|++.+.
T Consensus         4 i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            4 VFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCChHHHHHHHHHhhcc
Confidence            78999999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.50  E-value=6.9e-05  Score=60.88  Aligned_cols=29  Identities=28%  Similarity=0.418  Sum_probs=24.2

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +..++-++|+|||||||||+++.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            33444589999999999999999999874

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.49  E-value=5.2e-05  Score=62.23  Aligned_cols=25  Identities=32%  Similarity=0.611  Sum_probs=23.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.|+..++..
T Consensus         7 I~l~G~~GsGKsT~a~~La~~l~~~   31 (220)
T 1aky_A            7 MVLIGPPGAGKGTQAPNLQERFHAA   31 (220)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCce
Confidence            8899999999999999999988755

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.49  E-value=0.00017  Score=79.32  Aligned_cols=43  Identities=9%  Similarity=0.079  Sum_probs=35.8

Q ss_pred             ceEEEEeecCc-----cccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYV-----DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~-----~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      +..+|+|.|++     ..++++++|  || ..+.+++|+.+....|+..++
T Consensus      1422 d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A         1422 KIQFVGACNPPTDAGRVQLTHRFLR--HA-PILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp             SEEEEEEECCTTSTTCCCCCHHHHT--TC-CEEECCCCCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCCCCccCCHHHHh--hc-eEEEeCCCCHHHHHHHHHHHH
Confidence            56788898987     358999999  88 679999999999999977654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.49  E-value=6.3e-05  Score=66.88  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=30.0

Q ss_pred             HhhhCCCCCc--c--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           23 CAKIGKAWKR--G--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        23 ~~~~~~~~~r--g--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ...+.+.+.+  +  +.|+||||||||||+++|++.+.++
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3446666666  5  8999999999999999999998776

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.49  E-value=5.4e-05  Score=60.66  Aligned_cols=25  Identities=36%  Similarity=0.689  Sum_probs=22.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|+|||||||+++.|+..++..
T Consensus         3 I~i~G~~GsGKsT~~~~L~~~l~~~   27 (205)
T 2jaq_A            3 IAIFGTVGAGKSTISAEISKKLGYE   27 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred             EEEECCCccCHHHHHHHHHHhcCCc
Confidence            7899999999999999999988754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.48  E-value=4.2e-05  Score=68.55  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=28.9

Q ss_pred             hHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723           21 EYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        21 ~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ..+.++.+....-++|+||+||||||++++|++.+.+
T Consensus       126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            3556665444444899999999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.48  E-value=7.6e-05  Score=65.17  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      ++|+||+||||||+++.|++.+.+.   .+-+.+.+.+..
T Consensus       105 i~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~  141 (304)
T 1rj9_A          105 VLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTF  141 (304)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCS
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCC
Confidence            8899999999999999999999776   444444444433

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.48  E-value=4.9e-05  Score=60.82  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=23.8

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .-++|+|||||||||+++.|+..++..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~   39 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYGFT   39 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            348899999999999999999988754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.47  E-value=3.2e-05  Score=71.75  Aligned_cols=37  Identities=27%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             HHhhhCCCCCc-ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           22 YCAKIGKAWKR-GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        22 ~~~~~~~~~~r-g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+.++++.+++ -+.|+||+|||||||+++|++.+.+.
T Consensus        19 ~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~   56 (483)
T 3euj_A           19 GFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPD   56 (483)
T ss_dssp             TEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             cccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            45566666555 58899999999999999999998766

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.46  E-value=0.00011  Score=59.49  Aligned_cols=38  Identities=29%  Similarity=0.260  Sum_probs=26.9

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      +....-++|+||||+|||||+..|+. .    .+..++++++.
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~   54 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTE   54 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESS
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECC
Confidence            33333389999999999999999998 1    23455555543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.46  E-value=5.6e-05  Score=61.09  Aligned_cols=24  Identities=33%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+|||||||||+++.|++ ++..
T Consensus         4 i~i~G~~GsGKSTl~~~L~~-~g~~   27 (204)
T 2if2_A            4 IGLTGNIGCGKSTVAQMFRE-LGAY   27 (204)
T ss_dssp             EEEEECTTSSHHHHHHHHHH-TTCE
T ss_pred             EEEECCCCcCHHHHHHHHHH-CCCE
Confidence            78999999999999999999 6544

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.45  E-value=7.6e-05  Score=62.16  Aligned_cols=29  Identities=21%  Similarity=0.464  Sum_probs=24.8

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++-++|.|||||||+|.++.|+..++..
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~   56 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFN   56 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            34447889999999999999999998766

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.45  E-value=8e-05  Score=61.15  Aligned_cols=29  Identities=21%  Similarity=0.318  Sum_probs=23.1

Q ss_pred             CCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           28 KAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +++-+|  ++|+||+|+|||||++.|++...
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            444444  88999999999999999998865

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.45  E-value=4.3e-05  Score=60.61  Aligned_cols=24  Identities=38%  Similarity=0.635  Sum_probs=22.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++|.|||||||||+++.|+..++.
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            4 GIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999998763

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.44  E-value=6.8e-05  Score=61.62  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=23.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|.|||||||||+++.|+..++..
T Consensus         7 ~I~l~G~~GsGKsT~~~~La~~l~~~   32 (222)
T 1zak_A            7 KVMISGAPASGKGTQCELIKTKYQLA   32 (222)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            48899999999999999999988755

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.44  E-value=5.8e-05  Score=66.15  Aligned_cols=29  Identities=21%  Similarity=0.094  Sum_probs=24.9

Q ss_pred             CCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ..+|  +.|+||||||||||++.|++.+.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~  117 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW  117 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence            4555  7899999999999999999998653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.44  E-value=6e-05  Score=62.23  Aligned_cols=26  Identities=23%  Similarity=0.561  Sum_probs=23.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+|||||||||+++.|+..++..
T Consensus         9 ~I~l~G~~GsGKsT~a~~La~~l~~~   34 (227)
T 1zd8_A            9 RAVIMGAPGSGKGTVSSRITTHFELK   34 (227)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            48899999999999999999988755

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.42  E-value=0.00016  Score=63.55  Aligned_cols=35  Identities=37%  Similarity=0.452  Sum_probs=28.1

Q ss_pred             hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++++...++  ++|+||+|+||||++..||..+...
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~  132 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL  132 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            4566655554  8899999999999999999998654

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.42  E-value=7.4e-05  Score=61.62  Aligned_cols=26  Identities=31%  Similarity=0.557  Sum_probs=23.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ++|.|||||||+|.++.|+..++...
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~g~~~   28 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEKGFVH   28 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeE
Confidence            67899999999999999999988763

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.42  E-value=7.9e-05  Score=60.04  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=23.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|||||||||+++.|+..++..
T Consensus         7 I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            7 IAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            7899999999999999999998865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.41  E-value=7.8e-05  Score=62.94  Aligned_cols=26  Identities=42%  Similarity=0.694  Sum_probs=23.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +.|+||+||||||+++.|+..++..+
T Consensus        30 I~I~G~~GsGKSTl~k~La~~Lg~~~   55 (252)
T 4e22_A           30 ITVDGPSGAGKGTLCKALAESLNWRL   55 (252)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCc
Confidence            88999999999999999998887664

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.41  E-value=7e-05  Score=70.36  Aligned_cols=36  Identities=33%  Similarity=0.412  Sum_probs=30.7

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+.+++ .+.+|  +.|+||||||||||+++|++.+.++
T Consensus        37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~   74 (538)
T 1yqt_A           37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN   74 (538)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred             cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            466676 66777  8899999999999999999998766

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.41  E-value=2.9e-05  Score=71.63  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             hhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           24 AKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        24 ~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++++.+.+|  ++|+||+|||||||+++|++.+.+.
T Consensus       129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~  165 (460)
T 2npi_A          129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF  165 (460)
T ss_dssp             HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred             hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc
Confidence            3566666667  8999999999999999999987544

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.40  E-value=8.3e-05  Score=59.98  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.|+..++..
T Consensus        18 I~l~G~~GsGKsT~~~~L~~~~g~~   42 (203)
T 1ukz_A           18 IFVLGGPGAGKGTQCEKLVKDYSFV   42 (203)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCce
Confidence            7899999999999999999987654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.39  E-value=7.2e-05  Score=61.46  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=23.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|||||||||+++.|+..++..
T Consensus         8 I~l~G~~GsGKsT~a~~La~~l~~~   32 (217)
T 3be4_A            8 LILIGAPGSGKGTQCEFIKKEYGLA   32 (217)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCce
Confidence            8899999999999999999998765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.39  E-value=8.2e-05  Score=61.78  Aligned_cols=26  Identities=35%  Similarity=0.529  Sum_probs=23.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++|.|||||||||+++.|+..++..
T Consensus        18 ~I~l~G~~GsGKsT~a~~La~~l~~~   43 (233)
T 1ak2_A           18 RAVLLGPPGAGKGTQAPKLAKNFCVC   43 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            38899999999999999999998755

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=97.39  E-value=7.4e-05  Score=51.84  Aligned_cols=69  Identities=10%  Similarity=-0.078  Sum_probs=46.9

Q ss_pred             ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHccc----ccccChHHHHHHHHHHHHHHH
Q 048723           92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPK----SDEEDADSCLKNLIEALKVAK  160 (236)
Q Consensus        92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~----~~~~~~~~~~~~~~~~L~~~~  160 (236)
                      +.|+.+.|..||+.|+.........++..++. +.||||+||..+|..+    .......++.+++..+|.+..
T Consensus         1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~   74 (78)
T 3kw6_A            1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM   74 (78)
T ss_dssp             CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            57999999999999987654332334556665 7799999999887651    112233466666776666544

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.37  E-value=8.4e-05  Score=60.77  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=23.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|||||||||+++.|+..++..
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~g~~   27 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKYGIP   27 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCe
Confidence            7899999999999999999988765

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.37  E-value=7.6e-05  Score=66.62  Aligned_cols=28  Identities=54%  Similarity=0.883  Sum_probs=24.1

Q ss_pred             Ccc-eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRG-YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg-~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.| ++++||+||||||++++|++.++..
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            344 8899999999999999999998654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.36  E-value=8e-05  Score=63.87  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=22.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+||||+|||||+++|++...+.
T Consensus         5 v~lvG~nGaGKSTLln~L~g~~~~~   29 (270)
T 3sop_A            5 IMVVGQSGLGKSTLVNTLFKSQVSR   29 (270)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCC
Confidence            7899999999999999999998766

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.36  E-value=0.00012  Score=60.43  Aligned_cols=41  Identities=29%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      +....-++|+||||+||||++..++......  +...+++++.
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e   60 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALE   60 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence            3333338899999999999988777654322  2445555554

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.34  E-value=0.00011  Score=58.32  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|.|+|||||||+++.|+..+
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999987

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.32  E-value=0.00011  Score=60.75  Aligned_cols=25  Identities=28%  Similarity=0.521  Sum_probs=22.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|||||||||+++.|+..++..
T Consensus         3 I~l~G~~GsGKsT~a~~La~~lg~~   27 (223)
T 2xb4_A            3 ILIFGPNGSGKGTQGNLVKDKYSLA   27 (223)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCe
Confidence            7899999999999999999988644

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.32  E-value=0.00013  Score=57.80  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=21.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++||||||+++.|+..+
T Consensus         8 i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            8 VWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999987

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.31  E-value=0.00015  Score=57.85  Aligned_cols=25  Identities=36%  Similarity=0.674  Sum_probs=22.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|+|||||||+++.|+..+...
T Consensus        16 i~l~G~~GsGKsT~~~~L~~~l~~~   40 (186)
T 2yvu_A           16 VWLTGLPGSGKTTIATRLADLLQKE   40 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            7899999999999999999988644

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.30  E-value=0.00034  Score=62.45  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=21.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++|+||||||||||+..++..+..
T Consensus        64 ~~I~GppGsGKSTLal~la~~~~~   87 (356)
T 3hr8_A           64 VEIFGQESSGKTTLALHAIAEAQK   87 (356)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            889999999999999999988653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.29  E-value=0.0001  Score=69.30  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             HhhhCCCCC-cc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           23 CAKIGKAWK-RG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        23 ~~~~~~~~~-rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      |+-++++.+ +|  +.|+||||+|||||+++|++.+.++
T Consensus        14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~   52 (538)
T 3ozx_A           14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN   52 (538)
T ss_dssp             CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred             eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            455566665 44  8899999999999999999998776

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.29  E-value=0.00015  Score=60.91  Aligned_cols=27  Identities=30%  Similarity=0.530  Sum_probs=23.7

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .-++|+|||||||||+++.|+..++..
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~   56 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSHCYC   56 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            348899999999999999999987655

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.29  E-value=0.00016  Score=75.82  Aligned_cols=29  Identities=24%  Similarity=0.450  Sum_probs=24.7

Q ss_pred             CCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +++|  ++||||||||||+|+++++.+....
T Consensus      1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~ 1109 (1706)
T 3cmw_A         1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1109 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEcCCCCChHHHHHHHHHHhhhc
Confidence            4556  9999999999999999999877544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.28  E-value=0.00014  Score=58.47  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=24.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      -+.|.||+||||||+++.|+..++.++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~   30 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPY   30 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCce
Confidence            478999999999999999999988763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.28  E-value=4e-05  Score=76.55  Aligned_cols=45  Identities=22%  Similarity=0.242  Sum_probs=37.9

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFT   68 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~t   68 (236)
                      .++.++++.+.+|  +.|+||||+|||||+++|++.+.+.   .|-|.+.
T Consensus       687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~  733 (986)
T 2iw3_A          687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTH  733 (986)
T ss_dssp             CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEEC
T ss_pred             eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEc
Confidence            4678888888888  8899999999999999999998877   5555553

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.28  E-value=6.6e-05  Score=70.55  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=26.5

Q ss_pred             CCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           29 AWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        29 ~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+++|  +.|+||+|||||||+++|++.+.+.
T Consensus       290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~  321 (538)
T 3ozx_A          290 EAKEGEIIGILGPNGIGKTTFARILVGEITAD  321 (538)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             eECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            34566  8899999999999999999999877

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.27  E-value=0.00014  Score=60.37  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=23.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +.|+|||||||||+++.|+..++.++
T Consensus        19 i~i~G~~gsGKst~~~~l~~~lg~~~   44 (236)
T 1q3t_A           19 IAIDGPASSGKSTVAKIIAKDFGFTY   44 (236)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCce
Confidence            88999999999999999999887663

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.27  E-value=0.00026  Score=62.85  Aligned_cols=30  Identities=20%  Similarity=0.412  Sum_probs=25.6

Q ss_pred             CCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           27 GKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        27 ~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +..+++|  +.|+||||||||||++.|+....
T Consensus       125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~  156 (349)
T 1pzn_A          125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ  156 (349)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4555666  88999999999999999999874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.27  E-value=0.00013  Score=61.31  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=24.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      -+.|.|||||||||+++.|+..++..+
T Consensus        11 ~i~i~G~~GsGKsTla~~la~~lg~~~   37 (233)
T 3r20_A           11 VVAVDGPAGTGKSSVSRGLARALGARY   37 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            388999999999999999999987664

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.27  E-value=0.00012  Score=59.22  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=22.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|+|||||||+++.|+..++..
T Consensus        13 I~l~G~~GsGKST~~~~L~~~l~~~   37 (212)
T 2wwf_A           13 IVFEGLDRSGKSTQSKLLVEYLKNN   37 (212)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            8899999999999999999987644

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.25  E-value=7.1e-05  Score=66.86  Aligned_cols=27  Identities=33%  Similarity=0.629  Sum_probs=24.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .++|+||||+||||++++|+..++.+|
T Consensus        26 ~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           26 CVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            489999999999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.23  E-value=8.3e-05  Score=69.85  Aligned_cols=31  Identities=29%  Similarity=0.470  Sum_probs=26.5

Q ss_pred             CCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           28 KAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.+.+|  +.|+||+|||||||+++|++.+.+.
T Consensus       307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~  339 (538)
T 1yqt_A          307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT  339 (538)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            334566  8899999999999999999998766

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.22  E-value=0.00013  Score=69.61  Aligned_cols=36  Identities=31%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+.+++ .+.+|  +.|+||||+|||||+++|++.+.++
T Consensus       107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~  144 (607)
T 3bk7_A          107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN  144 (607)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred             eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence            466666 66777  8899999999999999999998766

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.22  E-value=0.00019  Score=59.91  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=23.2

Q ss_pred             cc--eEEECCCCCChHHHHHHHHhhcCC
Q 048723           32 RG--YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        32 rg--~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +|  ++|.|||||||||+++.|+..++.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            55  778999999999999999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.21  E-value=3.1e-05  Score=64.99  Aligned_cols=25  Identities=44%  Similarity=0.456  Sum_probs=23.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+||+|||||||+++|+..+.+.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~~~   54 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALIPD   54 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhcccccC
Confidence            6789999999999999999999766

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.21  E-value=0.00017  Score=58.41  Aligned_cols=27  Identities=19%  Similarity=0.274  Sum_probs=22.8

Q ss_pred             CCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723           29 AWKRG--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        29 ~~~rg--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++++  +.|+|||||||||+++.|++.+
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            34444  7799999999999999999976

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.21  E-value=0.0002  Score=60.65  Aligned_cols=22  Identities=45%  Similarity=0.717  Sum_probs=20.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|+|||||||+++.|+..+
T Consensus         7 Ivl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            7 IILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999873

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.20  E-value=0.00044  Score=60.04  Aligned_cols=24  Identities=33%  Similarity=0.613  Sum_probs=22.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++|+||+|+||||++..||..+..
T Consensus       108 i~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          108 IVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            889999999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.20  E-value=0.00014  Score=58.74  Aligned_cols=26  Identities=27%  Similarity=0.176  Sum_probs=22.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|.|+|||||||+++.|+..++..
T Consensus        11 ~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A           11 LIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            38899999999999999999987543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.19  E-value=0.00056  Score=60.75  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=26.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ++|+||||+|||||+..++......  +..++++++.
T Consensus        64 v~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E   98 (349)
T 2zr9_A           64 IEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAE   98 (349)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence            8899999999999999998765433  2444555554

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.19  E-value=0.00024  Score=57.00  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|.|||||||||+++.|+..+
T Consensus         7 I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            7 IVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             EEEECCTTSSHHHHHHHHHHTS
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999987

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.19  E-value=9.4e-05  Score=70.49  Aligned_cols=31  Identities=26%  Similarity=0.464  Sum_probs=26.6

Q ss_pred             CCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           28 KAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.+.+|  +.|+||||+|||||+++|++.+.+.
T Consensus       377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~  409 (607)
T 3bk7_A          377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT  409 (607)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            334566  8899999999999999999998766

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.18  E-value=0.00011  Score=67.23  Aligned_cols=33  Identities=30%  Similarity=0.407  Sum_probs=28.2

Q ss_pred             HhhhCCCCCcc----eEEECCCCCChHHHHHHHHhhc
Q 048723           23 CAKIGKAWKRG----YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        23 ~~~~~~~~~rg----~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.++++.+++|    ++|+||||+|||||+++|++..
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            77888888888    5689999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.00011  Score=69.96  Aligned_cols=36  Identities=31%  Similarity=0.435  Sum_probs=30.8

Q ss_pred             HhhhCCCCCcc-------eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           23 CAKIGKAWKRG-------YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        23 ~~~~~~~~~rg-------~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.++++.+.+|       +.|+||+|+|||||+++|++.+.+.
T Consensus       363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~  405 (608)
T 3j16_B          363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD  405 (608)
T ss_dssp             CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred             cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            45566777777       7899999999999999999998776

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.15  E-value=7.1e-05  Score=74.80  Aligned_cols=34  Identities=44%  Similarity=0.596  Sum_probs=29.8

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~   53 (236)
                      ..++.+++|.+.+|  +.|+||||+|||||+++|++
T Consensus       448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34677788888888  88999999999999999995

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.15  E-value=0.00023  Score=56.96  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=21.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+|++||||||+++.|+.. +..
T Consensus        11 I~i~G~~GsGKST~~~~La~~-g~~   34 (203)
T 1uf9_A           11 IGITGNIGSGKSTVAALLRSW-GYP   34 (203)
T ss_dssp             EEEEECTTSCHHHHHHHHHHT-TCC
T ss_pred             EEEECCCCCCHHHHHHHHHHC-CCE
Confidence            789999999999999999997 544

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.13  E-value=0.00024  Score=57.98  Aligned_cols=25  Identities=40%  Similarity=0.472  Sum_probs=21.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|.|++||||||+++.|+. ++..
T Consensus         6 ~I~i~G~~GSGKST~~~~L~~-lg~~   30 (218)
T 1vht_A            6 IVALTGGIGSGKSTVANAFAD-LGIN   30 (218)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHH-cCCE
Confidence            378999999999999999998 5544

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.12  E-value=0.00059  Score=61.89  Aligned_cols=26  Identities=35%  Similarity=0.393  Sum_probs=23.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ++|+|||||||||+++.|+..+++.+
T Consensus       261 Iil~G~pGSGKSTla~~L~~~~~~~~  286 (416)
T 3zvl_A          261 VVAVGFPGAGKSTFIQEHLVSAGYVH  286 (416)
T ss_dssp             EEEESCTTSSHHHHHHHHTGGGTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCcEE
Confidence            78899999999999999999887654

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=97.11  E-value=0.00035  Score=66.77  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=22.9

Q ss_pred             eEEECCCCCChHHH-HHHHHhhcCCcccCceEEEEeecC
Q 048723           34 YLLYGPPGTGKSTM-IAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        34 ~lL~GPpGtGKTtl-akaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      .|+.||||||||++ +..|...+...  ..+++.+.||.
T Consensus       208 ~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~a~TN~  244 (646)
T 4b3f_X          208 AIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCCAPSNI  244 (646)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSHH
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEcCchH
Confidence            68899999999964 44444444333  24555555553

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.09  E-value=0.0015  Score=72.10  Aligned_cols=75  Identities=24%  Similarity=0.283  Sum_probs=59.3

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc---------------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL---------------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~---------------------------------------------------   59 (236)
                      ..|.++.||+|||||.+++.||+.+++.+                                                   
T Consensus       604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I  683 (3245)
T 3vkg_A          604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTI  683 (3245)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999887                                                   


Q ss_pred             -------------c-C-------ceEEEEeec----CccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 -------------V-G-------EKGIVFTTN----YVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 -------------~-~-------~~~vi~ttN----~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                   . |       ...|++|.|    .-..||.++..  || +.|.+.+|+.+....+.-.-.+
T Consensus       684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~s~G  754 (3245)
T 3vkg_A          684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVMLYSQG  754 (3245)
T ss_dssp             HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHHHTTT
T ss_pred             HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHHHHcc
Confidence                         1 2       345677777    34579999988  78 7799999999887777554433

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.08  E-value=0.00075  Score=58.43  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=26.6

Q ss_pred             hhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           24 AKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        24 ~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .++++..+.-++|+||+|+||||++..||..+...
T Consensus        91 ~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~  125 (295)
T 1ls1_A           91 RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (295)
T ss_dssp             CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred             ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            34555522237789999999999999999998644

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.08  E-value=0.00028  Score=57.43  Aligned_cols=25  Identities=32%  Similarity=0.308  Sum_probs=22.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+|++||||||+++.|+..++.+
T Consensus        15 IgltG~~GSGKSTva~~L~~~lg~~   39 (192)
T 2grj_A           15 IGVTGKIGTGKSTVCEILKNKYGAH   39 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCE
Confidence            7889999999999999999987766

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.08  E-value=0.00031  Score=57.24  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=22.4

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .-++|+|+|||||||+++.|+..++
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3388999999999999999999886

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.08  E-value=0.00021  Score=60.93  Aligned_cols=29  Identities=24%  Similarity=0.224  Sum_probs=23.4

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      |+....-++|+||||||||||+..|+..+
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            44433348999999999999999999865

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.08  E-value=0.00089  Score=61.10  Aligned_cols=50  Identities=22%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723            7 EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus         7 ~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.+.+.+...+....  .++++..+..++|+||+|+||||++..||..+...
T Consensus        76 ~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~  125 (425)
T 2ffh_A           76 ATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (425)
T ss_dssp             HHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            334444444443321  34555522337889999999999999999998654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.06  E-value=0.00019  Score=55.85  Aligned_cols=28  Identities=36%  Similarity=0.590  Sum_probs=22.8

Q ss_pred             CCCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723           28 KAWKRG-YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        28 ~~~~rg-~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +....+ .+|+||+|+|||+++.+|.-.+
T Consensus        19 i~f~~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           19 VEFKEGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            344456 6889999999999999998655

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.06  E-value=0.00069  Score=61.99  Aligned_cols=38  Identities=21%  Similarity=0.178  Sum_probs=27.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      .++|.||||||||+++.+++..+.......+++++.||
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~   84 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTH   84 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcH
Confidence            48999999999999999999887433111345555554

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.05  E-value=0.00019  Score=63.29  Aligned_cols=27  Identities=15%  Similarity=0.263  Sum_probs=22.3

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhh
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++..+.++|+||||||||+|+..++..
T Consensus       120 i~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          120 RYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            333344799999999999999999987

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.05  E-value=0.00011  Score=58.72  Aligned_cols=44  Identities=18%  Similarity=0.132  Sum_probs=26.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      .+.|+||+|||||||++.|++.+.+.-...+.|.+...++..++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~   47 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEID   47 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCC
Confidence            37899999999999999999998644111355555544434443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.00033  Score=66.73  Aligned_cols=29  Identities=31%  Similarity=0.343  Sum_probs=25.8

Q ss_pred             CCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.+|  +.|+||||+|||||+++|++.+.++
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~  130 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPN  130 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence            4456  8899999999999999999998776

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.04  E-value=0.00032  Score=58.91  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=23.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|.|||||||||+++.|+..++.+
T Consensus        25 I~I~G~~GSGKST~a~~L~~~lg~~   49 (252)
T 1uj2_A           25 IGVSGGTASGKSSVCAKIVQLLGQN   49 (252)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhhh
Confidence            7899999999999999999988865

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.01  E-value=6e-05  Score=67.71  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=32.5

Q ss_pred             ChhHHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCC
Q 048723           19 GKEYCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +...|+++++.+.+| ++|+||||+|||||+++|...++.
T Consensus        47 nf~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~   86 (415)
T 4aby_A           47 NLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGG   86 (415)
T ss_dssp             EETTEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred             cccceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence            344677778888887 779999999999999999888864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.01  E-value=0.00033  Score=61.70  Aligned_cols=27  Identities=30%  Similarity=0.562  Sum_probs=23.6

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.++|+||+||||||+++.||..++..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~   32 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCE   32 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence            358899999999999999999988633

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.00  E-value=0.0012  Score=58.82  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=28.4

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ++..+-++|+||||+|||||+..++......  +...+++++.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E  100 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE  100 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            3333448899999999999999998775432  2345555553

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.00  E-value=0.0002  Score=63.93  Aligned_cols=33  Identities=27%  Similarity=0.535  Sum_probs=26.0

Q ss_pred             HhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723           23 CAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        23 ~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l   55 (236)
                      |+++.+.++.| .+|+||+|+|||||..+|+-.+
T Consensus        14 ~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           14 LKNVDIEFQSGITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccceEEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34455666667 6789999999999999998664

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.00  E-value=0.00078  Score=58.47  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=25.4

Q ss_pred             hCCCCC-cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           26 IGKAWK-RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        26 ~~~~~~-rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +++..+ .-++++||+|+||||++..||..+...
T Consensus        92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~  125 (297)
T 1j8m_F           92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKK  125 (297)
T ss_dssp             CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            444443 227789999999999999999988543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.99  E-value=0.00042  Score=59.99  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=22.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +.|.||+||||||+++.|+..+..
T Consensus        34 i~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           34 IFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhh
Confidence            789999999999999999999864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.97  E-value=0.00043  Score=56.36  Aligned_cols=26  Identities=35%  Similarity=0.416  Sum_probs=23.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -+.|+||+||||||+++.|+..++.+
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~g~~   30 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASELSMI   30 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence            38899999999999999999988766

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.96  E-value=0.00076  Score=61.72  Aligned_cols=25  Identities=32%  Similarity=0.526  Sum_probs=22.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+||||+||||++..||..+...
T Consensus       100 I~lvG~~GsGKTTt~~kLA~~l~~~  124 (433)
T 3kl4_A          100 IMLVGVQGSGKTTTAGKLAYFYKKR  124 (433)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            7889999999999999999888543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.93  E-value=0.0011  Score=58.56  Aligned_cols=42  Identities=19%  Similarity=0.112  Sum_probs=28.9

Q ss_pred             CCcc--eEEECCCCCChHHHHHHHHhhcCCcc----cCceEEEEeecC
Q 048723           30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYDL----VGEKGIVFTTNY   71 (236)
Q Consensus        30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~~----~~~~~vi~ttN~   71 (236)
                      +++|  ++|+||||+|||+|+..|+.....+.    .+...+++++..
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            3444  88999999999999999998743211    124555555543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.92  E-value=0.00045  Score=59.84  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=23.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      +.|+||||+|||||+++|++...+.   .+-+.+
T Consensus       172 v~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~  202 (301)
T 1u0l_A          172 STMAGLSGVGKSSLLNAINPGLKLR---VSEVSE  202 (301)
T ss_dssp             EEEECSTTSSHHHHHHHHSTTCCCC---------
T ss_pred             EEEECCCCCcHHHHHHHhccccccc---ccceec
Confidence            7899999999999999999998877   444444

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.90  E-value=0.00017  Score=58.29  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=22.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.||+||||||+++.|+..+...
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            6889999999999999999988644

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.89  E-value=0.00027  Score=63.11  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=27.7

Q ss_pred             HHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723           22 YCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        22 ~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .|.++++.+..| ++|+||||+||||++.+|...+
T Consensus        16 ~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           16 NLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             TCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceeeeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence            455666777777 6799999999999999999743

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.88  E-value=0.0012  Score=60.44  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=22.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+||||+||||++..||..+...
T Consensus       102 vIlivG~~G~GKTTt~~kLA~~l~~~  127 (443)
T 3dm5_A          102 ILLMVGIQGSGKTTTVAKLARYFQKR  127 (443)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEECcCCCCHHHHHHHHHHHHHHC
Confidence            38899999999999999999887544

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=96.87  E-value=0.00044  Score=49.08  Aligned_cols=49  Identities=12%  Similarity=-0.098  Sum_probs=36.7

Q ss_pred             ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      ..+.|+.+.|..|++.++.........++..+++ +.|||++||..+|..
T Consensus         7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~e   56 (86)
T 2krk_A            7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE   56 (86)
T ss_dssp             CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence            4578999999999999987544332233555665 779999999987775

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.87  E-value=0.00052  Score=58.70  Aligned_cols=23  Identities=35%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      -++|.|||||||||+++.|+..+
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999999853

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.86  E-value=0.00063  Score=59.97  Aligned_cols=36  Identities=28%  Similarity=0.332  Sum_probs=28.2

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++.++.+...++  +.|+||||+||||++..|++.+.
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3455566655555  78999999999999999998763

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.86  E-value=0.00092  Score=60.51  Aligned_cols=21  Identities=33%  Similarity=0.358  Sum_probs=18.4

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+||||||||||++.|+-.
T Consensus       181 ~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          181 TELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHH
Confidence            889999999999999977633

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.83  E-value=0.00028  Score=61.32  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=20.5

Q ss_pred             hhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhh
Q 048723           16 FSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      .+....++.++++.    ++|+||+|+|||||++.|++.
T Consensus         7 ~~~~~~~l~~~~~~----I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A            7 QVHRKSVKKGFEFT----LMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             -----------CEE----EEEEEETTSSHHHHHHHHHC-
T ss_pred             eECCEEEEcCCCEE----EEEECCCCCCHHHHHHHHhCC
Confidence            34445556665554    599999999999999999876

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.82  E-value=0.00023  Score=68.29  Aligned_cols=29  Identities=31%  Similarity=0.460  Sum_probs=25.9

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHH
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMI   48 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtla   48 (236)
                      ...+++++|.+++|  +.|+||||||||||+
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            34688899999998  889999999999997

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=96.81  E-value=0.0013  Score=62.59  Aligned_cols=38  Identities=32%  Similarity=0.397  Sum_probs=25.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      .+++.||||||||+++..+...+-..-...+++.+.||
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn  234 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN  234 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence            37889999999999887777665321012455555555

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.80  E-value=0.001  Score=54.73  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=23.3

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++++|.||+|+|||+++..|+....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            45589999999999999999998876

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.80  E-value=0.00084  Score=62.54  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=26.3

Q ss_pred             CCCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           27 GKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        27 ~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +..+.+|  ++|+||||||||||++.|++.....
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            3455556  8899999999999999999987654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.79  E-value=0.00027  Score=56.78  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=25.1

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .+.+  ++..++  ++|+||||+|||||+++|++..
T Consensus        17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4555  555555  8999999999999999998765

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.79  E-value=0.00044  Score=56.52  Aligned_cols=29  Identities=34%  Similarity=0.554  Sum_probs=23.4

Q ss_pred             CCCCcc-eEEECCCCCChHHHHHHHHhhcC
Q 048723           28 KAWKRG-YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        28 ~~~~rg-~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.+.++ .+|+||+|+||||++.+|.-.+.
T Consensus        19 i~f~~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           19 VEFKEGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EECCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEeCCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            444456 78899999999999999986664

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.79  E-value=0.0007  Score=54.17  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+||+|+|||||++.|++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            38999999999999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.78  E-value=0.00063  Score=54.30  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|+||+|+|||||++.+++...
T Consensus        32 v~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           32 VVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            78999999999999999998754

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.78  E-value=0.0011  Score=62.56  Aligned_cols=24  Identities=46%  Similarity=0.602  Sum_probs=21.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++|.|||||||||++.+|+..+.
T Consensus       206 ~~~I~G~pGTGKTt~i~~l~~~l~  229 (574)
T 3e1s_A          206 LVVLTGGPGTGKSTTTKAVADLAE  229 (574)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            388899999999999999998764

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.76  E-value=0.00049  Score=56.63  Aligned_cols=27  Identities=33%  Similarity=0.278  Sum_probs=20.8

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhh
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++...-++|+|+||+|||+++..++..
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            333333889999999999999887643

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.75  E-value=0.00055  Score=56.67  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=22.4

Q ss_pred             CCCcc--eEEECCCCCChHHHHHHHHhh
Q 048723           29 AWKRG--YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        29 ~~~rg--~lL~GPpGtGKTtlakaia~~   54 (236)
                      ...+|  +.|.||+||||||+++.|++.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34555  789999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.75  E-value=0.00087  Score=53.69  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=22.1

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +-++|+||+|+||||+++.|...+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            4488999999999999999998764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.75  E-value=0.0023  Score=57.17  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=26.4

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      +-++|+||||+|||+|+..++......  +..++++++.
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E  111 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAE  111 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECC
Confidence            338899999999999999988765322  2344555554

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.74  E-value=0.00063  Score=58.34  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|+|||||||+++.|+ .++.+
T Consensus        78 I~I~G~~GSGKSTva~~La-~lg~~  101 (281)
T 2f6r_A           78 LGLTGISGSGKSSVAQRLK-NLGAY  101 (281)
T ss_dssp             EEEEECTTSCHHHHHHHHH-HHTCE
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCc
Confidence            7889999999999999999 45544

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.71  E-value=0.0013  Score=57.37  Aligned_cols=44  Identities=14%  Similarity=0.182  Sum_probs=29.0

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcc----cCceEEEEeecC
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL----VGEKGIVFTTNY   71 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~----~~~~~vi~ttN~   71 (236)
                      ++...-++|+||||+|||+|+..++.....+-    .+...+++++..
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            33333388999999999999999998753220    024455555543

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.70  E-value=0.00099  Score=53.26  Aligned_cols=24  Identities=17%  Similarity=0.206  Sum_probs=21.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      -+.|+|++||||||++..|+..+.
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhH
Confidence            378999999999999999999874

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.70  E-value=0.00093  Score=53.62  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=27.5

Q ss_pred             hHHhhhCCCCCcc-eEEECCCCCChHHHHHHHHh
Q 048723           21 EYCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        21 ~~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~   53 (236)
                      .++..+++..+.. ++|+|+||+|||||++.+.+
T Consensus        14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4667777776666 89999999999999999875

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.70  E-value=0.00085  Score=60.73  Aligned_cols=32  Identities=25%  Similarity=0.528  Sum_probs=27.8

Q ss_pred             hhCCCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++.+++.+|  ++|+||||+|||||++.|++..+
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            456778888  99999999999999999998763

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.69  E-value=0.00093  Score=54.53  Aligned_cols=29  Identities=17%  Similarity=0.127  Sum_probs=26.0

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcccC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDLVG   61 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~~~   61 (236)
                      -+.|.||+||||||+++.||..++++|..
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            37899999999999999999999998643

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.69  E-value=0.00061  Score=64.18  Aligned_cols=29  Identities=34%  Similarity=0.409  Sum_probs=25.2

Q ss_pred             CCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ..+|  +.|+|||||||||++++|++.+...
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~  396 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLMEM  396 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence            3455  8899999999999999999999765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.67  E-value=0.00026  Score=67.97  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=26.7

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHH
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMA   52 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia   52 (236)
                      .++++++.+++|  +.|+||||||||||+++|.
T Consensus       337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            477788888888  8899999999999997654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.66  E-value=0.0011  Score=55.74  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=23.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +.|.|||||||||+++.|+..++..+
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~g~~~   36 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKFGIPQ   36 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             eeeECCCCCCHHHHHHHHHHHhCCCe
Confidence            78999999999999999999988773

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.65  E-value=0.00087  Score=53.34  Aligned_cols=33  Identities=30%  Similarity=0.411  Sum_probs=20.1

Q ss_pred             HHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhh
Q 048723           22 YCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        22 ~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++++++..+.. ++|+|+||+|||||++.+.+.
T Consensus        13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -----------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHhhccCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            445566655544 899999999999999999873

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.65  E-value=0.00082  Score=61.10  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+||||+|||||+++|++...+.
T Consensus        72 valvG~nGaGKSTLln~L~Gl~~p~   96 (413)
T 1tq4_A           72 VAVTGETGSGKSSFINTLRGIGNEE   96 (413)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCCTTS
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCcc
Confidence            6899999999999999999976544

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.65  E-value=0.0034  Score=55.32  Aligned_cols=64  Identities=19%  Similarity=0.260  Sum_probs=34.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh-cC-CcccEEecccCCHHHH
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR-RG-RMDKRIEMSYCCFEAF   99 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r-~g-R~d~~i~~~~p~~~~~   99 (236)
                      ++++||||||||||+..++........+...+++++.  +.+++...+ .| -.+..+.....+.++.
T Consensus        31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E--~s~~~~ra~~lGvd~d~llv~~~~~~E~~   96 (333)
T 3io5_A           31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE--FGITPAYLRSMGVDPERVIHTPVQSLEQL   96 (333)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS--CCCCHHHHHHTTCCGGGEEEEECSBHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc--chhhHHHHHHhCCCHHHeEEEcCCCHHHH
Confidence            7889999999999977776654321112445555553  334443333 22 1233444433445544

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.64  E-value=0.00098  Score=70.90  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ++.+++++|+||||||||+|+.+++......  |...+++++.
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e 1464 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 1464 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcc
Confidence            5566669999999999999999998887554  3444444443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.63  E-value=0.001  Score=57.72  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=21.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+||||+|||||+++|+ .+.+.
T Consensus       168 ~~l~G~sG~GKSTLln~l~-~~~~~  191 (302)
T 2yv5_A          168 CILAGPSGVGKSSILSRLT-GEELR  191 (302)
T ss_dssp             EEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred             EEEECCCCCCHHHHHHHHH-HhhCc
Confidence            7899999999999999999 76655

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.61  E-value=0.0011  Score=58.71  Aligned_cols=23  Identities=48%  Similarity=0.761  Sum_probs=21.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.|+||||+|||||+.+|.+.+.
T Consensus        77 v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           77 VGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhh
Confidence            88999999999999999998763

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.59  E-value=0.00065  Score=59.77  Aligned_cols=29  Identities=34%  Similarity=0.532  Sum_probs=23.1

Q ss_pred             CCCCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723           27 GKAWKRG-YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        27 ~~~~~rg-~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .+.+.+| .+|+||||+|||+++.||.-.+
T Consensus        18 ~i~f~~~~~~i~G~NGsGKS~lleAi~~~l   47 (339)
T 3qkt_A           18 VVEFKEGINLIIGQNGSGKSSLLDAILVGL   47 (339)
T ss_dssp             EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEcCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3445566 6899999999999999986654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.58  E-value=0.0018  Score=52.22  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             CcceEEECCCCCChHHHHHHHHhh
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      .+|++|.||||+||||++..+...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            467999999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.58  E-value=0.00092  Score=59.22  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=23.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+||+|||||+|+..||..++..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~l~~e   67 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAHFPLE   67 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTSCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHCCCc
Confidence            38899999999999999999988743

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.57  E-value=0.0011  Score=59.20  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=22.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC-Cc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN-YD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~-~~   58 (236)
                      ++|+||||+|||||+++|++... +.
T Consensus       218 ~~lvG~sG~GKSTLln~L~g~~~~~~  243 (358)
T 2rcn_A          218 SIFAGQSGVGKSSLLNALLGLQNEIL  243 (358)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred             EEEECCCCccHHHHHHHHhccccccc
Confidence            88999999999999999999887 55

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.54  E-value=0.0013  Score=58.30  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=22.6

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +-++|.||+||||||+++.||..++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3488999999999999999999886

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=96.54  E-value=0.0018  Score=59.89  Aligned_cols=34  Identities=12%  Similarity=-0.040  Sum_probs=23.2

Q ss_pred             ceEEEEeecCcc-----------ccchHHHhcCCcccEE-ecccCCHH
Q 048723           62 EKGIVFTTNYVD-----------KLDPALIRRGRMDKRI-EMSYCCFE   97 (236)
Q Consensus        62 ~~~vi~ttN~~~-----------~ld~al~r~gR~d~~i-~~~~p~~~   97 (236)
                      ...||+|+|...           .|+++++.  |||.++ .+++|+.+
T Consensus       339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e  384 (506)
T 3f8t_A          339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG  384 (506)
T ss_dssp             CCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred             CeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence            467889999875           78899999  998766 45666654

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.54  E-value=0.001  Score=53.72  Aligned_cols=32  Identities=22%  Similarity=0.169  Sum_probs=24.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ++++|++|||||+++..++.. +.    .++.+.|..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~----~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-AP----QVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CS----SEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CC----CeEEEecCC
Confidence            688999999999999999976 42    355555543

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.51  E-value=0.00069  Score=59.10  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=25.1

Q ss_pred             hCCCCCcc-eEEECCCCCChHHHHHHHHhhcC
Q 048723           26 IGKAWKRG-YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        26 ~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.+.+.+| .+|+||+|+|||+|+.+|.-.++
T Consensus        18 ~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg   49 (322)
T 1e69_A           18 SLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFG   49 (322)
T ss_dssp             EEEECCSSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             eEEecCCCcEEEECCCCCcHHHHHHHHHHHhC
Confidence            34555566 78999999999999999997663

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.51  E-value=0.0015  Score=62.08  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=21.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +.|+||+|||||||+++|++.+.+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC--
T ss_pred             EEEECCCCChHHHHHHHHhCCCCC
Confidence            899999999999999999998644

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.50  E-value=0.0023  Score=55.74  Aligned_cols=40  Identities=13%  Similarity=0.122  Sum_probs=27.6

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      +....-++|.|+||+|||+|+..+|......  +..+++++.
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~sl  104 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSL  104 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEES
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence            3333338899999999999999998765433  234455554

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.50  E-value=0.0011  Score=58.81  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.3

Q ss_pred             cceEE--ECCCCCChHHHHHHHHhhc
Q 048723           32 RGYLL--YGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg~lL--~GPpGtGKTtlakaia~~l   55 (236)
                      +.++|  +||||+|||++++.+++.+
T Consensus        51 ~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           51 VNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            45888  9999999999999999876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.50  E-value=0.0013  Score=50.91  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|+||+|||||++.+.+.
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3889999999999999999874

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.46  E-value=0.0017  Score=58.90  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=23.0

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .-++|+||+|+||||++.+|+..+...
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~~~~~~   53 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISFVLGVR   53 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence            338899999999999999999987653

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=96.46  E-value=0.0023  Score=62.75  Aligned_cols=38  Identities=32%  Similarity=0.429  Sum_probs=25.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      +++.||||||||+++..++..+-..-...+++.+.||.
T Consensus       374 ~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~  411 (800)
T 2wjy_A          374 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNI  411 (800)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHH
Confidence            78899999999998777776653210124555555553

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.42  E-value=0.00076  Score=61.40  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=21.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|+||||+|||||+++|++...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            69999999999999999998764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.41  E-value=0.00088  Score=65.74  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=26.2

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++.++++. ..|  ++|+||||+||||++++|++..
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            45556666 444  8899999999999999999863

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0041  Score=48.94  Aligned_cols=24  Identities=17%  Similarity=0.462  Sum_probs=21.3

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..++|+|++|+|||||+..+.+..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            349999999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.39  E-value=0.0021  Score=56.35  Aligned_cols=25  Identities=24%  Similarity=0.598  Sum_probs=22.4

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +-++|+||+|||||+|+..||..++
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCC
Confidence            3478899999999999999999875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.39  E-value=0.0014  Score=51.75  Aligned_cols=21  Identities=24%  Similarity=0.605  Sum_probs=19.6

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||++.+++.
T Consensus         5 v~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999999874

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.37  E-value=0.0027  Score=54.68  Aligned_cols=26  Identities=38%  Similarity=0.330  Sum_probs=22.8

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +.++|+||+|+|||+|++.+++.+..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~   56 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNL   56 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence            45889999999999999999988753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.35  E-value=0.0019  Score=50.61  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||++.|++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999874

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.34  E-value=0.0011  Score=64.77  Aligned_cols=32  Identities=28%  Similarity=0.289  Sum_probs=25.6

Q ss_pred             HhhhCCCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723           23 CAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        23 ~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.++++. ..-++|+||||+||||++++|++..
T Consensus       569 l~disl~-g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          569 PNDLEMA-HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             CEEEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eeeccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence            3455555 4448899999999999999999875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.29  E-value=0.0026  Score=52.42  Aligned_cols=25  Identities=40%  Similarity=0.420  Sum_probs=22.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.||+||||||+++.|+..+...
T Consensus         9 i~~eG~~gsGKsT~~~~l~~~l~~~   33 (213)
T 4edh_A            9 VTLEGPEGAGKSTNRDYLAERLRER   33 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            7789999999999999999988654

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.28  E-value=0.0014  Score=61.21  Aligned_cols=25  Identities=24%  Similarity=0.550  Sum_probs=22.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|+|||||||+++.|+..++..
T Consensus        38 IvlvGlpGSGKSTia~~La~~L~~~   62 (520)
T 2axn_A           38 IVMVGLPARGKTYISKKLTRYLNWI   62 (520)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhc
Confidence            7889999999999999999988644

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.28  E-value=0.0068  Score=48.93  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      .++|+|++|+|||||+..|+..+..
T Consensus        32 ~i~i~G~~g~GKTTl~~~l~~~~~~   56 (221)
T 2wsm_A           32 AVNIMGAIGSGKTLLIERTIERIGN   56 (221)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4899999999999999999988643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.28  E-value=0.0025  Score=48.34  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++++|++|+|||||+..+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.27  E-value=0.0024  Score=48.66  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||++.+.+..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            38999999999999999998753

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.27  E-value=0.00082  Score=66.85  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=27.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~   54 (236)
                      .+..++++....|  ++|+||||+||||++++|+..
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            3455677776665  889999999999999998753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.27  E-value=0.0024  Score=56.14  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      -++|+||+|||||+|+..||..++.
T Consensus         5 ~i~i~GptgsGKt~la~~La~~~~~   29 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKRLNG   29 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred             EEEEECCCcCCHHHHHHHHHHhCcc
Confidence            3788999999999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.26  E-value=0.0027  Score=55.35  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=20.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+||+|+||||+++.|.+..
T Consensus         7 ~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            7 TLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEecCCCCHHHHHHHHHhhc
Confidence            7899999999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.25  E-value=0.00047  Score=60.29  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=19.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+||||+|||||+++|++...+.
T Consensus       176 ~~lvG~sG~GKSTLln~L~g~~~~~  200 (307)
T 1t9h_A          176 TVFAGQSGVGKSSLLNAISPELGLR  200 (307)
T ss_dssp             EEEEESHHHHHHHHHHHHCC-----
T ss_pred             EEEECCCCCCHHHHHHHhccccccc
Confidence            8899999999999999999987665

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.24  E-value=0.0027  Score=48.20  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            38999999999999999988643

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.23  E-value=0.0034  Score=58.53  Aligned_cols=25  Identities=8%  Similarity=0.034  Sum_probs=23.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      .+.|.|++||||||++++|+..++.
T Consensus       397 ~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          397 SIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             EEEecccCCCCHHHHHHHHHHHHHH
Confidence            3889999999999999999999985

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.22  E-value=0.0028  Score=54.52  Aligned_cols=24  Identities=33%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.++|+||+|+|||+|++.+++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc
Confidence            458999999999999999999875

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.19  E-value=0.0018  Score=56.16  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=20.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+||||+|||+|+..++...
T Consensus       101 ~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A          101 TEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.17  E-value=0.0023  Score=50.01  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|+||+|||||++.|++..
T Consensus         7 i~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            7 VVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999999753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.16  E-value=0.0029  Score=51.03  Aligned_cols=23  Identities=17%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..|.+..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999865

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.15  E-value=0.0011  Score=57.26  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=18.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.|.||+||||||+++.|+..++
T Consensus         8 IgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            8 ISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            78899999999999999999765

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=96.15  E-value=0.0063  Score=54.48  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ..++|+|++|||||+++++|.....
T Consensus       161 ~~vli~Ge~GtGK~~lAr~ih~~s~  185 (387)
T 1ny5_A          161 CPVLITGESGVGKEVVARLIHKLSD  185 (387)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCeEEecCCCcCHHHHHHHHHHhcC
Confidence            3489999999999999999988764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.15  E-value=0.0014  Score=65.23  Aligned_cols=30  Identities=23%  Similarity=0.215  Sum_probs=23.8

Q ss_pred             HhhhCCCCCcc--eEEECCCCCChHHHHHHHH
Q 048723           23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMA   52 (236)
Q Consensus        23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia   52 (236)
                      ..++++....|  ++|+||||+||||++++|+
T Consensus       652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             CEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             cccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34555666555  8899999999999999994

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.14  E-value=0.0031  Score=48.06  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            38999999999999999998654

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.14  E-value=0.0032  Score=51.44  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=18.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++++||||||||+++..++...
T Consensus         8 ~l~tG~pGsGKT~~a~~~~~~~   29 (199)
T 2r2a_A            8 CLITGTPGSGKTLKMVSMMAND   29 (199)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999988865443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.13  E-value=0.0032  Score=47.79  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.13  E-value=0.0028  Score=48.72  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=19.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|+||+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            38999999999999999998653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.13  E-value=0.0028  Score=47.95  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++++|++|+|||||+..+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            38999999999999999998753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.12  E-value=0.0033  Score=48.00  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=20.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||++.+.+..
T Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            9 VCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            8999999999999999998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.11  E-value=0.0033  Score=48.51  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||+..+.+..
T Consensus        10 i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A           10 VILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.11  E-value=0.0044  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+.++.+.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999999876

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.11  E-value=0.0032  Score=48.10  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=19.5

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999999874

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=96.08  E-value=0.0029  Score=52.63  Aligned_cols=27  Identities=15%  Similarity=0.081  Sum_probs=24.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      -+.+.|++||||||+++.||..++.++
T Consensus        16 iI~i~g~~gsGk~~i~~~la~~lg~~~   42 (223)
T 3hdt_A           16 IITIEREYGSGGRIVGKKLAEELGIHF   42 (223)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence            378899999999999999999999886

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.08  E-value=0.0035  Score=47.92  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++++|++|+|||||+..+.+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            38999999999999999998653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.07  E-value=0.0036  Score=48.37  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            38999999999999999998753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.06  E-value=0.0033  Score=52.14  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=21.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|.|++||||||+++.|+..+.
T Consensus         5 i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            5 LSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999884

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.05  E-value=0.0032  Score=48.10  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+.-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            38999999999999999998643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.04  E-value=0.0033  Score=48.15  Aligned_cols=21  Identities=33%  Similarity=0.632  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus         5 i~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            789999999999999999753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.03  E-value=0.0029  Score=52.85  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=18.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|.||+||||||+++.|+..+.
T Consensus        28 I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           28 ITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             EEEECCC---CHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            77899999999999999999884

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.02  E-value=0.0018  Score=54.53  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|.|++||||||+++.|+..+.
T Consensus        27 I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           27 ISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             EEEECSTTSSHHHHHTTTGGGCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhcC
Confidence            78899999999999999999873

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.02  E-value=0.0039  Score=47.44  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||++.+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3899999999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.02  E-value=0.005  Score=47.49  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+..+.+.
T Consensus        10 ~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A           10 VVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             EEEEESCTTTTHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.01  E-value=0.0039  Score=47.47  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.5

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus         9 i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.99  E-value=0.0036  Score=54.06  Aligned_cols=21  Identities=29%  Similarity=0.514  Sum_probs=19.9

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||+.+|.+.
T Consensus        11 VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A           11 IAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            889999999999999999975

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.99  E-value=0.0041  Score=48.03  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=19.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||+..+.+..
T Consensus         9 i~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            9 IVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEECcCCCCHHHHHHHHHhCc
Confidence            8999999999999999998643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.98  E-value=0.0065  Score=56.54  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++|+|+||+||||++..||..+.
T Consensus       103 vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          103 VIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999998764

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=95.98  E-value=0.0045  Score=43.05  Aligned_cols=66  Identities=9%  Similarity=-0.006  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHccc---ccc-cChHHHHHHHHHHHHHHH
Q 048723           95 CFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMPK---SDE-EDADSCLKNLIEALKVAK  160 (236)
Q Consensus        95 ~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~~---~~~-~~~~~~~~~~~~~L~~~~  160 (236)
                      +.+.|..|++.|+.........++..++. +.||||+||..+|..+   +.. ....++.+++..++++.+
T Consensus         2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~   72 (83)
T 3aji_B            2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVI   72 (83)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence            56789999999987654333334566666 7799999999888762   222 234577778877777654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.98  E-value=0.004  Score=48.53  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+..+.+.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999999864

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.97  E-value=0.0037  Score=59.70  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=21.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|+|||||||+++.|+..+
T Consensus        55 IvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           55 VWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999988

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.97  E-value=0.004  Score=56.87  Aligned_cols=46  Identities=15%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             HhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           23 CAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        23 ~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      +.++...+++|  ++|.||||+|||||+..|+...... .+..+++++.
T Consensus       193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~  240 (454)
T 2r6a_A          193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSL  240 (454)
T ss_dssp             HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEES
T ss_pred             HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEEC
Confidence            33333334555  8899999999999999999876432 1233445544

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.96  E-value=0.0019  Score=57.39  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=24.4

Q ss_pred             hhhCCCCCcc-eEEECCCCCChHHHHHHHHh
Q 048723           24 AKIGKAWKRG-YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        24 ~~~~~~~~rg-~lL~GPpGtGKTtlakaia~   53 (236)
                      .+..+.+.+| .+|+||+|+|||+++.||.-
T Consensus        17 ~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           17 VNSRIKFEKGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4444556667 78999999999999999986

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.95  E-value=0.0035  Score=50.32  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=17.3

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++++||||+||||++..++..
T Consensus         6 ~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            6 TVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999998555544

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.93  E-value=0.0041  Score=51.50  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=22.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++|.||+|+||||+++.|+..+..
T Consensus         8 i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            8 ILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcc
Confidence            778999999999999999999875

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.93  E-value=0.0036  Score=56.72  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      -++|.||+|||||+|+..||..++.
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~~   28 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFNG   28 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred             EEEEECcchhhHHHHHHHHHHHCCC
Confidence            3788999999999999999998764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.93  E-value=0.0045  Score=48.20  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||+..|.+..
T Consensus         7 i~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            7 LVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.92  E-value=0.0038  Score=57.29  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=22.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|.|||||||+++.|+..++..
T Consensus        42 IvlvGlpGsGKSTia~~La~~l~~~   66 (469)
T 1bif_A           42 IVMVGLPARGKTYISKKLTRYLNFI   66 (469)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhcc
Confidence            8899999999999999999987644

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.92  E-value=0.003  Score=49.77  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             cceEEECCCCCChHHHHHHHHhh
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      ..++|+|++|+|||||+..|.+.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            34999999999999999999865

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.92  E-value=0.0055  Score=46.86  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+..+.+.
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.91  E-value=0.0046  Score=47.04  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=19.2

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.91  E-value=0.005  Score=56.19  Aligned_cols=24  Identities=38%  Similarity=0.602  Sum_probs=21.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++|+||||+||||++..||..+.
T Consensus       101 vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C          101 VILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.87  E-value=0.0036  Score=52.90  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|+||+|||||+.+|.+..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.86  E-value=0.0042  Score=47.79  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=19.4

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus        17 i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           17 LVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.86  E-value=0.0044  Score=51.12  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++|+|++|+|||||+.+|.+...
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc
Confidence            389999999999999999998653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.86  E-value=0.0049  Score=48.56  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            38999999999999999998753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.86  E-value=0.005  Score=47.64  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus        15 i~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           15 LVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            899999999999999999875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.85  E-value=0.005  Score=47.38  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            49999999999999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.85  E-value=0.0039  Score=47.57  Aligned_cols=21  Identities=38%  Similarity=0.695  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||++.+.+.
T Consensus         5 i~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHcCc
Confidence            899999999999999998653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.84  E-value=0.0013  Score=59.74  Aligned_cols=30  Identities=30%  Similarity=0.334  Sum_probs=24.4

Q ss_pred             hhCCCCCcc--eEEECCCCCChHHHHHHHHhh
Q 048723           25 KIGKAWKRG--YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        25 ~~~~~~~rg--~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++++.++.+  +.|+||||+|||||+++|++.
T Consensus       149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            344445555  889999999999999999987

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.84  E-value=0.0045  Score=47.72  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||++.+.+.
T Consensus        12 i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           12 LVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999999876

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.83  E-value=0.0051  Score=47.67  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            38999999999999999998643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.83  E-value=0.0051  Score=48.23  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||+..|.+..
T Consensus        24 i~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           24 LVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            8999999999999999998753

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.0047  Score=60.64  Aligned_cols=38  Identities=29%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      +++.||||||||+++..+...+-..-...+++.+.||.
T Consensus       378 ~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~  415 (802)
T 2xzl_A          378 SLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNV  415 (802)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHH
Confidence            68899999999988776665442100124566666654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.82  E-value=0.0044  Score=56.42  Aligned_cols=41  Identities=12%  Similarity=0.105  Sum_probs=27.6

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      +....-++|.|+||+|||+|+..||...... .+..+++++.
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~sl  237 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSL  237 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEES
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEC
Confidence            4433338899999999999999998865421 1233444554

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.81  E-value=0.0057  Score=47.84  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|+|++|+|||||++.+.+...
T Consensus        17 i~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           17 IVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhcc
Confidence            89999999999999999987654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.79  E-value=0.005  Score=47.49  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+..+.+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999998754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.77  E-value=0.0056  Score=47.30  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            38999999999999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.77  E-value=0.0063  Score=53.73  Aligned_cols=22  Identities=45%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|+||+||||++..|+..+
T Consensus        82 I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           82 VGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999876

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.77  E-value=0.0026  Score=64.00  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=26.2

Q ss_pred             hHHhhhCCCCCc-------c--eEEECCCCCChHHHHHHHHhhc
Q 048723           21 EYCAKIGKAWKR-------G--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        21 ~~~~~~~~~~~r-------g--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++.++++....       |  ++|+||||+||||++++| +.+
T Consensus       770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence            456666666543       3  889999999999999999 544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.75  E-value=0.0049  Score=47.98  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||++.+.+..
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            38999999999999999998653

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.75  E-value=0.0058  Score=50.84  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=22.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +.|.|++||||||+++.|+..+..
T Consensus        24 i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           24 ITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            778899999999999999998865

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.75  E-value=0.006  Score=53.94  Aligned_cols=38  Identities=21%  Similarity=0.369  Sum_probs=27.6

Q ss_pred             CCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           30 WKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        30 ~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      +.+|  ++|.|+||+|||+|+..||......  +..+++++.
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl   82 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL   82 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence            4445  8899999999999999998876432  344445554

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.73  E-value=0.0063  Score=48.19  Aligned_cols=22  Identities=23%  Similarity=0.513  Sum_probs=20.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+..+.+.
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4999999999999999999875

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.73  E-value=0.0073  Score=53.79  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=23.1

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ...++++||+|+||||+++.|+..+..
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~   61 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREYM   61 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999987643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.73  E-value=0.0051  Score=48.22  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=19.7

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||++.+.+.
T Consensus        10 i~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A           10 IVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999999875

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.73  E-value=0.007  Score=50.60  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +++.|+||+||||++-.+|..+.
T Consensus         9 I~~~~kgGvGKTt~a~~la~~l~   31 (228)
T 2r8r_A            9 VFLGAAPGVGKTYAMLQAAHAQL   31 (228)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            88899999999999999998874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.72  E-value=0.0042  Score=48.46  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            789999999999999999875

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.71  E-value=0.0071  Score=47.46  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||++.+.+.
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3999999999999999998764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.71  E-value=0.0061  Score=48.45  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..++|+|++|+|||||+..+.+..
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            348999999999999999998653

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.70  E-value=0.0049  Score=51.70  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.||+||||||+++.|+..+...
T Consensus        30 i~~eG~~GsGKsT~~~~l~~~l~~~   54 (236)
T 3lv8_A           30 IVIEGLEGAGKSTAIQVVVETLQQN   54 (236)
T ss_dssp             EEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhc
Confidence            7789999999999999999988644

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.70  E-value=0.0062  Score=47.22  Aligned_cols=21  Identities=14%  Similarity=0.339  Sum_probs=19.3

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus         8 i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            8 CVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.69  E-value=0.0063  Score=47.33  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=19.6

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus        21 i~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           21 LVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999999865

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.69  E-value=0.0063  Score=47.83  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            38999999999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.68  E-value=0.0063  Score=47.79  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            38999999999999999998754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.67  E-value=0.006  Score=47.71  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            49999999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.65  E-value=0.0065  Score=48.10  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            38999999999999999998653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.64  E-value=0.0068  Score=47.85  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=19.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||+..+.+..
T Consensus        23 i~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           23 VGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEECCTTSCHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999998777643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.63  E-value=0.0068  Score=48.10  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            38999999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.61  E-value=0.0069  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            38999999999999999998753

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.61  E-value=0.011  Score=52.53  Aligned_cols=22  Identities=14%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|+||+|||||+++|++..
T Consensus       182 V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          182 IGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            7899999999999999999764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.60  E-value=0.0071  Score=46.79  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=19.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+..+.+.
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999999864

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.60  E-value=0.0066  Score=54.74  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      +.|+|+||+|||||.++|.+.
T Consensus        23 vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           23 TGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             EEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            889999999999999999983

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.60  E-value=0.012  Score=47.67  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=21.8

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.++|+|++|+|||||+..++..+.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3488999999999999999998763

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.60  E-value=0.0066  Score=48.19  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=20.8

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..++|+|++|+|||||+..+.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            348999999999999999998753

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=95.58  E-value=0.0022  Score=45.51  Aligned_cols=44  Identities=9%  Similarity=-0.139  Sum_probs=31.4

Q ss_pred             CHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHcc
Q 048723           95 CFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLMP  138 (236)
Q Consensus        95 ~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~~  138 (236)
                      +.+.|..|++.|+.........++..++. +.||||+||..+|..
T Consensus         2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~e   46 (88)
T 3vlf_B            2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTE   46 (88)
T ss_dssp             CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHH
Confidence            34678899999987554433334566666 789999999877774

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.58  E-value=0.0011  Score=65.22  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=28.8

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHH-HHhhc
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAA-MANFL   55 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlaka-ia~~l   55 (236)
                      .++++++.+++|  +.|+|++|+|||||++. |++.+
T Consensus       512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            477888888988  88999999999999996 66544

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.58  E-value=0.0065  Score=48.38  Aligned_cols=23  Identities=13%  Similarity=0.167  Sum_probs=20.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            38999999999999999998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.56  E-value=0.0076  Score=47.34  Aligned_cols=22  Identities=14%  Similarity=0.238  Sum_probs=19.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+..+.+.
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3899999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.55  E-value=0.0075  Score=47.47  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=19.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||+..+.+..
T Consensus        25 i~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           25 LTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.55  E-value=0.0068  Score=47.03  Aligned_cols=22  Identities=27%  Similarity=0.452  Sum_probs=19.3

Q ss_pred             cceEEECCCCCChHHHHHHHHh
Q 048723           32 RGYLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~   53 (236)
                      ..++|+|++|+|||||+..+.+
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3499999999999999999873

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.54  E-value=0.0077  Score=47.46  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=20.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||+..+.+..
T Consensus        24 i~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           24 YIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.53  E-value=0.0068  Score=47.91  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            38999999999999999998654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.51  E-value=0.0081  Score=47.38  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||+..+.+..
T Consensus        24 i~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           24 LAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCcHHHHHHHHHhCC
Confidence            8999999999999999988643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.51  E-value=0.0069  Score=47.75  Aligned_cols=22  Identities=23%  Similarity=0.387  Sum_probs=20.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||+..+.+..
T Consensus        26 i~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            8999999999999999998764

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.51  E-value=0.0066  Score=57.35  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=22.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++|.|+|||||||+++.|+..++.
T Consensus       399 I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          399 IFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEeecCCCCCHHHHHHHHHHHhcc
Confidence            788999999999999999998863

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.50  E-value=0.0062  Score=47.56  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++++|++|+|||||+..+.+..
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            38999999999999999998654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.50  E-value=0.0099  Score=54.22  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=21.8

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.++++|++|+||||++-.||..+.
T Consensus       101 ~vI~ivG~~GvGKTT~a~~LA~~l~  125 (433)
T 2xxa_A          101 AVVLMAGLQGAGKTTSVGKLGKFLR  125 (433)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3488899999999999999998774

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.50  E-value=0.0058  Score=47.30  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=19.7

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus        10 i~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A           10 LGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.49  E-value=0.008  Score=47.90  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+..+.+.
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.49  E-value=0.0071  Score=46.91  Aligned_cols=22  Identities=18%  Similarity=0.227  Sum_probs=19.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||||+..+.+.
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3899999999999999999853

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.49  E-value=0.007  Score=52.40  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=22.6

Q ss_pred             CCCcc-eEEECCCCCChHHHHHHHHhhc
Q 048723           29 AWKRG-YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        29 ~~~rg-~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +++.| +.|+|+||+|||||+.+|.+.-
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44556 8899999999999999998753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.49  E-value=0.0081  Score=47.36  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||++.+.+..
T Consensus        26 i~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           26 IVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.49  E-value=0.014  Score=48.41  Aligned_cols=23  Identities=26%  Similarity=0.661  Sum_probs=21.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +++.|++|+||||++..|+..+.
T Consensus        17 ~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           17 VVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            77899999999999999998876

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.48  E-value=0.007  Score=48.21  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998643

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.48  E-value=0.0068  Score=49.94  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.||+||||||.++.|+..+...
T Consensus         6 i~~eG~~gsGKsT~~~~l~~~l~~~   30 (213)
T 4tmk_A            6 IVIEGLEGAGKTTARNVVVETLEQL   30 (213)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            7789999999999999999988544

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.47  E-value=0.0074  Score=47.51  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=19.6

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus        11 i~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           11 VVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCcHHHHHHHHHcC
Confidence            899999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.46  E-value=0.0096  Score=47.22  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             ceEEECCCCCChHHHHHHHHh
Q 048723           33 GYLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~   53 (236)
                      .++|+|++|+|||||+..+.+
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            399999999999999999864

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=95.46  E-value=0.0075  Score=57.25  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=19.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      -+++.|||||||||++..+...+
T Consensus       166 ~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          166 ISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHH
Confidence            38889999999999988877665

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.44  E-value=0.0079  Score=54.97  Aligned_cols=41  Identities=15%  Similarity=0.173  Sum_probs=28.7

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      |+....-++|.|+||+|||+|+..||......  +..+++++.
T Consensus       193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSl  233 (444)
T 3bgw_A          193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSL  233 (444)
T ss_dssp             SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECS
T ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEEC
Confidence            34433338899999999999999998876433  344555554

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=95.44  E-value=0.0014  Score=60.85  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             ChhHHhhhCCCCCcc-eEEECCCCCChHHHHHHHHhhcC
Q 048723           19 GKEYCAKIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +...|+++.+.+.+| .+|+|++|+|||+|+.+|.-.++
T Consensus        47 nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg   85 (517)
T 4ad8_A           47 NLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG   85 (517)
T ss_dssp             SBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHTC
T ss_pred             cccceeeEEEecCCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            344556666777777 67899999999999999987754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.39  E-value=0.025  Score=60.38  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ++..+.++|+||||+|||+|+..++......  +..++++++.
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E  420 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE  420 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcC
Confidence            5555558999999999999999998876543  3455555554

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.39  E-value=0.01  Score=54.73  Aligned_cols=42  Identities=17%  Similarity=0.037  Sum_probs=28.9

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      |+....-++|.|+||+|||+|+..+|...... .+..+++++.
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~  279 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML  279 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec
Confidence            34444448899999999999999999876543 1234455554

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.38  E-value=0.0087  Score=49.77  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=18.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++++||+|+||||++..++..+
T Consensus        15 ~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           15 EFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            6779999999999888777665

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.37  E-value=0.008  Score=52.98  Aligned_cols=31  Identities=13%  Similarity=0.246  Sum_probs=22.7

Q ss_pred             HhhhCCCCCcceEEECCCCCChHHHHHHHHhh
Q 048723           23 CAKIGKAWKRGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        23 ~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      +.++++.++ -++|+|++|+|||||+.+|.+.
T Consensus        27 l~~i~~~lp-~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           27 LPTLWDSLP-AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             C----CCCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred             cccccccCC-EEEEECCCCCcHHHHHHHHhCC
Confidence            333444444 5899999999999999999984

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=95.35  E-value=0.0099  Score=53.77  Aligned_cols=28  Identities=29%  Similarity=0.560  Sum_probs=24.6

Q ss_pred             CCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723           28 KAWKRG--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +++.+|  .+++||||+|||+|+..|++..
T Consensus       170 ~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i  199 (427)
T 3l0o_A          170 APIGKGQRGMIVAPPKAGKTTILKEIANGI  199 (427)
T ss_dssp             SCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             ccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence            566777  9999999999999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.32  E-value=0.0083  Score=51.15  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|+||+|||||..+|.+.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999999975

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.32  E-value=0.0098  Score=47.65  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=20.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|++|+|||||+..+.+..
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999998754

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.32  E-value=0.013  Score=51.21  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             CcceEEECCCCCChHHHHHHHHhh
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      .+|++|.|++|+||||++..+...
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            456999999999999999999875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.31  E-value=0.0086  Score=48.27  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||||++.+.+..
T Consensus        31 i~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           31 IVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998753

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.31  E-value=0.022  Score=59.93  Aligned_cols=42  Identities=21%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      |++..+.++|+||||||||+|+..++......  +...+++++.
T Consensus        30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~--G~~vlYI~te   71 (1706)
T 3cmw_A           30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE   71 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTT
T ss_pred             CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC--CCceEEEEec
Confidence            45555559999999999999999988754322  2344455543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.29  E-value=0.0085  Score=46.96  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=19.4

Q ss_pred             ceEEECCCCCChHHHHHHHHh
Q 048723           33 GYLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~   53 (236)
                      .++|+|++|+|||||+..+.+
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            399999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	2e-09
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	3e-07
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	4e-09
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	1e-05
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	4e-07
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	1e-05
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	2e-06
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	3e-06
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	7e-06
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	9e-06
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	3e-05
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	1e-04
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	2e-04
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	4e-04
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	7e-04
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	0.001
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	0.001
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	0.001
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	0.002
d1tuea_	205	c.37.1.20 (A:) Replication protein E1 helicase dom	0.004

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 20/126 (15%)

Query: 65  IVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAE 124
           I+  TN  D +DPA++R GR+D+ I +     ++ + + K+ L     A   ++  L   
Sbjct: 149 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 208

Query: 125 TNMASADVAENLMPKSDEEDADSCLKNLI-EALKVAKEEARKNAEEEALLKAEEAKKKAR 183
           TN  S               AD  L  +   A K+A    R++ E E   + E     + 
Sbjct: 209 TNGFSG--------------AD--LTEICQRACKLA---IRESIESEIRRERERQTNPSA 249

Query: 184 EEAKAE 189
            E + +
Sbjct: 250 MEVEED 255

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 6   KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGI 65
           K E+++ ++   E  +   K G    +G L YGPPG GK+ +  A+AN    + +  KG 
Sbjct: 16  KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 75

Query: 66  VFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAE---INSLL 122
              T +  + +  +       ++       F+    +AK+          A    IN +L
Sbjct: 76  ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 135

Query: 123 AE 124
            E
Sbjct: 136 TE 137

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 17/112 (15%)

Query: 65  IVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAE 124
           ++  TN  D LDPAL+R GR D++I +     +    + + +   +  A   ++  L   
Sbjct: 150 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 209

Query: 125 TNMASADVAENLMPKSDEEDADSCLKNLI-EALKVAKEEARKNAEEEALLKA 175
           T                   AD  L+NL+ EA  +A  E R+    + L +A
Sbjct: 210 TPGFVG--------------AD--LENLLNEAALLAAREGRRKITMKDLEEA 245

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 7  EEIKKDLKK---FSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEK 63
          EE K++LK+   F +      ++G    +G LL GPPG GK+ +  A+A       +   
Sbjct: 15 EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 74

Query: 64 GIVFTTNYV 72
          G  F   +V
Sbjct: 75 GSDFVEMFV 83

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 17/112 (15%)

Query: 65  IVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAE 124
           ++  TN  D LDPAL+R GR D+++ +          + K ++     A   +   +   
Sbjct: 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARG 212

Query: 125 TNMASADVAENLMPKSDEEDADSCLKNLI-EALKVAKEEARKNAEEEALLKA 175
           T   S               AD  L NL+ EA   A    ++        KA
Sbjct: 213 TPGFSG--------------AD--LANLVNEAALFAARGNKRVVSMVEFEKA 248

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 7  EEIKKDLKK---FSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEK 63
          +E K+++ +   +        K+G    +G L+ GPPGTGK+ +  A+A           
Sbjct: 18 DEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 77

Query: 64 GIVFTTNYV 72
          G  F   +V
Sbjct: 78 GSDFVEMFV 86

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 22/100 (22%), Positives = 38/100 (38%)

Query: 6   KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGI 65
             +IK+ ++           IG    RG LLYGPPGTGK+ +  A+AN          G 
Sbjct: 13  LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP 72

Query: 66  VFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS 105
              +    + +  L +     ++   +    +    +A  
Sbjct: 73  EIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 112

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 20/119 (16%)

Query: 6   KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGI 65
              +   LK                KR +L  GP  +GK+T+ AA+              
Sbjct: 137 DSVVYDFLKCMVYNI--------PKKRYWLFKGPIDSGKTTLAAALLELCGGK------- 181

Query: 66  VFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLAE 124
               N         +        I+     FE          D+ S      +++L   
Sbjct: 182 ALNVNLPLDRLNFELGVA-----IDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDY 235

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 13/90 (14%), Positives = 29/90 (32%)

Query: 7   EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIV 66
           + + + L       +      +      LL GPP +GK+ + A +A   N+  +      
Sbjct: 16  DPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 75

Query: 67  FTTNYVDKLDPALIRRGRMDKRIEMSYCCF 96
               + +      +++   D       C  
Sbjct: 76  KMIGFSETAKCQAMKKIFDDAYKSQLSCVV 105

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 7   EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIV 66
           E +K+ L+ + E     AK  K      LL+GPPG GK+T+   +A+ L  +L    G  
Sbjct: 15  ERLKQKLRVYLEA----AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA 70

Query: 67  FTT-NYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD 108
                 +  +    +  G +    E+     +A   L  +  D
Sbjct: 71  IEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMED 113

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 6   KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGI 65
           K  +           ++  K G    R  +LYGPPG GK+T    +A  L YD++ +   
Sbjct: 27  KNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 86

Query: 66  VFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFF 115
              +  +     A ++    +  +   +   E    L   +  I      
Sbjct: 87  DVRSKTLLN---AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD 133

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 11/66 (16%), Positives = 20/66 (30%)

Query: 35  LLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYC 94
            + G   +GKS ++  +A   N     E G  F    +   + A+         +     
Sbjct: 11  AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRY 70

Query: 95  CFEAFM 100
              A  
Sbjct: 71  IDYAVR 76

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 23/202 (11%), Positives = 56/202 (27%), Gaps = 7/202 (3%)

Query: 6   KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGI 65
           +  +  +L++  +GK+            +LL G PG+GK+++ +A+      +++     
Sbjct: 12  ENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 66

Query: 66  VFTTNYVDK--LDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA 123
            F   + +   L     +          +         L+    ++         +  + 
Sbjct: 67  TFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQ 126

Query: 124 ETNMASADVAENLMPKSDEEDADSCLKNLIEALKVAKEEARKNAEEEALLKAEEAKKKAR 183
              M  A   E  M        +S L  +     +  ++                K    
Sbjct: 127 TATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPT 186

Query: 184 EEAKAEKEEDKHAKQNVKDDGT 205
                 K       +    +G 
Sbjct: 187 NLETLHKTGLFSDIRLYNREGV 208

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 33 GYLLYGPPGTGKSTMIAAMANFL 55
          G L++G  GTGKST + A+A  L
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALL 52

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 7  EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD 58
          E +KK L    E     AK+        LL GPPG GK+T+   +A+ L  +
Sbjct: 15 ENVKKKLSLALEA----AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 62

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 9/112 (8%)

Query: 35  LLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYC 94
           ++ G PG GK+T++  +   L    +G         + +++     ++    + I     
Sbjct: 4   IITGEPGVGKTTLVKKIVERLGKRAIGF--------WTEEVRDPETKKRTGFRIITTEGK 55

Query: 95  CFEAFMVLAKSYLDIESHAFFAEINSLLAETNMASADVAENLMPKSDEEDAD 146
                     S   + S+    +    LA   +  A   E    +      D
Sbjct: 56  KKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERA-YREAKKDRRKVIIID 106

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 8/52 (15%)

Query: 7  EEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD 58
          EE+   LK  S+      +         LLYGP GTGK T   A+   +   
Sbjct: 17 EELTNFLKSLSDQP----RDLPH----LLLYGPNGTGKKTRCMALLESIFGP 60

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 10 KKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD 58
          K + K F + ++   K+        L+ G   TGKS++I    N LN  
Sbjct: 8  KDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLP 56

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 12/97 (12%), Positives = 24/97 (24%)

Query: 32  RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM 91
               L G PGTGK+  +  +              +    Y +           ++     
Sbjct: 44  PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR 103

Query: 92  SYCCFEAFMVLAKSYLDIESHAFFAEINSLLAETNMA 128
                + F+ L   +L       F  ++         
Sbjct: 104 RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDI 140

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLN 56
          G   K   +  GP  TGKS    +  +F+ 
Sbjct: 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.94
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.93
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.92
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.9
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.55
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.51
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.43
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.39
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.38
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.37
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.26
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.19
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.11
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.09
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.07
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.06
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.04
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.98
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.98
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.94
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.92
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.89
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.87
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.84
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.83
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.83
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.82
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.8
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.78
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.78
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.77
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.76
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.76
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.76
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.72
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.68
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.66
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.66
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.58
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.57
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.57
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.49
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	98.48
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.43
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.39
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.27
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	98.26
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.24
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.24
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.23
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.21
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.2
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.18
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.17
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.15
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.14
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.11
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.11
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.1
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.08
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.08
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.07
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.05
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.04
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.03
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.01
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.93
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.92
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.88
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.87
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.87
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.85
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.84
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.84
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.83
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.83
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.82
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.81
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.78
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.78
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.78
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.76
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.75
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.73
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.73
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.7
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.67
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.63
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.61
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.6
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.5
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.41
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.4
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.36
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.34
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.32
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.29
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.24
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.22
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.22
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.2
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.15
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.14
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.14
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	97.14
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.06
d1okkd2	207	GTPase domain of the signal recognition particle r	97.06
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.06
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.05
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.05
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.04
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.02
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.0
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.0
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.97
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.94
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.88
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.82
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.81
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.78
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.73
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.69
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.68
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.63
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.61
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.58
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.58
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.57
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.52
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.47
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.46
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.46
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.45
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.44
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.43
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.35
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.34
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.34
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.31
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.3
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.3
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.29
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.28
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.28
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.24
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.23
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.23
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.22
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.19
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.13
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.11
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.09
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.08
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.04
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.99
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.96
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.9
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.89
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.85
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.84
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.83
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.82
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.8
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.8
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.76
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.75
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.74
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.74
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.73
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.72
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.72
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.69
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.68
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.67
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.67
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.66
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.62
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.59
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.58
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.57
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.57
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.55
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.54
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.5
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.49
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.48
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.47
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.44
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.4
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.4
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.37
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.34
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.31
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.28
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.27
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.26
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.25
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.25
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.22
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.2
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.18
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.14
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.05
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.89
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.86
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.83
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.81
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.72
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.67
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.6
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.59
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.44
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.3
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.3
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.19
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.18
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	93.95
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.83
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.71
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.67
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	93.49
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.44
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.31
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	93.31
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.6
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.29
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.28
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.22
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	91.96
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.83
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.67
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.57
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.56
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	91.5
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.34
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	91.27
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.24
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.67
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.3
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.62
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.43
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.23
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.19
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	88.85
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.46
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	88.1
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.33
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	86.82
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.62
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.67
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	85.26
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	85.03
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	84.08
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	83.77
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	83.54
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	82.75
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	82.59
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	81.77
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	81.52
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.1

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=8.4e-27  Score=198.93  Aligned_cols=135  Identities=25%  Similarity=0.272  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +..|++|.+.+..++..++.|..+|+.+++|+|||||||||||+++++||+.++.++                       
T Consensus        10 ~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~   89 (258)
T d1e32a2          10 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA   89 (258)
T ss_dssp             SHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHH
Confidence            367899999998889999999999999999999999999999999999999999987                       


Q ss_pred             ------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEec
Q 048723           60 ------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM   91 (236)
Q Consensus        60 ------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~   91 (236)
                                                                      ..+++||+|||+++.+|++++|+||||+.|++
T Consensus        90 f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~  169 (258)
T d1e32a2          90 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI  169 (258)
T ss_dssp             HHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEEC
T ss_pred             HHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeEC
Confidence                                                            23689999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           92 SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        92 ~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      ++|+.++|..|++.++..........+..++. +.|||++||..++.
T Consensus       170 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~  216 (258)
T d1e32a2         170 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS  216 (258)
T ss_dssp             CCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHH
Confidence            99999999999999987543322223555655 77999999886655

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4e-26  Score=194.81  Aligned_cols=134  Identities=25%  Similarity=0.322  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      ++.|++|.+.+ .|+..++.|.++|..+++|+||+||||||||+++++||++++.++                       
T Consensus        18 ~~~k~~l~e~v-~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~   96 (256)
T d1lv7a_          18 DEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM   96 (256)
T ss_dssp             HHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHH
Confidence            56788887754 578889999999999999999999999999999999999999887                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ..++++|+|||+++.||++++|+||||..
T Consensus        97 f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~  176 (256)
T d1lv7a_          97 FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQ  176 (256)
T ss_dssp             HHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEE
T ss_pred             HHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEE
Confidence                                                               22579999999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      |+++.|+.++|..|++.++.........++..++. +.||+++||..++.
T Consensus       177 i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~  226 (256)
T d1lv7a_         177 VVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN  226 (256)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             EECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence            99999999999999999987554433334555655 78999999987765

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.6e-25  Score=190.01  Aligned_cols=134  Identities=26%  Similarity=0.341  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------
Q 048723            3 TKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------   59 (236)
Q Consensus         3 ~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------   59 (236)
                      +++|++|.+ +..++..+..|.++|..+++|+||+||||||||+++++||++++.++                       
T Consensus        15 ~~~k~~l~~-~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~   93 (247)
T d1ixza_          15 EEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL   93 (247)
T ss_dssp             HHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHH
Confidence            457777765 55678889999999999999999999999999999999999999988                       


Q ss_pred             ---------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccE
Q 048723           60 ---------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKR   88 (236)
Q Consensus        60 ---------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~   88 (236)
                                                                         ...++||+|||+++.+|++++|+||||..
T Consensus        94 f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~  173 (247)
T d1ixza_          94 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ  173 (247)
T ss_dssp             HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred             HHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEE
Confidence                                                               23568889999999999999999999999


Q ss_pred             EecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           89 IEMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        89 i~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      |+|+.|+.++|..|++.|+..........+..++. +.||+++||.+.+.
T Consensus       174 i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~  223 (247)
T d1ixza_         174 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN  223 (247)
T ss_dssp             EECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             EEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHH
Confidence            99999999999999999986443333333555555 67999999887664

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=7.1e-25  Score=187.68  Aligned_cols=134  Identities=27%  Similarity=0.337  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc------------------------
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL------------------------   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~------------------------   59 (236)
                      +.|++|.+.+..++..++.|.+.|.++++|+||+||||||||+++++||+.++.++                        
T Consensus        14 ~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f   93 (265)
T d1r7ra3          14 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF   93 (265)
T ss_dssp             CCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccccchHHHHHHHH
Confidence            45678888888888899999999999999999999999999999999999999997                        


Q ss_pred             --------------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           60 --------------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 --------------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                                                                        ..+++||+|||+++.||++++|+|||+..|
T Consensus        94 ~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i  173 (265)
T d1r7ra3          94 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI  173 (265)
T ss_dssp             HHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEE
T ss_pred             HHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEE
Confidence                                                              225899999999999999999999999999


Q ss_pred             ecccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-cCCCCHHHHHHHHc
Q 048723           90 EMSYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-ETNMASADVAENLM  137 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-~~gls~a~i~~~l~  137 (236)
                      +++.|+.++|..||+.++..........+..++. +.||+++||..++.
T Consensus       174 ~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~  222 (265)
T d1r7ra3         174 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ  222 (265)
T ss_dssp             ECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHH
T ss_pred             EecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHH
Confidence            9999999999999999886432221123344444 67899998876554

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=2.8e-14  Score=117.83  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=69.7

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------   59 (236)
                      ..+++||+|||||||||++++||+.++.++                                                  
T Consensus        34 ~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~  113 (238)
T d1in4a2          34 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDF  113 (238)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccHHHHHHHHHhhccCCchHHHHHHHhhhHHHhhcccceeee
Confidence            345799999999999999999999999887                                                  


Q ss_pred             ------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcccch
Q 048723           60 ------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDIESH  112 (236)
Q Consensus        60 ------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~~~~  112 (236)
                                        ...+++|++||+...+++++++  |++..+.+..|+...+..+++.+......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (238)
T d1in4a2         114 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDV  182 (238)
T ss_dssp             CCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred             eeeeeecCcccccccccCCCCeEEEEecCCCcccccccee--eeeEEEEecCCCHHHHHHHHHHhhhhccc
Confidence                              1256899999999999999988  99999999999999999988877654433

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.51  E-value=3e-14  Score=119.65  Aligned_cols=93  Identities=19%  Similarity=0.169  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------
Q 048723            6 KEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------   59 (236)
Q Consensus         6 k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------   59 (236)
                      .+.|++....+...   .+.....+.+|+||+||||||||+++++||+.++.++                          
T Consensus        18 i~~i~~~~~~~~~~---~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~   94 (246)
T d1d2na_          18 VTRVLDDGELLVQQ---TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFD   94 (246)
T ss_dssp             HHHHHHHHHHHHHH---HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhh
Confidence            34555555555432   2333345678899999999999999999999999887                          


Q ss_pred             ----------------------------------------------cCceEEEEeecCccccchHHHhcCCcccEEeccc
Q 048723           60 ----------------------------------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSY   93 (236)
Q Consensus        60 ----------------------------------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~   93 (236)
                                                                    ...++||+|||+++.+|++.++ +||+..|+++.
T Consensus        95 ~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~-~rF~~~i~~P~  173 (246)
T d1d2na_          95 DAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPN  173 (246)
T ss_dssp             HHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCC
T ss_pred             hhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhc-CccceEEecCC
Confidence                                                          1146889999999999876443 49999998844


Q ss_pred             CCHHHHHHHHH
Q 048723           94 CCFEAFMVLAK  104 (236)
Q Consensus        94 p~~~~~~~i~~  104 (236)
                      +  ..+..+++
T Consensus       174 ~--~~r~~il~  182 (246)
T d1d2na_         174 I--ATGEQLLE  182 (246)
T ss_dssp             E--EEHHHHHH
T ss_pred             c--hhHHHHHH
Confidence            3  33444444

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=1.1e-12  Score=108.30  Aligned_cols=78  Identities=22%  Similarity=0.283  Sum_probs=65.8

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------   59 (236)
                      ..+++||+|||||||||++++||+.+++++                                                  
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDe~~~~~~~~~~~l~~~~e~  113 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMED  113 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHTTCCTTCEEEEETGGGCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccchhhHHHHHhhccCCCeeeeecccccchhHHHhhhhhhhh
Confidence            456799999999999999999999999887                                                  


Q ss_pred             -------------------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           60 -------------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        60 -------------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                                         ....++++++|++...+++.++  |+...+.+..|+.+.+..++...+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~i~~~~~~~  180 (239)
T d1ixsb2         114 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARL  180 (239)
T ss_dssp             SEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGG--GCSEEEECCCCCHHHHHHHHHHHHGG
T ss_pred             hhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhc--ccceeeEeeccChhhhhHHHHHHHHH
Confidence                               1246688899999888888888  77788999999999998887766543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.39  E-value=3.3e-13  Score=116.68  Aligned_cols=76  Identities=20%  Similarity=0.283  Sum_probs=64.2

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcc--------------------------------------------------
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDL--------------------------------------------------   59 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~--------------------------------------------------   59 (236)
                      +++|+||+||||||||+|+++||+.++.++                                                  
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki  127 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI  127 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhh
Confidence            457899999999999999999999998876                                                  


Q ss_pred             -------------------------------------cCceEEEEe----ecCccccchHHHhcCCcccEEecccCCHHH
Q 048723           60 -------------------------------------VGEKGIVFT----TNYVDKLDPALIRRGRMDKRIEMSYCCFEA   98 (236)
Q Consensus        60 -------------------------------------~~~~~vi~t----tN~~~~ld~al~r~gR~d~~i~~~~p~~~~   98 (236)
                                                           ..+++++++    +|.+..++|+++.  ||+..+.+..|+...
T Consensus       128 ~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~~  205 (309)
T d1ofha_         128 CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAAD  205 (309)
T ss_dssp             SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred             hhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhhh--hhheeeeccCCCHHH
Confidence                                                 113456665    4788889999986  999999999999999


Q ss_pred             HHHHHHHhh
Q 048723           99 FMVLAKSYL  107 (236)
Q Consensus        99 ~~~i~~~~l  107 (236)
                      +..|+..+.
T Consensus       206 ~~~Il~~~~  214 (309)
T d1ofha_         206 FERILTEPH  214 (309)
T ss_dssp             HHHHHHSST
T ss_pred             HHHHHHHHH
Confidence            999987654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2e-12  Score=107.08  Aligned_cols=58  Identities=33%  Similarity=0.511  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHHhhhChh----HHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723            2 ETKKKEEIKKDLKKFSEGKE----YCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus         2 ~~~~k~~i~~~v~~~~~~~~----~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +++.+++|.+.+..+.....    .....+....++++|+|||||||||++++||+.++.++
T Consensus        19 ~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~   80 (253)
T d1sxja2          19 NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI   80 (253)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            45667777776665532221    12233445566799999999999999999999998776

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.37  E-value=2.3e-15  Score=131.13  Aligned_cols=88  Identities=13%  Similarity=0.095  Sum_probs=71.5

Q ss_pred             hhHHhhhCCCCCcceE-EECCCCCChHHHHHHHHhhcC--Ccc-------------------------------------
Q 048723           20 KEYCAKIGKAWKRGYL-LYGPPGTGKSTMIAAMANFLN--YDL-------------------------------------   59 (236)
Q Consensus        20 ~~~~~~~~~~~~rg~l-L~GPpGtGKTtlakaia~~l~--~~~-------------------------------------   59 (236)
                      +.++..++...++|++ |+||||||||+++++||.+++  .+|                                     
T Consensus       111 ~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DE  190 (321)
T d1w44a_         111 PVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDS  190 (321)
T ss_dssp             CEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred             hHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeeh
Confidence            4566667777788855 589999999999999999986  334                                     


Q ss_pred             ---------------------------------cCceEEEEeecCc---cccchHHHhcCCcccEEecccCCHHHHHHHH
Q 048723           60 ---------------------------------VGEKGIVFTTNYV---DKLDPALIRRGRMDKRIEMSYCCFEAFMVLA  103 (236)
Q Consensus        60 ---------------------------------~~~~~vi~ttN~~---~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~  103 (236)
                                                       ..+++||++||+.   +.||++++|+||||+.+++++|+.+.+..|+
T Consensus       191 id~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il  270 (321)
T d1w44a_         191 LKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVL  270 (321)
T ss_dssp             CTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEEE
T ss_pred             hhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccchhhhhhccCcccceeecCCCChHHHHHHH
Confidence                                             2268999999963   4467788899999999999999999988887


Q ss_pred             HHhh
Q 048723          104 KSYL  107 (236)
Q Consensus       104 ~~~l  107 (236)
                      +.|.
T Consensus       271 ~~~~  274 (321)
T d1w44a_         271 TRTG  274 (321)
T ss_dssp             EECB
T ss_pred             HHhc
Confidence            7664

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.26  E-value=1.1e-11  Score=109.40  Aligned_cols=71  Identities=23%  Similarity=0.203  Sum_probs=57.8

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------------
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------------------------------   59 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~-----------------------------------------------   59 (236)
                      |.+.++++||+||||||||+++++||+.++.++                                               
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~Dei  229 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNL  229 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehH
Confidence            677788899999999999999999999999777                                               


Q ss_pred             -------cC-----------------ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHH
Q 048723           60 -------VG-----------------EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFM  100 (236)
Q Consensus        60 -------~~-----------------~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~  100 (236)
                             .|                 ...+|+|||+   ++.+++|++||++.+++..|....+.
T Consensus       230 D~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~---~~~~~~r~~Rf~~~i~~~~~~~~~~~  291 (362)
T d1svma_         230 DNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHC  291 (362)
T ss_dssp             HTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECS---CCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred             hhcccccCCcchhhhhhhhhchhhhccCCceeeccc---ccccccccccCceEEeecCCCcHHHH
Confidence                   00                 1137889995   45667889999999999888766554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.19  E-value=9.2e-11  Score=95.87  Aligned_cols=74  Identities=22%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~-----------------------------------------------------   59 (236)
                      .++|+|||||||||++++||+.+....                                                     
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~  126 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ  126 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccchhHHHHHHHHHHhhhhccCCCceEEeehhhhhcchhHH
Confidence            499999999999999999999864322                                                     


Q ss_pred             ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhcc
Q 048723           60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLDI  109 (236)
Q Consensus        60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~~  109 (236)
                                ...+.+|+++|+...++++++.  |+ ..+.+..|+......+++..+..
T Consensus       127 ~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~~~~  183 (231)
T d1iqpa2         127 QALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAEN  183 (231)
T ss_dssp             HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH--TE-EEEECCCCCHHHHHHHHHHHHHT
T ss_pred             HHHhhhcccCCcceEEEeccCChhhchHhHhC--cc-ccccccccchhhHHHHHHHHHHH
Confidence                      2367899999999999999988  76 66899999999888888776543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=1.8e-10  Score=94.73  Aligned_cols=43  Identities=2%  Similarity=0.002  Sum_probs=36.6

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ...+|++||+++.++++++.  |+ ..|.|+.|+.++...++...+
T Consensus       161 ~~~~Il~tn~~~~i~~~l~s--R~-~~i~~~~~~~~~~~~~l~~i~  203 (252)
T d1sxje2         161 NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV  203 (252)
T ss_dssp             TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred             cccceeeeccccchhhhhhc--ch-heeeecccchhhHHHHHHHHH
Confidence            56789999999999999988  77 688999999998888777654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.09  E-value=8.9e-10  Score=90.50  Aligned_cols=46  Identities=13%  Similarity=0.039  Sum_probs=33.4

Q ss_pred             ceEEEEeecCc---cccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           62 EKGIVFTTNYV---DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        62 ~~~vi~ttN~~---~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                      ...+|+++|..   +.+++++.++. ....|.|+.++.+++..|+..++.
T Consensus       158 ~~~~i~~~~~~~~~~~~~~~~~~r~-~~~~i~~~~~~~~e~~~il~~r~~  206 (276)
T d1fnna2         158 RIALVIVGHNDAVLNNLDPSTRGIM-GKYVIRFSPYTKDQIFDILLDRAK  206 (276)
T ss_dssp             CEEEEEEESSTHHHHTSCHHHHHHH-TTCEEECCCCBHHHHHHHHHHHHH
T ss_pred             ceEEeecCCchhhhhhcchhhhhhh-cchhccccchhHHHHHHHHHHHHH
Confidence            56778888764   46778777632 235688999999999988887653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=2.4e-10  Score=93.15  Aligned_cols=72  Identities=19%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~-----------------------------------------------------   59 (236)
                      .++|+||||+||||+++.||+.+....                                                     
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~  117 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA  117 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehhhHHHHHHHhhccCCCcceEEEEEecccccchhH
Confidence            499999999999999999999876443                                                     


Q ss_pred             -----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           60 -----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        60 -----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                                 .....++++++..+.+++++++  |. ..|.|..|+.++...++...+
T Consensus       118 ~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~s--r~-~~i~~~~~~~~~i~~~l~~i~  173 (224)
T d1sxjb2         118 QQALRRTMELYSNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQII  173 (224)
T ss_dssp             HHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHhhhccccccceeeeeccCchhhhhhHHHH--HH-HHhhhcccchhhhHHHHHHHH
Confidence                       2367888999999999999988  65 679999999998887776654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=5.7e-10  Score=92.09  Aligned_cols=44  Identities=14%  Similarity=0.116  Sum_probs=35.6

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ....+|++||+++.+.+++++  |. ..+.|+.|+.++...++....
T Consensus       144 ~~~~~il~tn~~~~i~~~i~S--Rc-~~i~~~~~~~~~i~~~l~~i~  187 (239)
T d1njfa_         144 EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHIL  187 (239)
T ss_dssp             TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCccccChhHhh--hh-cccccccCcHHHhhhHHHHHH
Confidence            467899999999999999988  55 678999999887776665544

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=9.3e-10  Score=89.39  Aligned_cols=73  Identities=32%  Similarity=0.423  Sum_probs=59.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc-----------------------------------------------------
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL-----------------------------------------------------   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~-----------------------------------------------------   59 (236)
                      .+||+|||||||||++++||+.+....                                                     
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~  116 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQ  116 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhccccccccCCCeEEEEEeccccchhhHH
Confidence            499999999999999999999864221                                                     


Q ss_pred             ----------cCceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhhc
Q 048723           60 ----------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYLD  108 (236)
Q Consensus        60 ----------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l~  108 (236)
                                ....++++++|.+..+++++++  |. ..+.|..|+.+....++...+.
T Consensus       117 ~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~s--r~-~~i~~~~~~~~~i~~~l~~I~~  172 (227)
T d1sxjc2         117 NALRRVIERYTKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLV  172 (227)
T ss_dssp             HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccceeeccccCcHHHhHHHHHH--HH-hhhccccccccccccccccccc
Confidence                      2377888999999999999988  55 6788999999888877776553

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=9.7e-11  Score=97.10  Aligned_cols=59  Identities=20%  Similarity=0.323  Sum_probs=52.0

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      |+....+++++|.+++|  +.|+||+|||||||+++|++.+.++   .|-|.+...++..+++.
T Consensus        10 yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~   70 (232)
T d2awna2          10 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPA   70 (232)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGG
T ss_pred             ECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchh
Confidence            45566788999999999  8899999999999999999999988   88889988888888764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.98  E-value=2.2e-10  Score=94.75  Aligned_cols=51  Identities=22%  Similarity=0.411  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723            4 KKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus         4 ~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +.+..+.+.+..+....     .+...++++||+|||||||||++++||+.++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~-----~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~   60 (273)
T d1gvnb_          10 QFENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV   60 (273)
T ss_dssp             HHHHHHHHHHHHHHTTC-----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHhcc-----cCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcce
Confidence            45555555555444332     2566788899999999999999999999998776

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=4.4e-09  Score=85.11  Aligned_cols=44  Identities=11%  Similarity=-0.029  Sum_probs=36.7

Q ss_pred             CceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           61 GEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        61 ~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ..+.||++||+++.+.|.++.  |. ..|.|..|+.+....+++...
T Consensus       137 ~~~~fIl~t~~~~~ll~tI~S--Rc-~~i~~~~~~~~~~~~~L~~~~  180 (207)
T d1a5ta2         137 AETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV  180 (207)
T ss_dssp             TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC
T ss_pred             ccceeeeeecChhhhhhhhcc--ee-EEEecCCCCHHHHHHHHHHcC
Confidence            378999999999999999988  65 789999999888877776544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.92  E-value=1.1e-10  Score=97.05  Aligned_cols=59  Identities=29%  Similarity=0.378  Sum_probs=51.8

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchH
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPA   78 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~a   78 (236)
                      |.+...+++++|.+++|  +.|+||+|||||||+++|++.+.++   .|-|++.+.++..+++.
T Consensus        16 yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~   76 (239)
T d1v43a3          16 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK   76 (239)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred             ECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcc
Confidence            45566788999999999  8899999999999999999999988   78888888888888874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=2.4e-09  Score=86.99  Aligned_cols=43  Identities=9%  Similarity=0.053  Sum_probs=35.4

Q ss_pred             ceEEEEeecCccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ...++++++..+.+++++++  |+ ..|.|..|+.+....+++..+
T Consensus       138 ~~~~i~~~~~~~~~~~~l~s--r~-~~i~f~~~~~~~~~~~L~~i~  180 (237)
T d1sxjd2         138 VTRFCLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFIS  180 (237)
T ss_dssp             TEEEEEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccc--hh-hhhccccccccccchhhhhhh
Confidence            56778888999999999988  66 678999999998887776654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.87  E-value=3.3e-10  Score=94.31  Aligned_cols=120  Identities=10%  Similarity=0.150  Sum_probs=73.6

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH---hcCCcccEEec
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI---RRGRMDKRIEM   91 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~---r~gR~d~~i~~   91 (236)
                      |+....+++++|.+++|  +.|+||+|||||||+++|++.+.++   .|-|.+...++...++..+   ++.++.++++-
T Consensus        13 yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~   89 (240)
T d1g2912          13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS   89 (240)
T ss_dssp             ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred             ECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccc
Confidence            44556788999999999  8899999999999999999999988   7878877766655554332   11134333321


Q ss_pred             ----ccCCHHHHHHHHHHhhcccchhhHHHHHHHHHcC-----------CCCHHHHHHHHccc
Q 048723           92 ----SYCCFEAFMVLAKSYLDIESHAFFAEINSLLAET-----------NMASADVAENLMPK  139 (236)
Q Consensus        92 ----~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~~~-----------gls~a~i~~~l~~~  139 (236)
                          +..+..+--.+.....+........++..+++..           .+|+++-+...+++
T Consensus        90 ~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAr  152 (240)
T d1g2912          90 YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR  152 (240)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             hhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence                1112222222222233333343444455555432           46888877666653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=5.7e-10  Score=92.83  Aligned_cols=116  Identities=14%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhc--CCcccEEecc--cC
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRR--GRMDKRIEMS--YC   94 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~--gR~d~~i~~~--~p   94 (236)
                      ..+++++|.+.+|  +.|+||+|||||||+++|++.+.++   .|-|.+...++..+++.-++.  .++.++++-+  +|
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~   95 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS   95 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCT
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhccccccccccccCC
Confidence            3588999999999  8899999999999999999999888   788888888888877644321  1343333211  22


Q ss_pred             CHHHHHHHH--HHhhcccchhhHHHHHHHHHcC-----------CCCHHHHHHHHccc
Q 048723           95 CFEAFMVLA--KSYLDIESHAFFAEINSLLAET-----------NMASADVAENLMPK  139 (236)
Q Consensus        95 ~~~~~~~i~--~~~l~~~~~~~~~~i~~ll~~~-----------gls~a~i~~~l~~~  139 (236)
                      ...-+..+.  -.+.+.........+..+++..           .+|+++.+...+++
T Consensus        96 ~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAr  153 (240)
T d3dhwc1          96 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR  153 (240)
T ss_dssp             TSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhh
Confidence            222222222  1223444444445555555532           56888877766653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.83  E-value=7.2e-10  Score=93.19  Aligned_cols=56  Identities=20%  Similarity=0.325  Sum_probs=46.8

Q ss_pred             hhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcccc
Q 048723           17 SEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKL   75 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~l   75 (236)
                      |+....+++++|.+.+|  +.|+||+|||||||+++|++.+.++   .|-|++.+..+..+
T Consensus        12 yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~   69 (258)
T d1b0ua_          12 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLV   69 (258)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEE
T ss_pred             ECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccC
Confidence            45566789999999999  8899999999999999999999887   77777766555443

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.83  E-value=5.6e-10  Score=92.24  Aligned_cols=62  Identities=21%  Similarity=0.379  Sum_probs=52.8

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                      .+++++|.+.+|  +.|+||+|||||||+++|++.+.++   .|-|.+.+.++..+++. .|  ++.+++
T Consensus        15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~-~r--~ig~v~   78 (229)
T d3d31a2          15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE-KH--DIAFVY   78 (229)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHH-HH--TCEEEC
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchh-Hh--cceeec
Confidence            578899999999  8899999999999999999999988   88888888888888875 33  454444

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=6.6e-10  Score=92.37  Aligned_cols=118  Identities=14%  Similarity=0.120  Sum_probs=74.1

Q ss_pred             hhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEec--
Q 048723           16 FSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEM--   91 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~--   91 (236)
                      .|+...++++++|.+..|  +.|+||+|+|||||+++|++.+.++   .|-+.+...++...+..+.+  ++.+..+.  
T Consensus        11 ~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~--~i~~vpq~~~   85 (238)
T d1vpla_          11 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRK--LISYLPEEAG   85 (238)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHT--TEEEECTTCC
T ss_pred             EECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHh--hEeEeeeccc
Confidence            356667899999999999  7799999999999999999999988   77777777666555555444  44332221  


Q ss_pred             --ccCCHHHHHHHHHHhhcccchhhHHHHHHHHH-----------cCCCCHHHHHHHHcc
Q 048723           92 --SYCCFEAFMVLAKSYLDIESHAFFAEINSLLA-----------ETNMASADVAENLMP  138 (236)
Q Consensus        92 --~~p~~~~~~~i~~~~l~~~~~~~~~~i~~ll~-----------~~gls~a~i~~~l~~  138 (236)
                        +..+..+...+...+...........+..+++           -..+|+++.+...++
T Consensus        86 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA  145 (238)
T d1vpla_          86 AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA  145 (238)
T ss_dssp             CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHH
Confidence              11222222223333334333333333444332           236788887766664

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.8e-08  Score=86.56  Aligned_cols=72  Identities=22%  Similarity=0.403  Sum_probs=60.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc------------------------------------------------------
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL------------------------------------------------------   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~------------------------------------------------------   59 (236)
                      +||+||||+|||.|+++||..++.++                                                      
T Consensus        55 ~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~  134 (315)
T d1r6bx3          55 FLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH  134 (315)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC
T ss_pred             EEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhCccchhhhccccccc
Confidence            89999999999999999999998776                                                      


Q ss_pred             -------------------------cCceEEEEeecCc-------------------------cccchHHHhcCCcccEE
Q 048723           60 -------------------------VGEKGIVFTTNYV-------------------------DKLDPALIRRGRMDKRI   89 (236)
Q Consensus        60 -------------------------~~~~~vi~ttN~~-------------------------~~ld~al~r~gR~d~~i   89 (236)
                                               ..+.++|+|+|--                         ..++|.++.  |+|.++
T Consensus       135 ~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~ii  212 (315)
T d1r6bx3         135 PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNII  212 (315)
T ss_dssp             HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEE
T ss_pred             chHhhhhHHhhccceecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHh--hhhhhh
Confidence                                     2267888999832                         236778877  999999


Q ss_pred             ecccCCHHHHHHHHHHhh
Q 048723           90 EMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        90 ~~~~p~~~~~~~i~~~~l  107 (236)
                      .|...+.+....|+..++
T Consensus       213 ~f~~l~~~~~~~I~~~~l  230 (315)
T d1r6bx3         213 WFDHLSTDVIHQVVDKFI  230 (315)
T ss_dssp             ECCCCCHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHH
Confidence            999999999988887765

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.78  E-value=7.5e-10  Score=91.54  Aligned_cols=56  Identities=23%  Similarity=0.337  Sum_probs=49.7

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHH
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALI   80 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~   80 (236)
                      .+++++|.+.+|  +.|+||+|||||||+++|++...++   .|.|.+...++..+++.-+
T Consensus        20 al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~   77 (230)
T d1l2ta_          20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL   77 (230)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhc
Confidence            578899999999  8899999999999999999999888   8888888888888887654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.78  E-value=7.4e-09  Score=85.29  Aligned_cols=44  Identities=9%  Similarity=0.164  Sum_probs=31.0

Q ss_pred             ceEEEEeecCcccc------chHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNYVDKL------DPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~~~~l------d~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      ...+|+.+|.++..      ++.+.+  |++..+.|+.++.++...|++..+
T Consensus       173 ~~~~i~i~~~~~~~~~~~~~~~~~~~--r~~~~i~f~~y~~~el~~Il~~r~  222 (287)
T d1w5sa2         173 RIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRA  222 (287)
T ss_dssp             BEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred             ceeEEeecccHHHHHHHHhhccchhc--ccceeeeccCCcHHHHHHHHhhhH
Confidence            44556655554432      345555  788999999999999998888654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.77  E-value=1.9e-09  Score=89.59  Aligned_cols=63  Identities=22%  Similarity=0.345  Sum_probs=55.4

Q ss_pred             hhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           16 FSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .|.....+++++|.+++|  +.|+||+|+|||||+++|++.+.++   .|-|.+.+.++...++..++
T Consensus        15 ~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~   79 (240)
T d1ji0a_          15 YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVIN   79 (240)
T ss_dssp             EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHH
T ss_pred             EECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHH
Confidence            345566789999999999  8899999999999999999999988   88899999888888887765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.76  E-value=1.5e-09  Score=90.12  Aligned_cols=109  Identities=14%  Similarity=0.240  Sum_probs=68.4

Q ss_pred             hhCCCCCcc-eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEEecc--cCCHHHHHH
Q 048723           25 KIGKAWKRG-YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMS--YCCFEAFMV  101 (236)
Q Consensus        25 ~~~~~~~rg-~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~--~p~~~~~~~  101 (236)
                      +++|...+. +.|+||+|||||||+++|++.+.++   .|.|.+...++..+++. .|  ++.++++-+  +|...-+..
T Consensus        17 ~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~-~r--~ig~v~Q~~~l~~~ltV~en   90 (240)
T d2onka1          17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPE-RR--GIGFVPQDYALFPHLSVYRN   90 (240)
T ss_dssp             EEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTT-TS--CCBCCCSSCCCCTTSCHHHH
T ss_pred             EEEEEeCCEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHH-Hc--CceeeccchhhcccchhhHh
Confidence            466666544 6689999999999999999999988   88999999888888875 23  555444322  233222332


Q ss_pred             HHHHhhcccchhhHHHHHHHHHcC-----------CCCHHHHHHHHccc
Q 048723          102 LAKSYLDIESHAFFAEINSLLAET-----------NMASADVAENLMPK  139 (236)
Q Consensus       102 i~~~~l~~~~~~~~~~i~~ll~~~-----------gls~a~i~~~l~~~  139 (236)
                      +.-.............+.++++..           .+|+++-+...+++
T Consensus        91 l~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAr  139 (240)
T d2onka1          91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALAR  139 (240)
T ss_dssp             HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHH
T ss_pred             hhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHH
Confidence            221111122222334566666644           45788777666653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.76  E-value=8.2e-10  Score=92.57  Aligned_cols=58  Identities=26%  Similarity=0.363  Sum_probs=52.3

Q ss_pred             hHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           21 EYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        21 ~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .++.+++|.+++|  +.|+||+|||||||+++|++.+.+.   .|-|.+...++..+++.-+|
T Consensus        29 ~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r   88 (253)
T d3b60a1          29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLR   88 (253)
T ss_dssp             CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHH
T ss_pred             ceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhh
Confidence            4788999999999  8999999999999999999999888   88899888888888887776

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=7.8e-10  Score=92.08  Aligned_cols=59  Identities=22%  Similarity=0.340  Sum_probs=52.9

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      +.++.+++|.+++|  +.|+||+|||||||+++|++.+.+.   .|-|.+.+.++..+++.-+|
T Consensus        16 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr   76 (241)
T d2pmka1          16 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLR   76 (241)
T ss_dssp             CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHH
T ss_pred             cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhh
Confidence            44789999999999  8999999999999999999999888   88888888888889887776

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.72  E-value=1.1e-09  Score=91.22  Aligned_cols=116  Identities=13%  Similarity=0.216  Sum_probs=71.1

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh--cCCcccEEecc--c
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR--RGRMDKRIEMS--Y   93 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r--~gR~d~~i~~~--~   93 (236)
                      ...++++++.+.+|  +.|+||+|||||||+++|++...++   .|-|++....+...++..++  +.++.++++.+  +
T Consensus        18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~   94 (242)
T d1oxxk2          18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY   94 (242)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred             EEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEecccccc
Confidence            34588999999999  8899999999999999999999888   77777766555444332221  11465554332  2


Q ss_pred             CCHHHHHHHHH--HhhcccchhhHHHHHHHHHcC-----------CCCHHHHHHHHcc
Q 048723           94 CCFEAFMVLAK--SYLDIESHAFFAEINSLLAET-----------NMASADVAENLMP  138 (236)
Q Consensus        94 p~~~~~~~i~~--~~l~~~~~~~~~~i~~ll~~~-----------gls~a~i~~~l~~  138 (236)
                      |....+..+..  .+.+........++..+++..           .+|+++-+...++
T Consensus        95 p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA  152 (242)
T d1oxxk2          95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (242)
T ss_dssp             TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             ccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHH
Confidence            33333333321  122233333344555555544           4577776666554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.68  E-value=8.1e-10  Score=92.00  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=54.8

Q ss_pred             ChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhcCCcccEE
Q 048723           19 GKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRRGRMDKRI   89 (236)
Q Consensus        19 ~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~gR~d~~i   89 (236)
                      .+.++++++|.+++|  +.|+||+|||||||+++|++.+.+.   .|-|.+...++..+++..+|. ++.++.
T Consensus        14 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~-~i~~v~   82 (242)
T d1mv5a_          14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRS-QIGFVS   82 (242)
T ss_dssp             SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTT-TCCEEC
T ss_pred             CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHh-heEEEc
Confidence            345789999999999  8899999999999999999999988   788888888888887665553 454333

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.66  E-value=5.7e-09  Score=84.31  Aligned_cols=51  Identities=22%  Similarity=0.418  Sum_probs=43.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCcc
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVD   73 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~   73 (236)
                      ..+++++++.+++|  +.|+||+|||||||+++|++.+.+.   .|-|.+.+.++.
T Consensus        14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~   66 (200)
T d1sgwa_          14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT   66 (200)
T ss_dssp             SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG
T ss_pred             CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehh
Confidence            35789999999999  8899999999999999999999888   777777655443

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.6e-09  Score=89.29  Aligned_cols=57  Identities=19%  Similarity=0.316  Sum_probs=51.6

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ++++++|.+++|  +.|+||+|||||||+++|++.+.+.   .|-|.+...++..+++..+|
T Consensus        29 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r   87 (251)
T d1jj7a_          29 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLH   87 (251)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHH
T ss_pred             eEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHH
Confidence            689999999999  8999999999999999999999988   88888888888888877665

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.58  E-value=4.6e-09  Score=88.01  Aligned_cols=59  Identities=20%  Similarity=0.343  Sum_probs=52.7

Q ss_pred             hhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           20 KEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        20 ~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      ..++++++|.+++|  +.|+||+|||||||++.|++.+.+.   .|.|.+...++..+++..+|
T Consensus        31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr   91 (255)
T d2hyda1          31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLR   91 (255)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHH
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhh
Confidence            34789999999999  8999999999999999999999988   88888888888888887776

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.57  E-value=7.7e-09  Score=86.50  Aligned_cols=63  Identities=27%  Similarity=0.475  Sum_probs=55.5

Q ss_pred             hhhChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           16 FSEGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        16 ~~~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .|.....+++++|.+++|  +.|+||+|+|||||+++|++.+.++   .|-|.+...++...+|..++
T Consensus        13 ~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~   77 (254)
T d1g6ha_          13 YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELY   77 (254)
T ss_dssp             EETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHH
T ss_pred             EECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHH
Confidence            455667889999999999  8899999999999999999999988   88899988888888887665

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.57  E-value=7.3e-08  Score=78.20  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=21.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .++|+||||||||.|++++++.+.
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhc
Confidence            489999999999999999998863

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=1.6e-07  Score=80.51  Aligned_cols=44  Identities=18%  Similarity=0.304  Sum_probs=36.5

Q ss_pred             ceEEEEeecC--------------------------ccccchHHHhcCCcccEEecccCCHHHHHHHHHHhh
Q 048723           62 EKGIVFTTNY--------------------------VDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        62 ~~~vi~ttN~--------------------------~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      +.++|+|||-                          ...+.|.++.  |+|.++.|...+.+....|+...+
T Consensus       166 ~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~Ii~F~~L~~~~~~~I~~~~l  235 (315)
T d1qvra3         166 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQL  235 (315)
T ss_dssp             TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred             ceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHh--cCCeeeeccchhhhhhHHHHHHHH
Confidence            7899999984                          2458888988  999999999999988888877654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.48  E-value=1.4e-07  Score=80.94  Aligned_cols=39  Identities=21%  Similarity=0.177  Sum_probs=29.1

Q ss_pred             ceEEEEeecCcc-ccchHHHhcCCcccEEecccCC-HHHHHHH
Q 048723           62 EKGIVFTTNYVD-KLDPALIRRGRMDKRIEMSYCC-FEAFMVL  102 (236)
Q Consensus        62 ~~~vi~ttN~~~-~ld~al~r~gR~d~~i~~~~p~-~~~~~~i  102 (236)
                      ..++++|+|..+ .+++++++  ||+..+.+.+|. ...+..+
T Consensus       170 ~f~liaa~Np~~~~l~~~llD--Rf~~~i~v~~~~~~~~~~~~  210 (333)
T d1g8pa_         170 RFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV  210 (333)
T ss_dssp             CEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred             CEEEEEecCccccccccchhh--hhcceeeccCcchhhHHHHH
Confidence            457778888765 48999999  999999998874 4444433

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=5.2e-08  Score=73.28  Aligned_cols=29  Identities=45%  Similarity=0.676  Sum_probs=26.2

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ++.++|+|||||||||+++.||..++.++
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~~~~   30 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF   30 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            35689999999999999999999998885

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=3.1e-08  Score=81.63  Aligned_cols=56  Identities=25%  Similarity=0.393  Sum_probs=45.5

Q ss_pred             HHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh
Q 048723           22 YCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR   81 (236)
Q Consensus        22 ~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r   81 (236)
                      .+++++|.+++|  +.|+||+|+|||||+++|++.. +.   .+-+.+...++...++.-++
T Consensus        14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~   71 (231)
T d1l7vc_          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLA   71 (231)
T ss_dssp             TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHH
T ss_pred             eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHH
Confidence            467788999999  8899999999999999999964 34   67777787777777765554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.27  E-value=7.1e-07  Score=68.17  Aligned_cols=26  Identities=46%  Similarity=0.655  Sum_probs=24.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ++|.|||||||||+++.|+..++.++
T Consensus         7 I~l~G~~GsGKSTia~~La~~lg~~~   32 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANLPGVPK   32 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTCSSSCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            78999999999999999999988765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=98.26  E-value=2.9e-06  Score=73.92  Aligned_cols=29  Identities=38%  Similarity=0.687  Sum_probs=26.2

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +..+||+||+|||||.|+++||..++.+|
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~~   96 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIPI   96 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcccce
Confidence            44599999999999999999999998777

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.24  E-value=1.9e-07  Score=71.52  Aligned_cols=28  Identities=21%  Similarity=0.408  Sum_probs=25.2

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+.++|+||||||||||++.||..++.+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~   34 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTT   34 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3459999999999999999999999866

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=6.8e-07  Score=68.17  Aligned_cols=26  Identities=35%  Similarity=0.622  Sum_probs=24.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ++|+|||||||||+++.|+..++..+
T Consensus         9 ivl~G~~GsGKsT~a~~La~~l~~~~   34 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQLHAAF   34 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            78899999999999999999998765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.23  E-value=5.8e-07  Score=80.51  Aligned_cols=29  Identities=28%  Similarity=0.578  Sum_probs=27.2

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +.++||+||+|||||.|++.||+.++.||
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPF   77 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPF   77 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            55799999999999999999999999996

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.21  E-value=2.8e-07  Score=70.17  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=24.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .++|+|||||||||+++.||..++.++
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~   32 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKY   32 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcE
Confidence            488999999999999999999998774

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=1.4e-07  Score=79.82  Aligned_cols=47  Identities=21%  Similarity=0.328  Sum_probs=39.8

Q ss_pred             hChhHHhhhCCCCCcc--eEEECCCCCChHHHHHHHHhhcCCcccCceEEEE
Q 048723           18 EGKEYCAKIGKAWKRG--YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVF   67 (236)
Q Consensus        18 ~~~~~~~~~~~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~   67 (236)
                      ....++++++|.+++|  +.|+||+|||||||+++|++.+.+.   .|.|..
T Consensus        47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~   95 (281)
T d1r0wa_          47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKH   95 (281)
T ss_dssp             TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEC
T ss_pred             CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEE
Confidence            3445789999999999  8899999999999999999999887   555443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.18  E-value=3.9e-06  Score=67.99  Aligned_cols=43  Identities=26%  Similarity=0.180  Sum_probs=30.2

Q ss_pred             hhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           17 SEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        17 ~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +++...+..+.-...+.++|+||+|+|||+|++.++..++..+
T Consensus        15 ~GR~~el~~l~~~~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          15 FDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             CCCHHHHHHHHHTCSSEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             CChHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            3333333333333456699999999999999999998876553

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.9e-06  Score=72.12  Aligned_cols=44  Identities=23%  Similarity=0.345  Sum_probs=33.5

Q ss_pred             cCceEEEEeecCc-----cccchHHHhcCCcccEEecccCCHHHHHHHHHHh
Q 048723           60 VGEKGIVFTTNYV-----DKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKSY  106 (236)
Q Consensus        60 ~~~~~vi~ttN~~-----~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~~  106 (236)
                      .|+..+|++|..-     ..-|++|.|  || ..|.+.-|+.++-..|+..+
T Consensus       145 rg~i~vIgatT~eey~~~~e~d~al~r--rF-~~I~V~Eps~e~t~~IL~~~  193 (268)
T d1r6bx2         145 SGKIRVIGSTTYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGL  193 (268)
T ss_dssp             SCCCEEEEEECHHHHHCCCCCTTSSGG--GE-EEEECCCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEeCCHHHHHHHHhhcHHHHh--hh-cccccCCCCHHHHHHHHHHh
Confidence            4578888888532     345889988  99 78999999998888777653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.15  E-value=4.9e-07  Score=69.56  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=25.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .++|+|||||||||+++.||..++++|
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~   28 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVF   28 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            488999999999999999999999885

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.14  E-value=5.8e-07  Score=69.10  Aligned_cols=25  Identities=28%  Similarity=0.594  Sum_probs=23.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+||||||||||+++|++.+.++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            7899999999999999999999876

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=7.2e-07  Score=68.58  Aligned_cols=27  Identities=41%  Similarity=0.541  Sum_probs=24.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .++|+|||||||||+++.||..++++|
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~f   29 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGL   29 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            378889999999999999999999884

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.11  E-value=7.2e-07  Score=68.92  Aligned_cols=28  Identities=25%  Similarity=0.473  Sum_probs=25.4

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +.++|+|||||||||+++.||..++++|
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~   30 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEF   30 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            4588999999999999999999999884

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=2e-06  Score=68.77  Aligned_cols=62  Identities=16%  Similarity=0.135  Sum_probs=49.7

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCC------cc---------------------------------------------
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNY------DL---------------------------------------------   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~------~~---------------------------------------------   59 (236)
                      ...++|+||||||||+++..+++....      ++                                             
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~   94 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ   94 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHhhCcccCCCEEEEEeCccccchh
Confidence            445999999999999999999987631      22                                             


Q ss_pred             ------------cCceEEEEeecCccccchHHHhcCCcccEEecccCC
Q 048723           60 ------------VGEKGIVFTTNYVDKLDPALIRRGRMDKRIEMSYCC   95 (236)
Q Consensus        60 ------------~~~~~vi~ttN~~~~ld~al~r~gR~d~~i~~~~p~   95 (236)
                                  ....++|++||+++.+.|.++.  |. ..+.++.|.
T Consensus        95 aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~S--RC-~~i~~~~p~  139 (198)
T d2gnoa2          95 AANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS--RV-FRVVVNVPK  139 (198)
T ss_dssp             HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCH
T ss_pred             hhhHHHHHHhCCCCCceeeeccCChhhCHHHHhc--ce-EEEeCCCch
Confidence                        3478999999999999999998  43 557776664

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=7.7e-07  Score=67.93  Aligned_cols=25  Identities=44%  Similarity=0.804  Sum_probs=23.0

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      |.++|+||||||||||++.|+..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5689999999999999999999984

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.08  E-value=8.8e-07  Score=67.47  Aligned_cols=28  Identities=29%  Similarity=0.408  Sum_probs=24.1

Q ss_pred             Ccc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+|  ++|+|+|||||||++++||..|+..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~   33 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ   33 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            456  7789999999999999999998644

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.07  E-value=8.9e-07  Score=67.02  Aligned_cols=26  Identities=38%  Similarity=0.611  Sum_probs=23.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+|||||||||+++.|+..++..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~~~   29 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLDNS   29 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            48899999999999999999988644

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.05  E-value=1.2e-06  Score=66.70  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=24.0

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +-++|+|||||||||+++.|+..++..
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~   30 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEP   30 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            348889999999999999999999755

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.04  E-value=1.2e-06  Score=66.72  Aligned_cols=24  Identities=42%  Similarity=0.641  Sum_probs=22.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++|+|||||||||+++.|+..++.
T Consensus         8 I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           8 ILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999998863

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.03  E-value=1.1e-06  Score=68.74  Aligned_cols=25  Identities=36%  Similarity=0.563  Sum_probs=23.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.||..++..
T Consensus         6 iil~G~pGSGKsT~a~~La~~~g~~   30 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNFCVC   30 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCe
Confidence            7889999999999999999998766

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=3.8e-06  Score=67.03  Aligned_cols=25  Identities=32%  Similarity=0.663  Sum_probs=22.1

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.+++|+||||+|||+++..||..+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHH
Confidence            4569999999999999999999855

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.93  E-value=2.3e-06  Score=66.04  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=23.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|||||||||+++.||..++..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~~   27 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGIP   27 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCc
Confidence            7899999999999999999999876

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=7.4e-07  Score=69.32  Aligned_cols=25  Identities=32%  Similarity=0.508  Sum_probs=22.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|+|||||||+++.|+..++..
T Consensus        22 I~L~G~pGSGKTTiAk~La~~l~~~   46 (195)
T d1x6va3          22 VWLTGLSGAGKTTVSMALEEYLVCH   46 (195)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhc
Confidence            6689999999999999999998765

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.88  E-value=2.8e-06  Score=66.40  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=24.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .++|.|||||||||+++.|+..++..+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~~~~   31 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQLAH   31 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcE
Confidence            489999999999999999999998774

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=2.1e-05  Score=61.71  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=22.1

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      .++|+||||+||||+++.|+...+.
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCC
Confidence            4899999999999999999987653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=3.9e-06  Score=65.87  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=23.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.|+..++..
T Consensus        11 I~i~GppGSGKsT~a~~La~~~g~~   35 (196)
T d1ukza_          11 IFVLGGPGAGKGTQCEKLVKDYSFV   35 (196)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCe
Confidence            8889999999999999999998765

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.85  E-value=3.9e-06  Score=65.15  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|||||||||+++.||..++..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~   27 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTP   27 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCc
Confidence            7899999999999999999999776

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.84  E-value=1.5e-05  Score=63.76  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=26.5

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.+-++.++|+|||+||||+++.+|++.++-.
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            45555669999999999999999999998533

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.84  E-value=4.4e-06  Score=62.37  Aligned_cols=23  Identities=35%  Similarity=0.325  Sum_probs=19.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      -++|+|||||||||+++.|+...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            37889999999999999987653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.83  E-value=4.1e-06  Score=65.55  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+|||||||||+++.||..++..
T Consensus         8 iI~i~G~pGSGKsT~a~~La~~~g~~   33 (194)
T d1qf9a_           8 VVFVLGGPGSGKGTQCANIVRDFGWV   33 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            47889999999999999999988755

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.83  E-value=5.3e-06  Score=65.33  Aligned_cols=25  Identities=24%  Similarity=0.561  Sum_probs=23.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|||||||||+++.||..++..
T Consensus         9 IiliG~PGSGKtT~a~~La~~~g~~   33 (189)
T d2ak3a1           9 AAIMGAPGSGKGTVSSRITKHFELK   33 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHBCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCe
Confidence            8899999999999999999998766

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=4.5e-06  Score=64.65  Aligned_cols=25  Identities=44%  Similarity=0.697  Sum_probs=23.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|||||||||+++.|+..++..
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g~~   27 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLGIP   27 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCc
Confidence            7899999999999999999998766

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=4.9e-06  Score=62.89  Aligned_cols=26  Identities=23%  Similarity=0.211  Sum_probs=22.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|+|+||||||||++.|+..+...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            37899999999999999999887533

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=3.3e-06  Score=65.75  Aligned_cols=25  Identities=36%  Similarity=0.434  Sum_probs=21.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|+|||||||+++.++..++..
T Consensus        17 iil~G~pGsGKST~a~~l~~~~~~~   41 (172)
T d1yj5a2          17 VVAVGFPGAGKSTFIQEHLVSAGYV   41 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHTGGGTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCE
Confidence            8889999999999999998766544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.78  E-value=7.6e-05  Score=65.24  Aligned_cols=42  Identities=26%  Similarity=0.376  Sum_probs=29.2

Q ss_pred             cCceEEEEeec-----CccccchHHHhcCCcccEEecccCCHHHHHHHHHH
Q 048723           60 VGEKGIVFTTN-----YVDKLDPALIRRGRMDKRIEMSYCCFEAFMVLAKS  105 (236)
Q Consensus        60 ~~~~~vi~ttN-----~~~~ld~al~r~gR~d~~i~~~~p~~~~~~~i~~~  105 (236)
                      .|...+|++|.     .... |++|.|  || ..|.+.-|+.+.-..|++.
T Consensus       149 rg~~~~I~~tT~~ey~~~e~-d~al~r--rF-~~v~v~ep~~~~~~~il~~  195 (387)
T d1qvra2         149 RGELRLIGATTLDEYREIEK-DPALER--RF-QPVYVDEPTVEETISILRG  195 (387)
T ss_dssp             TTCCCEEEEECHHHHHHHTT-CTTTCS--CC-CCEEECCCCHHHHHHHHHH
T ss_pred             CCCcceeeecCHHHHHHhcc-cHHHHH--hc-ccccCCCCcHHHHHHHHHH
Confidence            34566666663     2233 778888  89 7789999998877777664

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.6e-06  Score=64.67  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=23.6

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|.|||||||||.++.||..++..
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g~~   28 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYGYT   28 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            37899999999999999999998766

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=6.1e-06  Score=64.04  Aligned_cols=25  Identities=32%  Similarity=0.611  Sum_probs=22.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|||||||||+++.||..++..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g~~   29 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFHAA   29 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            7889999999999999999998755

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=5.9e-06  Score=63.86  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|||||||||+++.|+..++..
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~~~   27 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYGIP   27 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            6889999999999999999998776

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=8.4e-06  Score=64.40  Aligned_cols=27  Identities=41%  Similarity=0.635  Sum_probs=24.5

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      -+++.|||||||||+++.||..++..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~   31 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHL   31 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            477789999999999999999998885

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.73  E-value=7.6e-06  Score=64.19  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=23.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|.|||||||||+++.||..++..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~~g~~   35 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQKYGYT   35 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            38889999999999999999988655

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=1.3e-05  Score=62.64  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=28.0

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      |.++|+||||+|||||++.|+......+  ...+..||+.
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~--~~~~~~TTR~   39 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSF--GFSVSSTTRT   39 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTE--EECCEEECSC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcce--eEEEeeccCC
Confidence            4589999999999999999998875432  2333455554

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.67  E-value=4.1e-05  Score=63.70  Aligned_cols=29  Identities=28%  Similarity=0.556  Sum_probs=24.4

Q ss_pred             CCCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723           29 AWKRGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      +....++|+|||+||||+++.+|+..++.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            33444889999999999999999999854

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.63  E-value=1.2e-05  Score=61.31  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=23.2

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      -++|.|||||||||+++.|+..++..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            37899999999999999999988655

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.61  E-value=1.3e-05  Score=63.54  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=23.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      +.+.|||||||||+++.||..++.++
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~~~   31 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGFTY   31 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            45679999999999999999999874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=1.4e-05  Score=62.55  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=22.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|+|+|||||||+++.|+..++..
T Consensus         5 i~l~GlpgsGKSTla~~L~~~l~~~   29 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTRYLNFI   29 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhc
Confidence            7889999999999999999988644

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=3.1e-05  Score=59.95  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=26.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ++|+||||+||||+++.|......-   ...+-.||..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~~~~---~~~~~~tTR~   39 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERIPNL---HFSVSATTRA   39 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTC---EECCCEESSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhCCCC---eEEEEeeccC
Confidence            7899999999999999999876422   2334456643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.41  E-value=4.4e-05  Score=58.73  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.+.||+||||||+++.|+..++..
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhccc
Confidence            5689999999999999999987654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.40  E-value=2.8e-05  Score=59.41  Aligned_cols=25  Identities=36%  Similarity=0.622  Sum_probs=22.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|+|||||||+++.|+..++..
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            6789999999999999999998755

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.9e-05  Score=58.67  Aligned_cols=39  Identities=18%  Similarity=0.240  Sum_probs=28.2

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      ++.++|+||+|+|||||++.|.....-.|  ...+..||+.
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~--~~~v~~TTR~   41 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHPDRF--AYPIPHTTRP   41 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTE--ECCCCEECSC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCcCe--eeccccccCC
Confidence            45589999999999999999987654322  2335566654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00043  Score=54.38  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=22.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.+.||+||||||+++.|+..++..
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhchh
Confidence            5689999999999999999988643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=7.6e-05  Score=59.12  Aligned_cols=29  Identities=28%  Similarity=0.193  Sum_probs=23.4

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      |++..+-++|+||||||||+++..++...
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35555559999999999999999887654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=5.7e-05  Score=58.08  Aligned_cols=30  Identities=20%  Similarity=0.165  Sum_probs=24.1

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      |+++.+-++|+||||+|||+++..+|....
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            344555589999999999999999987654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.24  E-value=9.2e-05  Score=59.21  Aligned_cols=29  Identities=21%  Similarity=0.185  Sum_probs=23.6

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++...-++|+||||||||+++..||....
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~   51 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENAC   51 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            44444489999999999999999988863

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.22  E-value=6.4e-05  Score=57.08  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.++|++|||||||+..|+..|...
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            5689999999999999999987544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=0.00012  Score=58.82  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             hCCCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723           26 IGKAWKRG--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        26 ~~~~~~rg--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +++++.+.  ++|+||+|+||||.+-=||..+
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34444444  7899999999999777777665

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00031  Score=58.02  Aligned_cols=68  Identities=21%  Similarity=0.304  Sum_probs=43.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh-cCC-cccEEecccCCHHHHHHHHHH
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR-RGR-MDKRIEMSYCCFEAFMVLAKS  105 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r-~gR-~d~~i~~~~p~~~~~~~i~~~  105 (236)
                      +.|+||||||||+++-.++.....+  +...+++.|..  .+++...+ .|- .|+++.+...+.++...++..
T Consensus        57 tei~G~~gsGKTtl~l~~~~~~q~~--g~~~vyidtE~--~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~  126 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEH--ALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA  126 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSC--CCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHHHHcC--CCEEEEEcccc--ccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHH
Confidence            7899999999999998888776444  34555565543  45554443 221 356666665566655444443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.15  E-value=0.0069  Score=49.57  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      -+.|+|++|.||||||+.+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3789999999999999999876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00094  Score=56.32  Aligned_cols=37  Identities=22%  Similarity=0.180  Sum_probs=28.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      +.+.||+||||||+++.|...+.....+..+.++++.
T Consensus        83 IGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             EEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            6789999999999999999998654333445555553

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=97.14  E-value=0.0002  Score=58.80  Aligned_cols=36  Identities=25%  Similarity=0.431  Sum_probs=21.7

Q ss_pred             eEEECCCCCChHHH-HHHHHhhc---CCcccCceEEEEeec
Q 048723           34 YLLYGPPGTGKSTM-IAAMANFL---NYDLVGEKGIVFTTN   70 (236)
Q Consensus        34 ~lL~GPpGtGKTtl-akaia~~l---~~~~~~~~~vi~ttN   70 (236)
                      +++.|||||||||+ +..++..+   +.+ ..+++++..||
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll~~~~~~-~~~ILvlt~tn   56 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLIRGCGYQ-ARHIAAVTFTN   56 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHHHHCCC-GGGEEEEESSH
T ss_pred             EEEEeeCCccHHHHHHHHHHHHHHhcCCC-hhHEEEEeCcH
Confidence            88999999999975 34343332   222 12455555554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00021  Score=57.29  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=25.3

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      .-++|+||+|+||||.+-=||..+...  +..+.++++
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~~--g~kV~lit~   45 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAG   45 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEec
Confidence            337899999999999777778776433  344444444

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.06  E-value=0.00022  Score=56.92  Aligned_cols=34  Identities=29%  Similarity=0.455  Sum_probs=23.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      ++|+||+|+||||.+-=||..+...  +..+.++++
T Consensus         9 i~lvGptGvGKTTTiaKLA~~~~~~--g~kV~lit~   42 (207)
T d1okkd2           9 VLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAG   42 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEe
Confidence            7899999999998777778776433  334444443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.06  E-value=0.00019  Score=61.16  Aligned_cols=28  Identities=25%  Similarity=0.580  Sum_probs=25.2

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +++++++||+||||||++++|....+..
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccc
Confidence            4569999999999999999999998766

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.05  E-value=0.00015  Score=54.82  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=23.9

Q ss_pred             hhhCCCCCcc-eEEECCCCCChHHHHHHHHhh
Q 048723           24 AKIGKAWKRG-YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        24 ~~~~~~~~rg-~lL~GPpGtGKTtlakaia~~   54 (236)
                      .-+++..+.. ++|+|+||+|||||+..|.+.
T Consensus         5 ~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           5 QFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             HhccccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3344554444 999999999999999998664

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.05  E-value=0.00014  Score=57.94  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.|+|.|||||||+++.|+..+
T Consensus        27 IwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          27 IWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999766

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00017  Score=57.39  Aligned_cols=29  Identities=17%  Similarity=0.088  Sum_probs=23.2

Q ss_pred             CCCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723           27 GKAWKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        27 ~~~~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      |++..+-++|+||||||||+++..++...
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34444448999999999999999998654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.02  E-value=0.00013  Score=58.39  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=23.1

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcC
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++..+-++|+||||||||+|+-.++...-
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            44444489999999999999998886653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.00  E-value=0.00029  Score=55.85  Aligned_cols=25  Identities=24%  Similarity=0.600  Sum_probs=21.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +++.||+|+|||||+..|...+...
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~~~   27 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLEDN   27 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhC
Confidence            6789999999999999999877533

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00019  Score=57.08  Aligned_cols=23  Identities=35%  Similarity=0.673  Sum_probs=20.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|+||+|+|||||.+.|....+
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhCC
Confidence            78899999999999999998765

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.94  E-value=0.00028  Score=56.31  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=19.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|+||+|+||||.+.-||..+.
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78899999999998887887764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.88  E-value=0.00026  Score=52.25  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|+||+|||||++.+.+.-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.0015  Score=54.07  Aligned_cols=73  Identities=21%  Similarity=0.256  Sum_probs=43.5

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHh-cC-CcccEEecccCCHHHHHHHHHHhh
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIR-RG-RMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r-~g-R~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      .+-+.|+||||||||+++..++......  +...+++.|.  ..+++..++ .| -.|.++.+...+.++...++..+.
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~--g~~~vyIDtE--~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~  134 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAE--HALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI  134 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHHT--TCEEEEEESS--CCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhcC--CCEEEEEECC--ccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            3338899999999999987776654333  2444555554  345555444 22 134555665566666665555443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.81  E-value=0.00032  Score=56.19  Aligned_cols=35  Identities=31%  Similarity=0.354  Sum_probs=20.0

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      -++|+||+|+||||.+-=||..+...  +..+.++++
T Consensus        14 vi~lvGptGvGKTTTiAKLA~~~~~~--g~kV~lit~   48 (211)
T d1j8yf2          14 VIMLVGVQGTGKATTAGKLAYFYKKK--GFKVGLVGA   48 (211)
T ss_dssp             EEEEECSCCC----HHHHHHHHHHHT--TCCEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCceEEEEe
Confidence            38889999999999877777666422  334444443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=3.1e-05  Score=59.08  Aligned_cols=30  Identities=33%  Similarity=0.264  Sum_probs=24.2

Q ss_pred             CCCCCcc-eEEECCCCCChHHHHHHHHhhcC
Q 048723           27 GKAWKRG-YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        27 ~~~~~rg-~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .+...++ .+|+||+||||||++.||.-.+.
T Consensus        19 ~i~f~~~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          19 TFDLDELVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             EECHHHHHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEcCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            3445555 67899999999999999997764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.0004  Score=51.01  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||+..|.+.
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.69  E-value=0.00032  Score=55.01  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHh
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~   53 (236)
                      ++...-++|+||||+|||+|+..++.
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            44444489999999999999977654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.68  E-value=0.0015  Score=54.02  Aligned_cols=70  Identities=21%  Similarity=0.285  Sum_probs=45.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccchHHHhc-C-CcccEEecccCCHHHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDPALIRR-G-RMDKRIEMSYCCFEAFMVLAKSYL  107 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~al~r~-g-R~d~~i~~~~p~~~~~~~i~~~~l  107 (236)
                      +.|+||||||||+++..++......  +...+++.|.  ..++|..++. | -.|..+.+...+.++...++..+.
T Consensus        60 tei~G~~~sGKT~l~l~~~~~aqk~--g~~v~yiDtE--~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~  131 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAE--HALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV  131 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS--CCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHHHHhC--CCEEEEEECC--ccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHH
Confidence            7899999999999999888876443  3445555554  4677766652 1 134556666566666655655543

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.63  E-value=0.00038  Score=54.74  Aligned_cols=30  Identities=17%  Similarity=0.104  Sum_probs=23.4

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhcCC
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFLNY   57 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l~~   57 (236)
                      ++...-++|.||||+|||+++..+|...-.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            333333889999999999999999876643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.61  E-value=0.00054  Score=50.70  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|+||+|||||++.+.+.-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999997753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00062  Score=53.95  Aligned_cols=28  Identities=32%  Similarity=0.382  Sum_probs=22.7

Q ss_pred             Ccc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           31 KRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        31 ~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +||  +.|.||.|+||||+++.|+..+...
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            356  5566999999999999999987543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00059  Score=53.19  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.6

Q ss_pred             cceEEECCCCCChHHHHHHHHhh
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      |.++|+|+||+|||||++.|.+.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.52  E-value=0.0011  Score=57.62  Aligned_cols=29  Identities=41%  Similarity=0.529  Sum_probs=24.9

Q ss_pred             CCcc-eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           30 WKRG-YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        30 ~~rg-~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      .+.| ++|.||.||||||++.++...++.+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~  185 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSS  185 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCC
Confidence            3566 7889999999999999999998765

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.0015  Score=49.84  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=23.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|.|+=|+||||+++.|++.++..
T Consensus        36 i~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          36 VYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             EEEecCCCccHHHHHHHHHhhcccc
Confidence            7889999999999999999999865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.46  E-value=0.00058  Score=51.16  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=19.3

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||++.|.+.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            899999999999999998764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.00088  Score=51.80  Aligned_cols=24  Identities=17%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.++|+|+||+|||||+.+|.+.-
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            458999999999999999998764

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.45  E-value=0.0019  Score=52.46  Aligned_cols=37  Identities=16%  Similarity=0.252  Sum_probs=27.7

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecC
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNY   71 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~   71 (236)
                      .++|+||+|||||++|++|.......  ...++.+..+.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s~~~--~~~~~~~~~~~   61 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVAS   61 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTT
T ss_pred             CEEEECCCCcCHHHHHHHHHHhcCCc--ccccccchhhh
Confidence            39999999999999999998876554  23455555443

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.44  E-value=0.0011  Score=51.47  Aligned_cols=28  Identities=29%  Similarity=0.377  Sum_probs=23.4

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      .+|+||.||||+||||++-.+... +..+
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~-g~~l   41 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR-GHRL   41 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT-TCEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence            467999999999999999988865 5555

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.43  E-value=0.00078  Score=51.87  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=19.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.++|++||||||+++.|. ..+.+
T Consensus         6 IgitG~~gSGKstva~~l~-~~g~~   29 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLR-SWGYP   29 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHH-HTTCC
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCe
Confidence            5689999999999999995 45554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.00085  Score=50.62  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=18.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|+||+|||||+++|.+.-
T Consensus         3 V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.34  E-value=0.0011  Score=51.41  Aligned_cols=28  Identities=36%  Similarity=0.375  Sum_probs=23.0

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ..|++|.||||+||||++-.+... +..+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~-G~~l   42 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK-NHLF   42 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT-TCEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCce
Confidence            467999999999999999888764 4444

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.34  E-value=0.00069  Score=51.42  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||+.+|.+.
T Consensus         3 I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.31  E-value=0.00077  Score=52.00  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||+++|.+.
T Consensus        26 I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          26 IALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHhcCC
Confidence            999999999999999999864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0011  Score=56.29  Aligned_cols=23  Identities=39%  Similarity=0.600  Sum_probs=21.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.++||||+|||||+..|+..+.
T Consensus        57 IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          57 LGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.00075  Score=55.53  Aligned_cols=28  Identities=29%  Similarity=0.536  Sum_probs=22.8

Q ss_pred             CCCcc-eEEECCCCCChHHHHHHHHhhcC
Q 048723           29 AWKRG-YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        29 ~~~rg-~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      .+.++ .+|+||+|||||+++.||.-.++
T Consensus        21 ~f~~~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          21 GFSDRVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             ECCSSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             eCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            33445 68999999999999999987664

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.00094  Score=52.30  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|-|+.||||||+++.|+..+...
T Consensus         5 IviEG~dGsGKsT~~~~L~~~L~~~   29 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVETLEQL   29 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhC
Confidence            6778999999999999999887433

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.28  E-value=0.0009  Score=50.33  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|.||+|||||+..|.+.
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3999999999999999998874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.28  E-value=0.0011  Score=49.65  Aligned_cols=21  Identities=29%  Similarity=0.352  Sum_probs=19.2

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||++.+...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.24  E-value=0.0014  Score=49.40  Aligned_cols=20  Identities=35%  Similarity=0.614  Sum_probs=18.5

Q ss_pred             eEEECCCCCChHHHHHHHHh
Q 048723           34 YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~   53 (236)
                      ++|+|+||+|||||++.+.+
T Consensus        19 I~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            99999999999999998855

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.23  E-value=0.0014  Score=50.47  Aligned_cols=28  Identities=29%  Similarity=0.363  Sum_probs=23.0

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcc
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDL   59 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~   59 (236)
                      ..|++|.||||+||||++-.+... +..+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~-g~~l   42 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR-GHRL   42 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence            467999999999999999887776 4444

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0012  Score=49.94  Aligned_cols=21  Identities=29%  Similarity=0.668  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||+|+..+.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999998754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.22  E-value=0.00076  Score=51.98  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=21.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|-|+.||||||+++.|+..++
T Consensus        12 I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1          12 VLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             EEEECSTTSCHHHHHHTTGGGTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67889999999999999999875

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.19  E-value=0.0014  Score=55.45  Aligned_cols=22  Identities=45%  Similarity=0.676  Sum_probs=20.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.+.||||+|||||+..|+..+
T Consensus        54 igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          54 VGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EeeeCCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0012  Score=49.05  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=19.4

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||+.+|.+.
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999865

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.0015  Score=49.16  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=19.2

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||++.+.+.
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0016  Score=48.76  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.6

Q ss_pred             eEEECCCCCChHHHHHHHHh
Q 048723           34 YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~   53 (236)
                      ++|+|+||+|||||+..+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0014  Score=56.29  Aligned_cols=19  Identities=42%  Similarity=0.744  Sum_probs=15.7

Q ss_pred             eEEECCCCCChHHHHHHHH
Q 048723           34 YLLYGPPGTGKSTMIAAMA   52 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia   52 (236)
                      ++|.|||||||||++..+.
T Consensus       166 ~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             EEEECCTTSTHHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHHH
Confidence            7889999999998875543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0015  Score=49.82  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=18.9

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||++.+.+.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            889999999999999998753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0018  Score=48.83  Aligned_cols=21  Identities=24%  Similarity=0.529  Sum_probs=18.9

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||++.+.+.
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0018  Score=48.98  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||++.+.+.
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988763

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0037  Score=51.98  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=19.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.|.|++||||||++..|...+
T Consensus        30 IGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          30 IFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            5579999999999999887765

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0014  Score=52.98  Aligned_cols=28  Identities=25%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             CCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723           28 KAWKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        28 ~~~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.+..-.+|+||||+|||+|+-.||..+
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3333337899999999999998888653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0018  Score=48.84  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||+|++.+.+.
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998863

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0021  Score=48.17  Aligned_cols=21  Identities=29%  Similarity=0.615  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.||+|||+|++.+.+.
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0022  Score=48.05  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=19.3

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+.+.
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.90  E-value=0.002  Score=49.78  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|.|+.||||||+++.|+..+.
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            56789999999999999998874

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0021  Score=53.64  Aligned_cols=29  Identities=28%  Similarity=0.539  Sum_probs=25.5

Q ss_pred             CCCCcc--eEEECCCCCChHHHHHHHHhhcC
Q 048723           28 KAWKRG--YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +++.+|  .++.||+|+|||+|+..|++...
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            667777  99999999999999999998653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.002  Score=48.24  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.3

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||+|+..+.+.
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0024  Score=47.98  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||+|++.+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            799999999999999998864

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.83  E-value=0.0032  Score=51.80  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=16.4

Q ss_pred             eEEECCCCCChHHH-HHHHHhhc
Q 048723           34 YLLYGPPGTGKSTM-IAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtl-akaia~~l   55 (236)
                      +++.|||||||||+ +..|+..+
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHHH
Confidence            88999999999964 44454443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.82  E-value=0.0023  Score=48.50  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=19.7

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.||+|||||+++|.+.
T Consensus         8 I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           8 VAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            889999999999999999875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.80  E-value=0.0026  Score=49.67  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=20.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+|++||||||+++.+. .++.+
T Consensus         5 IgITG~igSGKStv~~~l~-~~G~~   28 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT-DLGVP   28 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH-TTTCC
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCe
Confidence            5689999999999999886 45555

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.80  E-value=0.0054  Score=49.76  Aligned_cols=47  Identities=15%  Similarity=0.206  Sum_probs=31.1

Q ss_pred             CChHHHHHHHHHHHHhhhChhHHhhhCCCCCcceEEECCCCCChHHHHHHHHhhc
Q 048723            1 METKKKEEIKKDLKKFSEGKEYCAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus         1 ~~~~~k~~i~~~v~~~~~~~~~~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +|+..+..+.+.+.....       .. .-.-.++|+|.||+||||++.+|.+.-
T Consensus        10 ~~~~~~~~l~e~~~~l~~-------~~-~~~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          10 FAPATQTKLLELLGNLKQ-------ED-VNSLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             SCHHHHHHHHHHHHHHHH-------TT-CCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             hhHHHHHHHHHHHHHHhh-------cC-CCCcEEEEECCCCCcHHHHHHHHhCCC
Confidence            456666666554433321       11 112349999999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0022  Score=48.59  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=20.2

Q ss_pred             cceEEECCCCCChHHHHHHHHhh
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      +.++|+|++|+|||+|+..+.+.
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            45899999999999999988865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0028  Score=47.16  Aligned_cols=21  Identities=14%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||+|++.+.+-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0024  Score=48.02  Aligned_cols=20  Identities=25%  Similarity=0.464  Sum_probs=18.7

Q ss_pred             eEEECCCCCChHHHHHHHHh
Q 048723           34 YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~   53 (236)
                      ++|+|.||+|||+|++.+..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998876

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0024  Score=47.75  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=19.2

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++++|+||+|||||++.+.+.
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.74  E-value=0.0013  Score=50.22  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=18.9

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      +.|+|+|++|||||+.+|.+.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0028  Score=48.02  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.3

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+.+.
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998863

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0028  Score=49.64  Aligned_cols=24  Identities=42%  Similarity=0.461  Sum_probs=19.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+|++||||||+++.+. .++.+
T Consensus         6 IgitG~igSGKStv~~~l~-~~G~~   29 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFA-DLGIN   29 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HTTCE
T ss_pred             EEEECCCcCCHHHHHHHHH-HCCCc
Confidence            5689999999999999886 44544

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0027  Score=47.60  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=18.8

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||||+..+.+.
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.0029  Score=48.19  Aligned_cols=21  Identities=24%  Similarity=0.562  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.||+|||||+..+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988863

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0029  Score=47.50  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|+..+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            799999999999999998854

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.0027  Score=51.06  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=22.5

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +-.+|+|+||+|||||+.+|.......
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~  122 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLR  122 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhh
Confidence            347999999999999999998765544

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.68  E-value=0.0031  Score=51.08  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|.|+||+|||+++..|+...
T Consensus        38 ~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHhh
Confidence            8899999999999999988643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.0028  Score=48.02  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=19.5

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||||+.+|.+.
T Consensus        11 V~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0031  Score=47.52  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.9

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||+..+.+.
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999888763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0026  Score=47.87  Aligned_cols=21  Identities=33%  Similarity=0.632  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.||+|||+|++.+...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0028  Score=47.37  Aligned_cols=22  Identities=18%  Similarity=0.227  Sum_probs=19.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhh
Q 048723           33 GYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~   54 (236)
                      .++|+|++|+|||+|++.+.+.
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999998753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0034  Score=47.13  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||+|++.+.+.
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988663

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0036  Score=49.36  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|-|+-||||||+++.|+..+...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhC
Confidence            6788999999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0017  Score=51.16  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +.|-||-||||||+++.|+..+.
T Consensus         5 I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           5 ISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEECSTTSSHHHHHTTTGGGCT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            78899999999999999999885

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0032  Score=47.26  Aligned_cols=21  Identities=29%  Similarity=0.514  Sum_probs=19.3

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.||+|||||+++|.+.
T Consensus         8 I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0037  Score=47.13  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+.+.
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999987753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0034  Score=47.15  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|++|+|||+|++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            7899999999999999987643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0036  Score=46.79  Aligned_cols=20  Identities=20%  Similarity=0.423  Sum_probs=18.5

Q ss_pred             eEEECCCCCChHHHHHHHHh
Q 048723           34 YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~   53 (236)
                      ++|+|.+|+|||+|++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            79999999999999998875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.54  E-value=0.0015  Score=49.28  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=18.9

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||++.+.+.
T Consensus        15 IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999998643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.50  E-value=0.0033  Score=49.87  Aligned_cols=25  Identities=20%  Similarity=0.166  Sum_probs=21.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.|+|+.||||||+++.|+...+..
T Consensus         4 IgiTG~igSGKsTva~~l~e~~g~~   28 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNYSAV   28 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCe
Confidence            6799999999999999998866543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0033  Score=48.45  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||+..+.+.
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            899999999999999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.48  E-value=0.0037  Score=47.37  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.7

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+||+|||||++.+...
T Consensus        20 I~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            999999999999999987543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.0038  Score=52.95  Aligned_cols=24  Identities=38%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             cc-eEEECCCCCChHHHHHHHHhhc
Q 048723           32 RG-YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg-~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +| .+|+||+|||||+++.||.=.+
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45 5899999999999999997444

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0036  Score=46.54  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+.+.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.0043  Score=46.42  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.8

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.0044  Score=46.29  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||||++.+.+.
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998763

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0045  Score=49.86  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=20.5

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.++|+|||.+||||++|+|+-..
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHHH
Confidence            458899999999999999987643

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0058  Score=49.49  Aligned_cols=46  Identities=20%  Similarity=0.277  Sum_probs=33.8

Q ss_pred             CCcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccch
Q 048723           30 WKRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLDP   77 (236)
Q Consensus        30 ~~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld~   77 (236)
                      .+|-+++.|.-|+||||++-+||..+...  |...+++.+....++..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~--G~rVLlvD~Dp~~~l~~   52 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTDPASNVGQ   52 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCCHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHC--CCCEEEEeCCCCCCHHH
Confidence            35667889999999999999999988544  45566667665444543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.31  E-value=0.0012  Score=48.84  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=20.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|.||+|||||+.+|.+.-
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.28  E-value=0.005  Score=46.22  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=18.6

Q ss_pred             eEEECCCCCChHHHHHHHHh
Q 048723           34 YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~   53 (236)
                      ++|+|.+|+|||||++.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.0027  Score=47.94  Aligned_cols=20  Identities=30%  Similarity=0.602  Sum_probs=8.6

Q ss_pred             eEEECCCCCChHHHHHHHHh
Q 048723           34 YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~   53 (236)
                      ++|+|.+|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998775

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0046  Score=46.63  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.25  E-value=0.0032  Score=47.62  Aligned_cols=21  Identities=43%  Similarity=0.577  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      +.|+|.|++|||||+++|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            889999999999999998754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.0053  Score=46.12  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+.+.
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998863

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.0033  Score=47.11  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|+|++|||||+++|.+.
T Consensus        19 I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          19 VAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            999999999999999998653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0055  Score=45.75  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=19.1

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0053  Score=48.51  Aligned_cols=25  Identities=20%  Similarity=0.167  Sum_probs=22.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ++|-|+-||||||+++.|+..+...
T Consensus         5 IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           5 LSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             EEEECCCCCcHHHHHHHHHHHHhhc
Confidence            7889999999999999999988644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0058  Score=46.39  Aligned_cols=21  Identities=14%  Similarity=0.339  Sum_probs=19.0

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+...
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999987764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0027  Score=47.92  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=17.4

Q ss_pred             eEEECCCCCChHHHHHHHHh
Q 048723           34 YLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~   53 (236)
                      ++|+|++|+|||+|+..+.+
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999987654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.89  E-value=0.0034  Score=52.27  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=19.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +.+.|++||||||++++|...++..
T Consensus         7 IgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             EEEESCC---CCTHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHhhc
Confidence            7899999999999999999987543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.009  Score=47.39  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=19.8

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|.|..|+|||||++.+....
T Consensus         6 ~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEeeCCCCCHHHHHHHHHhcC
Confidence            7899999999999999998853

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.0069  Score=46.01  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=18.8

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+..-
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999887764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0071  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|.+|+|||+|++.+.+.
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            889999999999999987753

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.72  E-value=0.0096  Score=42.86  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=18.9

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      +..+|.+|.|+|||+++-.+....+
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~   33 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQG   33 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTT
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            3478999999999998765554443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0079  Score=45.98  Aligned_cols=21  Identities=14%  Similarity=0.339  Sum_probs=18.5

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||+|+..+...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999887654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.60  E-value=0.016  Score=47.76  Aligned_cols=28  Identities=29%  Similarity=0.604  Sum_probs=23.7

Q ss_pred             CCCCcc--eEEECCCCCChHHHHHHHHhhc
Q 048723           28 KAWKRG--YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +++.+|  ++++|++|+|||+|+..|++..
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            455666  9999999999999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.59  E-value=0.0087  Score=45.48  Aligned_cols=18  Identities=44%  Similarity=0.665  Sum_probs=17.3

Q ss_pred             eEEECCCCCChHHHHHHH
Q 048723           34 YLLYGPPGTGKSTMIAAM   51 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakai   51 (236)
                      ++|+|.+|+|||||++.+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            899999999999999998

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.44  E-value=0.01  Score=47.36  Aligned_cols=23  Identities=35%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .++|+|||.+||||++|+|+-..
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHHH
Confidence            37899999999999999887653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.011  Score=50.75  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=24.3

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc-CCcccCceEEEEee
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL-NYDLVGEKGIVFTT   69 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l-~~~~~~~~~vi~tt   69 (236)
                      +.++++|++|+|||++++.|...+ ...   ..+||+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g---~~~iiiD~   86 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRG---DRMVIVDP   86 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTT---CEEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCC---CCEEEEeC
Confidence            449999999999999887665544 222   45555443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.30  E-value=0.0037  Score=50.42  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=19.3

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      ..+|+|+||+|||||+.+|.......
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~  124 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLR  124 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-----
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhh
Confidence            37899999999999999998766544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.19  E-value=0.012  Score=46.37  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.7

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|++|+|||||++.+...
T Consensus         9 illlG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999987544

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.014  Score=44.20  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++++|++|+|||+|+..+.+.-
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999887753

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.95  E-value=0.024  Score=43.97  Aligned_cols=32  Identities=31%  Similarity=0.289  Sum_probs=25.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      .+|..|+|+|||.++-.++..++.+    ++|++.+
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~~~~----~Liv~p~  119 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINELSTP----TLIVVPT  119 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHSCSC----EEEEESS
T ss_pred             cEEEeCCCCCceehHHhHHHHhcCc----eeEEEcc
Confidence            5688899999999988888877543    6666654

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.83  E-value=0.027  Score=46.30  Aligned_cols=31  Identities=23%  Similarity=0.187  Sum_probs=24.1

Q ss_pred             CCCCcc--eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           28 KAWKRG--YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        28 ~~~~rg--~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      +++.+|  ++++|++|+|||+|+..++.....+
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~   94 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQ   94 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTT
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhhhccc
Confidence            456677  8999999999999998766555444

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.71  E-value=0.024  Score=39.90  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=16.9

Q ss_pred             CcceEEECCCCCChHHHH-HHHHhh
Q 048723           31 KRGYLLYGPPGTGKSTMI-AAMANF   54 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtla-kaia~~   54 (236)
                      .+.++|++|+|+|||..+ .++...
T Consensus         7 ~~~~il~~~tGsGKT~~~~~~~~~~   31 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRFLPQILAE   31 (140)
T ss_dssp             TCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred             CCcEEEEcCCCCChhHHHHHHHHHH
Confidence            344899999999999655 343333

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.67  E-value=0.016  Score=43.81  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=19.4

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      +.++|+|.+|||||+.+|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            889999999999999999864

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.49  E-value=0.013  Score=45.21  Aligned_cols=38  Identities=24%  Similarity=0.239  Sum_probs=24.1

Q ss_pred             CcceEEECCCCCChHHHH-HHHHhhcCCcccCceEEEEeec
Q 048723           31 KRGYLLYGPPGTGKSTMI-AAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtla-kaia~~l~~~~~~~~~vi~ttN   70 (236)
                      .+.+++..|+|||||+++ -.+...+...  +.+++++.+.
T Consensus        40 ~~~~il~apTGsGKT~~a~l~i~~~~~~~--~~vl~l~P~~   78 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAEMAMVREAIKG--GKSLYVVPLR   78 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHHHHHHTT--CCEEEEESSH
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHHhhcc--CcceeecccH
Confidence            445899999999999875 3344333322  2566665553

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.44  E-value=0.03  Score=47.26  Aligned_cols=25  Identities=36%  Similarity=0.244  Sum_probs=22.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      |.|-|+-|+||||+++.|++.+...
T Consensus         9 I~iEG~iGsGKSTl~~~L~~~l~~~   33 (333)
T d1p6xa_           9 IYLDGVYGIGKSTTGRVMASAASGG   33 (333)
T ss_dssp             EEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             EEEECCccCCHHHHHHHHHHHhccC
Confidence            6788999999999999999998765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.021  Score=42.97  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=19.5

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++|+|.+|+|||+|++.+..-.
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999986553

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.31  E-value=0.018  Score=43.80  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=17.8

Q ss_pred             cceEEECCCCCChHHHHHHHHhh
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~   54 (236)
                      +..++++|.|+|||.++-.++..
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~~~   46 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIAEY   46 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHHHHHHH
Confidence            34889999999999876655543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.04  Score=44.12  Aligned_cols=41  Identities=34%  Similarity=0.340  Sum_probs=27.3

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeecCccccc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTNYVDKLD   76 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN~~~~ld   76 (236)
                      +++.|.-|+||||++-.||..+...  |..++++.+..-..+.
T Consensus        23 ii~sGKGGVGKTT~a~nLA~~lA~~--G~rVllvD~Dp~~~l~   63 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAIAVRLADM--GFDVHLTTSDPAAHLS   63 (279)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESCCC----
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEeCCCCCChH
Confidence            7788999999999988888887544  4455555555333333

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.29  E-value=0.037  Score=45.16  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      |.+.++|+.|+|||||+.+|....+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            5689999999999999999976654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.28  E-value=0.032  Score=43.92  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=24.5

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      ++.+++++|.|+|||+++-..+-..... ...+++++.++
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~~~~~~-~~rvliv~Pt~   96 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTS   96 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHHHHh-cCeEEEEeccH
Confidence            3458999999999998655544332111 12466666654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.22  E-value=0.037  Score=41.29  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=18.7

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      ++|+|..|+|||+|++.+...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            899999999999999987654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.83  E-value=0.044  Score=46.09  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=19.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      |.|-|+=|+||||+++.|+..+...
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~~~   31 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGSRD   31 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC----C
T ss_pred             EEEECCcCCCHHHHHHHHHHHhCCC
Confidence            6778999999999999999887644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.039  Score=47.43  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             ceEEECCCCCChHHHHHHHHh
Q 048723           33 GYLLYGPPGTGKSTMIAAMAN   53 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~   53 (236)
                      .++++|.||+|||||+.+|.+
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999986

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.57  E-value=0.055  Score=42.45  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.++|.|.+|||||+.+|.+..
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhhc
Confidence            8899999999999999998753

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.56  E-value=0.042  Score=46.20  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=22.9

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~   58 (236)
                      |.|-|+=|+||||+++.|+..+...
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhc
Confidence            6788999999999999999998766

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.50  E-value=0.048  Score=44.70  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=22.6

Q ss_pred             CcceEEECCCCCChHHHHHHHHhhcC
Q 048723           31 KRGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        31 ~rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      -|.+.++|..|+|||||+.+|....+
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            35799999999999999999976654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.34  E-value=0.054  Score=44.61  Aligned_cols=27  Identities=26%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             CCCCcc--eEEECCCCCChHHHHHHHHhh
Q 048723           28 KAWKRG--YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        28 ~~~~rg--~lL~GPpGtGKTtlakaia~~   54 (236)
                      +++.+|  +++.|++|+|||+++..++..
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            556677  899999999999998877654

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.083  Score=44.91  Aligned_cols=46  Identities=26%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             hCCCCCcceEEECCCCCChHH-HHHHHHhhcCCc---------c-cCceEEEEeecC
Q 048723           26 IGKAWKRGYLLYGPPGTGKST-MIAAMANFLNYD---------L-VGEKGIVFTTNY   71 (236)
Q Consensus        26 ~~~~~~rg~lL~GPpGtGKTt-lakaia~~l~~~---------~-~~~~~vi~ttN~   71 (236)
                      +..++...+|+.+..|||||+ |+.-++..+-..         + ..+++++..||.
T Consensus        11 ~~~p~~g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~k   67 (485)
T d1w36b1          11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEA   67 (485)
T ss_dssp             GGCCCSSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHH
T ss_pred             ccCCCCCCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHH
Confidence            445555558889999999996 445555554210         0 125777777754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.24  E-value=0.12  Score=41.04  Aligned_cols=36  Identities=28%  Similarity=0.368  Sum_probs=27.4

Q ss_pred             ceEEECCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      .+.++|.-|+||||++-.||..+...  |..++++...
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~--G~rVllID~D   38 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEEC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhC--CCcEEEEecC
Confidence            36789999999999999999988654  4445555543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.67  E-value=0.04  Score=46.08  Aligned_cols=16  Identities=38%  Similarity=0.748  Sum_probs=14.3

Q ss_pred             eEEECCCCCChHHHHH
Q 048723           34 YLLYGPPGTGKSTMIA   49 (236)
Q Consensus        34 ~lL~GPpGtGKTtlak   49 (236)
                      .+|+|.+|||||||..
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            7899999999999764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=0.055  Score=45.11  Aligned_cols=16  Identities=38%  Similarity=0.748  Sum_probs=14.3

Q ss_pred             eEEECCCCCChHHHHH
Q 048723           34 YLLYGPPGTGKSTMIA   49 (236)
Q Consensus        34 ~lL~GPpGtGKTtlak   49 (236)
                      -+|.|.+|||||||..
T Consensus        17 alfFGLSGTGKTTLs~   32 (313)
T d2olra1          17 AVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEECSTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            6899999999999773

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.62  E-value=0.075  Score=40.74  Aligned_cols=31  Identities=23%  Similarity=0.172  Sum_probs=23.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      +|++|+..||||..|..++..  ..   .++.|+|+
T Consensus         2 iLVtGGarSGKS~~AE~l~~~--~~---~~~YiAT~   32 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD--AP---QVLYIATS   32 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS--CS---SEEEEECC
T ss_pred             EEEECCCCccHHHHHHHHHhc--CC---CcEEEEcc
Confidence            578999999999999998743  22   45555554

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.43  E-value=0.12  Score=37.13  Aligned_cols=23  Identities=9%  Similarity=0.056  Sum_probs=20.1

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++|.|-+|+||+|++++|...+.
T Consensus         9 i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           9 IVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             EEECTTCCSCHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            77899999999999999976663

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.23  E-value=0.076  Score=44.41  Aligned_cols=16  Identities=44%  Similarity=0.792  Sum_probs=14.5

Q ss_pred             eEEECCCCCChHHHHH
Q 048723           34 YLLYGPPGTGKSTMIA   49 (236)
Q Consensus        34 ~lL~GPpGtGKTtlak   49 (236)
                      .+|.|.+|||||||..
T Consensus        17 alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEECCTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            6899999999999983

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.19  E-value=0.098  Score=41.90  Aligned_cols=18  Identities=33%  Similarity=0.390  Sum_probs=14.7

Q ss_pred             CCCcceEEECCCCCChHH
Q 048723           29 AWKRGYLLYGPPGTGKST   46 (236)
Q Consensus        29 ~~~rg~lL~GPpGtGKTt   46 (236)
                      ..++.+++.+|+|||||+
T Consensus         7 ~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             hcCCcEEEEECCCCCHHH
Confidence            345558999999999995

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.85  E-value=0.1  Score=42.49  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      -++++|...+|||||+.+|.+.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            38899999999999999999864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.12  Score=39.04  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=22.0

Q ss_pred             ceEEECC-CCCChHHHHHHHHhhcCCc
Q 048723           33 GYLLYGP-PGTGKSTMIAAMANFLNYD   58 (236)
Q Consensus        33 g~lL~GP-pGtGKTtlakaia~~l~~~   58 (236)
                      .|+++|- +|+||||++-.||..+...
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~   29 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAA   29 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHC
Confidence            4788999 4999999999999988544

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.10  E-value=0.16  Score=41.45  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      +-|+|.|.+|||||..+|.+.
T Consensus        13 iGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.33  E-value=0.14  Score=39.55  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             ceEEECCCCCChHHHHHHHHhhc
Q 048723           33 GYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        33 g~lL~GPpGtGKTtlakaia~~l   55 (236)
                      .+.++|-+++|||||+.+|...+
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHh
Confidence            48899999999999999996543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.82  E-value=0.22  Score=40.09  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=20.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ++++|.-.+|||||+.+|.+.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            8899999999999999998754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.62  E-value=0.15  Score=41.68  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=18.6

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      +.|+|.|.+|||||..+|.+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            679999999999999999764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.67  E-value=0.25  Score=39.56  Aligned_cols=34  Identities=29%  Similarity=0.415  Sum_probs=24.2

Q ss_pred             eEEECCCCCChHHHHHHHHhhcCCcccCceEEEEee
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLNYDLVGEKGIVFTT   69 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~~~~~~~~~vi~tt   69 (236)
                      +.++|.-|+||||++-.||..+...  |..++++..
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~~--G~rVLlID~   38 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGC   38 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEec
Confidence            5679999999999888888877433  334444444

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=85.26  E-value=0.44  Score=38.15  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             eEEECCCCCChHHHHHHHHhhcC
Q 048723           34 YLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      ++++|-|.+|||||+.+|.+.-.
T Consensus       115 v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         115 ALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSCC
T ss_pred             EEEEecCccchhhhhhhhhccce
Confidence            78999999999999999998643

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=0.31  Score=38.60  Aligned_cols=78  Identities=12%  Similarity=0.101  Sum_probs=40.9

Q ss_pred             hCCCCCcceEEECCCCCChHHHHHHHH-hhcCCcccCceEEEEeecCccccchHHHh-----cCCcccE--EecccCCHH
Q 048723           26 IGKAWKRGYLLYGPPGTGKSTMIAAMA-NFLNYDLVGEKGIVFTTNYVDKLDPALIR-----RGRMDKR--IEMSYCCFE   97 (236)
Q Consensus        26 ~~~~~~rg~lL~GPpGtGKTtlakaia-~~l~~~~~~~~~vi~ttN~~~~ld~al~r-----~gR~d~~--i~~~~p~~~   97 (236)
                      +.-+.+...||+|..|||||.++-..+ ..+...  ..+++++.|   ..|-+...+     .+-++..  +..+..+..
T Consensus        71 ~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g--~qv~~l~Pt---~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~  145 (233)
T d2eyqa3          71 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH--KQVAVLVPT---TLLAQQHYDNFRDRFANWPVRIEMISRFRSAK  145 (233)
T ss_dssp             HHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT--CEEEEECSS---HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHH
T ss_pred             HhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcC--CceEEEccH---HHhHHHHHHHHHHHHhhCCCEEEeccCcccch
Confidence            333334458999999999997654444 444322  134444433   223332222     1122222  234556677


Q ss_pred             HHHHHHHHhhc
Q 048723           98 AFMVLAKSYLD  108 (236)
Q Consensus        98 ~~~~i~~~~l~  108 (236)
                      .+..+|.....
T Consensus       146 ~~~~~~~~~~~  156 (233)
T d2eyqa3         146 EQTQILAEVAE  156 (233)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHHhC
Confidence            77777776543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=0.19  Score=40.81  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=19.4

Q ss_pred             eEEECCCCCChHHHHHHHHhhc
Q 048723           34 YLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~l   55 (236)
                      +.++||.+||||+|+..|.+..
T Consensus        35 vsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          35 VAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            6789999999999999988754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=83.77  E-value=0.33  Score=38.97  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=19.4

Q ss_pred             eEEECCCCCChHHHHHHHHhh
Q 048723           34 YLLYGPPGTGKSTMIAAMANF   54 (236)
Q Consensus        34 ~lL~GPpGtGKTtlakaia~~   54 (236)
                      +-|+|-|.+|||||..+|.+.
T Consensus         5 ~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           5 CGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            779999999999999999965

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.54  E-value=0.4  Score=36.53  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=23.2

Q ss_pred             eEEE-CCCCCChHHHHHHHHhhcCCcccCceEEEEe
Q 048723           34 YLLY-GPPGTGKSTMIAAMANFLNYDLVGEKGIVFT   68 (236)
Q Consensus        34 ~lL~-GPpGtGKTtlakaia~~l~~~~~~~~~vi~t   68 (236)
                      +.++ |-.|+||||++..||..+...  |..++++.
T Consensus         4 Iav~s~KGGvGKTtia~nlA~~la~~--g~~VlliD   37 (232)
T d1hyqa_           4 ITVASGKGGTGKTTITANLGVALAQL--GHDVTIVD   37 (232)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred             EEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEe
Confidence            4454 889999999999999888533  33444443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.75  E-value=0.53  Score=35.79  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=25.1

Q ss_pred             eEEE-CCCCCChHHHHHHHHhhcCCcccCceEEEEeec
Q 048723           34 YLLY-GPPGTGKSTMIAAMANFLNYDLVGEKGIVFTTN   70 (236)
Q Consensus        34 ~lL~-GPpGtGKTtlakaia~~l~~~~~~~~~vi~ttN   70 (236)
                      +.++ +-.|+||||++-.||..+...  |..++++..+
T Consensus         5 Iav~~~kGGvGKTtia~nLA~~la~~--g~~VlliD~D   40 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLSVALGDR--GRKVLAVDGD   40 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhC--CCCEEEEeCC
Confidence            5666 569999999999999988533  3445555544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.59  E-value=0.26  Score=41.28  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=21.4

Q ss_pred             cceEEECCCCCChHHHHHHHHhhcC
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFLN   56 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l~   56 (236)
                      |.++++|..++|||||+.+|....+
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            4599999999999999999975443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=81.77  E-value=0.37  Score=44.02  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..+++.|.+|+|||..+|.|.+.+
T Consensus        87 QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            348999999999999998887765

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.52  E-value=1.1  Score=35.92  Aligned_cols=83  Identities=8%  Similarity=-0.010  Sum_probs=43.6

Q ss_pred             HhhhCCCCCcceEEECCCCCChHHHHHHHHhhc-CCcccCceEEEEeecCcc-ccchHHHh-cCC--cccEEecccCCHH
Q 048723           23 CAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFL-NYDLVGEKGIVFTTNYVD-KLDPALIR-RGR--MDKRIEMSYCCFE   97 (236)
Q Consensus        23 ~~~~~~~~~rg~lL~GPpGtGKTtlakaia~~l-~~~~~~~~~vi~ttN~~~-~ld~al~r-~gR--~d~~i~~~~p~~~   97 (236)
                      ..++.-..+..-||.|.-|||||.++-..+... ...  ..+.+++-|.-.. ..=..+.. ...  +...+..+..+..
T Consensus        96 ~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g--~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~  173 (264)
T d1gm5a3          96 RNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG--FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPS  173 (264)
T ss_dssp             HHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT--SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHH
T ss_pred             HHHhhccCcceeeeeccccccccHHHHHHHHHHHhcc--cceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchH
Confidence            344444445558999999999998665544332 111  1466666552111 00001112 111  2233445667777


Q ss_pred             HHHHHHHHhh
Q 048723           98 AFMVLAKSYL  107 (236)
Q Consensus        98 ~~~~i~~~~l  107 (236)
                      .+..+|....
T Consensus       174 ~r~~~~~~~~  183 (264)
T d1gm5a3         174 EKEKIKSGLR  183 (264)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888663

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.10  E-value=0.41  Score=43.99  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=20.2

Q ss_pred             cceEEECCCCCChHHHHHHHHhhc
Q 048723           32 RGYLLYGPPGTGKSTMIAAMANFL   55 (236)
Q Consensus        32 rg~lL~GPpGtGKTtlakaia~~l   55 (236)
                      ..+++.|.+|+|||..+|.|.+.+
T Consensus       126 QsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         126 QSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHH
Confidence            349999999999999888876655